Mercurial > repos > artbio > mutational_patterns

comparison test-data/sigmatrix.tab @ 15:8182d1625433 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 6ca5597637439c87b61af2dbd6c38089b29eca37"
author artbio
date Sun, 03 Oct 2021 09:29:04 +0000
parents e332cf9dfa06
children 83f8c93c34b4
comparison
equal deleted inserted replaced
14:56c8869a231e 15:8182d1625433
1 substitution context NewSig_1 NewSig_2 NewSig_3 NewSig_4 1 substitution context NewSig_1 NewSig_2 NewSig_3 NewSig_4
2 C>A A.A 2.012349e-02 2.099063e-02 1.788529e-02 2.529973e-02 2 C>A A.A 1.856821e-02 2.482023e-02 1.879304e-02 2.144868e-02
3 C>A A.C 1.232623e-02 5.099845e-05 2.019020e-02 8.344265e-03 3 C>A A.C 1.985096e-02 8.856811e-03 4.176376e-03 7.275623e-03
4 C>A A.G 2.056317e-03 5.061512e-03 5.110667e-03 5.598599e-04 4 C>A A.G 4.613707e-03 1.032560e-03 7.399596e-03 1.283205e-03
5 C>A A.T 4.276274e-03 7.030586e-03 1.433976e-02 9.044799e-03 5 C>A A.T 1.077097e-02 1.152945e-02 1.110411e-02 3.506614e-03
6 C>A C.A 9.858499e-03 6.774294e-03 1.254817e-02 1.109854e-02 6 C>A C.A 1.234686e-02 1.058479e-02 7.778853e-03 8.511073e-03
7 C>A C.C 7.182083e-03 5.137412e-03 1.754580e-02 7.871756e-03 7 C>A C.C 1.527507e-02 9.706857e-03 1.091358e-02 3.977471e-03
8 C>A C.G 3.071657e-03 7.744685e-04 3.478215e-03 3.033573e-03 8 C>A C.G 3.595068e-03 3.053798e-03 1.065706e-03 2.488491e-03
9 C>A C.T 9.805120e-04 1.022892e-02 8.612445e-03 1.089991e-02 9 C>A C.T 4.654944e-03 1.331055e-02 1.146678e-02 3.015206e-03
10 C>A G.A 1.295094e-02 5.191677e-03 2.838657e-03 1.229298e-02 10 C>A G.A 5.984606e-03 9.241989e-03 1.639336e-13 1.380331e-02
11 C>A G.C 4.262714e-03 5.183579e-03 8.941540e-03 5.390685e-03 11 C>A G.C 7.683094e-03 6.339795e-03 8.137271e-03 3.391593e-03
12 C>A G.G 3.769228e-03 1.557726e-03 1.699600e-03 3.945304e-03 12 C>A G.G 2.406023e-03 3.640987e-03 1.456895e-04 3.942915e-03
13 C>A G.T 6.573060e-03 1.031818e-04 1.059791e-02 7.185424e-03 13 C>A G.T 1.020608e-02 7.739365e-03 2.399885e-03 4.235560e-03
14 C>A T.A 3.862713e-03 1.624881e-02 5.519485e-03 1.246359e-02 14 C>A T.A 3.961933e-03 1.275900e-02 1.466472e-02 6.814391e-03
15 C>A T.C 8.824563e-03 6.792814e-03 4.042968e-03 1.212436e-02 15 C>A T.C 5.337093e-03 1.162648e-02 9.105310e-04 1.013653e-02
16 C>A T.G 1.024188e-03 9.815808e-04 2.029646e-03 1.087012e-03 16 C>A T.G 1.877937e-03 6.162730e-04 1.878461e-03 6.682628e-04
17 C>A T.T 1.181704e-02 9.618044e-03 1.665114e-02 1.307952e-02 17 C>A T.T 1.560352e-02 1.326934e-02 1.247051e-02 9.445224e-03
