# HG changeset patch
# User artbio
# Date 1600022429 0
# Node ID 924c527fb379482c258b26e22ed944b55f31a9c8

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit e1f3ca871f13569401f41a5af9d0e281bf372540"

diff -r 000000000000 -r 924c527fb379 mutational_patterns.R
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mutational_patterns.R	Sun Sep 13 18:40:29 2020 +0000
@@ -0,0 +1,126 @@
+# load packages that are provided in the conda env
+options( show.error.messages=F,
+       error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } )
+loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8")
+warnings()
+library(optparse)
+library(rjson)
+library(MutationalPatterns)
+library(ggplot2)
+
+# Arguments
+option_list = list(
+  make_option(
+    "--inputs",
+    default = NA,
+    type = 'character',
+    help = "json formatted dictionary of datasets and their paths"
+  ),
+  make_option(
+    "--genome",
+    default = NA,
+    type = 'character',
+    help = "genome name in the BSgenome bioconductor package"
+  ),
+  make_option(
+    "--levels",
+    default = NA,
+    type = 'character',
+    help = "path to the tab separated file describing the levels in function of datasets"
+  ),
+  make_option(
+    "--signum",
+    default = 2,
+    type = 'integer',
+    help = "selects the N most significant signatures in samples to express mutational patterns"
+  ),
+  make_option(
+    "--output",
+    default = NA,
+    type = 'character',
+    help = "path to output dataset"
+  )
+)
+
+opt = parse_args(OptionParser(option_list = option_list),
+                 args = commandArgs(trailingOnly = TRUE))
+
+json_dict <- opt$inputs
+parser <- newJSONParser()
+parser$addData(json_dict)
+fileslist <- parser$getObject()
+vcf_files <- attr(fileslist, "names")
+sample_names <- unname(unlist(fileslist))
+pdf(opt$output, paper = "special", width = 11.69, height = 11.69)
+ref_genome <- opt$genome
+library(ref_genome, character.only = TRUE)
+
+# Load the VCF files into a GRangesList:
+vcfs <- read_vcfs_as_granges(vcf_files, sample_names, ref_genome)
+levels_table  <- read.delim(opt$levels, header=FALSE, col.names=c("sample_name","level"))
+vcf_table <- data.frame(path=vcf_files, sample_name=sample_names)
+metadata_table <- merge(vcf_table, levels_table, by.x=2, by.y=1)
+levels <- metadata_table$level
+muts = mutations_from_vcf(vcfs[[1]])
+types = mut_type(vcfs[[1]])
+context = mut_context(vcfs[[1]], ref_genome)
+type_context = type_context(vcfs[[1]], ref_genome)
+type_occurrences <- mut_type_occurrences(vcfs, ref_genome)
+# p1 <- plot_spectrum(type_occurrences)
+# p2 <- plot_spectrum(type_occurrences, CT = TRUE)
+# p3 <- plot_spectrum(type_occurrences, CT = TRUE, legend = FALSE)
+# 
+# plot(p2)
+# p4 <- plot_spectrum(type_occurrences, by = levels, CT = TRUE, legend = TRUE)
+# palette <- c("pink", "orange", "blue", "lightblue", "green", "red", "purple")
+# p5 <- plot_spectrum(type_occurrences, CT=TRUE, legend=TRUE, colors=palette)
+# 
+# plot(p4)
+mut_mat <- mut_matrix(vcf_list = vcfs, ref_genome = ref_genome)
+# plot_96_profile(mut_mat[,1:length(as.data.frame(mut_mat))], condensed = TRUE)
+mut_mat <- mut_mat + 0.0001
+# library("NMF")
+# estimate <- nmf(mut_mat, rank=2:5, method="brunet", nrun=100, seed=123456)
+# plot(estimate)
+# nmf_res <- extract_signatures(mut_mat, rank = 4, nrun = 100)
+# colnames(nmf_res$signatures) <- c("Signature A", "Signature B", "Signature C", "Signature D")
+# rownames(nmf_res$contribution) <- c("Signature A", "Signature B", "Signature C", "Signature D")
+# plot_96_profile(nmf_res$signatures, condensed = TRUE)
+sp_url <- paste("https://cancer.sanger.ac.uk/cancergenome/assets/", "signatures_probabilities.txt", sep = "")
+cancer_signatures = read.table(sp_url, sep = "\t", header = TRUE)
+new_order = match(row.names(mut_mat), cancer_signatures$Somatic.Mutation.Type)
+cancer_signatures = cancer_signatures[as.vector(new_order),]
+row.names(cancer_signatures) = cancer_signatures$Somatic.Mutation.Type
+cancer_signatures = as.matrix(cancer_signatures[,4:33])
+# plot_96_profile(cancer_signatures, condensed = TRUE, ymax = 0.3)
+hclust_cosmic = cluster_signatures(cancer_signatures, method = "average")
+cosmic_order = colnames(cancer_signatures)[hclust_cosmic$order]
+# plot(hclust_cosmic)
+cos_sim(mut_mat[,1], cancer_signatures[,1])
+cos_sim_samples_signatures = cos_sim_matrix(mut_mat, cancer_signatures)
+plot_cosine_heatmap(cos_sim_samples_signatures, col_order = cosmic_order, cluster_rows = TRUE)
+fit_res <- fit_to_signatures(mut_mat, cancer_signatures)
+threshold <- tail(sort(unlist(rowSums(fit_res$contribution), use.names = FALSE)), opt$signum)[1]
+select <- which(rowSums(fit_res$contribution) >= threshold) # ensure opt$signum best signatures in samples are retained, the others discarded
+plot_contribution(fit_res$contribution[select,], cancer_signatures[,select], coord_flip = T, mode = "absolute")
+plot_contribution(fit_res$contribution[select,], cancer_signatures[,select], coord_flip = T, mode = "relative")
+plot_contribution_heatmap(fit_res$contribution, cluster_samples = TRUE, method = "complete")
+
+
+sig5data <- as.data.frame(t(head(fit_res$contribution[select,])))
+colnames(sig5data) <- gsub("nature", "", colnames(sig5data))
+sig5data_percents <- sig5data / (apply(sig5data,1,sum)) * 100
+sig5data_percents$sample <- rownames(sig5data_percents)
+library(reshape2)
+melted_sig5data_percents <-melt(data=sig5data_percents)
+melted_sig5data_percents$label <- sub("Sig.", "", melted_sig5data_percents$variable)
+melted_sig5data_percents$pos <- cumsum(melted_sig5data_percents$value) - melted_sig5data_percents$value/2
+ggplot(melted_sig5data_percents, aes(x="", y=value, group=variable, fill=variable)) +
+  geom_bar(width = 1, stat = "identity") +
+  geom_text(aes(label = label), position = position_stack(vjust = 0.5), color="black", size=3) +
+  coord_polar("y", start=0) + facet_wrap(~ sample) +
+  labs(x="", y="Samples", fill = "Signatures (Cosmic_v2,March 2015)") +
+    theme(axis.text = element_blank(),
+        axis.ticks = element_blank(),
+        panel.grid  = element_blank())
+dev.off()
diff -r 000000000000 -r 924c527fb379 mutational_patterns.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mutational_patterns.xml	Sun Sep 13 18:40:29 2020 +0000
@@ -0,0 +1,106 @@
+<tool id="mutational_patterns" name="Analyse Mutational Patters/Signatures" version="2.0.0_galaxy_1">
+    <description>from genomic variations in vcf files</description>
+    <requirements>
+        <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement>
+        <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement>
+        <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement>
+        <requirement type="package" version="0.21.0=r40h0357c0b_1004">r-nmf</requirement>
+        <requirement type="package" version="1.4.3=r40_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement>
+        <requirement type="package" version="0.99.1=r40_4">bioconductor-bsgenome.hsapiens.1000genomes.hs37d5</requirement>
+        <requirement type="package" version="1.4.3=r40_0">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement>
+        <requirement type="package" version="1.3.1000=r40_4">bioconductor-bsgenome.hsapiens.ncbi.grch38</requirement>
+        <!-- install bioconda genomes
+        bioconductor-bsgenome.mmusculus.ucsc.mm9
+        bioconductor-bsgenome.mmusculus.ucsc.mm10   -->                    
+    </requirements>
+    <stdio>
+        <exit_code range="1:" level="fatal" description="Tool exception" />
+    </stdio>
+
+    <command detect_errors="exit_code"><![CDATA[ 
+#import json
+#import os
+Rscript $__tool_directory__/mutational_patterns.R 
+    --inputs
+    #set $filename_to_element_identifiers = {}
+    #for $sample in $vcfs:
+        $filename_to_element_identifiers.__setitem__(str($sample),  $sample.element_identifier)
+    #end for
+    '#echo json.dumps(filename_to_element_identifiers)#'
+    --genome '$genome'
+    --levels '$levels'
+    --signum '$signum'
+    --output '$output'
+            
+]]></command>
+    <inputs>
+        <param name="vcfs" type="data_collection" format="vcf" label="VCF file(s) collection" multiple="true"/>
+        <param name="genome" type="select" label="Reference Genome">
+            <option value="BSgenome.Hsapiens.1000genomes.hs37d5">BSgenome.Hsapiens.1000genomes.hs37d5</option>
+            <option value="BSgenome.Hsapiens.NCBI.GRCh38">BSgenome.Hsapiens.NCBI.GRCh38</option>
+            <option value="BSgenome.Hsapiens.UCSC.hg19">BSgenome.Hsapiens.UCSC.hg19</option>
+            <option value="BSgenome.Hsapiens.UCSC.hg38" selected="true">BSgenome.Hsapiens.UCSC.hg38</option>
+            <!--<option value="BSgenome.Mmusculus.UCSC.mm10">BSgenome.Mmusculus.UCSC.mm10</option>
+            <option value="BSgenome.Mmusculus.UCSC.mm9">BSgenome.Mmusculus.UCSC.mm9</option>-->
+        </param>
+        <param name="levels" type="data" format="tabular"
+               label="A two-column tab-separated file describing levels attributed to each sample name"
+               help="Tip: the sample name list in the vcf collection can be obtained using
+               the IUC Galaxy tool 'Extract element identifiers of a list collection' &lt;br&gt;
+               example:&lt;br&gt;
+               sample1 female&lt;br&gt;
+               sample2 female&lt;br&gt;
+               sample3 male&lt;br&gt;
+               sample4 female&lt;br&gt;
+               sample5 male&lt;br&gt;
+               sample5 male" />
+        <param name="signum" type="integer" value="2" min="2" max="30"
+               label="selects the N most significant signatures in samples to express mutational patterns"
+               help="an integer between 2 and 30 signature types from cosmic"/>
+
+    </inputs>
+    <outputs>
+        <data name="output" format="pdf" label="Mutational Patterns/Signatures" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="vcfs">
+                <collection type="list">
+                    <element name="1" value="EGF167.vcf"/>
+                    <element name="2" value="EGF089.vcf"/>
+                    <element name="3" value="EGF037F.vcf"/>
+                </collection>
+            </param>
+            <param name="genome" value="BSgenome.Hsapiens.UCSC.hg38"/>
+            <param name="levels" value="levels.tab" ftype="tabular"/>
+            <param name="signum" value="3" />
+            <output name="output" file="output.pdf" compare="sim_size" ftype="pdf"/>
+        </test>
+    </tests>
+    <help>
+
+**What it does**
+
+Takes as inputs
+
+* a collection of n vcf files corresponding to n samples.
+* a tabular table describing the correspondance of sample names to levels (tissues, ages, sexes, etc.)
+* the number of cosmic signatures to decompose mutational patterns of samples
+
+
+This tool returns a pdf file with the visualisation :
+
+* the Cosine similarity of samples when decomposed over the 30 signatures of cosmic
+* the absolute contribution of the n most contributing cosmic signatures in the samples mutational patterns (to be set by the user, between 2 and 30)
+* the relative contribution of the n most contributing cosmic signatures in the samples mutational patterns  (to be set by the user, between 2 and 30)
+* a clustering of the samples with respect to the relative contribution of their cosmic signatures
+* pie charts of the samples displaying for each sample the relative contribution of the n most contributing cosmic signatures in their mutational pattern
+
+
+    </help>
+    <citations>
+        <citation type="doi">10.18129/B9.bioc.MutationalPatterns</citation>
+        <citation type="doi">10.1186/s13073-018-0539-0</citation>
+        <citation type="doi">10.1038/nature12477</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r 924c527fb379 test-data/EGF037F.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/EGF037F.vcf	Sun Sep 13 18:40:29 2020 +0000
@@ -0,0 +1,4331 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##reference=hg38
+##source=varscan.py
+##contig=<ID=chr1,length=248956422>
+##contig=<ID=chr10,length=133797422>
+##contig=<ID=chr11,length=135086622>
+##contig=<ID=chr12,length=133275309>
+##contig=<ID=chr13,length=114364328>
+##contig=<ID=chr14,length=107043718>
+##contig=<ID=chr15,length=101991189>
+##contig=<ID=chr16,length=90338345>
+##contig=<ID=chr17,length=83257441>
+##contig=<ID=chr18,length=80373285>
+##contig=<ID=chr19,length=58617616>
+##contig=<ID=chr2,length=242193529>
+##contig=<ID=chr20,length=64444167>
+##contig=<ID=chr21,length=46709983>
+##contig=<ID=chr22,length=50818468>
+##contig=<ID=chr3,length=198295559>
+##contig=<ID=chr4,length=190214555>
+##contig=<ID=chr5,length=181538259>
+##contig=<ID=chr6,length=170805979>
+##contig=<ID=chr7,length=159345973>
+##contig=<ID=chr8,length=145138636>
+##contig=<ID=chr9,length=138394717>
+##contig=<ID=chrM,length=16569>
+##contig=<ID=chrX,length=156040895>
+##contig=<ID=chrY,length=57227415>
+##filter="SOMATIC"
+##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
+##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
+##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
+##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
+##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
+##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
+##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
+##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
+##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads">
+##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05">
+##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90">
+##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1">
+##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1">
+##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100">
+##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15">
+##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15">
+##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01">
+##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90">
+##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1">
+##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1">
+##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15">
+##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15">
+##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100">
+##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50">
+##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50">
+##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50">
+##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50">
+##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
+##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand">
+##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TUMOR
+chr1	184576	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.019075;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:6,3:30,6
+chr1	269371	.	A	G	0	PASS	DP=109;GPV=1;SPV=0.01875;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:21,3:19,5
+chr1	283183	.	C	G	0	PASS	DP=118;GPV=1;SPV=0.0053658;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:21,8:22,2
+chr1	738332	.	C	T	0	PASS	DP=104;GPV=1;SPV=0.043011;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:33,8:3,1
+chr1	738586	.	G	A	0	PASS	DP=161;GPV=1;SPV=9.9539e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:57,13:25,5:32,8
+chr1	738733	.	T	C	0	PASS	DP=123;GPV=1;SPV=0.016466;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:20,5:25,3
+chr1	1028545	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.043159;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,2:5,1
+chr1	1573439	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:14:0,2:0,1:0,1
+chr1	2071063	.	C	T	0	PASS	DP=72;GPV=1;SPV=0.011351;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:10,1:4,5
+chr1	2342857	.	AT	A	0	PASS	DP=55;GPV=1;SPV=0.044297;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:6,2:12,3
+chr1	2671870	.	C	A	0	PASS	DP=196;GPV=1;SPV=0.00012417;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:10,3:5,2
+chr1	2672087	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.0012127;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:3,2:8,3
+chr1	3927491	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,6:4,3:4,3
+chr1	4079275	.	G	A	0	PASS	DP=67;GPV=1;SPV=1.6102e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:13,9:8,6
+chr1	4173876	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.0022746;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:11,8:10,2
+chr1	4318436	.	T	TA	0	PASS	DP=34;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:8,1:6,3
+chr1	4530714	.	A	C	0	PASS	DP=55;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:5,2:2,1:3,1
+chr1	5796213	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.084408;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:16,3:8,2:8,1
+chr1	6641377	.	CAA	C	0	PASS	DP=36;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,7:7,6:7,1
+chr1	6926438	.	C	CTCTTTCTT	0	PASS	DP=49;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,7:1,1:11,6
+chr1	7913728	.	GTT	G	0	PASS	DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,1:5,3
+chr1	8574368	.	G	A	0	PASS	DP=25;GPV=1;SPV=0.017149;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:1,1:5,7
+chr1	8852528	.	AAAAGAAAG	A	0	PASS	DP=37;GPV=1;SPV=0.0087276;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:4,5:7,4
+chr1	11854533	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,2:1,1:3,1
+chr1	12897156	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:6,3:0,0
+chr1	12939075	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.026469;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:5,1:9,6
+chr1	13046693	.	C	A	0	PASS	DP=35;GPV=1;SPV=0.021584;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:5,1:5,3
+chr1	13150128	.	C	G	0	PASS	DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,2:3,2
+chr1	13155510	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:3,2:7,5
+chr1	13369851	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.018596;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:18,4:9,3
+chr1	16164067	.	A	T	0	PASS	DP=50;GPV=1;SPV=0.020191;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,10:8,5:8,5
+chr1	16536071	.	G	A	0	PASS	DP=384;GPV=1;SPV=0.044443;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:167:148,19:78,12:70,7
+chr1	16550749	.	C	A	0	PASS	DP=78;GPV=1;SPV=0.044689;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:22,6:15,6
+chr1	16560810	.	C	T	0	PASS	DP=253;GPV=1;SPV=0.048505;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:112:96,16:48,9:48,7
+chr1	16564382	.	G	C	0	PASS	DP=354;GPV=1;SPV=0.030816;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:140,16:104,6:36,10
+chr1	16571744	.	C	T	0	PASS	DP=211;GPV=1;SPV=0.018301;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:86,17:47,8:39,9
+chr1	16571771	.	G	A	0	PASS	DP=217;GPV=1;SPV=0.045999;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:92,17:45,9:47,8
+chr1	16576444	.	G	C	0	PASS	DP=201;GPV=1;SPV=0.031308;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:80,15:31,3:49,12
+chr1	16577822	.	T	C	0	PASS	DP=176;GPV=1;SPV=0.025445;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:60,14:24,5:36,9
+chr1	16599312	.	C	T	0	PASS	DP=217;GPV=1;SPV=0.037127;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:87,16:50,5:37,11
+chr1	16601408	.	T	C	0	PASS	DP=213;GPV=1;SPV=0.042617;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:79,18:31,4:48,14
+chr1	16603496	.	C	T	0	PASS	DP=208;GPV=1;SPV=0.037802;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:85,15:47,8:38,7
+chr1	16618314	.	G	C	0	PASS	DP=198;GPV=1;SPV=0.014024;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:86,16:38,6:48,10
+chr1	16624325	.	G	A	0	PASS	DP=354;GPV=1;SPV=0.023677;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:152:126,26:59,14:67,12
+chr1	16628633	.	A	G	0	PASS	DP=246;GPV=1;SPV=0.042221;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:95,20:51,10:44,10
+chr1	16656288	.	G	C	0	PASS	DP=185;GPV=1;SPV=0.007124;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:64,19:31,13:33,6
+chr1	16674958	.	A	G	0	PASS	DP=164;GPV=1;SPV=0.014272;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:71,10:39,9:32,1
+chr1	16708815	.	C	G	0	PASS	DP=86;GPV=1;SPV=0.0043049;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:29,16:12,11:17,5
+chr1	16733054	.	C	T	0	PASS	DP=269;GPV=1;SPV=0.039538;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:126:108,18:44,8:64,10
+chr1	16756749	.	A	G	0	PASS	DP=201;GPV=1;SPV=0.045414;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:89,15:43,9:46,6
+chr1	16795485	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:7,2:0,5
+chr1	17257031	.	CA	C	0	PASS	DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:8,5:0,1
+chr1	18014818	.	A	T	0	PASS	DP=65;GPV=1;SPV=0.016282;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:19,2:9,4
+chr1	19019158	.	A	T	0	PASS	DP=68;GPV=1;SPV=1.2113e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:16,19:5,11:11,8
+chr1	19410476	.	G	A	0	PASS	DP=56;GPV=1;SPV=6.5658e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,3:7,6
+chr1	19611469	.	A	ATTT	0	PASS	DP=37;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,4:7,3:4,1
+chr1	22555088	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,2:2,1:5,1
+chr1	22992252	.	CA	C	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:5,3:2,1
+chr1	23826355	.	TTGG	T	0	PASS	DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:11,2:5,2
+chr1	23881611	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.00061448;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,3:3,3
+chr1	23979057	.	G	GT	0	PASS	DP=32;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,9:3,8:4,1
+chr1	24049441	.	T	A	0	PASS	DP=25;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,2:3,1:4,1
+chr1	24196805	.	T	G	0	PASS	DP=18;GPV=1;SPV=0.00761;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:2,7:1,3:1,4
+chr1	25464338	.	CTT	C	0	PASS	DP=22;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:1,3:4,1
+chr1	27454650	.	T	A	0	PASS	DP=64;GPV=1;SPV=0.00011345;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:12,4:5,5
+chr1	28262621	.	C	CAAAAAAAA	0	PASS	DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:7,4:0,0
+chr1	28540810	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.0055741;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:2,6:3,1
+chr1	30054513	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.043924;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:11,4:8,2
+chr1	30480962	.	ATGTGTGTG	A	0	PASS	DP=31;GPV=1;SPV=0.0059154;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:4,5:0,1
+chr1	31255828	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:14,1:10,3
+chr1	36962640	.	A	AAG	0	PASS	DP=37;GPV=1;SPV=0.00074257;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:7,5:3,4
+chr1	37702951	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.022117;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:9,5:8,3
+chr1	40922013	.	G	GT	0	PASS	DP=81;GPV=1;SPV=1.223e-06;SS=2;SSC=59;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:10,6:8,6
+chr1	40998789	.	T	C	0	PASS	DP=58;GPV=1;SPV=3.2959e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:4,3:9,10
+chr1	42355597	.	A	AAAAAAAAT	0	PASS	DP=35;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,7:2,2:5,5
+chr1	42819170	.	C	CGT	0	PASS	DP=41;GPV=1;SPV=0.026067;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:9,3:2,2
+chr1	42922001	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:7,2:4,1:3,1
+chr1	43117234	.	G	C	0	PASS	DP=60;GPV=1;SPV=0.030658;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:7,3:15,1
+chr1	43461485	.	C	CTCTCTTTCTCTT	0	PASS	DP=38;GPV=1;SPV=0.0077055;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:1,4:5,2
+chr1	43817407	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.086154;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,2:0,1:6,1
+chr1	45774703	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.017094;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:1,2:4,1
+chr1	47097820	.	A	AT	0	PASS	DP=51;GPV=1;SPV=0.035434;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,3:7,1
+chr1	48980718	.	AATATATATATATATATATATATATATATATAT	A	0	PASS	DP=19;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:3,2:1,4
+chr1	49370145	.	TTA	T	0	PASS	DP=54;GPV=1;SPV=0.0080525;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:9,5:10,4
+chr1	49972516	.	G	A	0	PASS	DP=65;GPV=1;SPV=1.9869e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:21,16:11,10:10,6
+chr1	50729058	.	A	T	0	PASS	DP=32;GPV=1;SPV=0.04741;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,8:8,2:5,6
+chr1	51081004	.	G	C	0	PASS	DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:4,4:1,1
+chr1	52093630	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.035721;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:4,3:2,1
+chr1	52266405	.	TAAA	T	0	PASS	DP=30;GPV=1;SPV=0.010883;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:2,2:1,3
+chr1	52964214	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:3,5:8,3
+chr1	55273567	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:6,2:5,2
+chr1	56723946	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.00051333;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:13,3:8,5
+chr1	57768175	.	T	TAA	0	PASS	DP=21;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,5:1,4:0,1
+chr1	68047321	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:10,6:9,2
+chr1	68213451	.	CA	C	0	PASS	DP=36;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:12,3:5,2
+chr1	68982123	.	C	T	0	PASS	DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:6,2:6,7
+chr1	70297287	.	A	G	0	PASS	DP=16;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chr1	70647900	.	TAC	T	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,2:5,2
+chr1	70981312	.	CTTCCTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCT	C	0	PASS	DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:2,2:14,2
+chr1	71155378	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.00022877;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:11,6:13,5
+chr1	75302112	.	G	GTT	0	PASS	DP=21;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,4:6,3:0,1
+chr1	76669544	.	T	TTTTTTTTA	0	PASS	DP=47;GPV=1;SPV=0.00012488;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:5,6:7,4
+chr1	77304407	.	TTTC	T	0	PASS	DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,3:14,1
+chr1	78238004	.	C	A	0	PASS	DP=22;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:3,1:2,1
+chr1	78690904	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,10:1,6:2,4
+chr1	79201821	.	A	AGGAGGAGGAGGAGGAGGAGGG	0	PASS	DP=31;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:4,3:6,1
+chr1	79959408	.	C	T	0	PASS	DP=72;GPV=1;SPV=4.6582e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,14:10,7:10,7
+chr1	83303544	.	C	CAAA	0	PASS	DP=18;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,6:0,3:1,3
+chr1	83359203	.	G	T	0	PASS	DP=16;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,3:1,2:2,1
+chr1	84311332	.	T	TAA	0	PASS	DP=34;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:6,5:4,1
+chr1	85296311	.	C	CT	0	PASS	DP=20;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,3:1,3
+chr1	85536978	.	TATATATAC	T	0	PASS	DP=36;GPV=1;SPV=0.020557;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,2:5,4
+chr1	86200361	.	C	CAAAAA	0	PASS	DP=19;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:4,4:0,0
+chr1	88097222	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.0007761;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:3,2:10,5
+chr1	89653369	.	A	G	0	PASS	DP=70;GPV=1;SPV=2.4236e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,16:13,6:3,10
+chr1	90406935	.	A	T	0	PASS	DP=50;GPV=1;SPV=0.065063;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:17,6:12,3
