Mercurial > repos > artbio > high_dim_heatmap
comparison heatmap.xml @ 1:58b36ae7baca draft
"planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/high_dim_heatmap commit 7c990ad7024035342c4abd6e3fa8feb1b2f2ac2c"
| author | artbio |
|---|---|
| date | Thu, 22 Oct 2020 21:47:10 +0000 |
| parents | 22d5d811dc37 |
| children | 17f627ee8f5a |
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| 0:22d5d811dc37 | 1:58b36ae7baca |
|---|---|
| 1 <tool id="high_dim_heatmap" name="Plot heatmap" version="1.0.0"> | 1 <tool id="high_dim_heatmap" name="Plot heatmap" version="1.1.0"> |
| 2 <description>with high number of rows</description> | 2 <description>with high number of rows</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.0.1">r-gplots</requirement> | 4 <requirement type="package" version="3.0.1">r-gplots</requirement> |
| 5 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement> | 5 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement> |
| 6 </requirements> | 6 </requirements> |
| 41 colorscale = colfunc <- colorRampPalette(c("white", "red")) | 41 colorscale = colfunc <- colorRampPalette(c("white", "red")) |
| 42 #elif $colorscheme == "whblu" | 42 #elif $colorscheme == "whblu" |
| 43 colorscale = colfunc <- colorRampPalette(c("white", "blue")) | 43 colorscale = colfunc <- colorRampPalette(c("white", "blue")) |
| 44 #elif $colorscheme == "blwhre" | 44 #elif $colorscheme == "blwhre" |
| 45 colorscale = colfunc <- colorRampPalette(c("blue","white", "red")) | 45 colorscale = colfunc <- colorRampPalette(c("blue","white", "red")) |
| 46 #elif $colorscheme == "yeblu" | |
| 47 colorscale = colfunc <- colorRampPalette(c("lightyellow", "royalblue4")) | |
| 46 #end if | 48 #end if |
| 47 | 49 |
| 48 #if $labels== "both" | 50 #if $labels== "both" |
| 49 rlabs = NULL | 51 rlabs = NULL |
| 50 clabs = NULL | 52 clabs = NULL |
| 136 <option value="none">Do not label rows or columns</option> | 138 <option value="none">Do not label rows or columns</option> |
| 137 </param> | 139 </param> |
| 138 <param name="colorscheme" type="select" label="Coloring groups" > | 140 <param name="colorscheme" type="select" label="Coloring groups" > |
| 139 <option value="whrd" selected="true">White to red</option> | 141 <option value="whrd" selected="true">White to red</option> |
| 140 <option value="whblu">White to blue</option> | 142 <option value="whblu">White to blue</option> |
| 143 <option value="yeblu">Yellow to blue</option> | |
| 141 <option value="blwhre">Blue to white to red</option> | 144 <option value="blwhre">Blue to white to red</option> |
| 142 </param> | 145 </param> |
| 143 <param name="scale" type="select" label="Data scaling" > | 146 <param name="scale" type="select" label="Data scaling" > |
| 144 <option value="none" selected="true">Do not scale my data</option> | 147 <option value="none" selected="true">Do not scale my data</option> |
| 145 <option value="row">Scale my data by row</option> | 148 <option value="row">Scale my data by row</option> |