Mercurial > repos > artbio > lumpy_sv

diff pairend_distro.py @ 4:093bb151a0a8 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy-sv commit 07c73df696d6d80e03f03232603d713882131625"
author artbio
date Mon, 11 May 2020 19:51:38 -0400
parents 1ed8619a5611
children 6ae3a402b9af
line wrap: on
line diff
--- a/pairend_distro.py	Thu May 07 19:38:14 2020 -0400
+++ b/pairend_distro.py	Mon May 11 19:51:38 2020 -0400
@@ -62,11 +62,11 @@
 L = []
 c = 0
 
-for l in sys.stdin:
+for length in sys.stdin:
     if c >= options.N:
         break
 
-    A = l.rstrip().split('\t')
+    A = length.rstrip().split('\t')
     flag = int(A[SAM_FLAG])
     refname = A[SAM_REFNAME]
     mate_refname = A[SAM_MATE_REFNAME]