+chr1	91144703	.	G	A	0	PASS	DP=67;GPV=1;SPV=5.0341e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,18:7,9:7,9
+chr1	91364001	.	T	TATGGAGGGGAACACATTGGGAC	0	PASS	DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,3:3,3
+chr1	92507111	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,3:11,1
+chr1	92814250	.	A	ATT	0	PASS	DP=32;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:8,4:5,3
+chr1	93998713	.	A	ATTTAT	0	PASS	DP=53;GPV=1;SPV=0.019226;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:9,7:8,2
+chr1	94295709	.	A	ATC	0	PASS	DP=31;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:7,3:5,1
+chr1	95074345	.	TC	T	0	PASS	DP=39;GPV=1;SPV=0.016596;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:2,3:9,1
+chr1	96005255	.	T	A	0	PASS	DP=31;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,3:4,2:1,1
+chr1	96140608	.	CT	C	0	PASS	DP=18;GPV=1;SPV=0.040043;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:1,5:1,4:0,1
+chr1	97362616	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.0003089;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:12,5:13,7
+chr1	97904795	.	G	GTAT	0	PASS	DP=50;GPV=1;SPV=0.00019093;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:8,5:6,5
+chr1	98348089	.	CT	C	0	PASS	DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:2,3:3,2
+chr1	100159600	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,3:3,2
+chr1	100358293	.	C	T	0	PASS	DP=65;GPV=1;SPV=6.1031e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:11,4:8,7
+chr1	102966708	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.031813;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,4:4,2:6,2
+chr1	104873363	.	GGAAAA	G	0	PASS	DP=28;GPV=1;SPV=0.0081269;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,5:2,4:2,1
+chr1	105426794	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.049127;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:15,3:11,1
+chr1	105746932	.	T	G	0	PASS	DP=54;GPV=1;SPV=0.00065827;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:12,7:8,5
+chr1	106712000	.	A	T	0	PASS	DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:4,2:6,3
+chr1	106812711	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.00076161;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:4,6:4,5
+chr1	107049529	.	GGTT	G	0	PASS	DP=26;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:1,3:7,2
+chr1	108523875	.	TATATATATG	T	0	PASS	DP=29;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:3,1:6,3
+chr1	108771460	.	AATAT	A	0	PASS	DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,3:9,1
+chr1	108772352	.	A	ATATC	0	PASS	DP=31;GPV=1;SPV=0.015732;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,3:4,1
+chr1	108954010	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.014656;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:7,6:6,2
+chr1	109852477	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.00073537;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:7,5:8,2
+chr1	111062544	.	T	A	0	PASS	DP=48;GPV=1;SPV=5.5082e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:6,4:4,5
+chr1	111227411	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:14,4:10,1
+chr1	111615829	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.010926;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:4,4:4,3
+chr1	111908435	.	C	T	0	PASS	DP=63;GPV=1;SPV=3.1845e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:17,16:10,10:7,6
+chr1	112474079	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.0011868;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:2,3:5,8
+chr1	112484222	.	T	TATATATACAC	0	PASS	DP=39;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,5:7,2:2,3
+chr1	113509914	.	C	T	0	PASS	DP=52;GPV=1;SPV=0.0005553;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:12,8:4,1
+chr1	113584966	.	C	CAATTT	0	PASS	DP=27;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,2:8,2
+chr1	114205271	.	ATATATGTGAT	A	0	PASS	DP=36;GPV=1;SPV=0.15966;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:17,3:5,2:12,1
+chr1	115791931	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.00012315;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:4,2:9,6
+chr1	115792300	.	GTAGTA	G	0	PASS	DP=42;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,6:4,1:4,5
+chr1	116770414	.	G	GGAGAGAGA	0	PASS	DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:11,4:6,1
+chr1	117127034	.	T	TC	0	PASS	DP=47;GPV=1;SPV=0.022163;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,7:1,1:10,6
+chr1	118576067	.	C	G	0	PASS	DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,1:3,5
+chr1	119265512	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.011129;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:5,6:2,1
+chr1	119500265	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.011012;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:4,6:4,1
+chr1	120187664	.	G	A	0	PASS	DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:7,3:6,4
+chr1	120456434	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.0039871;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:8,3:6,9
+chr1	120458978	.	C	G	0	PASS	DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:8,4:0,0
+chr1	120999034	.	T	G	0	PASS	DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,1:6,3
+chr1	121016463	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:8,1:16,3
+chr1	121049803	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.057887;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:13,1:14,4
+chr1	121447300	.	A	T	0	PASS	DP=51;GPV=1;SPV=1.0919e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,13:7,8:5,5
+chr1	121741553	.	G	C	0	PASS	DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:4,2:3,5
+chr1	122138830	.	T	C	0	PASS	DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:0,0:13,4
+chr1	122284147	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.001014;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:9,2:17,11
+chr1	122333339	.	G	C	0	PASS	DP=77;GPV=1;SPV=0.03926;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:19,6:11,2
+chr1	122382656	.	C	G	0	PASS	DP=239;GPV=1;SPV=0.03683;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:129:109,20:37,2:72,18
+chr1	122404413	.	G	T	0	PASS	DP=124;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:47,5:4,1
+chr1	123755350	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.03024;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:19,4:0,0
+chr1	124819577	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:3,2:6,4
+chr1	124862955	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,1:4,4
+chr1	124924067	.	C	T	0	PASS	DP=19;GPV=1;SPV=0.12384;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:7,3:5,2:2,1
+chr1	124935455	.	G	C	0	PASS	DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:0,0:9,4
+chr1	125141871	.	TTTC	T	0	PASS	DP=92;GPV=1;SPV=0.018195;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:15,4:17,8
+chr1	143194701	.	C	T	0	PASS	DP=198;GPV=1;SPV=0.042501;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:85,13:31,11:54,2
+chr1	143234677	.	G	A	0	PASS	DP=168;GPV=1;SPV=0.0080857;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:74,9:7,2:67,7
+chr1	143262456	.	G	A	0	PASS	DP=5138;GPV=1;SPV=0.049301;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:2584:2270,265:755,71:1515,194
+chr1	143393078	.	T	C	0	PASS	DP=29;GPV=1;SPV=0.013894;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:0,0:7,4
+chr1	144031996	.	GTT	G	0	PASS	DP=36;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:6,3:11,3
+chr1	144500177	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:6,3:5,1
+chr1	144569911	.	CTGTGTG	C	0	PASS	DP=38;GPV=1;SPV=0.0049438;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,6:2,2:1,4
+chr1	144772388	.	C	A	0	PASS	DP=59;GPV=1;SPV=0.020233;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:4,4:12,4
+chr1	145129856	.	G	C	0	PASS	DP=65;GPV=1;SPV=2.728e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,15:8,5:9,10
+chr1	145259810	.	C	CAACATCA	0	PASS	DP=62;GPV=1;SPV=0.018191;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:12,2:8,4
+chr1	145986946	.	C	CA	0	PASS	DP=27;GPV=1;SPV=0.011858;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:19:4,15:2,13:2,2
+chr1	146136588	.	C	A	0	PASS	DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:10,1:8,4
+chr1	146740554	.	G	A	0	PASS	DP=37;GPV=1;SPV=0.0052707;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,2:5,6
+chr1	147608330	.	C	CTTTT	0	PASS	DP=25;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:4,3:2,1
+chr1	148560207	.	C	G	0	PASS	DP=126;GPV=1;SPV=0.023176;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:58,8:37,6:21,2
+chr1	148838480	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr1	149080154	.	C	G	0	PASS	DP=125;GPV=1;SPV=0.045884;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:54,10:22,1:32,9
+chr1	150453034	.	CT	C	0	PASS	DP=42;GPV=1;SPV=0.010243;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:9,6:4,2
+chr1	152234092	.	T	G	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:8,1:7,3
+chr1	152234093	.	A	T	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:8,1:7,3
+chr1	152234095	.	AGT	A	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,1:6,3
+chr1	153917795	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.0068571;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:10,3:9,3
+chr1	154024688	.	A	AT	0	PASS	DP=25;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:2,8:0,3:2,5
+chr1	154032950	.	GAAGAAAAGAA	G	0	PASS	DP=19;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:2,7:1,4:1,3
+chr1	155348913	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,3:2,2:2,1
+chr1	155422303	.	A	AT	0	PASS	DP=35;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:5,4:6,4
+chr1	156930100	.	T	TC	0	PASS	DP=27;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,9:2,7:4,2
+chr1	157349714	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,5:0,1:8,4
+chr1	157618389	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.0044113;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:9,4:14,5
+chr1	157712211	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,6:4,5:2,1
+chr1	159075613	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:9,3:8,1
+chr1	160735894	.	A	T	0	PASS	DP=27;GPV=1;SPV=0.0051869;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:3,5:5,5
+chr1	160918153	.	AT	A	0	PASS	DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,2:13,3
+chr1	161064827	.	GAAAGAGAA	G	0	PASS	DP=36;GPV=1;SPV=0.048962;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:9,2:2,3
+chr1	161423322	.	TG	T	0	PASS	DP=31;GPV=1;SPV=0.13793;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:13,3:6,2:7,1
+chr1	161569065	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,1:9,3
+chr1	161600163	.	T	C	0	PASS	DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:4,3:2,3
+chr1	161658875	.	T	A	0	PASS	DP=89;GPV=1;SPV=0.038053;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:19,8:14,1
+chr1	164065177	.	C	T	0	PASS	DP=64;GPV=1;SPV=0.049522;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:12,1:15,3
+chr1	165581230	.	A	ACACATG	0	PASS	DP=59;GPV=1;SPV=0.013457;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:17,7:8,5
+chr1	167200851	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:10,2:2,2
+chr1	168110527	.	A	C	0	PASS	DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:5,3:2,1
+chr1	168110531	.	AG	A	0	PASS	DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,3:4,1
+chr1	168933831	.	C	CTT	0	PASS	DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,4:3,1
+chr1	169075433	.	A	AATATATATATATATATATAT	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,3:5,1
+chr1	169342576	.	GTA	G	0	PASS	DP=33;GPV=1;SPV=0.034205;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,2:2,2
+chr1	170854867	.	A	G	0	PASS	DP=56;GPV=1;SPV=5.5032e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:9,7:4,6
+chr1	171100237	.	G	C	0	PASS	DP=50;GPV=1;SPV=0.0001432;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:7,10:8,2
+chr1	171577770	.	C	CATA	0	PASS	DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:7,6:0,2
+chr1	173340323	.	TAC	T	0	PASS	DP=48;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:5,10:4,8:1,2
+chr1	173834744	.	T	TC	0	PASS	DP=22;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:3,2:1,3
+chr1	174069508	.	A	AT	0	PASS	DP=33;GPV=1;SPV=0.0099416;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,5:4,4:5,1
+chr1	174349588	.	AC	A	0	PASS	DP=38;GPV=1;SPV=0.13514;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:17,3:11,2:6,1
+chr1	174634305	.	A	C	0	PASS	DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:4,5:12,4
+chr1	175547605	.	G	C	0	PASS	DP=42;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:9,3:4,1
+chr1	176122139	.	C	CA	0	PASS	DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:7,5:3,2
+chr1	177110790	.	A	T	0	PASS	DP=66;GPV=1;SPV=7.8832e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:8,8:12,3
+chr1	177402840	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.13137;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:17,1:14,4
+chr1	178006272	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.08111;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:17,2:8,2
+chr1	178076750	.	C	CT	0	PASS	DP=39;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:7,7:6,3
+chr1	178574225	.	C	CTGTG	0	PASS	DP=56;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,1:7,3
+chr1	178695883	.	T	C	0	PASS	DP=36;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,4:10,1:7,3
+chr1	178975705	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,1:11,3
+chr1	179335015	.	CA	C	0	PASS	DP=28;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:4,6:4,5:0,1
+chr1	179462679	.	T	C	0	PASS	DP=56;GPV=1;SPV=3.5908e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,13:6,6:10,7
+chr1	180350023	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,3:3,1:0,2
+chr1	180613394	.	GT	G	0	PASS	DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:8,4:7,6
+chr1	183773015	.	CAAAAAAAAAAAAAAA	C	0	PASS	DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,4:2,2
+chr1	184275120	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.010777;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:11,2:6,4
+chr1	187288570	.	T	C	0	PASS	DP=70;GPV=1;SPV=2.5724e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:9,6:10,9
+chr1	188474530	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.0074494;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,7:6,5:5,2
+chr1	188886337	.	CTCTT	C	0	PASS	DP=50;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,8:4,2:8,6
+chr1	189686809	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,4:9,1:6,3
+chr1	191617509	.	A	C	0	PASS	DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,3:14,1
+chr1	194698876	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:10,5:4,3
+chr1	194895616	.	G	T	0	PASS	DP=57;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:6,4:3,2:3,2
+chr1	195451267	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.019281;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,4:12,1
+chr1	195742125	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:3,4:4,2
+chr1	196759540	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:5,3:9,1
+chr1	197793654	.	AAG	A	0	PASS	DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:4,1:3,3
+chr1	198440146	.	C	T	0	PASS	DP=43;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,5:7,1:6,4
+chr1	201800444	.	T	TA	0	PASS	DP=70;GPV=1;SPV=1.0913e-06;SS=2;SSC=59;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,17:10,8:9,9
+chr1	204146286	.	A	AAGCTC	0	PASS	DP=62;GPV=1;SPV=0.0024076;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:13,2:8,5
+chr1	205193870	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,5:12,4:4,1
+chr1	207796693	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.034056;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,7:4,2:2,5
+chr1	208200577	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,6:1,4:2,2
+chr1	210799575	.	C	A	0	PASS	DP=57;GPV=1;SPV=0.0027818;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:7,3:10,3
+chr1	211196099	.	C	CAAAA	0	PASS	DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:8,4:6,2
+chr1	211496361	.	C	CT	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,3:3,1
+chr1	211622573	.	CT	C	0	PASS	DP=51;GPV=1;SPV=0.022724;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,4:6,2:3,2
+chr1	212248907	.	GA	G	0	PASS	DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:5,9:3,1
+chr1	215463441	.	G	A	0	PASS	DP=52;GPV=1;SPV=1.1679e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:2,2:8,8
+chr1	216245470	.	T	TGAGAGAGA	0	PASS	DP=28;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,6:5,2:1,4
+chr1	217141024	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.064844;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:17,3:13,2
+chr1	218798280	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:3,4:2,3
+chr1	219409446	.	A	T	0	PASS	DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:7,3:8,2
+chr1	219589948	.	G	T	0	PASS	DP=69;GPV=1;SPV=0.0049862;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:15,4:12,3
+chr1	222488807	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.044218;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:38,9:21,6:17,3
+chr1	222595802	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.0036482;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,9:3,1:3,8
+chr1	223050053	.	CTT	C	0	PASS	DP=29;GPV=1;SPV=0.00072464;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,9:4,7:2,2
+chr1	223439757	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,5:3,3:6,2
+chr1	224102822	.	A	G	0	PASS	DP=43;GPV=1;SPV=0.024795;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,3:8,1
+chr1	227315955	.	C	CAAAAA	0	PASS	DP=32;GPV=1;SPV=0.016809;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,6:9,5:2,1
+chr1	230038404	.	A	AAAGAAAG	0	PASS	DP=51;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,4:13,1:11,3
+chr1	230156233	.	A	AAG	0	PASS	DP=29;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:4,3:3,2
+chr1	232271499	.	A	ATCTCTCTCTCTCTC	0	PASS	DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:5,1:8,3
+chr1	232759266	.	CTT	C	0	PASS	DP=43;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,7:6,2:4,5
+chr1	234780250	.	T	C	0	PASS	DP=190;GPV=1;SPV=0.0024028;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:70,20:39,8:31,12
+chr1	235217432	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.025971;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:6,4:9,3
+chr1	235217437	.	C	CATATACATACATACACTCACAT	0	PASS	DP=50;GPV=1;SPV=0.0022188;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,7:3,5:6,2
+chr1	235220795	.	T	G	0	PASS	DP=61;GPV=1;SPV=0.0015078;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:8,3:11,4
+chr1	235924960	.	CACACACAT	C	0	PASS	DP=22;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,4:3,2:1,2
+chr1	236390941	.	G	GTTATTATTATTATTATTA	0	PASS	DP=26;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,9:3,5:1,4
+chr1	238891518	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:8,2:16,3
+chr1	239249557	.	T	TTTTATTTATTTATTTATTTA	0	PASS	DP=29;GPV=1;SPV=0.002122;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:4,3:1,2
+chr1	239933754	.	GAAAGAAAGAAAGAA	G	0	PASS	DP=27;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,6:6,5:0,1
+chr1	240479086	.	TA	T	0	PASS	DP=27;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,6:2,5:1,1
+chr1	240812437	.	C	CTT	0	PASS	DP=38;GPV=1;SPV=0.016795;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,7:7,6:4,1
+chr1	241235918	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.071698;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:13,2:10,3
+chr1	241705558	.	TA	T	0	PASS	DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,3:11,1
+chr1	241960337	.	A	AT	0	PASS	DP=53;GPV=1;SPV=0.024029;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:9,6:10,4
+chr1	243854312	.	GTTTT	G	0	PASS	DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,1:6,4
+chr1	243972195	.	T	TC	0	PASS	DP=35;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,6:2,4:5,2
+chr1	245103006	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.016411;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:8,1:7,7
+chr1	245192248	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.0025268;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:7,4:6,2
+chr1	245299320	.	GTT	G	0	PASS	DP=30;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,4:8,2:2,2
+chr1	246535521	.	A	ATTTTCTTTTTTTTTTTC	0	PASS	DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:1,4:6,2
+chr1	246619881	.	ACT	A	0	PASS	DP=42;GPV=1;SPV=0.07108;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:15,3:4,1:11,2
+chr1	247837462	.	AAAAAG	A	0	PASS	DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:4,4:9,3
+chr1	248354980	.	GAATT	G	0	PASS	DP=47;GPV=1;SPV=0.010107;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:7,3:8,2
+chr10	862256	.	T	TAA	0	PASS	DP=21;GPV=1;SPV=0.0090299;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:2,2:1,2
+chr10	940012	.	AT	A	0	PASS	DP=40;GPV=1;SPV=0.013021;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:7,2:6,3
+chr10	1010151	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.041156;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:10,1:14,6
+chr10	1015706	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.032107;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:4,3:2,2
+chr10	1015709	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,3:2,2
+chr10	1015710	.	C	G	0	PASS	DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:5,3:1,2
+chr10	1992884	.	C	T	0	PASS	DP=54;GPV=1;SPV=8.0714e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:8,8:7,3
+chr10	2029107	.	A	T	0	PASS	DP=46;GPV=1;SPV=0.015873;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:8,4:8,4
+chr10	2350964	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.038561;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,3:12,1
+chr10	2510784	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.032518;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:5,1:11,3
+chr10	2511571	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.012445;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:6,4:6,6
+chr10	2511572	.	T	TA	0	PASS	DP=42;GPV=1;SPV=0.00534;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,10:6,4:6,6
+chr10	2536476	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:12,2:9,2
+chr10	2561419	.	C	T	0	PASS	DP=68;GPV=1;SPV=3.7015e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,18:9,8:5,10
+chr10	3252001	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:2,1:4,1
+chr10	3457411	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.022311;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,1:2,5
+chr10	3771027	.	TTC	T	0	PASS	DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:10,3:4,7
+chr10	4209012	.	C	CAGAGAG	0	PASS	DP=30;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,6:2,5:2,1
+chr10	4665375	.	C	CAA	0	PASS	DP=39;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:4,13:3,11:1,2
+chr10	4738997	.	AT	A	0	PASS	DP=41;GPV=1;SPV=0.21429;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:2,2:1,1:1,1
+chr10	5304010	.	C	A	0	PASS	DP=61;GPV=1;SPV=0.078413;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,2:14,2
+chr10	6093178	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.016464;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:6,3:14,3
+chr10	8332995	.	CCTCTT	C	0	PASS	DP=25;GPV=1;SPV=0.011858;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:1,2:3,3
+chr10	11497411	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.01463;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,8:7,6:4,2
+chr10	11711365	.	AAAATAAATAAAT	A	0	PASS	DP=33;GPV=1;SPV=0.010062;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,7:2,3:4,4
+chr10	12281275	.	T	TA	0	PASS	DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,2:9,2
+chr10	14008162	.	C	CTGTGTGTGTGTG	0	PASS	DP=29;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,4:3,3:2,1
+chr10	15329629	.	A	T	0	PASS	DP=48;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:1,2:0,1:1,1
+chr10	16546145	.	G	C	0	PASS	DP=59;GPV=1;SPV=5.4215e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,19:6,7:8,12
+chr10	17223725	.	G	A	0	PASS	DP=66;GPV=1;SPV=3.5134e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,16:4,4:11,12
+chr10	17628955	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.0063217;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:4,1:7,8
+chr10	18634768	.	CA	C	0	PASS	DP=48;GPV=1;SPV=0.037605;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:10,1:7,5
+chr10	19088536	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.0019118;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:4,5:4,2
+chr10	19237572	.	ATATAATTATAATTATATAATTATATAAT	A	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,2:4,2
+chr10	19292894	.	A	C	0	PASS	DP=30;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:6,3:3,1:3,2
+chr10	19447041	.	AACACACACACACACACACACATACACAGACAC	A	0	PASS	DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:8,4:6,2
+chr10	20072481	.	CAAAG	C	0	PASS	DP=33;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:9,7:2,1
+chr10	21316823	.	A	AT	0	PASS	DP=43;GPV=1;SPV=0.0091635;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,8:8,6:9,2
+chr10	21968504	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.0033467;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:6,5:8,3
+chr10	22716451	.	A	C	0	PASS	DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:12,3:6,4
+chr10	23212778	.	T	TGA	0	PASS	DP=37;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,9:3,7:4,2
+chr10	24449324	.	AT	A	0	PASS	DP=62;GPV=1;SPV=0.042266;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:14,3:7,2
+chr10	24924710	.	G	GA	0	PASS	DP=46;GPV=1;SPV=0.023752;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,3:6,1
+chr10	25303385	.	C	A	0	PASS	DP=52;GPV=1;SPV=0.0088503;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:10,4:11,3
+chr10	27685443	.	ATTTT	A	0	PASS	DP=31;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,6:2,5:4,1
+chr10	27923993	.	A	AGG	0	PASS	DP=35;GPV=1;SPV=0.020833;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,6:6,2
+chr10	28325998	.	T	G	0	PASS	DP=30;GPV=1;SPV=0.0046299;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:0,2:7,9
+chr10	28325999	.	C	A	0	PASS	DP=31;GPV=1;SPV=0.0033618;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,13:1,4:6,9
+chr10	28902067	.	ATATT	A	0	PASS	DP=55;GPV=1;SPV=0.01858;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:10,5:10,6
+chr10	29268495	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.0098662;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:17,3:8,4
+chr10	29902732	.	T	TTATATA	0	PASS	DP=20;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:1,2:2,3
+chr10	31562426	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.0041401;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:9,3:9,5
+chr10	32828458	.	AGAAGAAGAG	A	0	PASS	DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,2:2,2
+chr10	33077355	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,3:3,2:2,1
+chr10	34383705	.	T	G	0	PASS	DP=41;GPV=1;SPV=0.082759;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,2:4,1:3,1
+chr10	34573738	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.012097;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:3,1:5,3
+chr10	35587354	.	GTCTCTCTCTCTCTCTCTC	G	0	PASS	DP=34;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,8:5,6:4,2
+chr10	35652253	.	CCCTT	C	0	PASS	DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:1,0:9,4
+chr10	37030816	.	ATTTTTTTTTTTTTT	A	0	PASS	DP=21;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:1,4:4,1
+chr10	37641011	.	G	T	0	PASS	DP=52;GPV=1;SPV=5.8393e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:5,6:5,5
+chr10	38129304	.	T	TAAAA	0	PASS	DP=42;GPV=1;SPV=0.013906;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,11:8,9:5,2