18 C>G A.A 1.983228e-02 1.270519e-02 1.655687e-02 1.398506e-02 18 C>G A.A 1.972775e-02 1.228149e-02 1.195633e-02 1.727448e-02
19 C>G A.C 4.742892e-11 1.043116e-02 9.102239e-03 2.314023e-20 19 C>G A.C 5.836059e-03 1.655810e-03 1.694621e-02 9.062109e-07
20 C>G A.G 2.906055e-03 1.687383e-03 5.265593e-03 2.218107e-03 20 C>G A.G 5.200216e-03 2.559643e-03 3.166565e-03 1.532897e-03
21 C>G A.T 6.407465e-03 8.581278e-03 1.079483e-02 9.668306e-03 21 C>G A.T 9.324164e-03 1.095739e-02 1.081958e-02 6.258396e-03
22 C>G C.A 3.411641e-03 6.888991e-03 7.212837e-03 7.949635e-03 22 C>G C.A 5.617809e-03 9.345902e-03 8.284139e-03 3.880938e-03
23 C>G C.C 1.962245e-04 9.715947e-03 1.158418e-12 7.156965e-03 23 C>G C.C 3.534086e-20 8.210895e-03 7.727184e-03 2.254830e-03
24 C>G C.G 3.300401e-20 1.855024e-03 4.346525e-03 6.200559e-03 24 C>G C.G 2.262327e-03 7.340603e-03 3.022013e-03 9.156563e-05
25 C>G C.T 9.865314e-03 1.922285e-03 6.273441e-03 6.226190e-03 25 C>G C.T 8.224646e-03 5.017294e-03 7.003901e-04 8.665738e-03
26 C>G G.A 1.351834e-19 2.119713e-03 1.072168e-02 8.229779e-03 26 C>G G.A 6.954941e-03 1.139806e-02 4.622361e-03 3.514270e-20
27 C>G G.C 2.379848e-03 4.610717e-03 8.965747e-04 6.505033e-03 27 C>G G.C 7.064656e-04 6.998058e-03 2.537477e-03 3.965493e-03
28 C>G G.G 6.979718e-04 1.181697e-03 4.111756e-03 2.523959e-03 28 C>G G.G 3.080436e-03 3.328074e-03 2.929015e-03 1.461945e-04
29 C>G G.T 2.220903e-03 5.934769e-03 8.611327e-03 6.739344e-03 29 C>G G.T 6.360999e-03 8.512373e-03 9.008932e-03 2.005772e-03
30 C>G T.A 3.709345e-03 8.786940e-03 7.620791e-03 8.983741e-03 30 C>G T.A 5.553775e-03 1.062558e-02 9.424149e-03 4.924035e-03
31 C>G T.C 3.827093e-03 8.865683e-03 6.057793e-03 6.240498e-03 31 C>G T.C 5.248185e-03 7.233109e-03 9.634964e-03 4.359934e-03
32 C>G T.G 1.899263e-04 4.938065e-03 3.040335e-03 1.626378e-03 32 C>G T.G 1.845306e-03 2.417185e-03 6.595859e-03 6.782687e-04
33 C>G T.T 3.860261e-03 2.446381e-02 2.353559e-02 1.511199e-02 33 C>G T.T 1.587889e-02 2.049222e-02 3.439640e-02 5.050564e-03
34 C>T A.A 3.499419e-02 3.714546e-02 4.085734e-02 3.151538e-02 34 C>T A.A 3.911250e-02 3.225079e-02 4.206848e-02 3.385188e-02
35 C>T A.C 1.719840e-02 1.389005e-02 5.154001e-03 1.603745e-02 35 C>T A.C 8.757053e-03 1.352629e-02 6.991724e-03 1.974727e-02
36 C>T A.G 7.482535e-02 1.348050e-02 3.052063e-02 1.592390e-02 36 C>T A.G 5.231138e-02 1.925044e-07 3.026394e-03 6.399169e-02
37 C>T A.T 1.607143e-02 1.438585e-02 1.967215e-02 1.741898e-02 37 C>T A.T 1.874677e-02 1.836710e-02 1.620182e-02 1.541248e-02
