Mercurial > repos > artbio > lumpy_sv

comparison pairend_distro.py @ 4:093bb151a0a8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy-sv commit 07c73df696d6d80e03f03232603d713882131625"
author artbio
date Mon, 11 May 2020 19:51:38 -0400
parents 1ed8619a5611
children 6ae3a402b9af
comparison
equal deleted inserted replaced
3:da5aae7550b3 4:093bb151a0a8
60 flag_mask = required | restricted 60 flag_mask = required | restricted
61 61
62 L = [] 62 L = []
63 c = 0 63 c = 0
64 64
65 for l in sys.stdin: 65 for length in sys.stdin:
66 if c >= options.N: 66 if c >= options.N:
67 break 67 break
68 68
69 A = l.rstrip().split('\t') 69 A = length.rstrip().split('\t')
70 flag = int(A[SAM_FLAG]) 70 flag = int(A[SAM_FLAG])
71 refname = A[SAM_REFNAME] 71 refname = A[SAM_REFNAME]
72 mate_refname = A[SAM_MATE_REFNAME] 72 mate_refname = A[SAM_MATE_REFNAME]
73 isize = int(A[SAM_ISIZE]) 73 isize = int(A[SAM_ISIZE])
74 74