Mercurial > repos > artbio > gsc_high_dimensions_visualisation
comparison high_dim_visu.xml @ 1:c756ab726a85 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_high_dimension_visualization commit 06c8d40814f68cbf4d24b2ea70a11407bc40d072
| author | artbio |
|---|---|
| date | Mon, 24 Jun 2019 19:16:53 -0400 |
| parents | cad0001b9cfb |
| children | 7e7a2a4cfce2 |
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| 0:cad0001b9cfb | 1:c756ab726a85 |
|---|---|
| 1 <tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.0"> | 1 <tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.1"> |
| 2 <description>from highly dimensional expression data</description> | 2 <description>from highly dimensional expression data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> | 4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> |
| 5 <requirement type="package" version="1.39=r3.3.2_0">r-factominer</requirement> | 5 <requirement type="package" version="1.39=r3.3.2_0">r-factominer</requirement> |
| 6 <requirement type="package" version="1.0.5=r3.3.2_0">r-factoextra</requirement> | 6 <requirement type="package" version="1.0.5=r3.3.2_0">r-factoextra</requirement> |
| 164 <option value="yes">Yes</option> | 164 <option value="yes">Yes</option> |
| 165 </param> | 165 </param> |
| 166 | 166 |
| 167 </inputs> | 167 </inputs> |
| 168 <outputs> | 168 <outputs> |
| 169 <data name="pdf_out" format="pdf" label="${visualisation.visu_choice} on ${on_string}" /> | 169 <data name="pdf_out" format="pdf" label="${visualisation.visu_choice} of ${on_string}" /> |
| 170 <data name="table_coordinates" format="tabular" label="Scatter plot coordinates from ${tool.name} on ${on_string}" > | 170 <data name="table_coordinates" format="tabular" label="Scatter plot coordinates from ${visualisation.visu_choice} of ${on_string}" > |
| 171 <filter>coord == 'yes'</filter> | 171 <filter>coord == 'yes'</filter> |
| 172 </data> | 172 </data> |
| 173 </outputs> | 173 </outputs> |
| 174 <tests> | 174 <tests> |
| 175 <!-- test PCA --> | 175 <!-- test PCA --> |