Mercurial > repos > artbio > mutational_patterns
comparison mutational_patterns.xml @ 8:e0dad46148bf draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 75fd87e806f9bee2f6ff7fcd3834e55eb21d8710"
| author | artbio |
|---|---|
| date | Mon, 19 Oct 2020 07:47:24 +0000 |
| parents | 34626b2b9907 |
| children | 4ff3c984523b |
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| 7:34626b2b9907 | 8:e0dad46148bf |
|---|---|
| 1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy8"> | 1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy9"> |
| 2 <description>from genomic variations in vcf files</description> | 2 <description>from genomic variations in vcf files</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement> | 4 <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement> |
| 5 <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement> | 5 <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement> |
| 6 <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement> | 6 <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement> |
| 229 <param name="choices" value="yes"/> | 229 <param name="choices" value="yes"/> |
| 230 </conditional> | 230 </conditional> |
| 231 <param name="signum" value="3" /> | 231 <param name="signum" value="3" /> |
| 232 <output name="cosmic" file="cosmic_output1.pdf" compare="sim_size" ftype="pdf"/> | 232 <output name="cosmic" file="cosmic_output1.pdf" compare="sim_size" ftype="pdf"/> |
| 233 </test> | 233 </test> |
| 234 <!-- cosmic signature on single sample --> | |
| 234 <test> | 235 <test> |
| 235 <param name="vcfs"> | 236 <param name="vcfs"> |
| 236 <collection type="list"> | 237 <collection type="list"> |
| 237 <element name="1" value="G.vcf"/> | 238 <element name="1" value="G.vcf"/> |
| 238 </collection> | 239 </collection> |