+chr10	38177616	.	C	CTT	0	PASS	DP=28;GPV=1;SPV=0.00028986;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:3,4:2,5
+chr10	38270480	.	C	CAA	0	PASS	DP=51;GPV=1;SPV=0.034379;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:4,3:14,3
+chr10	38460833	.	GT	G	0	PASS	DP=75;GPV=1;SPV=0.031786;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:12,6:16,2
+chr10	38528482	.	T	A	0	PASS	DP=197;GPV=1;SPV=0.02621;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:57,8:23,4:34,4
+chr10	38636396	.	T	C	0	PASS	DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:18,3:18,1
+chr10	38661131	.	T	C	0	PASS	DP=99;GPV=1;SPV=0.019409;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:29,10:11,5
+chr10	38679100	.	C	CAAA	0	PASS	DP=32;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,10:3,8:4,2
+chr10	38869089	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.037959;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,4:7,3:4,1
+chr10	38969052	.	A	ATAATT	0	PASS	DP=76;GPV=1;SPV=0.035742;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,5:13,2:21,3
+chr10	39276187	.	G	T	0	PASS	DP=57;GPV=1;SPV=0.0013091;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:7,4:10,3
+chr10	41311337	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.015183;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:10,2:14,8
+chr10	41498724	.	A	G	0	PASS	DP=205;GPV=1;SPV=0.0055633;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:71,10:60,8:11,2
+chr10	41498775	.	G	T	0	PASS	DP=263;GPV=1;SPV=0.01217;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:106,12:77,7:29,5
+chr10	41584224	.	A	T	0	PASS	DP=477;GPV=1;SPV=0.0064468;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:229:199,30:145,22:54,8
+chr10	41588208	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.026691;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:12,2:8,4
+chr10	41589576	.	C	T	0	PASS	DP=128;GPV=1;SPV=0.041092;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:50,7:4,4:46,3
+chr10	41883926	.	G	C	0	PASS	DP=77;GPV=1;SPV=0.006408;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:15,1:7,7
+chr10	41904677	.	TTGGAA	T	0	PASS	DP=163;GPV=1;SPV=0.004862;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:57,16:25,5:32,11
+chr10	41913976	.	C	A	0	PASS	DP=222;GPV=1;SPV=0.02271;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:86,18:33,14:53,4
+chr10	42070560	.	C	T	0	PASS	DP=7830;GPV=1;SPV=0.025336;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:3811:3377,416:3054,375:323,41
+chr10	42130201	.	C	G	0	PASS	DP=467;GPV=1;SPV=0.01108;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:208,25:74,8:134,17
+chr10	42157887	.	G	A	0	PASS	DP=117;GPV=1;SPV=0.043444;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:50,11:32,7:18,4
+chr10	42157986	.	CAT	C	0	PASS	DP=209;GPV=1;SPV=0.048686;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:91,16:57,12:34,4
+chr10	42315581	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:0,3:0,1:0,2
+chr10	42772046	.	GGC	G	0	PASS	DP=38;GPV=1;SPV=1.4316e-05;SS=2;SSC=48;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,13:7,9:0,4
+chr10	42968800	.	TCAAAGACTATGATCATTTTTAAG	T	0	PASS	DP=59;GPV=1;SPV=0.0022404;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:12,4:5,2
+chr10	42968825	.	T	C	0	PASS	DP=64;GPV=1;SPV=0.0023621;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:10,4:9,2
+chr10	45836143	.	T	C	0	PASS	DP=70;GPV=1;SPV=0.02714;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:11,7:14,1
+chr10	46363734	.	G	T	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:5,3:10,1
+chr10	46601432	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.021449;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:13,4:10,1
+chr10	46786273	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:14,1:13,3
+chr10	46786415	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.0053319;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,11:14,6:12,5
+chr10	48300206	.	T	A	0	PASS	DP=44;GPV=1;SPV=0.10989;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,2:2,1:1,1
+chr10	48920722	.	C	G	0	PASS	DP=66;GPV=1;SPV=0.00030577;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:11,6:11,4
+chr10	48953335	.	A	T	0	PASS	DP=41;GPV=1;SPV=0.064595;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:15,4:4,1
+chr10	49104962	.	CAG	C	0	PASS	DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:4,8:3,2
+chr10	49682597	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.0001999;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:3,4:2,5
+chr10	50116473	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:11,3:3,2
+chr10	50164442	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,1:7,3
+chr10	50748900	.	T	G	0	PASS	DP=53;GPV=1;SPV=0.036288;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,1:9,3
+chr10	51156323	.	A	ACACACACACACACACACC	0	PASS	DP=41;GPV=1;SPV=0.0053105;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,5:4,4:5,1
+chr10	52939279	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.025045;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:10,2:10,2
+chr10	55084458	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:6,4:4,1
+chr10	55192730	.	T	G	0	PASS	DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:12,3:8,1
+chr10	55418614	.	G	T	0	PASS	DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:10,6:8,6
+chr10	55537439	.	T	G	0	PASS	DP=68;GPV=1;SPV=0.017193;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:19,3:8,5
+chr10	55894485	.	G	T	0	PASS	DP=56;GPV=1;SPV=0.00063544;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:9,8:12,4
+chr10	56911826	.	C	A	0	PASS	DP=59;GPV=1;SPV=7.2622e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,14:4,7:8,7
+chr10	57270463	.	C	CA	0	PASS	DP=35;GPV=1;SPV=0.017674;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,5:8,3:2,2
+chr10	57509335	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:0,6:0,3:0,3
+chr10	58946152	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:11,2:14,3
+chr10	59748091	.	G	GT	0	PASS	DP=40;GPV=1;SPV=0.015939;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:13,6:3,1
+chr10	61048481	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.00034257;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:13,5:8,10
+chr10	62430253	.	GT	G	0	PASS	DP=32;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:2,3:3,2
+chr10	63031554	.	T	A	0	PASS	DP=44;GPV=1;SPV=0.00026061;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:7,5:5,5
+chr10	63314956	.	G	GT	0	PASS	DP=34;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:9,6:1,1
+chr10	63742380	.	A	T	0	PASS	DP=48;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:17,3:4,3
+chr10	64077470	.	T	G	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr10	64530430	.	A	ATG	0	PASS	DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:9,6:4,1
+chr10	65555929	.	C	CAAAAAAAA	0	PASS	DP=35;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,6:4,5:4,1
+chr10	66157510	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.19426;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,5:12,4:16,1
+chr10	66346234	.	TATATATATATATAGAGAGAGAGAGAGAG	T	0	PASS	DP=28;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:8,4:1,1
+chr10	66767456	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:6,7:4,1
+chr10	67420280	.	AT	A	0	PASS	DP=70;GPV=1;SPV=0.00036759;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:11,7:16,5
+chr10	67762186	.	A	C	0	PASS	DP=34;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,2:1,1:2,1
+chr10	69539382	.	A	AGAAGAGGAAGAG	0	PASS	DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,2:0,2
+chr10	71926124	.	T	TTG	0	PASS	DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:2,2:9,2
+chr10	72448151	.	C	G	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:4,1:3,1
+chr10	74011165	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:6,4:1,1
+chr10	74961333	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.00043265;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:12,6:5,4
+chr10	76077992	.	ATTTTTTT	A	0	PASS	DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:7,3:5,3
+chr10	76627257	.	AGTGTGTGTGTGTGT	A	0	PASS	DP=27;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,4:2,3:4,1
+chr10	77171402	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.2364;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:15,1:6,4
+chr10	77324940	.	ACTCTCTCTCT	A	0	PASS	DP=35;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,5:10,3:3,2
+chr10	78148347	.	T	TC	0	PASS	DP=57;GPV=1;SPV=0.0013435;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:9,1:10,7
+chr10	78759385	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,2:6,2:0,0
+chr10	79700446	.	T	C	0	PASS	DP=74;GPV=1;SPV=0.048408;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:14,6:10,3
+chr10	79773554	.	AT	A	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:3,1:9,3
+chr10	80032868	.	T	TAAA	0	PASS	DP=30;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,2:3,1:0,1
+chr10	80041722	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.0047619;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:0,6:0,2:0,4
+chr10	80534827	.	A	G	0	PASS	DP=30;GPV=1;SPV=0.036526;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,3:1,1
+chr10	81510195	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:4,5:6,3
+chr10	82109581	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.041502;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,3:4,2:2,1
+chr10	83040096	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.00042856;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:7,4:3,3
+chr10	84157895	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,2:5,6
+chr10	85120251	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,4:5,2:4,2
+chr10	86340312	.	G	T	0	PASS	DP=65;GPV=1;SPV=0.00014662;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:10,5:8,4
+chr10	87203329	.	A	ATGTGTGTG	0	PASS	DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,9:7,8:2,1
+chr10	87239603	.	G	T	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,2:6,2
+chr10	87592174	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.035604;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:6,2:9,4
+chr10	92098160	.	TAAAAAAAAAAAAA	T	0	PASS	DP=24;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:3,3:6,1
+chr10	92966287	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.054106;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:3,1:8,4
+chr10	93188392	.	TG	T	0	PASS	DP=57;GPV=1;SPV=0.0036233;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:8,6:7,6
+chr10	93693518	.	TATATATATACACC	T	0	PASS	DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,3:6,1
+chr10	94530854	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.010883;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:2,3:1,2
+chr10	95041787	.	CAAAAA	C	0	PASS	DP=28;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:7,7:3,1
+chr10	97700201	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:16,3:18,1
+chr10	97700202	.	C	G	0	PASS	DP=73;GPV=1;SPV=0.056634;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:17,2:20,3
+chr10	97700203	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.051231;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:15,2:19,3
+chr10	99198067	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:8,8:6,2
+chr10	99401166	.	C	A	0	PASS	DP=59;GPV=1;SPV=2.4155e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:6,7:6,5
+chr10	99600898	.	TC	T	0	PASS	DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:9,3:13,1
+chr10	99825071	.	T	G	0	PASS	DP=59;GPV=1;SPV=0.046347;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:14,1:9,5
+chr10	100694253	.	C	A	0	PASS	DP=51;GPV=1;SPV=3.2757e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:7,7:6,5
+chr10	101429504	.	T	TC	0	PASS	DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,0:8,4
+chr10	102476042	.	G	GTT	0	PASS	DP=37;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,5:8,4:6,1
+chr10	102476051	.	G	T	0	PASS	DP=41;GPV=1;SPV=0.00014085;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,13:5,6:5,7
+chr10	102476052	.	G	T	0	PASS	DP=40;GPV=1;SPV=9.186e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,16:5,8:4,8
+chr10	103265250	.	AAAAG	A	0	PASS	DP=37;GPV=1;SPV=0.0027776;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:5,4:4,5
+chr10	105454819	.	C	CTA	0	PASS	DP=18;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,2:4,2:0,0
+chr10	105672567	.	C	CTTT	0	PASS	DP=23;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,6:2,4:0,2
+chr10	105782821	.	CTT	C	0	PASS	DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:4,4:1,1
+chr10	105825981	.	C	T	0	PASS	DP=45;GPV=1;SPV=2.5102e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:5,6:1,4
+chr10	106774426	.	A	AGT	0	PASS	DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:7,2:13,4
+chr10	106994063	.	C	CA	0	PASS	DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,7:9,6:1,1
+chr10	108584901	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.00045891;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:8,6:12,5
+chr10	109346489	.	A	AT	0	PASS	DP=55;GPV=1;SPV=0.0336;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,4:8,3:12,1
+chr10	109533268	.	T	TAA	0	PASS	DP=39;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:6,10:2,7:4,3
+chr10	109742465	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:9,7:7,1
+chr10	111192642	.	G	GA	0	PASS	DP=33;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:7,5:2,3
+chr10	111342364	.	C	T	0	PASS	DP=56;GPV=1;SPV=2.0246e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:17,19:8,7:9,12
+chr10	112744459	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:4,3:6,6
+chr10	115000596	.	A	AAGAG	0	PASS	DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:13,1:4,3
+chr10	115515318	.	C	CTT	0	PASS	DP=33;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,8:0,5:3,3
+chr10	115661890	.	G	T	0	PASS	DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:0,0:6,4
+chr10	118879687	.	A	AAGAAAGAAAGAAAGAG	0	PASS	DP=38;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:0,5:0,2:0,3
+chr10	118924791	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:10,2:12,4
+chr10	120990546	.	G	GTT	0	PASS	DP=22;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:5,3:2,2
+chr10	121200757	.	T	TA	0	PASS	DP=45;GPV=1;SPV=0.00544;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:8,9:7,2
+chr10	121385846	.	C	CAA	0	PASS	DP=18;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,5:1,4:1,1
+chr10	123094546	.	C	G	0	PASS	DP=50;GPV=1;SPV=4.2836e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:9,6:4,6
+chr10	124912341	.	CT	C	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:5,2:2,2
+chr10	125889586	.	G	C	0	PASS	DP=122;GPV=1;SPV=0.0019405;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:54,9:43,8:11,1
+chr10	128205910	.	G	C	0	PASS	DP=60;GPV=1;SPV=1.5174e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:8,5:5,5
+chr10	128219388	.	C	T	0	PASS	DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:0,2:4,2
+chr10	128430438	.	C	T	0	PASS	DP=77;GPV=1;SPV=1.8089e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,17:13,11:10,6
+chr10	128924462	.	C	CTATCATCTATCT	0	PASS	DP=40;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,8:4,2:2,6
+chr10	129736461	.	C	A	0	PASS	DP=44;GPV=1;SPV=0.004671;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:4,6:9,3
+chr10	129736462	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.0054795;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:5,7:10,3
+chr10	129736463	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.0068797;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:5,7:10,3
+chr10	130655022	.	CAG	C	0	PASS	DP=24;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:3,3:2,2
+chr10	132218551	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.033939;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:15,4:11,1
+chr10	132268768	.	CCTGT	C	0	PASS	DP=29;GPV=1;SPV=0.010572;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:5,5:1,1
+chr10	132548792	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,3:1,1
+chr10	133011539	.	AGTGTGTGATGTGTGTTAGC	A	0	PASS	DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:12,2:10,2
+chr10	133658890	.	C	T	0	PASS	DP=199;GPV=1;SPV=0.010381;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:81,19:48,11:33,8
+chr11	194825	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:3,3:9,1
+chr11	1681722	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:3,5:8,1
+chr11	1681723	.	C	A	0	PASS	DP=35;GPV=1;SPV=0.015843;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:3,5:6,1
+chr11	1874014	.	G	C	0	PASS	DP=25;GPV=1;SPV=0.024224;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:6,2:2,3
+chr11	3204328	.	G	GCAGGCACC	0	PASS	DP=44;GPV=1;SPV=0.027558;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,7:12,5:8,2
+chr11	3702326	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,6:2,2:5,4
+chr11	4229359	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.0053956;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:10,4:5,7
+chr11	4318596	.	T	A	0	PASS	DP=97;GPV=1;SPV=0.031452;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:45,15:21,2:24,13
+chr11	4322328	.	G	T	0	PASS	DP=105;GPV=1;SPV=0.043254;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:44,8:21,7:23,1
+chr11	4360623	.	G	GA	0	PASS	DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:10,2:12,2
+chr11	4453530	.	ATTTTTTTTTTTT	A	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:2,2:5,2
+chr11	6989150	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,5:6,4:4,1
+chr11	7745587	.	C	A	0	PASS	DP=57;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:33:1,3:0,0:1,3
+chr11	8979905	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:4,3:7,4
+chr11	12608045	.	CA	C	0	PASS	DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:3,7:3,1
+chr11	13020278	.	C	CAAA	0	PASS	DP=29;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,6:4,5:4,1
+chr11	15814860	.	A	G	0	PASS	DP=49;GPV=1;SPV=7.0087e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:7,7:3,5
+chr11	16177623	.	C	A	0	PASS	DP=54;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:5,2:2,1:3,1
+chr11	17317974	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:8,2:5,3
+chr11	18076632	.	AAAG	A	0	PASS	DP=28;GPV=1;SPV=0.047343;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,4:3,2:3,2
+chr11	19036353	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.0022441;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,16:8,7:7,9
+chr11	19709546	.	CAA	C	0	PASS	DP=33;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,6:4,4:3,2
+chr11	19861261	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.01632;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:12,1:14,5
+chr11	21185293	.	CTT	C	0	PASS	DP=28;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,4:2,2:1,2
+chr11	22978993	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,1:5,3
+chr11	23077020	.	TAGATATGAAACATCTGTACACTGAATAGTATAAAACA	T	0	PASS	DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:5,3:13,1
+chr11	23723103	.	A	G	0	PASS	DP=36;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,4:2,3:3,1
+chr11	24122300	.	T	A	0	PASS	DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:15,3:10,1
+chr11	25136860	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.00011229;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:16,10:14,4
+chr11	25635713	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.016747;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:6,4:11,6
+chr11	25642808	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.00048101;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:9,18:5,9:4,9
+chr11	27463067	.	C	CA	0	PASS	DP=27;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,6:1,5:3,1
+chr11	28236433	.	G	T	0	PASS	DP=50;GPV=1;SPV=0.00052187;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:9,5:6,4
+chr11	28287156	.	ATG	A	0	PASS	DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,7:3,6:0,1
+chr11	29179215	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.0013136;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,3:4,3
+chr11	29506307	.	G	T	0	PASS	DP=57;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:9,5:8,8
+chr11	31283971	.	C	CCT	0	PASS	DP=32;GPV=1;SPV=0.0059539;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,14:3,7:5,7
+chr11	31840982	.	CCTTTCTTT	C	0	PASS	DP=34;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,5:1,1:7,4
+chr11	32421397	.	G	T	0	PASS	DP=64;GPV=1;SPV=9.8512e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:11,6:7,8
+chr11	32522513	.	T	TCTTA	0	PASS	DP=22;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,4:0,0:5,4
+chr11	32581434	.	C	CGT	0	PASS	DP=36;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:4,9:2,6:2,3
+chr11	33186819	.	AT	A	0	PASS	DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,3:4,1
+chr11	34520272	.	GT	G	0	PASS	DP=45;GPV=1;SPV=0.037022;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:8,5:10,3
+chr11	34520276	.	T	G	0	PASS	DP=44;GPV=1;SPV=0.031869;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:5,5:12,3
+chr11	34926224	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.00048775;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:6,4:11,4
+chr11	36209353	.	CTT	C	0	PASS	DP=26;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:4,3:2,1
+chr11	36797793	.	A	AT	0	PASS	DP=30;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:2,4:6,1
+chr11	37022094	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:16,1:14,4
+chr11	37035328	.	C	CTT	0	PASS	DP=29;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:0,7:0,6:0,1
+chr11	37347904	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,3:6,1
+chr11	37347998	.	ATG	A	0	PASS	DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,2:7,2
+chr11	37744880	.	A	G	0	PASS	DP=160;GPV=1;SPV=0.034292;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:66,13:36,7:30,6
+chr11	37941477	.	T	C	0	PASS	DP=48;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:2,4:2,3:0,1
+chr11	39296506	.	A	AT	0	PASS	DP=56;GPV=1;SPV=2.1371e-05;SS=2;SSC=46;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,18:13,11:4,7
+chr11	39574955	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:2,3:3,1
+chr11	40476116	.	T	A	0	PASS	DP=54;GPV=1;SPV=0.000837;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:10,4:9,6
+chr11	40978118	.	A	T	0	PASS	DP=68;GPV=1;SPV=6.3944e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:8,8:6,5
+chr11	41523661	.	CATTG	C	0	PASS	DP=46;GPV=1;SPV=0.0068131;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:5,5:11,6
+chr11	41561930	.	T	TAA	0	PASS	DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:2,4:5,1
+chr11	43157285	.	C	T	0	PASS	DP=56;GPV=1;SPV=5.4482e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:8,6:8,6
+chr11	43831167	.	T	C	0	PASS	DP=68;GPV=1;SPV=1.3876e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:7,7:12,11
+chr11	44509830	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:2,1:4,1
+chr11	45105884	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.00061695;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:8,2:21,10
+chr11	45813586	.	G	GTT	0	PASS	DP=40;GPV=1;SPV=0.030583;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:7,6:4,1
+chr11	46630568	.	C	CTTTT	0	PASS	DP=23;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:5,4:2,1
+chr11	46765599	.	CTT	C	0	PASS	DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,5:2,1
+chr11	47824052	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.12384;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:7,3:4,2:3,1
+chr11	49885748	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.038682;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:13,2:7,7
+chr11	50171655	.	C	G	0	PASS	DP=63;GPV=1;SPV=8.4617e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:7,9:13,3
+chr11	51252751	.	T	G	0	PASS	DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:3,1:27,3
+chr11	51253776	.	G	T	0	PASS	DP=119;GPV=1;SPV=0.036743;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:49,6:36,3:13,3
+chr11	51598715	.	T	C	0	PASS	DP=214;GPV=1;SPV=0.020114;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:84,14:33,6:51,8
+chr11	51920154	.	C	G	0	PASS	DP=62;GPV=1;SPV=0.040748;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:19,6:7,1
+chr11	52497199	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:20,4:2,0
+chr11	53000384	.	A	T	0	PASS	DP=55;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:16,5:11,1
+chr11	53000388	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.063676;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:20,1:7,4
+chr11	53300757	.	C	G	0	PASS	DP=98;GPV=1;SPV=0.024789;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:17,1:20,7
+chr11	53594324	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.013782;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:15,4:6,4
+chr11	53598678	.	G	T	0	PASS	DP=102;GPV=1;SPV=0.0015682;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:39,18:19,8:20,10
+chr11	54400380	.	A	G	0	PASS	DP=105;GPV=1;SPV=0.01321;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:51,7:21,5:30,2
+chr11	54400735	.	T	G	0	PASS	DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr11	54400754	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr11	54401959	.	TG	T	0	PASS	DP=91;GPV=1;SPV=0.030542;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:46,6:34,4:12,2
+chr11	54418755	.	A	G	0	PASS	DP=465;GPV=1;SPV=0.049731;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:215:190,25:89,15:101,10
+chr11	54528315	.	T	C	0	PASS	DP=70;GPV=1;SPV=0.089706;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:11,3:24,1
+chr11	55549822	.	A	G	0	PASS	DP=60;GPV=1;SPV=6.2662e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:7,5:10,6
+chr11	55978381	.	TAAAAAAAAAAAAAAAAA	T	0	PASS	DP=25;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,6:3,3:5,3
+chr11	57121117	.	G	GT	0	PASS	DP=55;GPV=1;SPV=0.0036768;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,5:9,4:5,1
+chr11	58010671	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.033264;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,1:5,5
+chr11	58427783	.	G	C	0	PASS	DP=70;GPV=1;SPV=0.00018235;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:14,7:13,7
+chr11	58436136	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,5:3,4:3,1
+chr11	59106681	.	G	GCCGCCAGCGCGCGGCTC	0	PASS	DP=22;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,3:4,3
+chr11	60865847	.	TTTTC	T	0	PASS	DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:3,2:3,6
+chr11	62279222	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,1:7,3
+chr11	63191686	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.0025127;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:21,19:12,7:9,12
+chr11	63483785	.	ATATATATATATATATGTATATAT	A	0	PASS	DP=25;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,7:2,4:3,3
+chr11	63526790	.	A	G	0	PASS	DP=68;GPV=1;SPV=1.1878e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:5,8:13,4
+chr11	63734734	.	A	AACACAC	0	PASS	DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:3,1:6,6
+chr11	64271296	.	T	A	0	PASS	DP=22;GPV=1;SPV=0.0075758;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,6:0,4:0,2
+chr11	65513703	.	A	G	0	PASS	DP=46;GPV=1;SPV=3.2742e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,11:2,4:3,7
+chr11	65762828	.	C	A	0	PASS	DP=52;GPV=1;SPV=0.019226;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:10,4:7,5
+chr11	67923129	.	G	T	0	PASS	DP=79;GPV=1;SPV=0.019344;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:17,7:16,1
+chr11	68490423	.	G	A	0	PASS	DP=51;GPV=1;SPV=9.3592e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:7,6:7,5
+chr11	68861507	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.012958;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:16,3:8,4
+chr11	71673775	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.010572;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:1,3:5,3