38 C>T C.A 1.606874e-02 1.435234e-02 1.105389e-02 1.125796e-02 38 C>T C.A 1.408680e-02 9.572305e-03 1.224985e-02 1.529038e-02
39 C>T C.C 1.700219e-02 9.214402e-03 1.282668e-02 1.377429e-02 39 C>T C.C 1.412526e-02 1.293054e-02 7.720717e-03 1.618405e-02
40 C>T C.G 4.356691e-02 1.624586e-02 1.169686e-02 1.963077e-02 40 C>T C.G 2.458679e-02 1.097265e-02 2.704009e-03 4.320455e-02
41 C>T C.T 2.301602e-02 3.266347e-02 1.574218e-02 2.039183e-02 41 C>T C.T 1.682814e-02 1.962601e-02 2.870932e-02 2.757164e-02
42 C>T G.A 1.970589e-02 7.742080e-03 1.178227e-02 1.297792e-02 42 C>T G.A 1.501424e-02 1.146890e-02 4.373561e-03 1.710170e-02
43 C>T G.C 1.466426e-02 1.914382e-02 6.909098e-03 1.355502e-02 43 C>T G.C 8.581633e-03 1.197143e-02 1.469853e-02 1.798870e-02
44 C>T G.G 3.701827e-02 2.542796e-02 1.262381e-02 3.190790e-02 44 C>T G.G 2.050911e-02 2.694316e-02 1.193358e-02 4.080066e-02
45 C>T G.T 1.382222e-02 2.392818e-02 6.174897e-03 1.508942e-02 45 C>T G.T 6.725450e-03 1.485333e-02 2.022066e-02 1.821305e-02
46 C>T T.A 1.143013e-02 1.914536e-02 1.002998e-02 7.458921e-03 46 C>T T.A 9.790349e-03 7.433059e-03 1.994759e-02 1.263779e-02
47 C>T T.C 1.879514e-02 2.009898e-02 1.421423e-02 1.556176e-02 47 C>T T.C 1.594645e-02 1.460332e-02 1.802766e-02 1.886875e-02
48 C>T T.G 3.061491e-02 4.743450e-03 1.167740e-02 7.144683e-03 48 C>T T.G 2.019449e-02 4.552012e-04 8.162605e-12 2.690217e-02
49 C>T T.T 3.133938e-02 2.219653e-02 3.807693e-02 3.192865e-02 49 C>T T.T 3.604766e-02 3.365274e-02 2.789390e-02 2.769743e-02
50 T>A A.A 1.841481e-02 8.914346e-03 1.741295e-02 1.361688e-02 50 T>A A.A 1.765667e-02 1.321109e-02 1.065894e-02 1.583119e-02
51 T>A A.C 3.425691e-03 8.698638e-03 3.992626e-03 5.443164e-03 51 T>A A.C 1.820098e-03 5.510611e-03 8.183147e-03 4.599082e-03
52 T>A A.G 9.072656e-03 1.149533e-02 1.354019e-03 8.223373e-03 52 T>A A.G 4.665541e-03 6.215514e-03 6.135328e-03 1.001896e-02
53 T>A A.T 9.659453e-03 1.830189e-02 1.174139e-02 1.710128e-02 53 T>A A.T 9.785657e-03 1.833578e-02 1.768249e-02 1.248205e-02
54 T>A C.A 2.727069e-03 7.915424e-03 5.772823e-03 4.530720e-03 54 T>A C.A 4.242335e-03 5.517088e-03 9.041105e-03 3.634763e-03
55 T>A C.C 1.215316e-02 3.470147e-03 7.886743e-03 1.369393e-02 55 T>A C.C 8.948010e-03 1.166917e-02 2.179799e-05 1.148913e-02
56 T>A C.G 3.791221e-03 6.605963e-03 3.294232e-03 8.818173e-03 56 T>A C.G 2.492456e-03 9.694116e-03 4.293775e-03 5.700343e-03
57 T>A C.T 6.289729e-03 1.435186e-02 3.597548e-03 1.211551e-02 57 T>A C.T 2.882218e-03 1.297743e-02 1.071267e-02 1.009712e-02
