comparison guppy_basecaller.xml @ 2:cfc7ff08ad20 draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/guppy commit 0cb2fbf3fbafa26c5f2281d765d099ffe2598e5c"

1:93b6cbff5ea4

<tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.1.4" python_template_version="3.5">
    <description>A simple wrapper for guppy basecaller that depends on configuration files</description>
    <requirements>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[

        <param name="infiles" type="data_collection" format="h5" label="Fast5 input (datatype h5)" multiple="true"/>
        <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/>
    </inputs>
    <outputs>
        <data name="guppy_result" format="fastq">
            <discover_datasets directory="out/PASS" ext="fastq" pattern=".+\.fastq" visible="true"/>
        </data>
    </outputs>
    <help><![CDATA[
        A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files,
        and a configuration in the form of a tar file.

2:cfc7ff08ad20

<tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.1.5" python_template_version="3.5">
    <description>A simple wrapper for guppy basecaller that depends on configuration files</description>
    <requirements>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[

        <param name="infiles" type="data_collection" format="h5" label="Fast5 input (datatype h5)" multiple="true"/>
        <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/>
    </inputs>
    <outputs>
        <data name="guppy_result" format="fastq">
            <discover_datasets directory="out/pass" ext="fastq" pattern=".+\.fastq" visible="true"/>
        </data>
    </outputs>
    <help><![CDATA[
        A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files,
        and a configuration in the form of a tar file.