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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows/metavisitor_2_workflows commit 46881c948d0ad16e8c687657648402eeb5a886fb
author artbio
date Wed, 21 Aug 2019 06:30:46 -0400
parents c375489bbcb0
children
line wrap: on
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{
    "a_galaxy_workflow": "true", 
    "uuid": "224bad2a-247c-492d-b0ab-7d4ca6241d90", 
    "tags": [], 
    "format-version": "0.1", 
    "version": 0, 
    "steps": {
        "0": {
            "tool_id": "toolshed.g2.bx.psu.edu/repos/artbio/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/2.3.0", 
            "errors": null, 
            "uuid": "9c3e474c-3e57-4378-a5cc-ef9c6b7b092a", 
            "tool_version": "2.3.0", 
            "outputs": [
                {
                    "type": "fasta", 
                    "name": "outfile"
                }, 
                {
                    "type": "txt", 
                    "name": "logfile"
                }
            ], 
            "post_job_actions": {
                "RenameDatasetActionoutfile": {
                    "output_name": "outfile", 
                    "action_type": "RenameDatasetAction", 
                    "action_arguments": {
                        "newname": "Vir2"
                    }
                }
            }, 
            "workflow_outputs": [
                {
                    "output_name": "outfile", 
                    "uuid": "c65e9a65-8c83-4caa-930a-347711a3e030", 
                    "label": null
                }, 
                {
                    "output_name": "logfile", 
                    "uuid": "990bc867-6319-4e49-825c-72093dbd7b14", 
                    "label": null
                }
            ], 
            "annotation": "", 
            "content_id": "toolshed.g2.bx.psu.edu/repos/artbio/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/2.3.0", 
            "input_connections": {}, 
            "inputs": [], 
            "position": {
                "top": 275, 
                "left": 261
            }, 
            "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"queryString\": \"\\\"txid10239[Organism] NOT txid131567[Organism] NOT phage[All Fields] NOT patent[All Fields] NOT chimeric[Title] NOT vector[Title] NOT method[Title] NOT X174[All Fields] AND 30:9000[Sequence length]\\\"\", \"dbname\": \"\\\"protein\\\"\", \"dry_run\": \"\\\"false\\\"\"}", 
            "label": "Vir2", 
            "type": "tool", 
            "id": 0, 
            "tool_shed_repository": {
                "owner": "artbio", 
                "changeset_revision": "c667d0ee39f5", 
                "name": "fetch_fasta_from_ncbi", 
                "tool_shed": "toolshed.g2.bx.psu.edu"
            }, 
            "name": "Retrieve FASTA from NCBI"
        }
    }, 
    "annotation": "", 
    "name": "Metavisitor: Workflow for proteic vir2 generation"
}