58 T>A G.A 6.615841e-04 4.146662e-03 4.933783e-03 4.863214e-03 58 T>A G.A 3.223737e-03 6.245735e-03 5.842451e-03 9.200857e-04
59 T>A G.C 1.515807e-03 4.210462e-03 3.382936e-03 9.183128e-04 59 T>A G.C 2.805377e-03 1.213230e-03 5.828460e-03 1.503090e-03
60 T>A G.G 1.070023e-02 1.089710e-02 5.492536e-03 8.802992e-03 60 T>A G.G 6.898206e-03 7.300718e-03 8.003532e-03 1.222177e-02
61 T>A G.T 8.128051e-03 4.233917e-03 9.103699e-03 1.259684e-02 61 T>A G.T 9.120314e-03 1.347850e-02 3.249901e-03 7.453304e-03
62 T>A T.A 1.476324e-02 6.549494e-03 1.579044e-02 7.620545e-03 62 T>A T.A 1.622536e-02 6.931133e-03 9.627554e-03 1.174564e-02
63 T>A T.C 6.738527e-03 8.767946e-04 7.353978e-03 5.436410e-03 63 T>A T.C 6.760912e-03 5.595476e-03 9.698282e-04 5.499357e-03
64 T>A T.G 2.186518e-03 5.445354e-03 2.568144e-03 7.932364e-03 64 T>A T.G 1.866485e-03 8.652201e-03 2.256983e-03 3.519494e-03
65 T>A T.T 1.942541e-02 1.590353e-02 2.306069e-02 3.009347e-02 65 T>A T.T 2.145214e-02 3.177788e-02 1.505847e-02 1.981508e-02
66 T>C A.A 3.011297e-02 3.375076e-02 4.906885e-02 3.383597e-02 66 T>C A.A 4.427759e-02 3.786828e-02 4.544423e-02 2.650778e-02
67 T>C A.C 9.041893e-03 8.933211e-03 8.243474e-03 6.303632e-03 67 T>C A.C 8.998306e-03 4.599474e-03 1.004905e-02 8.722935e-03
68 T>C A.G 2.247578e-02 9.001629e-03 1.950973e-02 8.972544e-03 68 T>C A.G 2.243087e-02 6.118842e-03 1.134205e-02 1.802892e-02
69 T>C A.T 1.210116e-02 1.578255e-02 1.360358e-02 9.528566e-03 69 T>C A.T 1.373384e-02 9.886587e-03 1.685322e-02 1.176445e-02
70 T>C C.A 6.835997e-03 6.652934e-03 1.036887e-02 7.994706e-03 70 T>C C.A 8.656233e-03 9.072748e-03 8.862799e-03 6.112781e-03
71 T>C C.C 9.462334e-03 6.392714e-03 8.437885e-03 1.653238e-02 71 T>C C.C 8.714585e-03 1.690442e-02 3.565029e-03 9.871972e-03
72 T>C C.G 7.156018e-03 1.612832e-02 1.225799e-02 9.579249e-03 72 T>C C.G 1.071206e-02 1.004291e-02 1.850434e-02 7.540034e-03
73 T>C C.T 1.040136e-02 2.530647e-02 1.208573e-02 1.371705e-02 73 T>C C.T 1.017263e-02 1.448259e-02 2.608108e-02 1.403170e-02
74 T>C G.A 8.743261e-03 1.074754e-02 5.087249e-03 1.090594e-02 74 T>C G.A 5.126616e-03 1.108508e-02 8.768450e-03 1.036693e-02
75 T>C G.C 6.111817e-03 6.456267e-03 3.668932e-20 6.346677e-03 75 T>C G.C 5.204634e-12 5.747845e-03 3.143501e-03 8.849255e-03
76 T>C G.G 1.768834e-02 1.377477e-02 1.512171e-02 1.240640e-02 76 T>C G.G 1.669831e-02 1.133208e-02 1.267705e-02 1.603702e-02
77 T>C G.T 3.605052e-03 1.397132e-02 1.282818e-02 1.036663e-02 77 T>C G.T 8.671437e-03 1.325475e-02 1.721725e-02 5.039773e-03
