changeset 2:7e7a2a4cfce2 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_high_dimension_visualization commit e15ae06208ef1d3d42c0576ed28eb6ba10a36671
author artbio
date Tue, 25 Jun 2019 16:20:27 -0400
parents c756ab726a85
children 8e44c9e18a56
files high_dim_visu.R high_dim_visu.xml test-data/2-lev_factor.tsv test-data/pca.nolabels.2-lev-factor.pdf
diffstat 4 files changed, 1052 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/high_dim_visu.R	Mon Jun 24 19:16:53 2019 -0400
+++ b/high_dim_visu.R	Tue Jun 25 16:20:27 2019 -0400
@@ -229,11 +229,16 @@
   contrasting_factor <- contrasting_factor[colnames(data),]
   colnames(contrasting_factor) <- c("id","factor")
   contrasting_factor$factor <- as.factor(contrasting_factor$factor)
+  if(nlevels(contrasting_factor$factor) == 2){
+    colors_labels <- c("#E41A1C", "#377EB8")
+  } else {
+    colors_labels <- brewer.pal(nlevels(contrasting_factor$factor), name = 'Paired')
+  }
   factorColors <-
     with(contrasting_factor,
-         data.frame(factor = levels(factor),
-                    data.frame(factor = levels(factor),
-                               color = I(brewer.pal(nlevels(factor), name = 'Paired'))))
+         data.frame(factor = levels(contrasting_factor$factor),
+                    color = I(colors_labels)
+         )
     )
   factor_cols <- factorColors$color[match(contrasting_factor$factor,
                                           factorColors$factor)]
--- a/high_dim_visu.xml	Mon Jun 24 19:16:53 2019 -0400
+++ b/high_dim_visu.xml	Tue Jun 25 16:20:27 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.1">
+<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.2">
     <description>from highly dimensional expression data</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -206,6 +206,15 @@
             <param name="factor" value="factor.tsv" ftype="txt"/>
             <output name="pdf_out" file="pca.nolabels.factors.pdf" ftype="pdf"/>
         </test>
+        <!-- test two-level factor contrasting on PCA -->
+        <test>
+            <param name="input" value="cpm_input.tsv" ftype="txt"/>
+            <param name="labels" value="no" />
+            <param name="visu_choice" value="PCA" />
+            <param name="factor_choice" value="Yes" />
+            <param name="factor" value="2-lev_factor.tsv" ftype="txt"/>
+            <output name="pdf_out" file="pca.nolabels.2-lev-factor.pdf" ftype="pdf"/>
+        </test>
         <test>
             <param name="input" value="cpm_input.tsv" ftype="txt"/>
             <param name="labels" value="no" />
