comparison lumpy_smoove.xml @ 10:8711df965d4b draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/lumpy_smoove commit 355389e3d1b38d93b1bc1c683c25094d5c6f8223

9:7dcf61950215

<tool id="lumpy_smoove" name="lumpy_smoove" version="0.2.8+galaxy0">
    <description>find structural variants using the smoove workflow</description>
    <macros>
        <import>macro_lumpy_smoove.xml</import>
    </macros>
    <requirements>

            <output name="vcf_call" ftype="vcf" file="result-5.vcf" lines_diff="12"/>
        </test>
    </tests>

    <help>
**smoove** simplifies and speeds calling and genotyping SVs for short reads. It also improves
specificity by removing many spurious alignment signals that are indicative of low-level
noise and often contribute to spurious calls.

There is a blog-post describing smoove in more detail
here: https://brentp.github.io/post/smoove/

10:8711df965d4b

<tool id="lumpy_smoove" name="lumpy_smoove" version="0.2.8+galaxy1">
    <description>find structural variants using the smoove workflow</description>
    <macros>
        <import>macro_lumpy_smoove.xml</import>
    </macros>
    <requirements>

            <output name="vcf_call" ftype="vcf" file="result-5.vcf" lines_diff="12"/>
        </test>
    </tests>

    <help>
**smoove** simplifies and speeds up SV calling and genotyping for short reads. It also improves
specificity by removing many spurious alignment signals that are indicative of low-level
noise and often contribute to spurious calls.

There is a blog-post describing smoove in more detail
here: https://brentp.github.io/post/smoove/