Mercurial > repos > artbio > gsc_signature_score
comparison signature_score.xml @ 1:01b2c4fcada8 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_signature_score commit 06c8d40814f68cbf4d24b2ea70a11407bc40d072
| author | artbio |
|---|---|
| date | Mon, 24 Jun 2019 19:17:53 -0400 |
| parents | baf7a079bce0 |
| children | e08419b8ec24 |
comparison
equal
deleted
inserted
replaced
| 0:baf7a079bce0 | 1:01b2c4fcada8 |
|---|---|
| 34 help="Comma-separated list of genes to include in signature, eg "ZNF454,GAPDH,LAIR1,ACAD9,CHTOP"" /> | 34 help="Comma-separated list of genes to include in signature, eg "ZNF454,GAPDH,LAIR1,ACAD9,CHTOP"" /> |
| 35 <param name="threshold" type="float" value="20.0" label="Threshold to keep a proposed gene in the effective signature" | 35 <param name="threshold" type="float" value="20.0" label="Threshold to keep a proposed gene in the effective signature" |
| 36 help="signature gene that are not expressed in at least this percentage of cells will not be kept to compute the effective signature" /> | 36 help="signature gene that are not expressed in at least this percentage of cells will not be kept to compute the effective signature" /> |
| 37 </inputs> | 37 </inputs> |
| 38 <outputs> | 38 <outputs> |
| 39 <data name="pdf" format="pdf" label="Plots from ${on_string}" /> | 39 <data name="pdf" format="pdf" label="Signatures plots from ${on_string}" /> |
| 40 <data name="output" format="tabular" label="signature scores from ${on_string}" /> | 40 <data name="output" format="tabular" label="signature scores from ${on_string}" /> |
| 41 <data name="stats" format="tabular" label="genes statistics in ${on_string}" /> | 41 <data name="stats" format="tabular" label="genes statistics from ${on_string}" /> |
| 42 </outputs> | 42 </outputs> |
| 43 <tests> | 43 <tests> |
| 44 <test> | 44 <test> |
| 45 <param name="input" value="gene_filtered_input.tsv" ftype="txt"/> | 45 <param name="input" value="gene_filtered_input.tsv" ftype="txt"/> |
| 46 <param name="sep" value='tab' /> | 46 <param name="sep" value='tab' /> |