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2-lev_factor.tsv	Tue Jun 25 16:20:27 2019 -0400
@@ -0,0 +1,1034 @@
+id	factor
+1001000173.G8	a
+1001000173.B4	a
+1001000173.A2	a
+1001000173.E2	a
+1001000173.F6	a
+1001000173.B12	a
+1001000173.H1	a
+1001000173.E4	a
+1001000173.C2	a
+1001000173.F4	a
+1001000173.E10	a
+1001000173.E6	a
+1001000173.C4	a
+1001000173.B10	a
+1001000173.A7	a
+1001000173.B8	a
+1001000173.F9	a
+1001000173.G6	a
+1001000173.A9	a
+1001000173.D2	a
+1001000173.F2	a
+1001000173.H9	a
+1001000173.G1	a
+1001000173.B3	a
+1001000173.D7	a
+1001000173.A12	a
+1001000173.C1	a
+1001000173.H7	a
+1001000173.H5	a
+1001000173.G2	a
+1001000173.A3	a
+1001000173.D3	a
+1001000173.E1	a
+1001000173.G12	a
+1001000173.C10	a
+1001000173.C3	a
+1001000173.A5	a
+1001000173.G4	a
+1001000173.B11	a
+1001000173.G9	a
+1001000173.F1	a
+1001000173.D8	a
+1001000173.E12	a
+1001000173.F11	a
+1001000173.E5	a
+1001000173.G10	a
+1001000173.B9	a
+1001000173.C7	a
+1001000173.B2	a
+1001000173.H4	a
+1001000174.G5	a
+1001000174.H9	a
+1001000174.A10	a
+1001000174.G10	a
+1001000174.C8	a
+1001000174.F6	a
+1001000174.B4	a
+1001000174.H7	a
+1001000174.E10	a
+1001000174.D5	a
+1001000174.E5	a
+1001000174.B11	a
+1001000174.F10	a
+1001000174.A5	a
+1001000174.B8	a
+1001000174.F2	a
+1001000174.F9	a
+1001000174.F4	a
+1001000174.B6	a
+1001000174.E2	a
+1001000174.G2	a
+1001000174.D8	a
+1001000174.H6	a
+1001000174.C3	a
+1001000174.B7	a
+1001000174.A7	a
+1001000174.H10	a
+1001000174.F7	a
+1001000174.A2	a
+1001000174.E4	a
+1001000174.D12	a
+1001000174.H4	a
+1001000174.C5	a
+1001000174.E9	a
+1001000174.D1	a
+1001000174.G4	a
+1001000174.G9	a
+1001000174.D4	a
+1001000174.H11	a
+1001000174.A9	a
+1001000174.A4	a
+1001000174.C7	a
+1001000174.D11	a
+1001000174.F5	a
+1001000174.G6	a
+1001000174.D6	a
+1001000174.H3	a
+1001000174.F12	a
+1001000174.E6	a
+1001000174.G3	a
+1001000174.A8	a
+1001000174.B10	a
+1001000174.C2	a
+1001000174.F1	a
+1001000174.C11	a
+1001000174.H8	a
+1001000174.H1	a
+1001000174.G8	a
+1001000174.B5	a
+1001000174.E11	a
+1001000174.E8	a
+1001000174.F11	a
+1001000174.A1	a
+1001000174.E7	a
+1001000174.B1	a
+1001000174.C12	a
+1001000174.C9	a
+1001000174.D7	a
+1001000174.D2	a
+1001000174.C4	a
+1001000174.F8	a
+1001000174.D10	a
+1001000174.G11	a
+1001000174.A3	a
+1001000174.E3	a
+1001000174.H5	a
+1001000174.C6	a
+1001000174.D3	a
+1001000174.D9	a
+1001000175.E1	a
+1001000175.A3	a
+1001000175.C11	a
+1001000175.F3	a
+1001000175.B9	a
+1001000175.H4	a
+1001000175.G2	a
+1001000175.G11	a
+1001000175.B4	a
+1001000175.D2	a
+1001000175.C1	a
+1001000175.G7	a
+1001000175.E8	a