+chr11	71755076	.	A	T	0	PASS	DP=64;GPV=1;SPV=0.018691;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:13,4:12,1
+chr11	72049585	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,1:3,3
+chr11	73943269	.	GT	G	0	PASS	DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:4,3:1,2
+chr11	74987890	.	TTTTTTTTC	T	0	PASS	DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,8:1,4:2,4
+chr11	77171385	.	C	T	0	PASS	DP=77;GPV=1;SPV=1.8905e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:8,5:11,8
+chr11	79616351	.	T	C	0	PASS	DP=54;GPV=1;SPV=8.9618e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:7,8:7,7
+chr11	82112555	.	C	CTG	0	PASS	DP=49;GPV=1;SPV=0.030499;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,6:7,3:4,3
+chr11	82588774	.	A	C	0	PASS	DP=38;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:9,3:4,1
+chr11	82651015	.	TAGAGAATCCAAACTGCAACACATCTCAGGCAGCAAATGAGA	T	0	PASS	DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:8,2:8,2
+chr11	83511087	.	G	GACACACACACACACAC	0	PASS	DP=25;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:6,2:2,2
+chr11	84106954	.	AAGAG	A	0	PASS	DP=34;GPV=1;SPV=0.078947;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,2:2,1:2,1
+chr11	85787701	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:4,4:8,4
+chr11	88174640	.	AAC	A	0	PASS	DP=49;GPV=1;SPV=0.025437;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:8,5:8,1
+chr11	88657202	.	T	C	0	PASS	DP=57;GPV=1;SPV=3.5161e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:7,9:7,6
+chr11	89316563	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.028792;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:11,1:2,5
+chr11	89515369	.	T	G	0	PASS	DP=46;GPV=1;SPV=7.554e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:5,7:4,5
+chr11	89667996	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.003388;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,7:13,6:15,1
+chr11	89716988	.	C	CTA	0	PASS	DP=54;GPV=1;SPV=0.0035849;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,14:6,11:10,3
+chr11	89899896	.	T	A	0	PASS	DP=104;GPV=1;SPV=3.8932e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:38,13:20,11:18,2
+chr11	90186730	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.00058349;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,12:4,3:4,9
+chr11	90568520	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.037185;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:9,6:5,3:4,3
+chr11	90616126	.	TGGTTGGCA	T	0	PASS	DP=36;GPV=1;SPV=0.025519;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:5,4:3,2
+chr11	90616137	.	A	ACCCT	0	PASS	DP=35;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,4:3,2
+chr11	91336805	.	CATATATATAT	C	0	PASS	DP=26;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:5,2:1,3
+chr11	92223783	.	CCTCTCT	C	0	PASS	DP=46;GPV=1;SPV=0.043019;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,2:6,2
+chr11	93490106	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.0068571;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:9,3:10,3
+chr11	94237566	.	G	A	0	PASS	DP=516;GPV=1;SPV=0.032943;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:255:216,39:107,23:109,16
+chr11	94330670	.	TC	T	0	PASS	DP=43;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:12,2:6,4
+chr11	94330675	.	A	T	0	PASS	DP=41;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,6:10,3:3,3
+chr11	94612316	.	T	G	0	PASS	DP=52;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:2,2:1,1:1,1
+chr11	94753306	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,2:4,2
+chr11	96558489	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.00014072;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:15,6:8,7
+chr11	96585172	.	A	AT	0	PASS	DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,3:2,1
+chr11	97596417	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.00039828;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:13,3:6,6
+chr11	98107766	.	G	C	0	PASS	DP=58;GPV=1;SPV=2.1926e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:6,6:7,4
+chr11	98248416	.	GTT	G	0	PASS	DP=36;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:5,9:2,7:3,2
+chr11	98761483	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,9:1,5:3,4
+chr11	99185885	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.0011156;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:8,5:5,4
+chr11	101263877	.	GTATATA	G	0	PASS	DP=53;GPV=1;SPV=0.10966;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:17,2:9,2
+chr11	101263885	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:17,2:8,2
+chr11	101263887	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:16,2:8,2
+chr11	101283303	.	A	ATTAAC	0	PASS	DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:10,4:14,4
+chr11	101283304	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.00054466;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:9,5:13,4
+chr11	101283308	.	T	TTG	0	PASS	DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:10,4:14,4
+chr11	101374333	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.028437;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:12,3:10,6
+chr11	101600388	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.0036217;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:9,4:15,5
+chr11	101865140	.	A	AACAC	0	PASS	DP=44;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,7:5,4:1,3
+chr11	103188222	.	A	G	0	PASS	DP=59;GPV=1;SPV=1.9366e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:11,15:8,4:3,11
+chr11	103842758	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,7:10,6:10,1
+chr11	104811359	.	T	C	0	PASS	DP=44;GPV=1;SPV=0.027005;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,8:7,7:8,1
+chr11	105161948	.	GA	G	0	PASS	DP=26;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:7,1:1,3
+chr11	105491173	.	TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	T	0	PASS	DP=17;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,4:1,2:2,2
+chr11	105516595	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,2:4,1:2,1
+chr11	105965792	.	C	A	0	PASS	DP=61;GPV=1;SPV=0.00049183;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:2,6:19,4
+chr11	107837525	.	T	TAAAA	0	PASS	DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:7,7:6,1
+chr11	111005139	.	A	ATGTG	0	PASS	DP=23;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,4:3,4:0,0
+chr11	111696514	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.00013202;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:13,5:4,4
+chr11	112273035	.	TTTCCTTC	T	0	PASS	DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:6,2:8,3
+chr11	112645955	.	CAA	C	0	PASS	DP=35;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,5:6,4:2,1
+chr11	113195495	.	ATT	A	0	PASS	DP=25;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,4:4,1:3,3
+chr11	113507905	.	GCTCT	G	0	PASS	DP=28;GPV=1;SPV=0.00074848;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,9:3,8:0,1
+chr11	113973294	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,10:3,5:3,5
+chr11	114557652	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.39286;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,3:5,1:4,2
+chr11	115080381	.	ACAC	A	0	PASS	DP=47;GPV=1;SPV=0.16035;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:23,3:14,2:9,1
+chr11	116969289	.	CA	C	0	PASS	DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,8:1,7:2,1
+chr11	117264897	.	C	G	0	PASS	DP=57;GPV=1;SPV=4.0511e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:15,17:5,6:10,11
+chr11	119657739	.	A	AAATAATAAT	0	PASS	DP=27;GPV=1;SPV=0.12384;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,3:4,1:3,2
+chr11	120328678	.	A	AGTGTGT	0	PASS	DP=29;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,3:1,2:3,1
+chr11	122859629	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.00034731;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:14,4:3,5
+chr11	124433397	.	ATG	A	0	PASS	DP=38;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,7:4,5:3,2
+chr11	125189421	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,3:3,2:1,1
+chr11	125866611	.	T	G	0	PASS	DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,2:2,3
+chr11	126707783	.	A	T	0	PASS	DP=45;GPV=1;SPV=2.8326e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:9,19:3,10:6,9
+chr11	129693712	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:1,3:1,3:0,0
+chr11	130641107	.	CTTTTTT	C	0	PASS	DP=22;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:4,5:1,3
+chr11	131680604	.	C	T	0	PASS	DP=113;GPV=1;SPV=0.014972;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,5:15,4:20,1
+chr11	131733467	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.17314;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:9,2:19,3
+chr11	132521000	.	C	A	0	PASS	DP=58;GPV=1;SPV=0.0093079;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:12,1:10,5
+chr12	707613	.	TTC	T	0	PASS	DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,3:9,1
+chr12	1440600	.	TTGTGTG	T	0	PASS	DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,2:4,2
+chr12	1516164	.	C	CTT	0	PASS	DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:5,3:4,1
+chr12	2545212	.	A	AT	0	PASS	DP=29;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,8:3,5:0,3
+chr12	2883075	.	A	AAAAAAAAACAAC	0	PASS	DP=28;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,7:3,2:3,5
+chr12	3666358	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.091388;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,6:7,5:8,1
+chr12	6156091	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:8,4:0,2
+chr12	6591707	.	A	T	0	PASS	DP=69;GPV=1;SPV=2.5948e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:4,3:10,11
+chr12	6617994	.	G	GACACACACAC	0	PASS	DP=46;GPV=1;SPV=0.027154;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,5:8,1:8,4
+chr12	7483843	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,1:6,3
+chr12	7682835	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:0,5:0,4:0,1
+chr12	7883267	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,6:4,1:2,5
+chr12	9301106	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.048396;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:23,7:14,1
+chr12	9428531	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.028561;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:14,1:12,4
+chr12	9431081	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:2,3:9,4
+chr12	9442266	.	T	A	0	PASS	DP=38;GPV=1;SPV=0.16084;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,4:13,1
+chr12	9444361	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.017231;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:11,4:5,3
+chr12	9463271	.	A	T	0	PASS	DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr12	11302137	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,5:2,1
+chr12	11302264	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,2:7,2
+chr12	14280488	.	C	CAA	0	PASS	DP=32;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,6:2,5:4,1
+chr12	14481935	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.037091;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:9,3:12,1
+chr12	14481936	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.04;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:9,3:12,1
+chr12	14949106	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.0051219;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,13:7,9:5,4
+chr12	15681305	.	G	GTAA	0	PASS	DP=40;GPV=1;SPV=0.0079383;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:4,5:5,3
+chr12	15901861	.	A	C	0	PASS	DP=32;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:1,2:0,1:1,1
+chr12	17997427	.	C	T	0	PASS	DP=61;GPV=1;SPV=9.1903e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:13,20:7,4:6,16
+chr12	18517031	.	C	CT	0	PASS	DP=51;GPV=1;SPV=0.02677;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:8,4:8,4
+chr12	19084009	.	C	T	0	PASS	DP=49;GPV=1;SPV=1.1033e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,15:5,9:7,6
+chr12	21396055	.	T	G	0	PASS	DP=55;GPV=1;SPV=3.1465e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,15:6,8:7,7
+chr12	21926363	.	G	T	0	PASS	DP=64;GPV=1;SPV=8.6637e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:12,2:6,8
+chr12	21982167	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.06037;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:8,2:20,2
+chr12	22432849	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.010774;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:6,4:12,4
+chr12	22432855	.	T	G	0	PASS	DP=44;GPV=1;SPV=0.047817;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,8:6,5:10,3
+chr12	24075277	.	T	TA	0	PASS	DP=22;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,2:2,2
+chr12	25224183	.	TA	T	0	PASS	DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:7,5:3,3
+chr12	25225290	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:1,4:1,3:0,1
+chr12	25271961	.	A	ATGTGTGTG	0	PASS	DP=37;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:5,11:4,8:1,3
+chr12	26232934	.	T	TA	0	PASS	DP=26;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,9:3,7:0,2
+chr12	26568011	.	T	TATATA	0	PASS	DP=25;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,2:2,1:0,1
+chr12	26591083	.	A	C	0	PASS	DP=17;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,2:1,1:4,1
+chr12	28605811	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.00028966;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:4,4:7,4
+chr12	28932263	.	AAG	A	0	PASS	DP=42;GPV=1;SPV=0.0058287;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:4,3:7,2
+chr12	28980001	.	A	T	0	PASS	DP=45;GPV=1;SPV=5.6087e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:19:1,10:0,6:1,4
+chr12	29081657	.	GGTGTGT	G	0	PASS	DP=26;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,9:1,5:5,4
+chr12	30658876	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:6,4:2,2
+chr12	30790062	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.028751;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,9:12,6:6,3
+chr12	31070300	.	A	ATTTTTTTTTTT	0	PASS	DP=42;GPV=1;SPV=0.013669;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:1,2:13,3
+chr12	31183168	.	A	AAATG	0	PASS	DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:6,4:6,2
+chr12	31741127	.	G	T	0	PASS	DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:3,7:4,4
+chr12	31890534	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:14,3:11,1
+chr12	32005286	.	A	ATATG	0	PASS	DP=31;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:3,5:8,2
+chr12	32659204	.	A	G	0	PASS	DP=76;GPV=1;SPV=5.8035e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,16:16,6:8,10
+chr12	33360524	.	GT	G	0	PASS	DP=45;GPV=1;SPV=0.0041497;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:8,4:8,4
+chr12	33412362	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.0026972;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:10,7:8,7
+chr12	33836693	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.0018489;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:6,1:8,6
+chr12	34334877	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.019962;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:8,1:16,4
+chr12	34778762	.	G	T	0	PASS	DP=50;GPV=1;SPV=0.022623;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:3,1:13,5
+chr12	34897599	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.024618;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:38,10:0,1
+chr12	34899863	.	T	G	0	PASS	DP=70;GPV=1;SPV=0.029889;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:0,0:26,4
+chr12	34945692	.	G	C	0	PASS	DP=101;GPV=1;SPV=0.026239;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:8,4:26,6
+chr12	35078228	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.02537;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:20,7:6,2
+chr12	35186013	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:1,2:8,4
+chr12	35346780	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:26,4:0,0
+chr12	35780582	.	T	A	0	PASS	DP=143;GPV=1;SPV=0.029253;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:63,9:35,8:28,1
+chr12	35780597	.	A	T	0	PASS	DP=135;GPV=1;SPV=0.0032527;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:45,19:26,11:19,8
+chr12	36311802	.	C	A	0	PASS	DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,3:13,2
+chr12	36311803	.	C	A	0	PASS	DP=49;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:8,3:15,2
+chr12	36464687	.	T	A	0	PASS	DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr12	36721677	.	G	C	0	PASS	DP=61;GPV=1;SPV=0.068908;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:26,4:2,0
+chr12	36885604	.	G	C	0	PASS	DP=41;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:16,4:0,0
+chr12	36941010	.	G	C	0	PASS	DP=81;GPV=1;SPV=0.017934;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:25,8:7,2
+chr12	36941239	.	A	G	0	PASS	DP=118;GPV=1;SPV=0.015193;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:54,6:27,4:27,2
+chr12	36991443	.	G	T	0	PASS	DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:10,3:2,1
+chr12	37247184	.	T	G	0	PASS	DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:5,4:3,6
+chr12	37263826	.	C	A	0	PASS	DP=37;GPV=1;SPV=5.5832e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:3,5:4,5
+chr12	37263827	.	T	A	0	PASS	DP=37;GPV=1;SPV=2.299e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:3,5:3,5
+chr12	37441936	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.016312;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:11,8:18,3
+chr12	38561510	.	A	AT	0	PASS	DP=30;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:2,8:0,3:2,5
+chr12	38894658	.	ACTCTCTCTCTCTCT	A	0	PASS	DP=29;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,7:2,5:3,2
+chr12	39325498	.	A	ATTTTTT	0	PASS	DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,2:6,4
+chr12	39925030	.	A	ATTT	0	PASS	DP=28;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,6:0,5:3,1
+chr12	40630542	.	TTTCTTTC	T	0	PASS	DP=41;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,6:7,5:4,1
+chr12	40706002	.	C	A	0	PASS	DP=62;GPV=1;SPV=0.026404;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:11,4:18,2
+chr12	41571376	.	TCACA	T	0	PASS	DP=26;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,6:5,1:1,5
+chr12	43615239	.	G	GTTT	0	PASS	DP=33;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:2,8:1,5:1,3
+chr12	43741568	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.0054545;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:8,2:11,4
+chr12	43958795	.	C	CT	0	PASS	DP=48;GPV=1;SPV=0.029609;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:9,4:8,6
+chr12	44311797	.	G	GTA	0	PASS	DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:13,2:5,2
+chr12	45435714	.	A	G	0	PASS	DP=65;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:1,2:1,1:0,1
+chr12	47354714	.	T	TATAG	0	PASS	DP=32;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,10:1,4:2,6
+chr12	48912437	.	C	CAAAAA	0	PASS	DP=33;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,6:8,5:7,1
+chr12	49036478	.	AT	A	0	PASS	DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,2:4,2
+chr12	49787094	.	A	AT	0	PASS	DP=35;GPV=1;SPV=0.019118;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:4,3:6,1
+chr12	51424037	.	C	CA	0	PASS	DP=20;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,5:2,4:0,1
+chr12	53162338	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.024686;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:6,7:13,8
+chr12	55067453	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.015459;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:5,6:9,2
+chr12	55898651	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.030651;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:3,3:8,2
+chr12	58054993	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.01458;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:9,5:3,4
+chr12	58378552	.	CA	C	0	PASS	DP=48;GPV=1;SPV=0.00057702;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:7,6:9,5
+chr12	58696750	.	C	T	0	PASS	DP=69;GPV=1;SPV=2.3275e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:21,20:11,10:10,10
+chr12	58856895	.	G	T	0	PASS	DP=72;GPV=1;SPV=1.173e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,17:9,8:11,9
+chr12	59883789	.	A	G	0	PASS	DP=56;GPV=1;SPV=1.3208e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:6,10:5,3
+chr12	60869682	.	TTTCCTTCCTTCCTTCCTTCCTTCC	T	0	PASS	DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:7,1:11,4
+chr12	60869725	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,1:4,5
+chr12	63674050	.	G	A	0	PASS	DP=55;GPV=1;SPV=6.9341e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:9,6:7,6
+chr12	64040804	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.0020355;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:11,4:9,3
+chr12	64366214	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:9,3:10,1
+chr12	64676467	.	CTTT	C	0	PASS	DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:1,3:6,1
+chr12	65738517	.	T	TTCTCTC	0	PASS	DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:11,4:4,1
+chr12	66497260	.	A	T	0	PASS	DP=46;GPV=1;SPV=0.00053433;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:5,3:4,3
+chr12	67380425	.	C	A	0	PASS	DP=33;GPV=1;SPV=0.018404;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:6,2:5,3
+chr12	67380512	.	TA	T	0	PASS	DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:9,6:3,4
+chr12	67678215	.	A	AAAAAAAAAAAAGTTCTC	0	PASS	DP=50;GPV=1;SPV=0.0058074;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:10,3:4,7
+chr12	68632146	.	G	T	0	PASS	DP=27;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,2:4,1:1,1
+chr12	69995387	.	GTT	G	0	PASS	DP=21;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:3,4:1,1
+chr12	70564842	.	TA	T	0	PASS	DP=46;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,7:4,6:7,1
+chr12	71216197	.	C	CACACACAG	0	PASS	DP=49;GPV=1;SPV=0.00017491;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,10:10,8:3,2
+chr12	76723001	.	GTATATA	G	0	PASS	DP=19;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:0,2:2,2
+chr12	77043362	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.00026518;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:6,6:9,5
+chr12	79179028	.	A	C	0	PASS	DP=25;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,2:2,1:5,1
+chr12	81007094	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:18,3:5,2
+chr12	81007095	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:17,2:4,3
+chr12	81954178	.	G	A	0	PASS	DP=57;GPV=1;SPV=1.062e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,14:2,5:7,9
+chr12	83586957	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.048357;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:12,7:10,1
+chr12	83837218	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.013982;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:7,4:16,1
+chr12	85354446	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.00027927;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:13,5:4,3
+chr12	92151443	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.00518;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:10,7:4,4
+chr12	93365275	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.0098985;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,4:4,2
+chr12	93463255	.	C	CTT	0	PASS	DP=24;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,9:1,8:5,1
+chr12	93492513	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.00020271;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,16:10,8:12,8
+chr12	94040342	.	G	T	0	PASS	DP=37;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,5:2,1:4,4
+chr12	94986642	.	AC	A	0	PASS	DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:8,4:6,4
+chr12	95101681	.	C	CT	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:8,2:2,2
+chr12	95654770	.	T	A	0	PASS	DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:2,3:6,1
+chr12	96453881	.	GATATATATATATATATATATAT	G	0	PASS	DP=26;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:2,7:1,6:1,1
+chr12	97335973	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.017028;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,6:2,3:4,3
+chr12	97598862	.	G	A	0	PASS	DP=65;GPV=1;SPV=2.244e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,16:8,10:6,6
+chr12	98257900	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.017995;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:12,4:11,1
+chr12	99761065	.	C	CAA	0	PASS	DP=31;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:9,4:3,4
+chr12	99864079	.	C	CA	0	PASS	DP=22;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:4,3:0,1
+chr12	100364047	.	C	CAA	0	PASS	DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:8,5:2,1
+chr12	101948762	.	T	TACACACAC	0	PASS	DP=33;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,6:7,3:1,3
+chr12	102476410	.	T	TGAGAGAGAGAGA	0	PASS	DP=35;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:7,6:2,2
+chr12	103085541	.	AT	A	0	PASS	DP=63;GPV=1;SPV=2.2309e-07;SS=2;SSC=66;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:13,17:8,8:5,9
+chr12	103166076	.	A	AGAAGGAAG	0	PASS	DP=49;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:13,3:3,5
+chr12	103619755	.	CG	C	0	PASS	DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:7,2:7,4
+chr12	103974988	.	AAAAAAG	A	0	PASS	DP=43;GPV=1;SPV=0.017042;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:8,7:8,3
+chr12	104001705	.	A	AT	0	PASS	DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,1:11,3
+chr12	104267707	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr12	104454404	.	AAC	A	0	PASS	DP=58;GPV=1;SPV=0.055981;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,1:14,3
+chr12	104454411	.	C	A	0	PASS	DP=58;GPV=1;SPV=0.055981;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,2:14,2
+chr12	105100364	.	CTCTTT	C	0	PASS	DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:4,1:12,5
+chr12	106054475	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.00086916;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:3,4:11,3
+chr12	107205546	.	C	CTT	0	PASS	DP=26;GPV=1;SPV=0.0076174;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,9:0,7:1,2
+chr12	107944897	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.016363;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:11,1:13,5
+chr12	108096721	.	C	T	0	PASS	DP=68;GPV=1;SPV=8.1433e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:15,18:11,8:4,10
+chr12	109572411	.	A	AT	0	PASS	DP=34;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,5:6,1
+chr12	113488953	.	CCTTTCTTTCTTTCTTT	C	0	PASS	DP=40;GPV=1;SPV=0.020128;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:0,2:10,5
+chr12	113785755	.	C	A	0	PASS	DP=67;GPV=1;SPV=0.00017884;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:13,5:8,5
+chr12	115281918	.	T	A	0	PASS	DP=56;GPV=1;SPV=0.034112;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:15,5:12,1
+chr12	115394477	.	A	AATGG	0	PASS	DP=44;GPV=1;SPV=0.070897;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,5:7,3:13,2
+chr12	116566616	.	T	TAAA	0	PASS	DP=29;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:5,4:8,2
+chr12	117041342	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.0079418;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:12,2:8,4
+chr12	117629414	.	T	A	0	PASS	DP=63;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:9,5:8,6
+chr12	118888779	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.032688;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:11,2:11,5
+chr12	119317335	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,6:6,5:9,1
+chr12	121966423	.	G	T	0	PASS	DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:3,2:2,3
+chr12	122016764	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.0011083;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:14,5:7,3
+chr12	122427208	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.021584;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:8,3:2,1
+chr12	122427209	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,4:6,3:1,1
