Mercurial > repos > artbio > mutational_patterns
comparison mutational_patterns.xml @ 27:2c9759c7ba72 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mutational_patterns commit b9ce1f9ddb27b70eea962c69d8f6fe792bb062eb
author | artbio |
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date | Sat, 10 Feb 2024 17:45:11 +0000 |
parents | af5c65ad5317 |
children | 9a33a5a90a2c |
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26:af5c65ad5317 | 27:2c9759c7ba72 |
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1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy2"> | 1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
2 <description>from genomic variations in vcf files</description> | 2 <description>from genomic variations in vcf files</description> |
3 <macros> | |
4 <token name="@TOOL_VERSION@">3.12.0</token> | |
5 <token name="@VERSION_SUFFIX@">0</token> | |
6 <token name="@PROFILE@">23.0</token> | |
7 </macros> | |
3 <requirements> | 8 <requirements> |
4 <requirement type="package" version="3.4.0=r41hdfd78af_0">bioconductor-mutationalpatterns</requirement> | 9 <requirement type="package" version="@TOOL_VERSION@">bioconductor-mutationalpatterns</requirement> |
5 <!--requirement type="package" version="1.1.1l=h7f98852_0">openssl</requirement> --> | 10 <requirement type="package" version="3.4.4">r-ggplot2</requirement> |
6 <requirement type="package" version="3.3.6=r41hc72bb7e_0">r-ggplot2</requirement> | 11 <requirement type="package" version="1.7.4">r-optparse</requirement> |
7 <requirement type="package" version="1.7.1=r41hc72bb7e_0">r-optparse</requirement> | 12 <requirement type="package" version="0.2.21">r-rjson</requirement> |
8 <requirement type="package" version="0.2.21=r41h7525677_1">r-rjson</requirement> | 13 <requirement type="package" version="0.21.0">r-nmf</requirement> |
9 <requirement type="package" version="0.21.0=r41h03ef668_1004">r-nmf</requirement> | 14 <requirement type="package" version="2.3">r-gridextra</requirement> |
10 <requirement type="package" version="2.3=r41hc72bb7e_1003">r-gridextra</requirement> | 15 <requirement type="package" version="1.4.3">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> |
11 <requirement type="package" version="1.4.3=r41hdfd78af_4">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> | 16 <requirement type="package" version="1.4.5">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement> |
12 <requirement type="package" version="1.4.4=r41hdfd78af_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement> | |
13 <!-- | 17 <!-- |
14 install more bioconda genomes | 18 install more bioconda genomes |
15 bioconductor-bsgenome.mmusculus.ucsc.mm9 | 19 bioconductor-bsgenome.mmusculus.ucsc.mm9 |
16 bioconductor-bsgenome.mmusculus.ucsc.mm10 | 20 bioconductor-bsgenome.mmusculus.ucsc.mm10 |
17 --> | 21 --> |