Mercurial > repos > artbio > guppy_basecaller
changeset 4:bc53d2ba84c4 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/guppy commit 690e93e439c4e1ba442ae53576095444d82df34f"
| author | artbio |
|---|---|
| date | Sat, 28 Nov 2020 15:25:16 +0000 |
| parents | df3f2f852ed5 |
| children | dd0cccf3a62f |
| files | guppy_basecaller.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/guppy_basecaller.xml Sat Nov 28 15:12:30 2020 +0000 +++ b/guppy_basecaller.xml Sat Nov 28 15:25:16 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.1.6" python_template_version="3.5"> +<tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.2.0" python_template_version="3.5"> <description>A simple wrapper for guppy basecaller that depends on configuration files</description> <requirements> </requirements> @@ -18,14 +18,14 @@ --disable_pings ### --qscore_filtering ### --calib_detect - && cat *.fastq | awk '{ if (NR%4 == 2) {gsub(/U/,"T",$1); print $1} else print }' > $output.fastq + && cat *.fastq | awk '{ if (NR%4 == 2) {gsub(/U/,"T",$1); print $1} else print }' > $output_fastq ]]></command> <inputs> <param name="infiles" type="data_collection" format="h5" label="Fast5 input (datatype h5)" multiple="true"/> <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/> </inputs> <outputs> - <data name="output.fastq" format="fastqsanger" /> + <data name="output_fastq" format="fastqsanger" /> </outputs> <help><![CDATA[ A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files,