+chr12	123756307	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:9,9:2,1
+chr12	125617344	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:10,3:3,2
+chr12	125656013	.	G	GA	0	PASS	DP=50;GPV=1;SPV=0.029893;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:13,4:10,2
+chr12	127444530	.	A	AAT	0	PASS	DP=44;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:10,2:8,3
+chr12	127736409	.	CT	C	0	PASS	DP=28;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,3:5,3
+chr12	128090909	.	G	C	0	PASS	DP=47;GPV=1;SPV=0.016493;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:8,3:11,3
+chr12	128295003	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.011145;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:9,2:10,4
+chr12	128988629	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.010101;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:1,4:1,1:0,3
+chr12	129187809	.	C	T	0	PASS	DP=80;GPV=1;SPV=6.9059e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,19:12,12:12,7
+chr12	129521915	.	AT	A	0	PASS	DP=56;GPV=1;SPV=0.0030216;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:11,4:10,4
+chr12	129525226	.	GT	G	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,1:5,3
+chr12	129877174	.	T	A	0	PASS	DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:8,1:12,4
+chr12	130050276	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:3,1:11,6
+chr12	130441414	.	A	C	0	PASS	DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,3:7,1
+chr12	131150300	.	AT	A	0	PASS	DP=41;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:8,1:14,5
+chr12	131419456	.	C	G	0	PASS	DP=67;GPV=1;SPV=9.2359e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:12,18:2,10:10,8
+chr12	132381475	.	A	G	0	PASS	DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,4:3,1
+chr12	132391135	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.0010975;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:15,3:6,4
+chr12	132919379	.	CT	C	0	PASS	DP=28;GPV=1;SPV=0.018803;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:2,1:5,3
+chr13	18172309	.	TAGAATGAA	T	0	PASS	DP=222;GPV=1;SPV=0.029173;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:102,13:48,4:54,9
+chr13	18172325	.	T	A	0	PASS	DP=223;GPV=1;SPV=0.011983;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:93,13:39,4:54,9
+chr13	18172326	.	A	T	0	PASS	DP=225;GPV=1;SPV=0.024745;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:97,12:43,3:54,9
+chr13	18172327	.	T	A	0	PASS	DP=217;GPV=1;SPV=0.022597;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:89,13:42,4:47,9
+chr13	18172333	.	T	TTTTCATTC	0	PASS	DP=223;GPV=1;SPV=0.041149;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:93,12:37,3:56,9
+chr13	18197090	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:11,3:7,1
+chr13	18206038	.	CAA	C	0	PASS	DP=71;GPV=1;SPV=0.032687;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,8:13,7:7,1
+chr13	18271449	.	G	C	0	PASS	DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:4,5:2,1
+chr13	18531171	.	AGCAAACACCCCACAGCATGG	A	0	PASS	DP=74;GPV=1;SPV=0.029793;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:13,4:9,5
+chr13	18545200	.	A	G	0	PASS	DP=76;GPV=1;SPV=0.019855;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:10,8:16,2
+chr13	18808933	.	G	T	0	PASS	DP=79;GPV=1;SPV=0.043261;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:15,4:13,1
+chr13	19048992	.	G	A	0	PASS	DP=80;GPV=1;SPV=2.8359e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:8,10:13,7
+chr13	19290200	.	A	AT	0	PASS	DP=57;GPV=1;SPV=0.0029061;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,11:14,4:6,7
+chr13	20148253	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,5:2,4:2,1
+chr13	21050147	.	G	GATAGATAGATAGATACATACATAC	0	PASS	DP=48;GPV=1;SPV=0.031261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,6:7,3:8,3
+chr13	21853573	.	T	A	0	PASS	DP=44;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:2,3:1,2:1,1
+chr13	22478011	.	G	T	0	PASS	DP=53;GPV=1;SPV=0.00027241;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:7,5:9,5
+chr13	22512021	.	C	CAA	0	PASS	DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:6,5:5,1
+chr13	22713588	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.0317;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:13,2:13,2
+chr13	24697639	.	CAA	C	0	PASS	DP=27;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,5:3,3:4,2
+chr13	25160257	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:4,8:6,1
+chr13	25717440	.	C	A	0	PASS	DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,8:2,6:4,2
+chr13	25751273	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.0003248;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,13:9,6:9,7
+chr13	26485192	.	AG	A	0	PASS	DP=33;GPV=1;SPV=0.0084353;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,3:2,3
+chr13	26907752	.	A	T	0	PASS	DP=71;GPV=1;SPV=0.006277;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:19,3:10,4
+chr13	28034119	.	A	ATCATAT	0	PASS	DP=48;GPV=1;SPV=0.0033296;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:9,5:7,2
+chr13	28034406	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.0016051;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:9,2:11,5
+chr13	28037847	.	CG	C	0	PASS	DP=60;GPV=1;SPV=0.00086768;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:10,5:9,3
+chr13	28085343	.	CAAAAA	C	0	PASS	DP=35;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,8:4,7:2,1
+chr13	28745358	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.00077001;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,6:6,2
+chr13	28931190	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.031154;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:14,1:18,4
+chr13	30523150	.	C	A	0	PASS	DP=67;GPV=1;SPV=1.3691e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:11,6:8,7
+chr13	31817645	.	A	G	0	PASS	DP=52;GPV=1;SPV=1.3103e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:6,5:6,7
+chr13	32541676	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:3,5:4,2
+chr13	32637218	.	A	AATAAGGGT	0	PASS	DP=23;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,5:0,2:0,3
+chr13	33181267	.	T	TACACAC	0	PASS	DP=33;GPV=1;SPV=0.021709;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:2,11:2,6:0,5
+chr13	33209457	.	C	CTTTTT	0	PASS	DP=45;GPV=1;SPV=0.0005812;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:7,9:7,2
+chr13	34971819	.	C	CT	0	PASS	DP=44;GPV=1;SPV=0.00071076;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:4,6:8,2
+chr13	35813730	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.013043;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:5,5:3,1
+chr13	35967635	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.0013435;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:8,3:11,5
+chr13	37153528	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.026299;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:5,1:12,5
+chr13	37153529	.	C	G	0	PASS	DP=36;GPV=1;SPV=0.027859;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:3,1:12,5
+chr13	37301190	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:5,3:1,1
+chr13	37309075	.	CT	C	0	PASS	DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:8,3:4,1
+chr13	37753581	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.012033;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:3,4:5,2
+chr13	37989356	.	T	TAGATAGATAGATAGATAGATAGAC	0	PASS	DP=46;GPV=1;SPV=0.004158;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,8:6,2:8,6
+chr13	41076269	.	AT	A	0	PASS	DP=38;GPV=1;SPV=0.18479;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,5:10,3:7,2
+chr13	42206975	.	T	TTTTCTTTC	0	PASS	DP=45;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,3:14,2
+chr13	42881605	.	C	CTGTG	0	PASS	DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,2:6,5
+chr13	43690259	.	A	T	0	PASS	DP=41;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:1,2:0,0:1,2
+chr13	45211673	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.024817;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:12,2:10,5
+chr13	46788054	.	G	GT	0	PASS	DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:9,2:15,3
+chr13	48847500	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.0082418;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,4:0,3:2,1
+chr13	52256869	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.00019163;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:14,8:2,4
+chr13	52519790	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.046691;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:19,3:12,2
+chr13	53000431	.	C	CT	0	PASS	DP=50;GPV=1;SPV=0.056049;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:14,4:10,1
+chr13	53177159	.	CA	C	0	PASS	DP=65;GPV=1;SPV=8.5151e-06;SS=2;SSC=50;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,17:11,12:9,5
+chr13	53232170	.	ATCTC	A	0	PASS	DP=46;GPV=1;SPV=0.014585;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:4,3:9,1
+chr13	54011938	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.0004157;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:9,5:7,5
+chr13	55704368	.	GTA	G	0	PASS	DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:3,4:5,2
+chr13	55704462	.	A	C	0	PASS	DP=26;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,5:2,2:3,3
+chr13	56885075	.	TTATATA	T	0	PASS	DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,2:1,2
+chr13	57140339	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.021978;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:29,13:11,2
+chr13	57218442	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.0029833;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:8,5:18,4
+chr13	57395150	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,4:1,3:5,1
+chr13	57612097	.	T	G	0	PASS	DP=49;GPV=1;SPV=0.12484;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:11,1:11,2
+chr13	57693315	.	C	CAT	0	PASS	DP=30;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:5,5:4,2
+chr13	57983872	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:6,4:11,4
+chr13	58418567	.	T	TA	0	PASS	DP=55;GPV=1;SPV=0.00010896;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:9,6:7,5
+chr13	58624833	.	CAA	C	0	PASS	DP=19;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:1,3:3,1
+chr13	60084015	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.04724;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,4:3,3:4,1
+chr13	60941018	.	G	T	0	PASS	DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:18,2:12,2
+chr13	62814203	.	A	AGT	0	PASS	DP=42;GPV=1;SPV=0.010053;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,4:5,5
+chr13	64231639	.	T	A	0	PASS	DP=27;GPV=1;SPV=2.7919e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:3,13:1,10:2,3
+chr13	68338318	.	C	A	0	PASS	DP=61;GPV=1;SPV=0.0004629;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:14,6:8,5
+chr13	68610689	.	C	G	0	PASS	DP=52;GPV=1;SPV=0.002076;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:10,4:8,4
+chr13	69149741	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,9:7,8:2,1
+chr13	69157963	.	C	T	0	PASS	DP=51;GPV=1;SPV=3.1e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:12,18:8,4:4,14
+chr13	69412498	.	ATTT	A	0	PASS	DP=20;GPV=1;SPV=0.0022624;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,6:1,1:1,5
+chr13	69863387	.	C	CAAAAGAGGATCCTAGAAGAAGACTAGGCACCAGT	0	PASS	DP=37;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,4:10,3:8,1
+chr13	70218558	.	AT	A	0	PASS	DP=55;GPV=1;SPV=2.4722e-08;SS=2;SSC=76;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:8,16:4,9:4,7
+chr13	71783965	.	A	T	0	PASS	DP=41;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:28:1,3:1,2:0,1
+chr13	72153116	.	A	G	0	PASS	DP=57;GPV=1;SPV=1.172e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,16:9,12:4,4
+chr13	72358634	.	C	A	0	PASS	DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:5,2:4,7
+chr13	72990213	.	CA	C	0	PASS	DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,3:5,1
+chr13	73108638	.	A	ATC	0	PASS	DP=63;GPV=1;SPV=0.068908;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,4:12,2:16,2
+chr13	73915307	.	T	G	0	PASS	DP=52;GPV=1;SPV=4.5491e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:13,19:8,11:5,8
+chr13	74436978	.	AT	A	0	PASS	DP=51;GPV=1;SPV=0.383;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,4:10,3:6,1
+chr13	75687821	.	A	C	0	PASS	DP=47;GPV=1;SPV=0.0013031;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,15:5,10:7,5
+chr13	76942709	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.00017947;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:7,7:10,4
+chr13	77704093	.	A	C	0	PASS	DP=114;GPV=1;SPV=0.033883;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:55,11:29,7:26,4
+chr13	78665322	.	A	C	0	PASS	DP=19;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:1,2:0,1:1,1
+chr13	81904389	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:6,1:11,3
+chr13	82169368	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:10,2:3,3
+chr13	82458884	.	T	TA	0	PASS	DP=49;GPV=1;SPV=0.0016308;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:12,6:4,2
+chr13	85227345	.	T	A	0	PASS	DP=55;GPV=1;SPV=0.0010272;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:13,4:7,6
+chr13	85333993	.	T	G	0	PASS	DP=44;GPV=1;SPV=0.0026298;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:3,4:9,2
+chr13	85922076	.	A	G	0	PASS	DP=59;GPV=1;SPV=0.00013428;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:12,5:5,5
+chr13	86063548	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.00070165;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:8,5:5,4
+chr13	86498492	.	G	T	0	PASS	DP=25;GPV=1;SPV=0.093333;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:4,1:2,1
+chr13	87124262	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.0067244;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:9,3:3,3
+chr13	88200508	.	C	A	0	PASS	DP=28;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:2,3:4,2
+chr13	91746505	.	A	T	0	PASS	DP=65;GPV=1;SPV=0.060769;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:19,3:14,2
+chr13	92930628	.	TATATATTCCAGATATAA	T	0	PASS	DP=45;GPV=1;SPV=0.0043101;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,7:8,3:6,4
+chr13	93376776	.	CT	C	0	PASS	DP=45;GPV=1;SPV=0.00056132;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:7,6:6,3
+chr13	93667735	.	G	GTTTTTTTTTT	0	PASS	DP=39;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,5:11,4:7,1
+chr13	93905097	.	A	AG	0	PASS	DP=28;GPV=1;SPV=0.0025519;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:4,10:2,7:2,3
+chr13	94088595	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:0,2:0,2:0,0
+chr13	94288946	.	GATAGATAT	G	0	PASS	DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,3:0,1
+chr13	94585799	.	CA	C	0	PASS	DP=39;GPV=1;SPV=0.0051416;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:10,6:5,4
+chr13	96105006	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,4:6,3:4,1
+chr13	97790091	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.00030733;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:6,4:8,4
+chr13	97852692	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,4:8,2:7,2
+chr13	97860642	.	CA	C	0	PASS	DP=27;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,7:3,6:1,1
+chr13	99414007	.	T	TACACACAC	0	PASS	DP=38;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,8:4,5:7,3
+chr13	100463335	.	GGT	G	0	PASS	DP=35;GPV=1;SPV=0.0080645;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:3,3:4,1
+chr13	101362815	.	C	T	0	PASS	DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:10,3:6,8
+chr13	102189022	.	GAAGA	G	0	PASS	DP=47;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,4:8,3:6,1
+chr13	103563902	.	G	T	0	PASS	DP=72;GPV=1;SPV=1.6063e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:10,9:9,6
+chr13	104490654	.	G	A	0	PASS	DP=55;GPV=1;SPV=3.0818e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,12:8,5:3,7
+chr13	105089164	.	ATATATTTATATATATGTGTATACATATATGTATATATT	A	0	PASS	DP=32;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,5:4,2:4,3
+chr13	105684597	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:13,3:13,1
+chr13	105788377	.	C	T	0	PASS	DP=70;GPV=1;SPV=3.3475e-10;SS=2;SSC=94;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:11,21:3,5:8,16
+chr13	106472885	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.029272;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:6,3:12,1
+chr13	107911166	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.00091327;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:6,6:9,2
+chr13	108348447	.	CTCTCTCTG	C	0	PASS	DP=51;GPV=1;SPV=0.0033365;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:6,6:8,5
+chr13	108425575	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.001961;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:14,7:15,5
+chr13	109330635	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.0004259;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:15,7:7,3
+chr13	110497503	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.0094538;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,1:5,3
+chr13	110894963	.	T	A	0	PASS	DP=51;GPV=1;SPV=4.2116e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:9,8:5,5
+chr13	112333425	.	C	T	0	PASS	DP=73;GPV=1;SPV=3.2072e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:20,20:13,11:7,9
+chr13	113547177	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.0018932;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:8,4:14,5
+chr13	113940556	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:1,1:5,2
+chr14	18275552	.	T	G	0	PASS	DP=40;GPV=1;SPV=0.0010797;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:6,4:7,7
+chr14	18659364	.	T	A	0	PASS	DP=139;GPV=1;SPV=0.025834;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:52,14:32,8:20,6
+chr14	18661329	.	C	T	0	PASS	DP=157;GPV=1;SPV=0.031534;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:67,19:22,5:45,14
+chr14	18927932	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,2:2,2
+chr14	19002747	.	C	T	0	PASS	DP=229;GPV=1;SPV=0.029561;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:87,18:40,10:47,8
+chr14	19058704	.	A	T	0	PASS	DP=74;GPV=1;SPV=0.02706;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:12,3:20,2
+chr14	19058850	.	C	A	0	PASS	DP=101;GPV=1;SPV=0.037114;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:15,4:26,4
+chr14	19059168	.	T	A	0	PASS	DP=119;GPV=1;SPV=0.042542;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:53,11:36,8:17,3
+chr14	19074202	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:18,2:12,2
+chr14	19126082	.	T	G	0	PASS	DP=105;GPV=1;SPV=0.041077;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:19,8:18,3
+chr14	19161348	.	AG	A	0	PASS	DP=169;GPV=1;SPV=0.033162;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:68,16:31,9:37,7
+chr14	19170300	.	C	CTCTA	0	PASS	DP=132;GPV=1;SPV=0.0043066;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:60,9:25,7:35,2
+chr14	19176820	.	T	G	0	PASS	DP=143;GPV=1;SPV=0.0055223;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:58,16:30,8:28,8
+chr14	19241644	.	G	A	0	PASS	DP=112;GPV=1;SPV=0.014214;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:21,4:23,1
+chr14	19267795	.	C	T	0	PASS	DP=124;GPV=1;SPV=0.00055263;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:51,10:29,5:22,5
+chr14	19276455	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.032961;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:20,4:12,2
+chr14	19363580	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.042412;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:6,2:9,2
+chr14	19371982	.	T	C	0	PASS	DP=183;GPV=1;SPV=0.012376;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:70,17:33,6:37,11
+chr14	19380912	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.049837;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:22,7:18,6
+chr14	19391950	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr14	19433678	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.0088061;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:6,5:2,2
+chr14	19475827	.	T	TA	0	PASS	DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:3,2:7,2
+chr14	19666234	.	C	T	0	PASS	DP=158;GPV=1;SPV=0.043643;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:62,13:31,10:31,3
+chr14	19678523	.	T	C	0	PASS	DP=130;GPV=1;SPV=0.03683;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:54,6:26,3:28,3
+chr14	19716664	.	CTTTTT	C	0	PASS	DP=24;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:8,3:1,1
+chr14	19780669	.	C	T	0	PASS	DP=118;GPV=1;SPV=0.0093558;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:19,4:24,9
+chr14	20352568	.	T	G	0	PASS	DP=35;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,5:4,3:2,2
+chr14	23422586	.	TCTTTCTTTCTCTC	T	0	PASS	DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:7,3:7,2
+chr14	24088803	.	AT	A	0	PASS	DP=41;GPV=1;SPV=0.017469;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:5,2:6,6
+chr14	24206345	.	A	G	0	PASS	DP=69;GPV=1;SPV=1.0256e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:11,10:8,8
+chr14	25232587	.	T	TCTCC	0	PASS	DP=19;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:1,1:3,3
+chr14	27961347	.	C	CT	0	PASS	DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:15,3:12,1
+chr14	28674553	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.0029061;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:12,7:8,4
+chr14	30361142	.	C	A	0	PASS	DP=59;GPV=1;SPV=0.00047821;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:11,6:9,4
+chr14	30532663	.	CTTTT	C	0	PASS	DP=18;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:2,4:1,1
+chr14	31937328	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:16,2:14,2
+chr14	32462901	.	C	CA	0	PASS	DP=24;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,4:1,0
+chr14	32687408	.	C	A	0	PASS	DP=32;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,2:3,1:4,1
+chr14	33087171	.	T	TA	0	PASS	DP=44;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,4:5,1:13,3
+chr14	34643055	.	AT	A	0	PASS	DP=44;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,2:1,1:3,1
+chr14	35240294	.	C	CTTT	0	PASS	DP=19;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,2:3,2:0,0
+chr14	36798902	.	A	AAG	0	PASS	DP=39;GPV=1;SPV=0.018018;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:4,6:5,1
+chr14	40019808	.	T	TCACACA	0	PASS	DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:7,5:6,4
+chr14	41167237	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:11,4:7,3
+chr14	41175901	.	G	A	0	PASS	DP=63;GPV=1;SPV=1.9448e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:7,3:10,9
+chr14	41243449	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.00010136;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:9,5:6,6
+chr14	41808408	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,2:4,2:0,0
+chr14	42051447	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.009581;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:2,6:9,2
+chr14	42070911	.	TTCTCTCTCTC	T	0	PASS	DP=35;GPV=1;SPV=0.0055972;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,9:3,6:4,3
+chr14	42159445	.	C	CTTTCTTTCT	0	PASS	DP=29;GPV=1;SPV=0.055556;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:3,1:2,1
+chr14	45416861	.	C	A	0	PASS	DP=56;GPV=1;SPV=0.002243;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:10,2:3,3
+chr14	48315922	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.0001844;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:6,8:8,1
+chr14	50122391	.	C	CT	0	PASS	DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:4,5:2,1
+chr14	51144228	.	C	CAT	0	PASS	DP=24;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,2:3,1:1,1
+chr14	52656711	.	CA	C	0	PASS	DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:7,4:3,4
+chr14	52786059	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,6:2,4:0,2
+chr14	54862379	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,2:4,2:0,0
+chr14	56705573	.	C	CAAAA	0	PASS	DP=42;GPV=1;SPV=0.0024876;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,13:8,11:4,2
+chr14	56935197	.	TTCTTTTCTTTC	T	0	PASS	DP=58;GPV=1;SPV=0.0025247;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,16:4,6:15,10
+chr14	58962926	.	C	CTA	0	PASS	DP=37;GPV=1;SPV=0.26049;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:21,3:12,2:9,1
+chr14	59175182	.	TA	T	0	PASS	DP=57;GPV=1;SPV=0.0069576;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:11,4:9,5
+chr14	61746397	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.019737;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:8,3:2,5
+chr14	61938026	.	A	AACACACACACACACAC	0	PASS	DP=27;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,8:4,6:2,2
+chr14	62908782	.	AT	A	0	PASS	DP=19;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,4:4,2:1,2
+chr14	64428107	.	T	G	0	PASS	DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,1:3,4
+chr14	64657457	.	TG	T	0	PASS	DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:1,1:3,6
+chr14	64785351	.	GAA	G	0	PASS	DP=39;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,4:3,2
+chr14	65123077	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:4,5:3,1
+chr14	65810255	.	ATTTGGCTCCC	A	0	PASS	DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:7,3:6,4
+chr14	66154886	.	G	GATAGAT	0	PASS	DP=46;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:10,4:6,3
+chr14	69102591	.	G	GACACACACACACACAC	0	PASS	DP=27;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,6:3,3:1,3
+chr14	69776603	.	A	G	0	PASS	DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:16,3:12,1
+chr14	70860105	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.018691;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,6:1,4:6,2
+chr14	71263275	.	CT	C	0	PASS	DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:1,4:6,5
+chr14	71590042	.	AAAATATAT	A	0	PASS	DP=29;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:6,3:4,2
+chr14	72990689	.	CTT	C	0	PASS	DP=19;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:2,1:2,3
+chr14	73045353	.	AT	A	0	PASS	DP=23;GPV=1;SPV=0.0049438;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:3,3:0,3
+chr14	76333418	.	TATC	T	0	PASS	DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:9,5:0,1
+chr14	76333425	.	T	TG	0	PASS	DP=35;GPV=1;SPV=0.00054683;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:8,5:0,3
+chr14	76799906	.	GA	G	0	PASS	DP=26;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:5,7:4,1
+chr14	78550538	.	AAAC	A	0	PASS	DP=55;GPV=1;SPV=1.0239e-06;SS=2;SSC=59;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:7,5:4,9
+chr14	79064707	.	TATTTTTCATAATTACCC	T	0	PASS	DP=38;GPV=1;SPV=0.0092138;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:10,1:4,6
+chr14	79064727	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.0092138;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:10,2:4,5
+chr14	79064735	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.012068;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:11,2:4,4
+chr14	79064737	.	ATG	A	0	PASS	DP=42;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:10,2:4,5
+chr14	80996590	.	G	C	0	PASS	DP=60;GPV=1;SPV=0.021791;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:8,2:12,2
+chr14	81265647	.	G	GTAATAATAATAATAATAATAA	0	PASS	DP=39;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:4,7:3,5:1,2
+chr14	81593003	.	TTCTC	T	0	PASS	DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,3:6,2
+chr14	81599517	.	G	GTTTTTC	0	PASS	DP=45;GPV=1;SPV=0.0001418;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:5,3:3,4
+chr14	81645964	.	ATT	A	0	PASS	DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:3,6:1,1
+chr14	83882802	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.018159;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,3:9,1
+chr14	84641209	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.0041266;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:16,11:8,2:8,9
+chr14	84814695	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,3:0,0:4,3
