Mercurial > repos > artbio > guppy_basecaller
comparison guppy_basecaller.xml @ 6:78d793671a9e draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/guppy commit eb65a3ba03e7c4470f9ccc253c68a1a822bd46f4
author | artbio |
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date | Sun, 10 Dec 2023 15:06:44 +0000 |
parents | dd0cccf3a62f |
children | 6977341bd461 |
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5:dd0cccf3a62f | 6:78d793671a9e |
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1 <tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.2.1" python_template_version="3.5"> | 1 <tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.2.2" python_template_version="3.8"> |
2 <description>A simple wrapper for guppy basecaller that depends on configuration files</description> | 2 <description>A simple wrapper for guppy basecaller that depends on configuration files</description> |
3 <requirements> | 3 <requirements> |
4 </requirements> | 4 </requirements> |
5 <command detect_errors="exit_code"><![CDATA[ | 5 <command detect_errors="exit_code"><![CDATA[ |
6 | 6 |
30 <help><![CDATA[ | 30 <help><![CDATA[ |
31 A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files, | 31 A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files, |
32 and a configuration in the form of a tar file. | 32 and a configuration in the form of a tar file. |
33 | 33 |
34 You can find configurations at https://github.com/nanoporetech/rerio, | 34 You can find configurations at https://github.com/nanoporetech/rerio, |
35 and in particular the directory https://github.com/nanoporetech/rerio/basecall_models. | 35 and in particular the directory `nanoporetech/rerio/basecall_models`. |
36 | 36 |
37 Each file there contains a URL you can download to use, for example | 37 Each file there contains a URL you can download to use, for example |
38 https://github.com/nanoporetech/rerio/blob/master/basecall_models/res_rna2_r941_min_flipflop_v001 | 38 https://github.com/nanoporetech/rerio/blob/master/basecall_models/res_rna2_r941_min_flipflop_v001 |
39 points to 'https://nanoporetech.box.com/shared/static/84e1jeudx8lr8ay7e9u1ebnvx3bk2kjf.tgz' | 39 points to 'https://nanoporetech.box.com/shared/static/84e1jeudx8lr8ay7e9u1ebnvx3bk2kjf.tgz' |
40 | 40 |