Mercurial > repos > artbio > gsc_center_scale
comparison center_scale.xml @ 2:163befe5f05b draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_center_scale commit 41ba5435a8ad12c1fe0703a9ce44b759003f3f73
author | artbio |
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date | Sun, 15 Oct 2023 16:16:16 +0000 |
parents | a96cc346819c |
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1:a96cc346819c | 2:163befe5f05b |
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1 <tool id="center_scale" name="Center or scale (standardize) data" version="0.9.5"> | 1 <tool id="center_scale" name="Center or scale (standardize) data" version="4.3.1+galaxy0" profile="21.01"> |
2 <description></description> | 2 <description></description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="1.6.0">r-optparse</requirement> | 4 <requirement type="package" version="1.7.3">r-optparse</requirement> |
5 </requirements> | 5 </requirements> |
6 <stdio> | 6 <stdio> |
7 <exit_code range="1:" level="fatal" description="Tool exception" /> | 7 <exit_code range="1:" level="fatal" description="Tool exception" /> |
8 </stdio> | 8 </stdio> |
9 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
92 **What it does** | 92 **What it does** |
93 | 93 |
94 The tool perform various normalization operations on a data table, including mean centering, | 94 The tool perform various normalization operations on a data table, including mean centering, |
95 standard deviation rescaling, or both (standardization). | 95 standard deviation rescaling, or both (standardization). |
96 | 96 |
97 In addition, these operations can be performed on subsets of observations, is the user provides | 97 In addition, these operations can be performed on subsets of observations, if the user provides |
98 a two-column table that maps observations to groups (factor levels). | 98 a two-column table that maps observations to groups (factor levels). |
99 | 99 |
100 **Inputs** | 100 **Inputs** |
101 | 101 |
102 A data table with observations (samples, library sequencings) in columns (library names | 102 A data table with observations (samples, library sequencings) in columns (library names |