+chr14	84870460	.	G	GT	0	PASS	DP=44;GPV=1;SPV=0.0036228;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,9:13,6:3,3
+chr14	85361378	.	C	T	0	PASS	DP=53;GPV=1;SPV=3.2748e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:7,7:6,4
+chr14	87516712	.	GC	G	0	PASS	DP=63;GPV=1;SPV=3.5057e-06;SS=2;SSC=54;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,18:13,8:5,10
+chr14	87606497	.	G	A	0	PASS	DP=68;GPV=1;SPV=1.5334e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:17,21:11,8:6,13
+chr14	87781407	.	C	T	0	PASS	DP=71;GPV=1;SPV=1.1265e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:7,8:9,9
+chr14	88755840	.	T	A	0	PASS	DP=54;GPV=1;SPV=1.9493e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,12:8,5:5,7
+chr14	90126531	.	CTTG	C	0	PASS	DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:8,4:8,5
+chr14	91318917	.	C	CAAA	0	PASS	DP=31;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:4,5:4,1
+chr14	91519138	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.083004;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,2:5,1:0,1
+chr14	91915686	.	C	CA	0	PASS	DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:1,3:3,1
+chr14	92767689	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,3:4,1
+chr14	93234186	.	AT	A	0	PASS	DP=30;GPV=1;SPV=0.0017181;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,8:2,7:0,1
+chr14	93452375	.	ATT	A	0	PASS	DP=42;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,4:9,2:4,2
+chr14	94540842	.	T	TTCTC	0	PASS	DP=24;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,6:1,4:2,2
+chr14	94648586	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,4:3,3:1,1
+chr14	94897018	.	C	A	0	PASS	DP=57;GPV=1;SPV=0.0042869;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:12,6:12,3
+chr14	95610788	.	AAG	A	0	PASS	DP=34;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:5,1:3,4
+chr14	95766412	.	A	AT	0	PASS	DP=39;GPV=1;SPV=0.0012644;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:5,4:5,3
+chr14	98014124	.	CCTTTCTTTCT	C	0	PASS	DP=28;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,4:0,0:14,4
+chr14	98115803	.	A	AT	0	PASS	DP=41;GPV=1;SPV=0.014742;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:5,5:7,2
+chr14	98155143	.	TATAGAG	T	0	PASS	DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:3,7:8,2
+chr14	98234881	.	TGATAGATAGATGATAGATA	T	0	PASS	DP=53;GPV=1;SPV=0.043209;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,8:9,4:9,4
+chr14	98234915	.	TA	T	0	PASS	DP=51;GPV=1;SPV=0.0052029;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,12:8,7:7,5
+chr14	99410862	.	G	A	0	PASS	DP=47;GPV=1;SPV=9.9525e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:9,5:4,7
+chr14	99826105	.	AT	A	0	PASS	DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,3:4,1
+chr14	100198742	.	C	CA	0	PASS	DP=32;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:3,4:4,1
+chr14	100931842	.	TATATATA	T	0	PASS	DP=28;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:14:1,3:0,2:1,1
+chr14	104204478	.	A	G	0	PASS	DP=24;GPV=1;SPV=0.0032734;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,7:1,2:2,5
+chr14	105654000	.	G	C	0	PASS	DP=61;GPV=1;SPV=0.013714;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:9,5:8,4
+chr14	105736712	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:2,2:12,4
+chr14	105736981	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.037012;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:13,5:6,2
+chr14	105749983	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.047874;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:21,5:7,3
+chr14	105755579	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.047169;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:10,2:16,7
+chr14	106327993	.	C	G	0	PASS	DP=183;GPV=1;SPV=0.0082929;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:72,17:39,13:33,4
+chr14	106351142	.	CT	C	0	PASS	DP=173;GPV=1;SPV=0.013419;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:68,18:39,7:29,11
+chr15	18366043	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:1,1:9,3
+chr15	18566117	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:27,4:0,0
+chr15	19222180	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:18,4:0,0
+chr15	19563637	.	T	C	0	PASS	DP=872;GPV=1;SPV=0.00095602;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:413:366,46:182,40:184,6
+chr15	19835775	.	G	A	0	PASS	DP=25;GPV=1;SPV=2.6922e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:1,11:1,3:0,8
+chr15	19902524	.	A	C	0	PASS	DP=105;GPV=1;SPV=0.038854;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:38,8:10,1:28,7
+chr15	19925830	.	C	A	0	PASS	DP=162;GPV=1;SPV=0.022371;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:64,15:17,6:47,9
+chr15	20115657	.	T	G	0	PASS	DP=75;GPV=1;SPV=0.03557;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:17,6:15,4
+chr15	20119707	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.035271;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:10,3:22,3
+chr15	20120551	.	ACAAG	A	0	PASS	DP=100;GPV=1;SPV=0.03948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:29,5:12,1
+chr15	20256614	.	C	T	0	PASS	DP=202;GPV=1;SPV=0.01383;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:74,20:30,12:44,8
+chr15	20272696	.	C	A	0	PASS	DP=254;GPV=1;SPV=0.001875;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:100,25:58,10:42,15
+chr15	20284725	.	T	A	0	PASS	DP=193;GPV=1;SPV=0.023429;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:73,18:35,13:38,5
+chr15	20289416	.	T	C	0	PASS	DP=201;GPV=1;SPV=0.020621;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:77,17:35,8:42,9
+chr15	20290883	.	G	C	0	PASS	DP=229;GPV=1;SPV=0.035787;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:92,21:39,7:53,14
+chr15	20291056	.	A	G	0	PASS	DP=175;GPV=1;SPV=0.045569;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:71,15:38,7:33,8
+chr15	20295526	.	C	A	0	PASS	DP=265;GPV=1;SPV=0.0046454;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:106,19:46,6:60,13
+chr15	20304167	.	C	A	0	PASS	DP=314;GPV=1;SPV=0.047629;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:147:126,21:59,14:67,7
+chr15	20309845	.	TGAG	T	0	PASS	DP=136;GPV=1;SPV=0.026602;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:72,10:36,5:36,5
+chr15	20309922	.	TGATGA	T	0	PASS	DP=142;GPV=1;SPV=0.020878;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:54,13:28,8:26,5
+chr15	20338110	.	A	G	0	PASS	DP=173;GPV=1;SPV=0.046849;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:66,15:29,12:37,3
+chr15	20357686	.	G	A	0	PASS	DP=281;GPV=1;SPV=0.036447;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:105,20:65,11:40,9
+chr15	20370348	.	AATTGAGTTCTC	A	0	PASS	DP=182;GPV=1;SPV=0.036478;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:80,16:39,7:41,9
+chr15	20372213	.	C	T	0	PASS	DP=184;GPV=1;SPV=0.019044;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:71,16:45,7:26,9
+chr15	20393186	.	A	AT	0	PASS	DP=186;GPV=1;SPV=0.025654;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:70,10:38,4:32,6
+chr15	20415832	.	T	C	0	PASS	DP=190;GPV=1;SPV=0.0087716;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:64,16:28,8:36,8
+chr15	20555222	.	GTATATGTGTAAATA	G	0	PASS	DP=84;GPV=1;SPV=0.029438;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:21,5:13,4
+chr15	20586743	.	C	CT	0	PASS	DP=63;GPV=1;SPV=0.034134;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:9,6:13,4
+chr15	20644036	.	A	G	0	PASS	DP=174;GPV=1;SPV=0.047122;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:73,14:42,8:31,6
+chr15	20665834	.	C	CAA	0	PASS	DP=175;GPV=1;SPV=0.0028234;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:71,19:34,9:37,10
+chr15	20741316	.	C	CAAAAA	0	PASS	DP=19;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:2,4:3,1
+chr15	21248951	.	A	T	0	PASS	DP=63;GPV=1;SPV=0.047338;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:3,4:22,2
+chr15	21278485	.	A	G	0	PASS	DP=175;GPV=1;SPV=0.033668;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:69,17:38,10:31,7
+chr15	21285805	.	C	T	0	PASS	DP=181;GPV=1;SPV=0.045959;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:72,16:40,7:32,9
+chr15	21291652	.	G	A	0	PASS	DP=170;GPV=1;SPV=0.0045101;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:62,21:27,9:35,12
+chr15	21465543	.	A	G	0	PASS	DP=112;GPV=1;SPV=0.016976;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:47,10:29,7:18,3
+chr15	21516684	.	GC	G	0	PASS	DP=78;GPV=1;SPV=0.031256;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:19,6:14,4
+chr15	21540209	.	T	TA	0	PASS	DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,4:4,1
+chr15	21577313	.	G	C	0	PASS	DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:12,2:5,2
+chr15	21620069	.	A	T	0	PASS	DP=47;GPV=1;SPV=0.027568;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:11,5:10,1
+chr15	21835845	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.0057417;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:6,7:1,1
+chr15	21944626	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.008578;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:15,6:20,7
+chr15	22286257	.	G	GTAGGAATTATGTATTCTGT	0	PASS	DP=116;GPV=1;SPV=0.046919;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:49,8:25,6:24,2
+chr15	22361138	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.03461;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:10,3:15,7
+chr15	22422114	.	T	G	0	PASS	DP=144;GPV=1;SPV=0.047443;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:60,9:29,6:31,3
+chr15	22443264	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.047789;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:8,3:18,3
+chr15	23196478	.	G	T	0	PASS	DP=106;GPV=1;SPV=0.0029389;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:27,5:18,3
+chr15	23356879	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:14,5:2,1
+chr15	23440678	.	ATCT	A	0	PASS	DP=55;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:14,2:6,7
+chr15	23487784	.	A	AAC	0	PASS	DP=19;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:3,3:0,2
+chr15	23864016	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:15,5:12,1
+chr15	24264280	.	C	T	0	PASS	DP=60;GPV=1;SPV=2.0129e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:9,10:4,3
+chr15	24509453	.	C	A	0	PASS	DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:17,4:14,1
+chr15	25999667	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:0,2:4,2
+chr15	27138743	.	A	G	0	PASS	DP=64;GPV=1;SPV=1.7114e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:18,20:3,9:15,11
+chr15	27918089	.	AT	A	0	PASS	DP=33;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,6:5,3:5,3
+chr15	28377531	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.0081269;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:1,4:3,1
+chr15	28488115	.	AAG	A	0	PASS	DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:6,2:21,3
+chr15	28518992	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:5,3:0,0
+chr15	28545571	.	T	TGG	0	PASS	DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,2:6,2
+chr15	28589129	.	C	G	0	PASS	DP=69;GPV=1;SPV=0.040413;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:12,6:16,3
+chr15	28589899	.	C	A	0	PASS	DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:16,4:12,2
+chr15	28598282	.	A	T	0	PASS	DP=42;GPV=1;SPV=0.0051722;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,4:5,2
+chr15	29294729	.	G	A	0	PASS	DP=60;GPV=1;SPV=3.8821e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:7,4:7,9
+chr15	29527891	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.00022196;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:9,5:7,5
+chr15	29587138	.	CGT	C	0	PASS	DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,4:3,2
+chr15	30442318	.	A	T	0	PASS	DP=80;GPV=1;SPV=0.013504;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:11,2:19,3
+chr15	30998088	.	C	CAAAAAAAA	0	PASS	DP=37;GPV=1;SPV=0.0091688;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,8:1,7:2,1
+chr15	32562048	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:9,6:4,3
+chr15	32848149	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.004102;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:13,5:13,3
+chr15	33224691	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.047958;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:9,4:8,2
+chr15	33317307	.	T	C	0	PASS	DP=48;GPV=1;SPV=2.4108e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,14:3,9:4,5
+chr15	35397859	.	T	TTATA	0	PASS	DP=39;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,5:8,2:8,3
+chr15	35727930	.	G	GCGTGCGCGCGCGCACACA	0	PASS	DP=45;GPV=1;SPV=0.011637;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:8,8:9,6
+chr15	35971864	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.00047821;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:8,8:12,2
+chr15	36930202	.	T	TA	0	PASS	DP=48;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,8:11,3:9,5
+chr15	37695262	.	T	TTC	0	PASS	DP=30;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,4:5,2:1,2
+chr15	37893878	.	G	T	0	PASS	DP=56;GPV=1;SPV=2.706e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:14,17:9,7:5,10
+chr15	38282343	.	ATG	A	0	PASS	DP=47;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,4:5,1:7,3
+chr15	39744820	.	C	T	0	PASS	DP=33;GPV=1;SPV=0.0059696;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:4,2:4,6
+chr15	40573020	.	C	CTTT	0	PASS	DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,3:2,1
+chr15	41960670	.	A	AT	0	PASS	DP=29;GPV=1;SPV=0.0010995;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,5:1,1
+chr15	43117519	.	C	T	0	PASS	DP=58;GPV=1;SPV=3.6255e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:10,13:5,5:5,8
+chr15	43628891	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.001514;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,13:8,11:8,2
+chr15	44962347	.	A	AT	0	PASS	DP=41;GPV=1;SPV=0.15499;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:10,2:7,3
+chr15	47772357	.	C	CGT	0	PASS	DP=33;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,5:1,3:3,2
+chr15	49616645	.	A	C	0	PASS	DP=39;GPV=1;SPV=0.0023473;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:9,3:4,6
+chr15	50629859	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.0012626;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:0,7:0,4:0,3
+chr15	50762735	.	C	CT	0	PASS	DP=32;GPV=1;SPV=0.014912;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,2:5,3
+chr15	53729496	.	C	A	0	PASS	DP=46;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:10,3:10,1
+chr15	55210195	.	G	GTATA	0	PASS	DP=35;GPV=1;SPV=0.013455;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:7,1:4,4
+chr15	55210208	.	C	CAT	0	PASS	DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,1:7,3
+chr15	55262545	.	G	GA	0	PASS	DP=26;GPV=1;SPV=0.014569;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:1,6:1,3:0,3
+chr15	55822490	.	ACT	A	0	PASS	DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:9,4:5,3
+chr15	56484874	.	T	TG	0	PASS	DP=53;GPV=1;SPV=0.0077143;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:8,4:11,2
+chr15	57123996	.	TC	T	0	PASS	DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:2,1:6,3
+chr15	59592718	.	GTTT	G	0	PASS	DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:6,3:3,1
+chr15	59658155	.	CAA	C	0	PASS	DP=22;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,4:3,3:2,1
+chr15	59740539	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.048504;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:5,3:7,3
+chr15	60037718	.	G	GACACAC	0	PASS	DP=34;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:5,9:4,7:1,2
+chr15	60668964	.	C	A	0	PASS	DP=51;GPV=1;SPV=0.022618;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,4:10,1
+chr15	61008651	.	G	A	0	PASS	DP=64;GPV=1;SPV=4.363e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,13:11,6:9,7
+chr15	61778569	.	AAAGGAAGGAAGG	A	0	PASS	DP=32;GPV=1;SPV=0.0017499;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:5,8:4,4:1,4
+chr15	62282875	.	G	A	0	PASS	DP=61;GPV=1;SPV=7.0453e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,10:8,4:8,6
+chr15	63932164	.	T	TAA	0	PASS	DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,3:6,2
+chr15	64002916	.	CTGTG	C	0	PASS	DP=31;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,7:3,6:2,1
+chr15	65160621	.	TCTCA	T	0	PASS	DP=31;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:2,3:8,5
+chr15	66596799	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:10,2:4,2
+chr15	68235593	.	T	A	0	PASS	DP=23;GPV=1;SPV=0.125;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:4,2:0,0
+chr15	68402842	.	A	G	0	PASS	DP=57;GPV=1;SPV=2.1392e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:5,7:4,3
+chr15	69260252	.	GT	G	0	PASS	DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:7,2:7,2
+chr15	69810400	.	AACACAC	A	0	PASS	DP=38;GPV=1;SPV=0.00036978;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,13:7,7:1,6
+chr15	69993318	.	GAAAGAGAC	G	0	PASS	DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,4:4,2
+chr15	70364401	.	A	AT	0	PASS	DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:2,2:2,3
+chr15	72482839	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.015907;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,7:2,5:8,2
+chr15	72660853	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:3,4:0,1
+chr15	74303679	.	C	T	0	PASS	DP=87;GPV=1;SPV=3.5745e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:30,13:19,9:11,4
+chr15	74939066	.	C	CAAAAAAAAA	0	PASS	DP=32;GPV=1;SPV=0.036707;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:2,2:5,2
+chr15	75266350	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:0,0:19,4
+chr15	75376695	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,2:1,1:6,1
+chr15	75481742	.	G	T	0	PASS	DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:12,4:0,0
+chr15	75491402	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.019042;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,10:12,6:2,4
+chr15	75528695	.	AT	A	0	PASS	DP=42;GPV=1;SPV=0.0053554;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:7,15:4,7:3,8
+chr15	75615594	.	A	AT	0	PASS	DP=26;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:6,4:4,1
+chr15	75782577	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:11,2:10,2
+chr15	76249435	.	A	ATC	0	PASS	DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:3,4:4,7
+chr15	77277556	.	G	A	0	PASS	DP=66;GPV=1;SPV=1.8785e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,14:10,7:6,7
+chr15	77497684	.	T	A	0	PASS	DP=36;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:18:1,7:1,4:0,3
+chr15	77528920	.	G	GT	0	PASS	DP=54;GPV=1;SPV=0.007251;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:4,7:8,2
+chr15	78386955	.	G	GTTTTTT	0	PASS	DP=38;GPV=1;SPV=0.0020026;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:7,9:3,3
+chr15	78877113	.	ATTTT	A	0	PASS	DP=31;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,7:5,5:1,2
+chr15	79847669	.	CA	C	0	PASS	DP=24;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,9:4,8:2,1
+chr15	80832324	.	G	C	0	PASS	DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,3:4,3
+chr15	81356253	.	A	G	0	PASS	DP=55;GPV=1;SPV=1.7201e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:7,9:4,4
+chr15	81878296	.	T	TCTCTCTCTCTCC	0	PASS	DP=21;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,5:1,1:2,4
+chr15	82383908	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.025565;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:2,2:5,3
+chr15	82483047	.	G	C	0	PASS	DP=41;GPV=1;SPV=0.018356;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:7,1:6,6
+chr15	82497785	.	C	CAA	0	PASS	DP=43;GPV=1;SPV=0.0018936;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,6:4,5:3,1
+chr15	83393258	.	CT	C	0	PASS	DP=50;GPV=1;SPV=0.014488;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:15,5:5,1
+chr15	84765535	.	G	GT	0	PASS	DP=58;GPV=1;SPV=0.029874;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:6,4:11,1
+chr15	85251985	.	CT	C	0	PASS	DP=45;GPV=1;SPV=0.031261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:8,3:7,3
+chr15	85252017	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:10,3:11,3
+chr15	85841979	.	CT	C	0	PASS	DP=31;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,8:1,7:5,1
+chr15	85844597	.	CAA	C	0	PASS	DP=24;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,6:2,3:3,3
+chr15	85989649	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:10,5:7,1
+chr15	86553517	.	C	T	0	PASS	DP=69;GPV=1;SPV=4.8252e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:12,6:9,11
+chr15	88474552	.	T	TC	0	PASS	DP=61;GPV=1;SPV=0.03699;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,7:13,4:7,3
+chr15	88923804	.	C	CAAAAACA	0	PASS	DP=54;GPV=1;SPV=0.042412;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,4:7,2:8,2
+chr15	88966785	.	T	TTGTTTTATTTTTTGTTTG	0	PASS	DP=44;GPV=1;SPV=0.0045015;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:6,3:6,5
+chr15	89944102	.	C	CA	0	PASS	DP=26;GPV=1;SPV=0.0026087;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:3,5:3,2
+chr15	90496306	.	CTTTTTTTTTTTT	C	0	PASS	DP=21;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,3:3,2
+chr15	91337841	.	A	ATTTTTTT	0	PASS	DP=25;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,5:1,3:2,2
+chr15	91871753	.	TG	T	0	PASS	DP=31;GPV=1;SPV=0.0067841;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:3,6:5,5
+chr15	93100836	.	CTTTTTTTTTTTTTTTTTTTTTT	C	0	PASS	DP=23;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:3,4:0,0
+chr15	93978594	.	TTC	T	0	PASS	DP=26;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:0,3:7,4
+chr15	96477154	.	T	TATTATATATATATATATATATAA	0	PASS	DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:10,2:7,3
+chr15	96554807	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:1,4:0,0:1,4
+chr15	98381629	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.01454;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:12,2:9,4
+chr15	100467152	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.024548;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:12,1:6,4
+chr15	101860790	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.00032976;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:13,5:12,8
+chr15	101954372	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.0020073;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:4,5:13,8
+chr16	1250930	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.0074932;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:8,6:4,1
+chr16	4774608	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.013362;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:3,3:6,3
+chr16	6416298	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:16,2:6,4
+chr16	6664339	.	G	T	0	PASS	DP=58;GPV=1;SPV=0.012279;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:14,6:13,2
+chr16	6798990	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.018514;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,2:10,3
+chr16	7112644	.	G	C	0	PASS	DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:4,6:7,1
+chr16	7120821	.	ATG	A	0	PASS	DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:8,2:12,2
+chr16	7203667	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:13,2:6,8
+chr16	9830480	.	CA	C	0	PASS	DP=30;GPV=1;SPV=0.00088417;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:3,4:1,1
+chr16	10380850	.	CT	C	0	PASS	DP=55;GPV=1;SPV=0.036143;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:7,1:13,5
+chr16	10439049	.	C	CAA	0	PASS	DP=29;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:4,5:2,3:2,2
+chr16	12062377	.	A	AAAAT	0	PASS	DP=53;GPV=1;SPV=0.011613;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:5,7:12,3
+chr16	13622488	.	CTG	C	0	PASS	DP=32;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:11,1:4,3
+chr16	14928709	.	G	C	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr16	14982188	.	T	G	0	PASS	DP=141;GPV=1;SPV=0.022391;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:60,7:38,3:22,4
+chr16	15103660	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.013238;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:5,1:5,7
+chr16	15202829	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.007006;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:6,4:12,5
+chr16	16134625	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:1,3:3,1
+chr16	16160628	.	CAA	C	0	PASS	DP=23;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:4,4:2,1
+chr16	16444695	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.0033619;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:11,3:8,6
+chr16	16447974	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.046007;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:11,3:15,1
+chr16	16550592	.	A	ATTT	0	PASS	DP=48;GPV=1;SPV=0.0025265;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,2:7,7
+chr16	16720265	.	T	TTG	0	PASS	DP=46;GPV=1;SPV=0.0062751;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:6,7:7,4
+chr16	16829613	.	ATTTTTTT	A	0	PASS	DP=36;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,7:4,3:1,4
+chr16	17204966	.	CAA	C	0	PASS	DP=37;GPV=1;SPV=0.025944;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,5:4,2
+chr16	17643997	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,4:3,2:6,2
+chr16	17916004	.	C	T	0	PASS	DP=71;GPV=1;SPV=1.5771e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,14:9,9:13,5
+chr16	18181093	.	G	C	0	PASS	DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:10,3:18,1
+chr16	18237898	.	C	G	0	PASS	DP=70;GPV=1;SPV=0.037749;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:18,4:9,2
+chr16	18963513	.	ATG	A	0	PASS	DP=39;GPV=1;SPV=0.011088;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:5,5:10,2
+chr16	18963517	.	T	A	0	PASS	DP=33;GPV=1;SPV=0.0072303;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,5:6,1
+chr16	20138748	.	GTTTTTTT	G	0	PASS	DP=25;GPV=1;SPV=0.013124;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,8:2,5:5,3
+chr16	21155621	.	CAA	C	0	PASS	DP=32;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,6:3,4:3,2
+chr16	21675063	.	GTCTT	G	0	PASS	DP=41;GPV=1;SPV=0.00047718;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:5,11:2,4:3,7
+chr16	22681401	.	CA	C	0	PASS	DP=69;GPV=1;SPV=0.010119;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,6:16,4:11,2
+chr16	22824558	.	A	G	0	PASS	DP=43;GPV=1;SPV=0.040656;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:4,3:11,3
+chr16	23020660	.	CTTTTTTTTTTTT	C	0	PASS	DP=25;GPV=1;SPV=0.0011576;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:3,13:0,7:3,6
+chr16	25746742	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.0010337;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,14:9,7:6,7
+chr16	25993949	.	CGTGTGT	C	0	PASS	DP=31;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:3,6:4,1
+chr16	26005732	.	GA	G	0	PASS	DP=51;GPV=1;SPV=0.00054483;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:11,8:7,4
+chr16	26238514	.	T	C	0	PASS	DP=43;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,4:1,2:5,2
+chr16	26417291	.	A	C	0	PASS	DP=33;GPV=1;SPV=0.0779;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:7,5:10,3
+chr16	26464372	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.00022959;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:5,2:8,6
+chr16	26653957	.	C	CTTTT	0	PASS	DP=31;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,5:3,4:0,1
+chr16	27000580	.	CTTTT	C	0	PASS	DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:9,3:2,1
+chr16	28361764	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.011858;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:4,15:0,4:4,11
+chr16	28424469	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr16	28738180	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.016411;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:10,6:5,2
+chr16	28739478	.	C	G	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:1,0:9,4
+chr16	29054144	.	C	A	0	PASS	DP=70;GPV=1;SPV=0.031533;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:20,3:6,3
