Mercurial > repos > artbio > gsc_high_dimensions_visualisation

diff high_dim_visu.xml @ 9:58aa18e1fe14 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_high_dimension_visualization commit 7343be2d3b1b8cb1ba0c4c55767b60dbce8f8b22
author artbio
date Thu, 07 Nov 2024 22:43:01 +0000
parents fe6f76030168
children
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--- a/high_dim_visu.xml	Wed Nov 29 17:28:18 2023 +0000
+++ b/high_dim_visu.xml	Thu Nov 07 22:43:01 2024 +0000
@@ -1,5 +1,8 @@
-<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="4.3+galaxy0" profile="20.01">
+<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="4.3+galaxy1" profile="20.01">
     <description>from highly dimensional expression data</description>
+    <xrefs>
+        <xref type="bio.tools">galaxy_single_cell_suite</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1.7.3=r43hc72bb7e_2">r-optparse</requirement>
         <requirement type="package" version="2.9=r43h57805ef_0">r-factominer</requirement>
@@ -236,7 +239,7 @@
             <param name="visu_choice" value="PCA" />
             <param name="factor_choice" value="No" />
             <param name="item_size" value="0.5" />
-            <output name="pdf_out" file="pca.1.pdf" ftype="pdf"/>
+            <output name="pdf_out" file="pca.1.pdf" ftype="pdf" compare="sim_size" delta="1000"/>
         </test>
         <!-- test PCA PC2 vs PC3 -->
         <test expect_num_outputs="1">
@@ -246,7 +249,7 @@
             <param name="factor_choice" value="No" />
             <param name="x_axis" value="2" />
             <param name="y_axis" value="3" />
-            <output name="pdf_out" file="pca.2.pdf" ftype="pdf"/>
+            <output name="pdf_out" file="pca.2.pdf" ftype="pdf" compare="sim_size" delta="1000"/>
         </test>
         <!-- test factor contrasting on PCA -->
         <test expect_num_outputs="1">
@@ -255,7 +258,7 @@
             <param name="visu_choice" value="PCA" />
             <param name="factor_choice" value="Yes" />
             <param name="factor" value="factor.tsv" ftype="txt"/>
-            <output name="pdf_out" file="pca.3.pdf" ftype="pdf"/>
+            <output name="pdf_out" file="pca.3.pdf" ftype="pdf" compare="sim_size" delta="1000"/>
         </test>
         <!-- test numerical factor contrasting on PCA -->
         <test expect_num_outputs="1">