+1001000175.F6	a
+1001000175.H6	a
+1001000175.C7	a
+1001000175.A11	a
+1001000175.G8	a
+1001000175.A7	a
+1001000175.H5	a
+1001000175.F8	a
+1001000175.D12	a
+1001000175.A5	a
+1001000175.D4	a
+1001000175.D10	a
+1001000175.A9	a
+1001000175.H7	a
+1001000175.B1	a
+1001000175.D5	a
+1001000175.C5	a
+1001000175.B12	a
+1001000175.E3	a
+1001000175.F11	a
+1001000175.G4	a
+1001000175.C4	a
+1001000175.F9	a
+1001000175.E7	a
+1001000175.E4	a
+1001000175.G1	a
+1001000175.B10	a
+1001000175.C10	a
+1001000175.B5	a
+1001000175.D1	a
+1001000175.C2	a
+1001000175.F4	a
+1001000175.E2	a
+1001000175.H3	a
+1001000175.A4	a
+1001000175.C12	a
+1001000175.G10	a
+1001000175.F2	a
+1001000175.D11	a
+1001000175.F5	a
+1001000175.C8	a
+1001000175.F12	a
+1001000175.D3	a
+1001000175.C9	a
+1001000175.D6	a
+1001000175.E6	a
+1001000175.A6	a
+1001000175.H8	a
+1001000175.B2	a
+1001000175.B11	a
+1001000175.E10	a
+1001000175.D8	a
+1001000175.F10	a
+1001000175.E9	a
+1001000175.F7	a
+1001000175.G3	a
+1001000175.C6	a
+1001000175.E12	a
+1001000175.A12	a
+1001000175.A8	a
+1001000179.B12	a
+1001000180.A11	a
+1001000180.E10	a
+1001000180.A5	a
+1001000180.D2	a
+1001000180.D8	a
+1001000180.E1	a
+1001000180.F4	a
+1001000180.H3	a
+1001000180.D11	a
+1001000180.B3	a
+1001000180.A4	a
+1001000180.F12	a
+1001000180.E6	a
+1001000180.G1	a
+1001000180.A9	a
+1001000181.A3	a
+1001000181.E6	a
+1001000181.D5	a
+1001000181.D10	a
+1001000181.F10	a
+1001000181.C11	a
+1001000181.C6	a
+1001000181.E12	a
+1001000181.G6	a
+1001000181.B4	a
+1001000181.G8	a
+1001000181.F2	a
+1001000181.C7	a
+1001000182.A3	a
+1001000182.F4	a
+1001000182.G4	a
+1001000182.E6	a
+1001000182.C3	a
+1001000182.D1	a
+1001000182.G10	a
+1001000182.C12	a
+1001000182.D10	a
+1001000182.A5	a
+1001000182.E8	a
+1001000182.B4	a
+1001000182.F6	a
+1001000182.B12	a
+1001000182.C10	a
+1001000182.D9	a
+1001000182.A7	a
+1001000182.D11	a
+1001000182.G8	a
+1001000182.D7	b
+1001000182.F12	b
+1001000182.G1	b
+1001000182.H2	b
+1001000182.B10	b
+1001000182.H3	b
+1001000182.E2	b
+1001000182.A9	b
+1001000182.B1	b
+1001000182.B8	b
+1001000182.C8	b
+1001000182.G12	b
+1001000182.F1	b
+1001000182.E4	b
+1001000182.A11	b
+1001000182.E5	b
+1001000182.B3	b
+1001000182.F3	b
+1001000182.B11	b
+1001000182.G5	b
+1001000182.C9	b
+1001000182.D2	b
+1001000182.F2	b
+1001000182.G3	b
+1001000182.A2	b
+1001000182.C4	b
+1001000182.E7	b
+1001000182.F5	b
+1001000182.B5	b
+1001000182.F10	b
+1001000182.C11	b
+1001000182.H9	b
+1001000182.D8	b
+1001000182.G2	b
+1001000182.F11	b
+1001000182.E10	b
+1001000182.H1	b
+1001000182.C5	b
+1001000182.H4	b
+1001000182.E1	b
+1001000182.E9	b