+chr16	29445775	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr16	30016057	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:2,1:5,1
+chr16	30267081	.	T	G	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:14,4:0,0
+chr16	30466462	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,4:2,2
+chr16	30789230	.	C	CA	0	PASS	DP=32;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:9,3:3,1
+chr16	30817175	.	A	AT	0	PASS	DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:4,4:5,3
+chr16	31013407	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:1,2:0,1:1,1
+chr16	31149092	.	C	T	0	PASS	DP=50;GPV=1;SPV=6.8881e-09;SS=2;SSC=81;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:20:5,15:3,11:2,4
+chr16	31247659	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.012394;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:8,3:9,3
+chr16	31382130	.	G	A	0	PASS	DP=56;GPV=1;SPV=3.1132e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:8,6:7,6
+chr16	31757826	.	ATAGG	A	0	PASS	DP=44;GPV=1;SPV=0.0073773;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:7,2:7,7
+chr16	32096815	.	T	A	0	PASS	DP=144;GPV=1;SPV=0.0057363;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:55,19:15,6:40,13
+chr16	32107256	.	G	A	0	PASS	DP=181;GPV=1;SPV=0.0095044;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:75,14:17,10:58,4
+chr16	32107271	.	C	A	0	PASS	DP=170;GPV=1;SPV=0.0068574;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:71,13:15,9:56,4
+chr16	32159292	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:7,6:4,2
+chr16	32217275	.	T	G	0	PASS	DP=46;GPV=1;SPV=0.0034214;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:11,7:3,3
+chr16	32258018	.	A	T	0	PASS	DP=34;GPV=1;SPV=0.010674;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,1:8,3
+chr16	32298407	.	A	G	0	PASS	DP=110;GPV=1;SPV=0.014476;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:23,11:19,5
+chr16	32328266	.	C	A	0	PASS	DP=89;GPV=1;SPV=0.039273;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:19,5:14,6
+chr16	32812945	.	C	A	0	PASS	DP=100;GPV=1;SPV=0.03082;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:24,3:15,3
+chr16	32829994	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.020896;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:24,2:21,6
+chr16	32830026	.	G	C	0	PASS	DP=114;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:23,4:26,6
+chr16	32837836	.	G	C	0	PASS	DP=217;GPV=1;SPV=0.0063265;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:95,23:68,20:27,3
+chr16	32891234	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.0032243;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:8,4:3,2
+chr16	33026241	.	C	T	0	PASS	DP=165;GPV=1;SPV=0.038966;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:65,10:43,8:22,2
+chr16	33029546	.	G	A	0	PASS	DP=123;GPV=1;SPV=0.0042381;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:45,6:18,2:27,4
+chr16	33581695	.	C	CT	0	PASS	DP=62;GPV=1;SPV=0.040599;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:11,4:10,5
+chr16	33591570	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.012155;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:12,6:21,6
+chr16	33728041	.	A	ATTAAT	0	PASS	DP=71;GPV=1;SPV=0.020116;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:12,8:14,1
+chr16	34586236	.	T	C	0	PASS	DP=1574;GPV=1;SPV=0.018905;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:794:688,106:55,9:633,97
+chr16	34591720	.	T	TC	0	PASS	DP=868;GPV=1;SPV=0.017863;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:408:121,24:64,12:57,12
+chr16	35979167	.	A	G	0	PASS	DP=52;GPV=1;SPV=1.9714e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,16:4,5:5,11
+chr16	36241585	.	C	T	0	PASS	DP=68;GPV=1;SPV=4.9557e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,14:13,9:10,5
+chr16	36515521	.	G	C	0	PASS	DP=44;GPV=1;SPV=0.012544;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:15,5:3,2
+chr16	36671635	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.11538;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,4:6,4:0,0
+chr16	37862493	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.0058227;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:9,10:11,2
+chr16	38129102	.	T	A	0	PASS	DP=87;GPV=1;SPV=0.041058;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:25,3:11,1
+chr16	46456668	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:16,3:8,2
+chr16	46468062	.	T	G	0	PASS	DP=63;GPV=1;SPV=3.5767e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:9,9:6,4
+chr16	48316323	.	C	CTT	0	PASS	DP=23;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,6:4,5:2,1
+chr16	48527040	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.035909;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:16,4:17,2
+chr16	48579679	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.015379;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:9,4:8,1
+chr16	48927307	.	G	T	0	PASS	DP=60;GPV=1;SPV=0.00039851;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:8,4:12,6
+chr16	49688095	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,2:0,1:1,1
+chr16	51046768	.	CAA	C	0	PASS	DP=21;GPV=1;SPV=0.002838;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:2,6:2,1
+chr16	52105557	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.00065661;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:13,1:6,7
+chr16	54410785	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:1,2:1,1:0,1
+chr16	54833298	.	G	GACACACACAC	0	PASS	DP=26;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:0,6:0,3:0,3
+chr16	55426518	.	G	GCTCTCTCT	0	PASS	DP=37;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,6:6,5:3,1
+chr16	57362879	.	C	CA	0	PASS	DP=59;GPV=1;SPV=0.033939;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:10,2:16,3
+chr16	57877100	.	T	TA	0	PASS	DP=24;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:3,5:2,1
+chr16	59738855	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:16,3:4,1
+chr16	60446188	.	CAA	C	0	PASS	DP=33;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,2:5,2
+chr16	60506800	.	A	T	0	PASS	DP=77;GPV=1;SPV=0.0052479;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:15,5:16,2
+chr16	60819181	.	C	A	0	PASS	DP=58;GPV=1;SPV=0.022389;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:12,2:14,4
+chr16	60866253	.	T	TA	0	PASS	DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:9,6:6,1
+chr16	63238833	.	AAAGG	A	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,2:12,2
+chr16	63342623	.	C	T	0	PASS	DP=50;GPV=1;SPV=3.4337e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:7,7:4,3
+chr16	63831399	.	C	A	0	PASS	DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:3,4:6,3
+chr16	64104330	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:2,3:3,1
+chr16	64721892	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.00016168;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:6,5:11,5
+chr16	65555993	.	G	C	0	PASS	DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:8,5:3,1
+chr16	65687577	.	C	T	0	PASS	DP=62;GPV=1;SPV=1.1154e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,18:10,9:3,9
+chr16	68283590	.	AAG	A	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:11,3:17,1
+chr16	68735645	.	A	T	0	PASS	DP=19;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,3:1,1:2,2
+chr16	68811396	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:11,4:3,2
+chr16	69005788	.	CA	C	0	PASS	DP=33;GPV=1;SPV=0.0027337;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:8,6:2,5
+chr16	70120931	.	CTT	C	0	PASS	DP=28;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,4:0,2:4,2
+chr16	70174691	.	G	C	0	PASS	DP=93;GPV=1;SPV=0.046823;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:16,7:18,3
+chr16	71736551	.	ATTATTTAT	A	0	PASS	DP=33;GPV=1;SPV=0.037055;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:3,3:6,2
+chr16	72554038	.	C	CA	0	PASS	DP=30;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:6,3:6,2
+chr16	72822795	.	GT	G	0	PASS	DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,9:2,7:2,2
+chr16	73233108	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,10:2,8:4,2
+chr16	73890254	.	A	C	0	PASS	DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:5,3:4,3
+chr16	74395530	.	CT	C	0	PASS	DP=60;GPV=1;SPV=0.022661;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,7:13,6:8,1
+chr16	74838044	.	ATATATATG	A	0	PASS	DP=37;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:7,4:2,4
+chr16	75050776	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.00022655;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:6,13:1,3:5,10
+chr16	75354641	.	A	C	0	PASS	DP=74;GPV=1;SPV=1.7137e-11;SS=2;SSC=107;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:11,25:7,12:4,13
+chr16	76589820	.	C	T	0	PASS	DP=42;GPV=1;SPV=0.00037668;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:4,8:7,1
+chr16	77100673	.	T	A	0	PASS	DP=56;GPV=1;SPV=0.13182;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:26,3:15,2:11,1
+chr16	77153592	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.001026;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:13,7:11,3
+chr16	77420002	.	T	TAAAAA	0	PASS	DP=27;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:3,2:8,3
+chr16	78301290	.	T	C	0	PASS	DP=62;GPV=1;SPV=2.6735e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:9,8:11,8
+chr16	79655414	.	T	A	0	PASS	DP=38;GPV=1;SPV=0.015417;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:1,3:8,1
+chr16	79995164	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.0024526;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,7:2,4:2,3
+chr16	81191374	.	A	ATT	0	PASS	DP=42;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:1,4:11,4
+chr16	81414860	.	A	AGTGTGT	0	PASS	DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:2,2:2,3
+chr16	81568039	.	G	GTGTGT	0	PASS	DP=29;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,7:3,5:0,2
+chr16	82899775	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.087902;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:15,1:16,3
+chr16	83007824	.	C	CAA	0	PASS	DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:5,3:6,2
+chr16	83971093	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.027339;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:8,2:6,2
+chr16	84697678	.	TATATATATATATATATATATATATATATATG	T	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,3:3,1
+chr16	84787898	.	T	TA	0	PASS	DP=38;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:9,7:4,1
+chr16	85100004	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.0045922;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:11,7:6,7
+chr16	87187298	.	G	T	0	PASS	DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:9,1:6,4
+chr16	88115662	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:8,3:1,1
+chr16	88314100	.	C	G	0	PASS	DP=43;GPV=1;SPV=0.0054356;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:7,7:5,1
+chr16	88521081	.	GATTA	G	0	PASS	DP=28;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,2:4,2:0,0
+chr16	88521088	.	T	A	0	PASS	DP=28;GPV=1;SPV=0.10989;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,2:3,2:0,0
+chr16	88677238	.	A	C	0	PASS	DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:5,3:9,5
+chr16	90136987	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,4:0,0
+chr16	90209815	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:3,1:3,3
+chr17	321603	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,5:15,3:9,2
+chr17	548434	.	A	T	0	PASS	DP=57;GPV=1;SPV=0.032347;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:14,2:10,6
+chr17	643543	.	A	C	0	PASS	DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:8,1:5,3
+chr17	662873	.	C	G	0	PASS	DP=39;GPV=1;SPV=0.013487;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,6:7,5:3,1
+chr17	942786	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,3:4,1
+chr17	1164351	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:10,4:2,3
+chr17	1328160	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.011294;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:7,5:7,2
+chr17	1328161	.	G	C	0	PASS	DP=39;GPV=1;SPV=0.011088;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:7,5:8,2
+chr17	1656561	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.0092196;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:10,7:13,2
+chr17	2090184	.	A	C	0	PASS	DP=41;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:3,2:1,1:2,1
+chr17	2487323	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.00056474;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:10,6:12,5
+chr17	3327672	.	C	G	0	PASS	DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,4:5,2
+chr17	3645859	.	CA	C	0	PASS	DP=42;GPV=1;SPV=0.014023;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:11,7:4,3
+chr17	3756220	.	TG	T	0	PASS	DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:1,3:5,2
+chr17	4394807	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,2:1,1:6,1
+chr17	4570600	.	G	C	0	PASS	DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,2:3,3
+chr17	4578810	.	C	T	0	PASS	DP=68;GPV=1;SPV=7.3211e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,15:9,6:11,9
+chr17	5240636	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:3,1:4,1
+chr17	5420125	.	G	T	0	PASS	DP=61;GPV=1;SPV=6.1831e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,14:12,10:8,4
+chr17	5552084	.	CTTTTTT	C	0	PASS	DP=20;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:1,2:2,2
+chr17	6662001	.	ATATTT	A	0	PASS	DP=45;GPV=1;SPV=0.034418;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:2,3:10,3
+chr17	9106467	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,5:2,2:2,3
+chr17	9195209	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.0099416;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:0,3:9,2
+chr17	10153519	.	CA	C	0	PASS	DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:4,4:1,2
+chr17	10323784	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:1,1:3,1
+chr17	11366816	.	G	T	0	PASS	DP=65;GPV=1;SPV=0.010971;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:12,3:14,3
+chr17	11422051	.	C	T	0	PASS	DP=64;GPV=1;SPV=3.7248e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:16,20:11,12:5,8
+chr17	11762306	.	G	T	0	PASS	DP=67;GPV=1;SPV=0.019518;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:18,3:12,3
+chr17	11845265	.	TTG	T	0	PASS	DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,2:6,4
+chr17	14375018	.	T	A	0	PASS	DP=53;GPV=1;SPV=0.0031185;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:9,4:9,3
+chr17	16328600	.	ATATATATATAT	A	0	PASS	DP=20;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:0,2:0,0:0,2
+chr17	16422760	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.0017851;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:9,3:15,4
+chr17	17708429	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,4:7,3:7,1
+chr17	18492068	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.0017458;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:2,6:2,4:0,2
+chr17	18862802	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:5,2:6,4
+chr17	19565577	.	CT	C	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr17	20330767	.	A	G	0	PASS	DP=83;GPV=1;SPV=0.039686;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:8,1:21,4
+chr17	20470693	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:11,2:11,2
+chr17	20815219	.	A	ATT	0	PASS	DP=34;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:4,8:3,5:1,3
+chr17	21048746	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.00041746;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,15:1,10:9,5
+chr17	21648749	.	A	AT	0	PASS	DP=98;GPV=1;SPV=0.0028141;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:16,8:15,6
+chr17	21712856	.	C	A	0	PASS	DP=67;GPV=1;SPV=0.04855;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:16,9:13,1
+chr17	21723268	.	C	A	0	PASS	DP=87;GPV=1;SPV=0.019206;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:23,8:14,3
+chr17	21740034	.	A	G	0	PASS	DP=132;GPV=1;SPV=1.3924e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:57,18:25,11:32,7
+chr17	22198061	.	AT	A	0	PASS	DP=52;GPV=1;SPV=0.00026518;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:10,8:5,3
+chr17	22217042	.	AAACAAG	A	0	PASS	DP=44;GPV=1;SPV=0.0204;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:12,6:5,4
+chr17	22384676	.	G	T	0	PASS	DP=155;GPV=1;SPV=0.043277;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:55,14:8,1:47,13
+chr17	22391591	.	C	G	0	PASS	DP=56;GPV=1;SPV=0.024109;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:13,3:6,1
+chr17	26717800	.	C	G	0	PASS	DP=555;GPV=1;SPV=0.033702;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:261:234,27:109,14:125,13
+chr17	26722452	.	G	A	0	PASS	DP=180;GPV=1;SPV=0.011266;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:73,12:45,8:28,4
+chr17	26763941	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.015084;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,8:21,4:17,4
+chr17	26767603	.	A	C	0	PASS	DP=218;GPV=1;SPV=0.020548;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:88,18:56,14:32,4
+chr17	26951309	.	T	C	0	PASS	DP=229;GPV=1;SPV=0.014823;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:111:98,13:63,11:35,2
+chr17	26955229	.	G	A	0	PASS	DP=186;GPV=1;SPV=0.042553;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:72,17:28,4:44,13
+chr17	26959916	.	T	G	0	PASS	DP=156;GPV=1;SPV=0.03106;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:65,8:31,5:34,3
+chr17	26983562	.	G	C	0	PASS	DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:14,2:14,2
+chr17	27162354	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:5,6:2,1
+chr17	27470016	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.046386;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:11,4:12,1
+chr17	28118620	.	C	A	0	PASS	DP=65;GPV=1;SPV=9.4646e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,18:5,8:9,10
+chr17	28225289	.	T	TAA	0	PASS	DP=44;GPV=1;SPV=0.069102;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,6:13,5:5,1
+chr17	29970637	.	G	GACACACAC	0	PASS	DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:9,3:7,2
+chr17	30015759	.	CT	C	0	PASS	DP=36;GPV=1;SPV=0.025944;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,6:4,1
+chr17	31675970	.	G	C	0	PASS	DP=32;GPV=1;SPV=0.018499;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:2,2:5,3
+chr17	31675974	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.0086957;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,3:4,3
+chr17	32248071	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,5:3,1:1,4
+chr17	33464540	.	C	CTCTT	0	PASS	DP=31;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:3,1:7,3
+chr17	33634710	.	CTT	C	0	PASS	DP=43;GPV=1;SPV=0.0035698;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,7:2,6:4,1
+chr17	34120743	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.015182;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:5,1:0,4
+chr17	35437787	.	TGCTTGCA	T	0	PASS	DP=45;GPV=1;SPV=0.00068054;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,14:6,9:4,5
+chr17	36185264	.	A	G	0	PASS	DP=202;GPV=1;SPV=0.0029013;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:82,18:41,8:41,10
+chr17	36238037	.	CA	C	0	PASS	DP=122;GPV=1;SPV=0.047806;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:50,11:29,7:21,4
+chr17	36887234	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.019411;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:6,6:12,6
+chr17	36912504	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:10,2:7,2
+chr17	37022153	.	A	T	0	PASS	DP=60;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:15,6:7,2:8,4
+chr17	37766921	.	TCACACACACACACA	T	0	PASS	DP=34;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:4,9:3,7:1,2
+chr17	37766937	.	A	T	0	PASS	DP=33;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,5:4,2
+chr17	38258518	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.024863;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:9,8:11,2
+chr17	38832576	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:6,4:4,5
+chr17	40275261	.	AC	A	0	PASS	DP=28;GPV=1;SPV=0.0045549;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:1,4:6,2
+chr17	40837042	.	GT	G	0	PASS	DP=20;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,7:1,5:1,2
+chr17	43569855	.	T	TTTTCTTTCTTTCTTTCTTTC	0	PASS	DP=30;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,4:0,2:7,2
+chr17	45609919	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.04235;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:10,3:18,6
+chr17	45625576	.	T	TC	0	PASS	DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,1:10,4
+chr17	46495135	.	A	G	0	PASS	DP=72;GPV=1;SPV=0.04252;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:7,1:17,7
+chr17	46844305	.	C	CTT	0	PASS	DP=22;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:1,5:1,3:0,2
+chr17	49173863	.	TGAGCTTTATG	T	0	PASS	DP=38;GPV=1;SPV=0.0011868;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:5,5:2,6
+chr17	49232226	.	G	GA	0	PASS	DP=20;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,4:0,3:0,1
+chr17	50030081	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,4:3,1
+chr17	50083723	.	C	CA	0	PASS	DP=26;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:3,2:4,4
+chr17	50360571	.	C	CT	0	PASS	DP=45;GPV=1;SPV=0.016023;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,10:9,9:4,1
+chr17	50524739	.	A	T	0	PASS	DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:14,1:9,3
+chr17	51080260	.	G	C	0	PASS	DP=39;GPV=1;SPV=0.00020919;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:4,2:4,6
+chr17	52816391	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.020833;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:7,6:8,2
+chr17	53327791	.	C	A	0	PASS	DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:7,1:5,4
+chr17	54246168	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.0062691;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:3,5:10,5
+chr17	54246177	.	T	TGTG	0	PASS	DP=51;GPV=1;SPV=0.0033479;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:3,4:8,6
+chr17	54401303	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.0010255;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:15,4:10,6
+chr17	54576215	.	T	TTGTG	0	PASS	DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:5,2:8,3
+chr17	54576700	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.0035488;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:7,6:7,6
+chr17	54891017	.	A	AACACACACACACAC	0	PASS	DP=40;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:3,10:3,6:0,4
+chr17	58026563	.	T	C	0	PASS	DP=60;GPV=1;SPV=1.4524e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:11,15:4,7:7,8
+chr17	58710500	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.049766;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:5,4:4,1
+chr17	59250613	.	C	CAA	0	PASS	DP=39;GPV=1;SPV=0.019548;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,7:5,4:5,3
+chr17	60019439	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.013871;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:14,2:20,3
+chr17	60244029	.	G	GT	0	PASS	DP=20;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:2,1:3,1
+chr17	61535757	.	C	CTT	0	PASS	DP=29;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,9:1,8:2,1
+chr17	61577447	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:9,2:4,5
+chr17	62039586	.	GA	G	0	PASS	DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:6,6:1,1
+chr17	62342287	.	GT	G	0	PASS	DP=42;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,6:7,5:4,1
+chr17	65341016	.	A	AAAAAACAAAAAC	0	PASS	DP=44;GPV=1;SPV=0.031815;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:12,5:4,2
+chr17	66407338	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.00088893;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:7,6:12,6
+chr17	67329141	.	AT	A	0	PASS	DP=25;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:4,1:3,3
+chr17	68379421	.	A	ATT	0	PASS	DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr17	68499368	.	A	AAG	0	PASS	DP=28;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:2,9:0,7:2,2
+chr17	71468127	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.0067708;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:14,5:9,2
+chr17	71608301	.	C	CTATA	0	PASS	DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,1:2,3
+chr17	77048303	.	A	T	0	PASS	DP=46;GPV=1;SPV=0.0014835;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:4,2:10,6
+chr17	77647415	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.020538;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,1:6,3
+chr17	79463487	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.042892;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,3:3,1:1,2
+chr17	79463493	.	G	GCCACCT	0	PASS	DP=20;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,2:4,1:1,1
+chr17	80416714	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,2:0,1:7,1
+chr17	82122432	.	T	G	0	PASS	DP=63;GPV=1;SPV=0.030827;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:12,4:15,4
+chr17	82212393	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.036419;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,5:6,3:6,2
+chr18	113178	.	A	AAAT	0	PASS	DP=24;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:4,5:1,1
+chr18	178004	.	G	GTGTT	0	PASS	DP=60;GPV=1;SPV=0.00071601;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:7,9:7,5
+chr18	700916	.	A	G	0	PASS	DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:2,5:4,1
+chr18	889514	.	CAAAA	C	0	PASS	DP=35;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,9:7,5:3,4
+chr18	915781	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:6,4:2,3
+chr18	2384404	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,13:0,5:7,8
+chr18	2621263	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.027438;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:2,4:4,1
+chr18	2621264	.	A	AG	0	PASS	DP=34;GPV=1;SPV=0.023764;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:2,4:4,1
+chr18	3343041	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.16126;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,5:9,4:4,1
+chr18	3923133	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,8:6,7:2,1
+chr18	4066348	.	A	AAAAT	0	PASS	DP=52;GPV=1;SPV=0.0001352;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:5,4:8,5
+chr18	4548393	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:3,3:2,2
+chr18	4781352	.	CA	C	0	PASS	DP=52;GPV=1;SPV=0.0019836;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:9,11:6,9:3,2
+chr18	5324617	.	A	ACAACAT	0	PASS	DP=32;GPV=1;SPV=0.006391;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:3,3:5,2
+chr18	5949713	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.02027;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:7,3:9,4
+chr18	6446370	.	GAC	G	0	PASS	DP=34;GPV=1;SPV=0.021903;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:3,5:4,1
+chr18	7236433	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.0036999;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:4,6:1,1
+chr18	8725790	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:14:0,5:0,1:0,4
+chr18	8838752	.	C	T	0	PASS	DP=69;GPV=1;SPV=2.8089e-08;SS=2;SSC=75;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:15,20:7,8:8,12
+chr18	9480414	.	A	AT	0	PASS	DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,5:7,4
+chr18	10604917	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,4:6,4
+chr18	10757193	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:4,8:2,2
+chr18	11646123	.	T	C	0	PASS	DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:21,3:10,4
+chr18	11646124	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:21,3:12,3
+chr18	11813263	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.030289;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:2,2:5,3
+chr18	12214347	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.022419;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:13,1:9,7
