Mercurial > repos > artbio > gsc_high_dimensions_visualisation

diff high_dim_visu.xml @ 2:7e7a2a4cfce2 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_high_dimension_visualization commit e15ae06208ef1d3d42c0576ed28eb6ba10a36671
author artbio
date Tue, 25 Jun 2019 16:20:27 -0400
parents c756ab726a85
children 8e44c9e18a56
line wrap: on
line diff
--- a/high_dim_visu.xml	Mon Jun 24 19:16:53 2019 -0400
+++ b/high_dim_visu.xml	Tue Jun 25 16:20:27 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.1">
+<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.2">
     <description>from highly dimensional expression data</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -206,6 +206,15 @@
             <param name="factor" value="factor.tsv" ftype="txt"/>
             <output name="pdf_out" file="pca.nolabels.factors.pdf" ftype="pdf"/>
         </test>
+        <!-- test two-level factor contrasting on PCA -->
+        <test>
+            <param name="input" value="cpm_input.tsv" ftype="txt"/>
+            <param name="labels" value="no" />
+            <param name="visu_choice" value="PCA" />
+            <param name="factor_choice" value="Yes" />
+            <param name="factor" value="2-lev_factor.tsv" ftype="txt"/>
+            <output name="pdf_out" file="pca.nolabels.2-lev-factor.pdf" ftype="pdf"/>
+        </test>
         <test>
             <param name="input" value="cpm_input.tsv" ftype="txt"/>
             <param name="labels" value="no" />