+1001000182.B6	b
+1001000182.A6	b
+1001000182.G11	b
+1001000182.H11	b
+1001000182.C7	b
+1001000182.G7	b
+1001000182.E12	b
+1001000182.D3	b
+1001000182.G6	b
+1001000182.A8	b
+1001000183.A3	b
+1001000183.C6	b
+1001000183.F4	b
+1001000183.B8	b
+1001000183.A9	b
+1001000183.G10	b
+1001000183.F6	b
+1001000183.D4	b
+1001000183.F11	b
+1001000183.G11	b
+1001000183.E8	b
+1001000183.C11	b
+1001000183.H11	b
+1001000183.A7	b
+1001000183.B12	b
+1001000183.C8	b
+1001000183.B4	b
+1001000183.B9	b
+1001000183.H9	b
+1001000183.H2	b
+1001000183.G8	b
+1001000183.D8	b
+1001000183.A5	b
+1001000183.E6	b
+1001000183.G1	b
+1001000183.B6	b
+1001000183.E12	b
+1001000183.E4	b
+1001000183.C2	b
+1001000183.C4	b
+1001000183.D11	b
+1001000183.C9	b
+1001000183.B11	b
+1001000183.D2	b
+1001000183.A12	b
+1001000183.A8	b
+1001000183.A10	b
+1001000183.H10	b
+1001000183.F10	b
+1001000183.F5	b
+1001000183.D3	b
+1001000183.C5	b
+1001000183.B7	b
+1001000183.D10	b
+1001000183.A1	b
+1001000183.F3	b
+1001000183.F12	b
+1001000183.D9	b
+1001000183.D7	b
+1001000183.C7	b
+1001000183.E10	b
+1001000183.E7	b
+1001000183.B2	b
+1001000183.G7	b
+1001000183.E11	b
+1001000183.A4	b
+1001000183.C10	b
+1001000183.E5	b
+1001000183.B3	b
+1001000183.H1	b
+1001000183.D1	b
+1001000183.B10	b
+1001000183.F7	b
+1001000183.D6	b
+1001000183.B5	b
+1001000183.A2	b
+1001000183.E2	b
+1001000183.G5	b
+1001000183.A11	b
+1001000183.D12	b
+1001000183.C3	b
+1001000184.A1	b
+1001000184.B8	b
+1001000184.A11	b
+1001000184.B2	b
+1001000184.B9	b
+1001000184.B3	b
+1001000184.C1	b
+1001000184.A6	b
+1001000184.A4	b
+1001000184.A8	b
+1001000184.B10	b
+1001000184.B7	b
+1001000184.A9	b
+1001000184.B11	b
+1001000184.A5	b
+1001000184.A7	b
+1001000184.B5	b
+1001000184.A2	b
+1001000184.A3	b
+1001000184.D9	b
+1001000184.G11	b
+1001000184.F6	b
+1001000184.C11	b
+1001000184.D7	b
+1001000184.G5	b
+1001000184.C5	b
+1001000184.H4	b
+1001000184.E2	b
+1001000184.F10	b
+1001000184.D5	b
+1001000184.C3	b
+1001000184.H10	b
+1001000184.D10	b
+1001000184.F3	b
+1001000184.E5	b
+1001000184.H8	b
+1001000184.F12	b
+1001000184.D3	b
+1001000184.F1	b
+1001000184.F9	b
+1001000184.H9	b
+1001000184.D1	b
+1001000184.G4	b
+1001000184.H1	b
+1001000184.C6	b
+1001000184.F7	b
+1001000184.G12	b
+1001000184.E12	b
+1001000184.D6	b
+1001000184.D12	b
+1001000184.H11	b
+1001000184.H3	b
+1001000184.H6	b
+1001000184.G6	b
+1001000184.F5	b
+1001000184.E1	b
+1001000184.E10	b
+1001000184.G9	b
+1001000184.C2	b
+1001000184.D4	b
+1001000184.E11	b
+1001000184.F2	b
+1001000184.C7	b
+1001000184.E4	b
+1001000184.H7	b
+1001000184.G2	b
+1001000184.D2	b
+1001000184.C12	b
