diff test-data/result-2.vcf @ 8:b4dec06d8fc6 draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 51dc6c56c7d95fc229ffee958354211cd454fd36"

--- a/test-data/result-2.vcf	Sun Apr 18 17:08:22 2021 +0000
+++ b/test-data/result-2.vcf	Sun May 09 17:09:33 2021 +0000
@@ -1,6 +1,6 @@
 ##fileformat=VCFv4.2
 ##FILTER=<ID=PASS,Description="All filters passed">
-##fileDate=20200826
+##fileDate=20210508
 ##reference=reference.fa
 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
 ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
@@ -50,10 +50,10 @@
 ##smoove_count_stats=celegans-1:2869,2691,202,330
 ##source=LUMPY
 ##bcftools_annotateVersion=1.10.2+htslib-1.10.2
-##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Wed Aug 26 16:54:42 2020
+##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Sat May  8 19:20:59 2021
 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
 ##bcftools_viewVersion=1.10.2+htslib-1.10.2
-##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Wed Aug 26 16:54:42 2020
+##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Sat May  8 19:20:59 2021
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	celegans-1	celegans-2
 chrI	10416569	1	N	<DUP>	170.7	.	SVTYPE=DUP;SVLEN=981;END=10417550;STRANDS=-+:4;IMPRECISE;CIPOS=-769,29;CIEND=-30,636;CIPOS95=-165,8;CIEND95=-9,128;SU=4;PE=4;SR=0;AC=4;AN=4	GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB	1/1:16:130.28:-15,-4,-2:14:4:9:4:9:0:0:0:4:9:0.69	1/1:3:40.43:-4,-1,-1:7:4:3:4:3:0:0:0:4:3:0.43