comparison manta_macros.xml @ 2:6a69e5d7c21f draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 0c076cce96ddede06511d9fb8ebc707b9f083a1d"

1:c35d9902100e

<macros>

    <token name="@VERSION@">1.6</token>
    <token name="@WRAPPER_VERSION@">@VERSION@+galaxy3</token>
    <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>

    <token name="@set_reference_fasta_filename@"><![CDATA[
    #set $reference_fasta_filename = "localref.fa"

                <option value="cached">Use a built-in genome index</option>
                <option value="history">Use a genome from history and build index</option>
            </param>
            <when value="cached">
                <param name="index" type="select" label="Using reference genome" help="Select genome from the list">
                    <options from_data_table="all_fasta">
                        <filter type="sort_by" column="2" />
                        <validator type="no_options" message="No indexes are available" />
                    </options>
                    <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
                </param>

2:6a69e5d7c21f

<macros>

    <token name="@VERSION@">1.6</token>
    <token name="@WRAPPER_VERSION@">@VERSION@+galaxy4</token>
    <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>

    <token name="@set_reference_fasta_filename@"><![CDATA[
    #set $reference_fasta_filename = "localref.fa"

                <option value="cached">Use a built-in genome index</option>
                <option value="history">Use a genome from history and build index</option>
            </param>
            <when value="cached">
                <param name="index" type="select" label="Using reference genome" help="Select genome from the list">
                    <options from_data_table="fasta_indexes">
                        <filter type="sort_by" column="2" />
                        <validator type="no_options" message="No indexes are available" />
                    </options>
                    <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
                </param>