+1001000184.E6	b
+1001000184.D11	b
+1001000184.E9	b
+1001000184.G3	b
+1001000185.C9	b
+1001000185.G6	b
+1001000185.G11	b
+1001000185.C7	b
+1001000185.A5	b
+1001000185.D10	b
+1001000185.D5	b
+1001000185.A7	b
+1001000185.B12	b
+1001000185.E5	b
+1001000185.F12	b
+1001000185.D3	b
+1001000185.B9	b
+1001000185.H5	b
+1001000185.F4	b
+1001000185.C5	b
+1001000185.D2	b
+1001000185.G2	b
+1001000185.B7	b
+1001000185.A1	b
+1001000185.E3	b
+1001000185.B5	b
+1001000185.E8	b
+1001000185.G8	b
+1001000185.A3	b
+1001000185.F6	b
+1001000185.D9	b
+1001000185.G5	b
+1001000185.D7	b
+1001000185.E6	b
+1001000185.B8	b
+1001000185.D11	b
+1001000185.A4	b
+1001000185.G7	b
+1001000185.C1	b
+1001000185.H11	b
+1001000185.G12	b
+1001000185.A12	b
+1001000185.E10	b
+1001000185.H1	b
+1001000185.B6	b
+1001000185.E4	b
+1001000185.F11	b
+1001000185.B1	b
+1001000185.F1	b
+1001000185.F3	b
+1001000185.B11	b
+1001000185.C4	b
+1001000185.A9	b
+1001000185.E2	b
+1001000185.B4	b
+1001000185.D1	b
+1001000185.E9	b
+1001000185.C6	b
+1001000185.G3	b
+1001000185.C2	b
+1001000185.A2	a
+1001000185.B2	a
+1001000185.H7	a
+1001000185.E7	a
+1001000185.D12	a
+1001000185.H4	a
+1001000185.F7	a
+1001000191.B4	a
+1001000012.C7	a
+1001000012.A11	a
+1001000012.E3	a
+1001000012.E1	a
+1001000012.E10	a
+1001000012.F1	a
+1001000012.E9	a
+1001000012.G4	a
+1001000012.F6	a
+1001000012.E4	a
+1001000012.F3	a
+1001000012.H5	a
+1001000012.A9	a
+1001000012.G5	a
+1001000012.C5	a
+1001000012.A5	a
+1001000012.B1	a
+1001000012.D10	a
+1001000012.B2	a
+1001000012.G8	a
+1001000012.D5	a
+1001000012.H9	a
+1001000012.A8	a
+1001000012.E6	a
+1001000012.F2	a
+1001000012.A4	a
+1001000012.G1	a
+1001000012.F7	a
+1001000012.F4	a
+1001000012.H6	a
+1001000012.F9	a
+1001000012.C4	a
+1001000012.C6	a
+1001000012.C3	a
+1001000012.F8	a
+1001000012.G9	a
+1001000012.A1	a
+1001000012.G7	a
+1001000012.D8	a
+1001000012.G10	a
+1001000012.B3	a
+1001000012.C1	a
+1001000012.C9	a
+1001000012.B5	a
+1001000012.C10	a
+1001000012.A6	a
+1001000012.C2	a
+1001000012.G6	a
+1001000012.D4	a
+1001000012.B7	a
+1001000012.B10	a
+1001000012.B11	a
+1001000012.A10	a
+1001000012.D2	a
+1001000012.D3	a
+1001000012.H2	a
+1001000012.A3	a
+1001000012.B8	a
+1001000012.D11	a
+1001000012.H10	a
+1001000012.B6	a
+1001000012.B4	a
+1001000012.C8	a
+1001000012.D1	a
+1001000012.H7	a
+1001000012.G3	a
+1001000012.H1	a
+1001000012.A2	a
+1001000012.F5	a
+1001000012.D9	a
+1001000012.C11	a
+1001000012.H4	a
+1001000012.E7	a
+1001000012.H8	a
+1001000012.H3	a
+1001000012.G2	a
+1001000012.A7	a
+1001000012.D6	a
+1001000012.C12	a
+1001000012.F11	a
+1001000012.E12	a
