# HG changeset patch
# User artbio
# Date 1589241098 14400
# Node ID 093bb151a0a88bea8ea52de3aadf554d9e935dd0
# Parent  da5aae7550b3382e5d2c9c0290823c1815970464
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy-sv commit 07c73df696d6d80e03f03232603d713882131625"

diff -r da5aae7550b3 -r 093bb151a0a8 lumpy.xml
--- a/lumpy.xml	Thu May 07 19:38:14 2020 -0400
+++ b/lumpy.xml	Mon May 11 19:51:38 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="lumpy" name="lumpy-sv" version="1.2.0">
+<tool id="lumpy" name="lumpy-sv" version="1.2.1">
     <description>find structural variants</description>
     <requirements>
         <requirement type="package" version="0.2.13">lumpy-sv</requirement>
diff -r da5aae7550b3 -r 093bb151a0a8 pairend_distro.py
--- a/pairend_distro.py	Thu May 07 19:38:14 2020 -0400
+++ b/pairend_distro.py	Mon May 11 19:51:38 2020 -0400
@@ -62,11 +62,11 @@
 L = []
 c = 0
 
-for l in sys.stdin:
+for length in sys.stdin:
     if c >= options.N:
         break
 
-    A = l.rstrip().split('\t')
+    A = length.rstrip().split('\t')
     flag = int(A[SAM_FLAG])
     refname = A[SAM_REFNAME]
     mate_refname = A[SAM_MATE_REFNAME]