Mercurial > repos > artbio > gsc_high_dimensions_visualisation
comparison high_dim_visu.xml @ 6:19bef589f876 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_high_dimension_visualization commit ee5de0b259c9b50872bb6f5f946e439345838349"
| author | artbio |
|---|---|
| date | Wed, 24 Jun 2020 06:22:53 -0400 |
| parents | 569334568afa |
| children | 18a1dc4aec4a |
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| 5:569334568afa | 6:19bef589f876 |
|---|---|
| 1 <tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.5"> | 1 <tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.6"> |
| 2 <description>from highly dimensional expression data</description> | 2 <description>from highly dimensional expression data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.6.2=r35h6115d3f_0">r-optparse</requirement> | 4 <requirement type="package" version="1.6.2=r35h6115d3f_0">r-optparse</requirement> |
| 5 <requirement type="package" version="1.42=r35h6115d3f_0">r-factominer</requirement> | 5 <requirement type="package" version="1.42=r35h6115d3f_0">r-factominer</requirement> |
| 6 <requirement type="package" version="1.0.5">r-factoextra</requirement> | 6 <requirement type="package" version="1.0.5">r-factoextra</requirement> |
| 7 <requirement type="package" version="0.15=r351he1b5a44_0">r-rtsne</requirement> | 7 <requirement type="package" version="0.15=r351he1b5a44_0">r-rtsne</requirement> |
| 8 <requirement type="package" version="0.4.7=r351h6115d3f_0">r-ggfortify</requirement> | 8 <requirement type="package" version="0.4.7=r351h6115d3f_0">r-ggfortify</requirement> |
| 9 <requirement type="package" version="1.1.9=r351h0357c0b_0">r-clusterr</requirement> | 9 <requirement type="package" version="1.1.9=r351h0357c0b_0">r-clusterr</requirement> |
| 10 <!--<requirement type="package" version="1.11.6=r351hc070d10_0">r-data.table</requirement>--> | 10 <!-- <requirement type="package" version="1.11.6=r351hc070d10_0">r-data.table</requirement> --> |
| 11 </requirements> | 11 </requirements> |
| 12 <stdio> | 12 <stdio> |
| 13 <exit_code range="1:" level="fatal" description="Tool exception" /> | 13 <exit_code range="1:" level="fatal" description="Tool exception" /> |
| 14 </stdio> | 14 </stdio> |
| 15 <command detect_errors="exit_code"><![CDATA[ | 15 <command detect_errors="exit_code"><![CDATA[ |
| 376 <param name="coord" value="yes" /> | 376 <param name="coord" value="yes" /> |
| 377 <param name="Rtsne_dims" value="3" /> | 377 <param name="Rtsne_dims" value="3" /> |
| 378 <param name="Rtsne_perplexity" value="10"/> | 378 <param name="Rtsne_perplexity" value="10"/> |
| 379 <param name="Rtsne_theta" value="1" /> | 379 <param name="Rtsne_theta" value="1" /> |
| 380 <param name="Rtsne_normalize" value="FALSE" /> | 380 <param name="Rtsne_normalize" value="FALSE" /> |
| 381 <output name="pdf_out" file="tsne-2.nolabels.pdf" ftype="pdf" compare="sim_size" delta="500"/> | 381 <output name="pdf_out" file="tsne-2.nolabels.pdf" ftype="pdf" compare="sim_size" delta="1000"/> |
| 382 <output name="table_coordinates" file="tsne-2.coord.tab" ftype="tabular" compare="sim_size" delta="500"/> | 382 <output name="table_coordinates" file="tsne-2.coord.tab" ftype="tabular" compare="sim_size" delta="1000"/> |
| 383 </test> | 383 </test> |
| 384 </tests> | 384 </tests> |
| 385 <help> | 385 <help> |
| 386 | 386 |
| 387 **What it does** | 387 **What it does** |