+1001000012.G12	a
+1001000012.E11	a
+1001000012.B12	a
+1001000012.D12	a
+1001000012.A12	a
+1001000012.F12	a
+1001000012.G11	a
+1001000015.B2	a
+1001000017.E12	a
+1001000017.E10	a
+1001000017.F7	a
+1001000028.F6	a
+1001000028.C6	a
+1001000031.B4	a
+1001000031.B3	a
+1001000031.F12	a
+1001000031.B11	a
+1001000031.G8	a
+1001000031.H2	a
+1001000031.F6	a
+1001000031.B7	a
+1001000031.A1	a
+1001000031.F5	a
+1001000031.D8	a
+1001000031.B5	a
+1001000031.G3	a
+1001000031.D10	a
+1001000031.B8	a
+1001000031.G6	a
+1001000031.D11	a
+1001000031.A6	a
+1001000031.C12	a
+1001000031.C8	a
+1001000031.D2	a
+1001000031.A12	a
+1001000031.F2	a
+1001000031.G4	a
+1001000031.F10	a
+1001000031.C9	a
+1001000031.H5	a
+1001000031.A11	a
+1001000031.C6	a
+1001000031.E3	a
+1001000031.C7	a
+1001000031.H7	a
+1001000031.E11	a
+1001000031.G7	a
+1001000031.F11	a
+1001000031.A2	a
+1001000031.F1	a
+1001000031.G12	a
+1001000031.E2	a
+1001000031.E12	a
+1001000031.C11	a
+1001000031.A9	a
+1001000031.B9	a
+1001000031.H10	a
+1001000031.C2	a
+1001000031.G10	a
+1001000031.A10	a
+1001000031.E1	a
+1001000031.A7	a
+1001000031.C1	a
+1001000031.F9	a
+1001000031.A5	a
+1001000031.A3	a
+1001000031.B12	a
+1001000031.A4	a
+1001000031.H4	a
+1001000031.D12	a
+1001000031.E6	a
+1001000031.F4	a
+1001000031.H1	a
+1001000031.G5	a
+1001000031.H9	a
+1001000032.C4	a
+1001000032.D8	a
+1001000032.D2	a
+1001000032.F8	a
+1001000032.E9	a
+1001000032.H10	a
+1001000032.A10	a
+1001000032.C10	a
+1001000032.F11	a
+1001000032.B5	a
+1001000032.D6	a
+1001000032.D12	a
+1001000032.E10	a
+1001000032.B9	a
+1001000032.F5	a
+1001000032.B8	a
+1001000032.F6	a
+1001000032.G8	a
+1001000032.B12	a
+1001000032.C8	a
+1001000032.B6	a
+1001000032.D9	a
+1001000032.A12	a
+1001000032.C7	a
+1001000032.G10	a
+1001000032.D10	a
+1001000032.G4	a
+1001000032.B7	a
+1001000032.C11	a
+1001000032.E5	a
+1001000032.B2	a
+1001000033.F3	a
+1001000033.F12	a
+1001000036.F9	a
+1001000037.B8	a
+1001000037.G9	a
+1001000037.C9	a
+1001000037.F8	a
+1001000037.F1	a
+1001000037.C11	a
+1001000037.B10	a
+1001000037.G1	a
+1001000037.A8	a
+1001000037.B12	a
+1001000037.C7	a
+1001000037.E10	a
+1001000037.D7	a
+1001000037.F12	a
+1001000037.B11	a
+1001000037.E8	a
+1001000037.A5	a
+1001000037.G11	a
+1001000037.E7	a
+1001000037.G7	a
+1001000037.B7	a
+1001000037.G2	a
+1001000037.E3	a
+1001000037.D10	a
+1001000037.D3	a
+1001000037.B3	a
+1001000037.F10	a
+1001000037.D2	a
+1001000037.C12	a
+1001000037.B5	a
+1001000037.A10	a
+1001000037.E2	a
+1001000037.H10	a
+1001000037.G4	a
+1001000037.D4	a
+1001000037.D5	a
+1001000037.F5	a
+1001000037.F7	a
+1001000037.C3	a
+1001000037.G12	a
