comparison yac.py @ 15:ffcd42f85b61 draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts commit 5eb8570dce4e22fb2759cc16c8e1ce9d304508fe

14:c163574c246f

        else:
            block = "@HWI-{0}\n{1}\n+\n{2}\n".format(id, read, qscore)
        output.write(block)

    def handle_io(self):
        '''Open input file, pass read sequence and read qscore to clipping function.
        Pass clipped read and qscore to output function.'''
        id = 0
        output = open(self.outputfile, "a")
        with open(self.inputfile, "r") as input:
            block_gen = islice(input, 1, None, 2)
            for i, line in enumerate(block_gen):

15:ffcd42f85b61

        else:
            block = "@HWI-{0}\n{1}\n+\n{2}\n".format(id, read, qscore)
        output.write(block)

    def handle_io(self):
        '''
        Open input file, pass read sequence and read qscore
        to clipping function.
        Pass clipped read and qscore to output function.
        '''
        id = 0
        output = open(self.outputfile, "a")
        with open(self.inputfile, "r") as input:
            block_gen = islice(input, 1, None, 2)
            for i, line in enumerate(block_gen):