# HG changeset patch
# User artbio
# Date 1602842441 0
# Node ID 34626b2b99075e9cb1b73fe51e8d3f560ea62e76
# Parent  2c1d58f5c296ccfc8a8791d832a162fe43ce4dd1
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit a9c23b9c740ae50087777e336b4775e1f8035261"

diff -r 2c1d58f5c296 -r 34626b2b9907 mutational_patterns.R
--- a/mutational_patterns.R	Fri Oct 09 17:06:51 2020 +0000
+++ b/mutational_patterns.R	Fri Oct 16 10:00:41 2020 +0000
@@ -271,7 +271,7 @@
                theme(panel.grid.minor.x = element_blank(), panel.grid.major.x = element_blank(), legend.position="right",
                      text = element_text(size=8),
                      axis.text.x = element_text(angle=90, hjust=1)) + 
-               facet_grid(~level, scales = "free_x")
+               facet_grid(~level, scales = "free_x", space="free")
         pc4_data <- pc4$data
         pc4_data <- merge (pc4_data, metadata_table[,c(1,3)], by.x="Sample", by.y="element_identifier")
         pc4 <- ggplot(pc4_data, aes(x=Sample, y=Contribution, fill=as.factor(Signature))) +
@@ -282,7 +282,7 @@
                theme(panel.grid.minor.x = element_blank(), panel.grid.major.x = element_blank(), legend.position="right",
                      text = element_text(size=8),
                      axis.text.x = element_text(angle=90, hjust=1)) + 
-               facet_grid(~level, scales = "free_x")
+               facet_grid(~level, scales = "free_x", space="free")
     }
     # Combine the two plots:
     grid.arrange(pc3, pc4, top = textGrob("Absolute and Relative Contributions of Cosmic signatures to mutational patterns",gp=gpar(fontsize=12,font=3)))
diff -r 2c1d58f5c296 -r 34626b2b9907 mutational_patterns.xml
--- a/mutational_patterns.xml	Fri Oct 09 17:06:51 2020 +0000
+++ b/mutational_patterns.xml	Fri Oct 16 10:00:41 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy7">
+<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy8">
     <description>from genomic variations in vcf files</description>
     <requirements>
         <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement>
diff -r 2c1d58f5c296 -r 34626b2b9907 test-data/cosmic_output1.pdf
Binary file test-data/cosmic_output1.pdf has changed
diff -r 2c1d58f5c296 -r 34626b2b9907 test-data/cosmic_output2.pdf
Binary file test-data/cosmic_output2.pdf has changed