78 T>C T.A 5.577357e-03 1.122841e-02 7.516272e-03 9.852123e-03 78 T>C T.A 6.260030e-03 1.102551e-02 1.167533e-02 7.016389e-03
79 T>C T.C 2.142753e-02 1.003311e-02 1.311934e-02 1.883301e-02 79 T>C T.C 1.517718e-02 1.699912e-02 6.470473e-03 2.077129e-02
80 T>C T.G 3.231084e-03 7.639140e-03 1.374439e-02 6.010940e-03 80 T>C T.G 9.336917e-03 8.764205e-03 1.160437e-02 2.331889e-03
81 T>C T.T 1.771125e-02 5.247659e-02 2.430165e-02 3.016747e-02 81 T>C T.T 1.903513e-02 3.432098e-02 5.540849e-02 2.562376e-02
82 T>G A.A 1.331124e-02 1.426333e-02 7.805243e-05 7.473665e-03 82 T>G A.A 3.993541e-03 4.978625e-03 8.356632e-03 1.578506e-02
83 T>G A.C 3.887921e-03 1.684454e-03 1.435130e-04 6.445063e-04 83 T>G A.C 1.728186e-03 3.099935e-20 6.777648e-15 3.511484e-03
84 T>G A.G 2.394241e-03 5.040173e-03 6.853239e-03 6.994037e-03 84 T>G A.G 5.502959e-03 8.711266e-03 5.367147e-03 2.059172e-03
85 T>G A.T 6.066623e-03 7.374853e-03 2.079215e-10 5.136694e-03 85 T>G A.T 1.499753e-03 4.210842e-03 3.978567e-03 7.977656e-03
86 T>G C.A 5.000218e-10 8.218020e-03 3.668932e-20 2.314023e-20 86 T>G C.A 3.534086e-20 4.234149e-16 8.909125e-03 1.246735e-03
87 T>G C.C 3.300401e-20 1.904378e-03 4.043369e-03 4.672135e-03 87 T>G C.C 1.909719e-03 6.194908e-03 2.037866e-03 5.448839e-04
88 T>G C.G 4.310666e-03 2.256883e-03 8.181657e-03 1.928646e-03 88 T>G C.G 7.443573e-03 2.206694e-03 4.942085e-03 2.758675e-03
89 T>G C.T 2.128603e-03 9.425709e-04 8.787753e-03 6.815812e-04 89 T>G C.T 7.417469e-03 1.454301e-03 5.521245e-03 5.632697e-19
90 T>G G.A 2.012235e-03 4.628783e-04 4.459546e-03 1.814827e-03 90 T>G G.A 4.032749e-03 2.126988e-03 2.146375e-03 9.845592e-04
91 T>G G.C 3.997247e-03 1.335924e-03 1.270853e-03 3.568581e-03 91 T>G G.C 2.308308e-03 3.091434e-03 3.322218e-20 3.632777e-03
92 T>G G.G 7.790802e-03 1.175435e-02 8.700500e-03 8.985015e-03 92 T>G G.G 8.852942e-03 9.064804e-03 1.199615e-02 7.843944e-03
93 T>G G.T 6.538479e-03 1.329525e-02 4.903674e-03 1.074729e-02 93 T>G G.T 4.276432e-03 1.084606e-02 1.101937e-02 9.425060e-03
94 T>G T.A 2.781217e-03 4.774228e-03 2.965653e-03 7.301491e-03 94 T>G T.A 2.351390e-03 8.100255e-03 3.683601e-03 3.923489e-03
95 T>G T.C 5.182071e-03 5.200467e-03 5.617300e-03 2.629881e-03 95 T>G T.C 5.580464e-03 2.444033e-03 5.806015e-03 5.018502e-03
96 T>G T.G 5.245736e-03 1.345072e-02 1.698469e-02 9.832179e-03 96 T>G T.G 1.287955e-02 1.265933e-02 1.969184e-02 4.871262e-03
97 T>G T.T 2.041928e-02 1.752970e-02 3.978473e-02 1.976735e-02 97 T>G T.T 3.545360e-02 2.295036e-02 2.946636e-02 1.477102e-02