+1001000037.D1	a
+1001000037.F2	a
+1001000037.C4	a
+1001000037.H8	a
+1001000037.H6	a
+1001000037.C10	a
+1001000037.G3	a
+1001000037.E6	a
+1001000037.A12	a
+1001000037.A11	a
+1001000037.A1	a
+1001000037.F11	a
+1001000037.B6	b
+1001000037.A2	b
+1001000037.A6	b
+1001000037.A4	b
+1001000037.E1	b
+1001000037.G5	b
+1001000037.C5	b
+1001000037.F6	b
+1001000037.A3	b
+1001000037.G10	b
+1001000037.E4	b
+1001000037.E11	b
+1001000037.E9	b
+1001000037.H1	b
+1001000037.H3	b
+1001000037.D8	b
+1001000037.H5	b
+1001000037.D9	b
+1001000037.F4	b
+1001000037.A9	b
+1001000037.F9	b
+1001000037.B9	b
+1001000037.H7	b
+1001000037.D6	b
+1001000037.C1	b
+1001000037.H4	b
+1001000229.G2	b
+1001000229.G7	b
+1001000229.B10	b
+1001000229.E4	b
+1001000229.B4	b
+1001000229.F8	b
+1001000229.D3	b
+1001000229.C10	b
+1001000229.F5	b
+1001000230.C8	b
+1001000230.G5	b
+1001000230.F9	b
+1001000230.C4	b
+1001000230.D12	b
+1001000230.F5	b
+1001000230.E5	b
+1001000230.D3	b
+1001000230.G6	b
+1001000230.E7	b
+1001000230.C1	b
+1001000230.G8	b
+1001000230.F10	b
+1001000231.C10	b
+1001000245.E7	b
+1001000245.D7	b
+1001000245.F12	b
+1001000245.B4	b
+1001000245.E1	b
+1001000245.F2	b
+1001000245.B10	b
+1001000245.E3	b
+1001000245.D11	b
+1001000245.D8	b
+1001000245.H4	b
+1001000245.G10	b
+1001000245.F4	b
+1001000245.G12	b
+1001000245.B5	b
+1001000245.C2	b
+1001000245.F6	b
+1001000245.A10	b
+1001000245.E10	b
+1001000245.B8	b
+1001000245.H10	b
+1001000246.A12	b
+1001000246.A5	b
+1001000246.C9	b
+1001000246.G2	b
+1001000246.F10	b
+1001000246.D5	b
+1001000246.G9	b
+1001000246.B3	b
+1001000246.B1	b
+1001000246.G10	b
+1001000246.G3	b
+1001000246.D7	b
+1001000246.H11	b
+1001000246.C2	b
+1001000246.G5	b
+1001000246.A11	b
+1001000246.G8	b
+1001000246.H2	b
+1001000246.H9	b
+1001000246.C8	b
+1001000246.E9	b
+1001000246.A2	b
+1001000246.B2	b
+1001000246.D4	b
+1001000246.G4	b
+1001000246.A1	b
+1001000246.B9	b
+1001000246.B7	b
+1001000246.D6	b
+1001000247.G3	b
+1001000247.F10	b
+1001000247.G7	b
+1001000247.H5	b
+1001000247.H4	b
+1001000247.F1	b
+1001000247.G4	b
+1001000247.C3	b
+1001000249.H4	b
+1001000249.F2	b
+1001000250.C2	b
+1001000250.B8	b
+1001000250.F5	b
+1001000250.H7	b
+1001000250.F2	b
+1001000250.E2	b
+1001000250.A2	b
+1001000250.B2	b
+1001000250.G7	b
+1001000250.G1	b
+1001000250.F6	b
+1001000250.A3	b
+1001000250.C11	b
+1001000250.F7	b
+1001000250.B4	b
+1001000250.B1	b
+1001000250.G2	b
+1001000251.F5	b
+1001000251.B12	b
+1001000252.B2	b
+1001000252.G6	b
+1001000252.A6	b
+1001000252.H3	b
+1001000252.B1	b
+1001000252.C6	b
+1001000252.G9	b
+1001000252.G12	b
+1001000252.A12	b
+1001000253.B5	b
+1001000253.F6	b
+1001000253.B1	b
+1001000253.A9	b
+1001000253.G2	b
+1001000253.A11	b
+1001000253.F7	b
+1001000253.E1	b
+1001000253.B4	b
+1001000254.D8	b
+1001000254.G6	b
+1001000254.H4	b
+1001000254.A7	b
+1001000254.D9	b
+1001000254.C2	b
+1001000255.B4	b
+1001000255.C2	b
+1001000255.G1	b
+1001000255.D5	b
+1001000255.F10	b
+1001000255.F8	b
+1001000255.D12	b
+1001000258.F11	b
+1001000258.D12	b
+1001000258.C12	b
+1001000258.H5	b
+1001000258.A12	b
+1001000258.G1	b
+1001000258.H11	b
+1001000258.H1	b
+1001000258.F12	b
+1001000258.B9	b
+1001000258.G10	b
+1001000258.F7	b
+1001000258.C9	b
+1001000258.G11	b
+1001000258.G9	b
+1001000258.H10	b
+1001000258.E8	b
+1001000258.E4	b
+1001000258.D7	b
+1001000258.F6	b
+1001000259.G3	b
+1001000259.A12	b
+1001000259.F4	b
+1001000259.G6	b
+1001000259.B7	b
+1001000259.F2	b
+1001000259.C9	b
+1001000259.A4	b
+1001000259.C4	b
+1001000259.A10	b
+1001000259.G10	b
+1001000259.C2	b
+1001000259.H2	b
+1001000259.B10	b
+1001000259.F3	b
+1001000259.E2	b
+1001000259.D7	b
+1001000259.C10	b
+1001000259.B6	b
+1001000259.F11	b
+1001000259.A6	b
+1001000259.C1	b
+1001000259.E7	b
+1001000259.D2	b
+1001000259.H1	b
+1001000259.G12	b
+1001000259.G11	b
+1001000259.D5	b
+1001000259.E8	b
+1001000259.H4	b
+1001000259.G1	b
+1001000260.G9	b
+1001000260.B2	b
+1001000260.F2	b
+1001000260.A5	b
+1001000260.D5	b
+1001000260.A10	b
+1001000260.H9	b
+1001000260.B4	b
+1001000260.E2	b
+1001000260.E9	b
+1001000260.A7	b
+1001000260.C11	b
+1001000260.A1	b
+1001000260.E6	b
+1001000260.B6	b
+1001000260.G5	b
+1001000260.E4	b
+1001000260.B12	b
+1001000260.D12	b
+1001000260.B10	b
+1001000260.G7	b
+1001000260.B1	b
+1001000260.F7	b
+1001000260.D6	b
+1001000260.B5	b
+1001000260.H11	b
+1001000260.D4	b
+1001000260.G3	b
+1001000260.A2	b
+1001000260.C6	b
+1001000260.F1	b
+1001000260.B11	b
+1001000260.B9	b
+1001000260.C12	b
+1001000260.G4	b
+1001000260.F11	b
+1001000260.E12	b
+1001000260.E1	b
+1001000260.A9	b
+1001000260.A4	b
+1001000260.C10	b
+1001000260.F12	b
+1001000260.E10	b
+1001000260.C8	b
+1001000260.E5	b
+1001000260.E3	b
+1001000260.B3	b
+1001000260.D9	b
+1001000260.G10	b
+1001000267.B8	b
+1001000267.G5	b
+1001000268.D6	b
+1001000268.F6	b
+1001000268.C6	b
+1001000268.F1	b
+1001000268.H2	b
+1001000268.B2	b
+1001000268.G2	b
+1001000268.A2	b
+1001000268.H4	b
+1001000268.H5	b
+1001000268.C3	b
+1001000268.D5	b
+1001000268.C5	b
+1001000268.F5	b
+1001000268.B5	b
+1001000268.E6	b
+1001000268.E4	b
+1001000268.H3	b
+1001000268.E2	b
+1001000268.G1	b
+1001000271.B1	b
+1001000271.A3	b
Binary file test-data/pca.nolabels.2-lev-factor.pdf has changed