+chr18	13591434	.	G	C	0	PASS	DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:13,1:15,3
+chr18	13904655	.	A	AACAGGT	0	PASS	DP=48;GPV=1;SPV=0.023962;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:11,3:6,4
+chr18	13904663	.	C	CCAAAACAGTAA	0	PASS	DP=54;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,9:11,4:8,5
+chr18	14547291	.	C	T	0	PASS	DP=72;GPV=1;SPV=0.038345;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:10,2:18,4
+chr18	15174876	.	A	T	0	PASS	DP=78;GPV=1;SPV=0.057873;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:14,2:26,3
+chr18	15371534	.	G	A	0	PASS	DP=67;GPV=1;SPV=9.1439e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:9,5:13,7
+chr18	15406854	.	C	A	0	PASS	DP=166;GPV=1;SPV=0.023607;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:72,11:50,6:22,5
+chr18	15406877	.	T	C	0	PASS	DP=197;GPV=1;SPV=0.03962;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:93,11:67,5:26,6
+chr18	15410625	.	C	T	0	PASS	DP=139;GPV=1;SPV=0.0062788;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:43,15:8,3:35,12
+chr18	15467492	.	C	T	0	PASS	DP=137;GPV=1;SPV=0.0066392;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:56,11:21,2:35,9
+chr18	15482975	.	T	A	0	PASS	DP=88;GPV=1;SPV=0.043831;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,6:7,2:26,4
+chr18	15492794	.	T	G	0	PASS	DP=150;GPV=1;SPV=0.049961;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:64,11:57,9:7,2
+chr18	15492959	.	C	G	0	PASS	DP=253;GPV=1;SPV=0.017499;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:141:123,18:68,8:55,10
+chr18	15513931	.	A	T	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:4,1:2,1
+chr18	15534382	.	G	C	0	PASS	DP=61;GPV=1;SPV=0.0053311;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:2,4:19,2
+chr18	15551751	.	T	C	0	PASS	DP=230;GPV=1;SPV=0.0022736;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:95,23:59,13:36,10
+chr18	15551816	.	C	T	0	PASS	DP=378;GPV=1;SPV=0.049575;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:180:155,25:58,21:97,4
+chr18	15585070	.	G	C	0	PASS	DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:1,3:8,2
+chr18	15625476	.	T	A	0	PASS	DP=48;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:0,0:19,4
+chr18	15654737	.	T	G	0	PASS	DP=72;GPV=1;SPV=0.04252;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:8,7:16,1
+chr18	15776941	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.035565;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:21,9:22,4
+chr18	15872075	.	T	G	0	PASS	DP=117;GPV=1;SPV=0.018432;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:50,10:10,1:40,9
+chr18	15968013	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr18	16465131	.	C	A	0	PASS	DP=142;GPV=1;SPV=0.026665;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:48,9:39,7:9,2
+chr18	16524963	.	C	G	0	PASS	DP=114;GPV=1;SPV=0.040632;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:18,7:25,5
+chr18	16645020	.	C	T	0	PASS	DP=194;GPV=1;SPV=0.022836;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:71,14:32,9:39,5
+chr18	17355884	.	A	T	0	PASS	DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:0,0:9,4
+chr18	18949466	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.060779;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:23,3:12,1
+chr18	19117525	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.032677;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:30,9:11,8:19,1
+chr18	19257442	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.0019155;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:2,2:2,3
+chr18	19288468	.	T	A	0	PASS	DP=188;GPV=1;SPV=0.040476;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:84,16:48,7:36,9
+chr18	19397234	.	A	T	0	PASS	DP=77;GPV=1;SPV=0.043004;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:3,2:31,5
+chr18	20810329	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.035721;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:6,4:0,0
+chr18	21030198	.	T	C	0	PASS	DP=61;GPV=1;SPV=2.199e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,15:10,7:5,8
+chr18	21613854	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,7:5,5:5,2
+chr18	21983286	.	C	CA	0	PASS	DP=37;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,8:4,3:7,5
+chr18	22232356	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:20,2:14,2
+chr18	22243972	.	G	A	0	PASS	DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:5,4:13,8
+chr18	23616122	.	CCGTA	C	0	PASS	DP=107;GPV=1;SPV=0.022833;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:23,7:20,4
+chr18	24748641	.	TTTCC	T	0	PASS	DP=29;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,6:0,1:6,5
+chr18	26007125	.	A	ATTTTGCTTATACTTCTCAGT	0	PASS	DP=43;GPV=1;SPV=0.026903;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:6,5:9,2
+chr18	26256819	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:2,13:0,5:2,8
+chr18	26365002	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.0060573;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:3,6:1,1
+chr18	27155104	.	AAAG	A	0	PASS	DP=38;GPV=1;SPV=0.0029007;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,3:6,3
+chr18	27219843	.	CATATATAT	C	0	PASS	DP=21;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,2:1,1:3,1
+chr18	27860667	.	CTT	C	0	PASS	DP=26;GPV=1;SPV=0.0045249;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,6:1,3:2,3
+chr18	28271054	.	G	GTTATTGTATTC	0	PASS	DP=42;GPV=1;SPV=0.017056;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,7:3,2:7,5
+chr18	28271056	.	C	A	0	PASS	DP=40;GPV=1;SPV=0.018018;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,7:3,1:6,6
+chr18	29512143	.	ATATT	A	0	PASS	DP=63;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:13,5:10,4
+chr18	29512159	.	T	TATTA	0	PASS	DP=66;GPV=1;SPV=0.021619;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:16,5:11,3
+chr18	29910419	.	A	G	0	PASS	DP=66;GPV=1;SPV=6.1797e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:7,9:9,3
+chr18	30478041	.	AGTG	A	0	PASS	DP=56;GPV=1;SPV=0.019244;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:9,3:5,3
+chr18	30854728	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.0029895;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:10,5:7,2
+chr18	31290492	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.011302;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:10,6:10,3
+chr18	32153722	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:6,4:0,0
+chr18	32904389	.	G	C	0	PASS	DP=60;GPV=1;SPV=0.017995;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:7,1:16,4
+chr18	33306606	.	T	TTA	0	PASS	DP=51;GPV=1;SPV=0.010488;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:11,4:6,8
+chr18	33926231	.	G	A	0	PASS	DP=53;GPV=1;SPV=5.0681e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,12:6,3:5,9
+chr18	36132817	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.041011;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:11,2:7,2
+chr18	36264616	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.00064637;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:8,5:8,5
+chr18	36270711	.	C	CA	0	PASS	DP=26;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,4:2,1
+chr18	37709472	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:4,1:4,3
+chr18	39135912	.	C	T	0	PASS	DP=67;GPV=1;SPV=3.6575e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:11,10:10,3
+chr18	39324724	.	C	CAT	0	PASS	DP=40;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:4,8:2,4:2,4
+chr18	39379704	.	A	T	0	PASS	DP=60;GPV=1;SPV=0.046464;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:8,1:9,3
+chr18	40557893	.	CTTT	C	0	PASS	DP=17;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:3,1:1,1
+chr18	40844667	.	G	T	0	PASS	DP=70;GPV=1;SPV=0.079534;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:28,2:10,3
+chr18	41863748	.	T	TGA	0	PASS	DP=23;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:1,6:1,5:0,1
+chr18	43949741	.	C	A	0	PASS	DP=55;GPV=1;SPV=0.00028843;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:10,4:7,6
+chr18	43970339	.	G	GT	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,2:6,2
+chr18	44214083	.	G	C	0	PASS	DP=49;GPV=1;SPV=0.0074932;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,7:9,5:3,2
+chr18	45422642	.	G	T	0	PASS	DP=49;GPV=1;SPV=0.00057266;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,2:5,4
+chr18	47076820	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:8,2:11,2
+chr18	47419530	.	T	TA	0	PASS	DP=39;GPV=1;SPV=0.0005667;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,9:4,5:6,4
+chr18	48510744	.	C	CAT	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,2:4,2
+chr18	49292592	.	GAAAAAAAAAAAAAA	G	0	PASS	DP=17;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr18	49463562	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:6,4:2,1
+chr18	49508668	.	C	CAAAA	0	PASS	DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,4:10,4:0,0
+chr18	49592974	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,1:3,5
+chr18	50180234	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.00042047;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:10,4:10,4
+chr18	50361668	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.011795;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:5,1:7,6
+chr18	50531157	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.00012397;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:5,3:9,7
+chr18	50552615	.	T	G	0	PASS	DP=57;GPV=1;SPV=0.00029607;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:10,3:9,8
+chr18	51296831	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.0016775;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:15,5:6,3
+chr18	52012995	.	A	ATGTGTGTGTGTGTGTG	0	PASS	DP=34;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,6:3,4:2,2
+chr18	52753534	.	G	A	0	PASS	DP=78;GPV=1;SPV=0.0011694;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:18,4:14,6
+chr18	53699817	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,2:5,2
+chr18	57035014	.	C	T	0	PASS	DP=61;GPV=1;SPV=5.8903e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:5,3:11,7
+chr18	57549425	.	A	T	0	PASS	DP=62;GPV=1;SPV=0.021315;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:15,6:7,3
+chr18	58920735	.	CGTGT	C	0	PASS	DP=27;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:3,4:2,2
+chr18	59390178	.	A	ATATATTATATTATAT	0	PASS	DP=25;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,4:5,2:1,2
+chr18	59882953	.	C	CATTTATTT	0	PASS	DP=47;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,8:3,4:10,4
+chr18	62581837	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:10,3:4,1
+chr18	62924678	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,3:4,1
+chr18	63839578	.	AT	A	0	PASS	DP=37;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,7:4,2:7,5
+chr18	64680435	.	A	C	0	PASS	DP=48;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:4,3:2,2:2,1
+chr18	64709340	.	T	C	0	PASS	DP=41;GPV=1;SPV=0.10773;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,3:13,2
+chr18	65283293	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:7,5:1,1:6,4
+chr18	65573943	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:7,3:9,1
+chr18	67365587	.	C	CAA	0	PASS	DP=41;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,5:6,4:2,1
+chr18	67990258	.	C	G	0	PASS	DP=57;GPV=1;SPV=0.009946;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:14,3:10,4
+chr18	68096305	.	T	TTTTC	0	PASS	DP=39;GPV=1;SPV=0.00026221;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,12:3,4:4,8
+chr18	69606759	.	T	A	0	PASS	DP=43;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,2:4,1:1,1
+chr18	70391030	.	CTTT	C	0	PASS	DP=23;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,1:3,3
+chr18	71415223	.	A	AT	0	PASS	DP=36;GPV=1;SPV=0.0060362;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:7,5:5,2
+chr18	71568521	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.031008;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:11,3:8,2
+chr18	72700416	.	C	CTCTATATA	0	PASS	DP=24;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:2,2:4,2
+chr18	73201687	.	T	TC	0	PASS	DP=23;GPV=1;SPV=0.0037594;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,8:3,4:0,4
+chr18	73206219	.	G	GACACATGC	0	PASS	DP=39;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:8,8:5,1
+chr18	74195852	.	ATATATATATGTG	A	0	PASS	DP=19;GPV=1;SPV=0.15152;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,2:0,0:3,2
+chr18	74514554	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.046146;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:7,4:3,1
+chr18	76312063	.	C	T	0	PASS	DP=67;GPV=1;SPV=3.4018e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:6,6:11,4
+chr18	76377715	.	A	ATTTTTTT	0	PASS	DP=29;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,4:4,2
+chr18	77234747	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.00020046;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:14,8:9,2
+chr18	78513550	.	A	G	0	PASS	DP=81;GPV=1;SPV=0.0050014;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:10,1:19,5
+chr18	78695069	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:5,3:4,1:1,2
+chr18	79341508	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:4,1:3,1
+chr18	79820402	.	C	A	0	PASS	DP=59;GPV=1;SPV=5.1966e-11;SS=2;SSC=102;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:23:5,18:3,11:2,7
+chr19	161053	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:3,3:3,1
+chr19	376227	.	A	G	0	PASS	DP=66;GPV=1;SPV=3.1572e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:11,19:5,11:6,8
+chr19	513703	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chr19	844020	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.001393;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,15:10,8:7,7
+chr19	1164423	.	G	C	0	PASS	DP=21;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:1,1:4,1
+chr19	1164524	.	CAGG	C	0	PASS	DP=19;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,5:1,2:2,3
+chr19	3475636	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,4:4,1
+chr19	3651055	.	G	GTTT	0	PASS	DP=39;GPV=1;SPV=0.013514;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:12,5:3,2
+chr19	3674167	.	A	ACT	0	PASS	DP=57;GPV=1;SPV=0.0063654;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:14,5:10,3
+chr19	4753332	.	G	GA	0	PASS	DP=28;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,5:5,4:0,1
+chr19	5265174	.	G	A	0	PASS	DP=68;GPV=1;SPV=8.8195e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:5,2:7,9
+chr19	5357533	.	C	T	0	PASS	DP=56;GPV=1;SPV=2.4214e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,12:4,7:7,5
+chr19	5518389	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:11,4:10,2:1,2
+chr19	7458296	.	T	TA	0	PASS	DP=39;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:8,3:11,1
+chr19	8440982	.	GTTTTT	G	0	PASS	DP=21;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:3,3:2,1
+chr19	8720253	.	T	C	0	PASS	DP=22;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,3:1,1:5,2
+chr19	8977752	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.0041454;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:7,1:11,5
+chr19	9014031	.	G	T	0	PASS	DP=48;GPV=1;SPV=1.4124e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:4,7:5,3
+chr19	10075340	.	C	CA	0	PASS	DP=37;GPV=1;SPV=0.012138;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:4,2:5,2
+chr19	10589212	.	AT	A	0	PASS	DP=50;GPV=1;SPV=0.00011933;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:7,6:7,5
+chr19	12278316	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.00029659;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:7,4:6,5
+chr19	13416277	.	A	AT	0	PASS	DP=43;GPV=1;SPV=0.0081556;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:4,6:7,3
+chr19	13443338	.	ATTTTAT	A	0	PASS	DP=53;GPV=1;SPV=0.0042025;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:8,9:8,3
+chr19	13747881	.	G	A	0	PASS	DP=83;GPV=1;SPV=2.9635e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:15,6:14,8
+chr19	14730455	.	CCTCT	C	0	PASS	DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:5,3:12,3
+chr19	15038635	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.037847;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:13,1:9,3
+chr19	16450477	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,3:2,2
+chr19	16472433	.	T	C	0	PASS	DP=54;GPV=1;SPV=0.018925;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:8,2:9,2
+chr19	19398485	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.0015417;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:1,2:7,4
+chr19	21307163	.	A	T	0	PASS	DP=62;GPV=1;SPV=0.014432;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,6:13,5:6,1
+chr19	21611259	.	T	G	0	PASS	DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:9,1:5,7
+chr19	22445435	.	T	C	0	PASS	DP=62;GPV=1;SPV=2.454e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,18:8,8:9,10
+chr19	22448089	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:23,3:5,3
+chr19	22698657	.	CTTTTTTTTTTTTTTTT	C	0	PASS	DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:2,5:4,2
+chr19	23964406	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.015726;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:4,3:10,1
+chr19	24389137	.	C	A	0	PASS	DP=132;GPV=1;SPV=0.0064764;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:52,6:23,4:29,2
+chr19	24437013	.	A	T	0	PASS	DP=116;GPV=1;SPV=0.020145;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:44,10:31,4:13,6
+chr19	27958087	.	T	TGATA	0	PASS	DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:15,4:6,2
+chr19	29095436	.	C	T	0	PASS	DP=33;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,3:0,1:6,2
+chr19	29494823	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:5,2:0,0
+chr19	29901399	.	A	T	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr19	31009586	.	G	A	0	PASS	DP=62;GPV=1;SPV=4.7869e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,14:10,7:10,7
+chr19	32128553	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:8,1:4,3
+chr19	32318146	.	G	C	0	PASS	DP=32;GPV=1;SPV=0.0017334;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,14:6,5:3,9
+chr19	32318147	.	T	C	0	PASS	DP=29;GPV=1;SPV=0.00097094;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,12:4,5:3,7
+chr19	32351419	.	C	CTG	0	PASS	DP=24;GPV=1;SPV=0.011696;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:4,3:0,1
+chr19	32940266	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.018485;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:0,3:10,8
+chr19	33023784	.	C	CA	0	PASS	DP=20;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:4,3:1,1
+chr19	34101461	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:13,1:6,3
+chr19	36190991	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:2,5:4,1
+chr19	36268999	.	C	G	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chr19	36301999	.	C	G	0	PASS	DP=20;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,3:6,3:0,0
+chr19	37268114	.	T	A	0	PASS	DP=69;GPV=1;SPV=0.0036749;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:8,3:11,8
+chr19	37290068	.	C	G	0	PASS	DP=58;GPV=1;SPV=0.074163;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:0,0:27,4
+chr19	37493362	.	TA	T	0	PASS	DP=49;GPV=1;SPV=0.0022813;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:6,5:12,4
+chr19	38258689	.	T	G	0	PASS	DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:8,1:4,3
+chr19	38450773	.	C	CAATAAATAAATA	0	PASS	DP=51;GPV=1;SPV=0.0088972;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:7,6:4,2
+chr19	40158875	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.00069047;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:11,4:7,3
+chr19	40773433	.	CA	C	0	PASS	DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,3:1,1
+chr19	41457272	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.0066591;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:5,3:4,6
+chr19	45594061	.	AAAAT	A	0	PASS	DP=26;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,4:3,2:6,2
+chr19	46047138	.	C	A	0	PASS	DP=50;GPV=1;SPV=1.9406e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:3,5:6,4
+chr19	46877250	.	A	C	0	PASS	DP=34;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,2:1,1:4,1
+chr19	47338275	.	TA	T	0	PASS	DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:13,2:7,2
+chr19	47922878	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr19	48582961	.	T	A	0	PASS	DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:7,1:6,5
+chr19	49182090	.	ATCTG	A	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,3:5,1
+chr19	50074720	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:16,1:8,7
+chr19	50099771	.	G	A	0	PASS	DP=195;GPV=1;SPV=0.038131;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:91,13:40,5:51,8
+chr19	50528408	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.115;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:16,3:18,2
+chr19	50907404	.	CTT	C	0	PASS	DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:1,2:3,3
+chr19	51425068	.	CA	C	0	PASS	DP=18;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:2,6:1,4:1,2
+chr19	51782180	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.032881;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:7,2:10,4
+chr19	52761920	.	G	GAA	0	PASS	DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:6,4:0,0
+chr19	52954040	.	C	CAAAA	0	PASS	DP=32;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:4,9:3,1
+chr19	53286939	.	AT	A	0	PASS	DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,4:5,1
+chr19	53366094	.	G	C	0	PASS	DP=47;GPV=1;SPV=0.00012488;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:2,7:10,3
+chr19	53674343	.	T	C	0	PASS	DP=63;GPV=1;SPV=0.0010146;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:11,7:15,5
+chr19	53946591	.	T	A	0	PASS	DP=22;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:7,2:2,1:5,1
+chr19	54246406	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,2:3,1:4,1
+chr19	54986556	.	C	CTT	0	PASS	DP=41;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,7:9,5:3,2
+chr19	55409461	.	A	C	0	PASS	DP=37;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:21:0,2:0,0:0,2
+chr19	55983465	.	A	C	0	PASS	DP=31;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,2:2,1:2,1
+chr19	56962067	.	CACAGACACACAG	C	0	PASS	DP=40;GPV=1;SPV=0.0016986;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:7,8:3,3
+chr2	389235	.	A	G	0	PASS	DP=36;GPV=1;SPV=0.15966;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:17,3:9,2:8,1
+chr2	442407	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,2:5,2
+chr2	442420	.	C	CGT	0	PASS	DP=35;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,6:6,2:8,4
+chr2	570393	.	G	GAAGAAGA	0	PASS	DP=44;GPV=1;SPV=0.0038106;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:11,12:8,9:3,3
+chr2	582563	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.0032805;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,19:8,15:6,4
+chr2	582950	.	A	AGGC	0	PASS	DP=38;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:14,1:9,4
+chr2	582951	.	C	G	0	PASS	DP=45;GPV=1;SPV=0.084231;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:15,2:11,6
+chr2	1072531	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:10,4:9,4
+chr2	1139826	.	CAAAA	C	0	PASS	DP=32;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,7:6,6:2,1
+chr2	1244695	.	CAAAA	C	0	PASS	DP=39;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,8:7,7:4,1
+chr2	1255895	.	A	T	0	PASS	DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,4:6,1
+chr2	1272706	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,3:8,1
+chr2	3269281	.	G	C	0	PASS	DP=31;GPV=1;SPV=0.0040496;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:0,3:7,6
+chr2	3530806	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,7:6,2
+chr2	3590439	.	T	C	0	PASS	DP=48;GPV=1;SPV=0.0249;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:2,2:14,2
+chr2	4318394	.	G	A	0	PASS	DP=77;GPV=1;SPV=4.1953e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:16,7:11,7
+chr2	5198986	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.1463;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:19,5:12,1
+chr2	5895511	.	G	T	0	PASS	DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:13,3:21,1
+chr2	6063499	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.0022018;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:16,7:11,2
+chr2	6078180	.	G	T	0	PASS	DP=59;GPV=1;SPV=0.010614;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:18,5:9,3
+chr2	6253208	.	A	ATATATACACG	0	PASS	DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,3:6,3
+chr2	6270012	.	CAA	C	0	PASS	DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,15:8,4:5,11
+chr2	9113395	.	C	CAT	0	PASS	DP=61;GPV=1;SPV=0.069135;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,4:11,2:16,2
+chr2	9254236	.	AAT	A	0	PASS	DP=35;GPV=1;SPV=0.017292;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:7,4:7,3
+chr2	9828022	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,4:0,1:14,3
+chr2	10607750	.	T	TTTATTATTATTATTATTATTATTA	0	PASS	DP=38;GPV=1;SPV=0.061437;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:8,5:12,4
+chr2	11142713	.	A	ATT	0	PASS	DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,7:0,5:2,2
+chr2	11334510	.	CA	C	0	PASS	DP=51;GPV=1;SPV=0.014047;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,13:14,10:4,3
+chr2	11607637	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:12,3:15,1
+chr2	11814512	.	A	ATG	0	PASS	DP=65;GPV=1;SPV=0.0079023;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,12:20,10:10,2
+chr2	11902372	.	C	CTT	0	PASS	DP=33;GPV=1;SPV=0.0031331;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:4,5:3,3
+chr2	12814596	.	A	AAAAAAG	0	PASS	DP=49;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:3,9:0,4:3,5
+chr2	13826601	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.083915;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,3:14,1
+chr2	14070832	.	A	T	0	PASS	DP=64;GPV=1;SPV=0.012658;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:20,5:13,5
+chr2	14253010	.	CTGTGTGTGTGTGTGTGTG	C	0	PASS	DP=44;GPV=1;SPV=0.0040496;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,9:3,3:4,6
+chr2	14516681	.	TAAAAAAA	T	0	PASS	DP=43;GPV=1;SPV=0.018839;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,4:6,4
+chr2	14686910	.	GAC	G	0	PASS	DP=31;GPV=1;SPV=0.001935;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,11:2,8:2,3
+chr2	15857076	.	C	CAA	0	PASS	DP=56;GPV=1;SPV=0.034476;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:20,12:13,8:7,4
+chr2	16039566	.	T	TTC	0	PASS	DP=22;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,5:0,1:3,4
+chr2	16884742	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:12,1:10,3
+chr2	17018732	.	C	CAA	0	PASS	DP=57;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:12,11:7,8:5,3
+chr2	17138814	.	C	A	0	PASS	DP=55;GPV=1;SPV=0.029832;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:11,8:4,4:7,4
+chr2	17778199	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.003803;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:5,7:7,5
+chr2	18289119	.	A	AAGAGAGAGAGAGAGAGAG	0	PASS	DP=49;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:9,7:7,6:2,1
+chr2	18970585	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.0068026;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:30:4,14:2,9:2,5
+chr2	19548692	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:14,5:12,1
+chr2	20374483	.	C	CAA	0	PASS	DP=43;GPV=1;SPV=0.077118;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,13:10,10:11,3
+chr2	20710610	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:8,7:8,1
+chr2	20971929	.	C	CAAAAAAAAA	0	PASS	DP=43;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,4:16,3:5,1
+chr2	21437292	.	A	T	0	PASS	DP=81;GPV=1;SPV=0.0021615;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:16,6:18,3
+chr2	22532172	.	T	TTA	0	PASS	DP=33;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,6:3,3:5,3
+chr2	22743862	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,7:6,4:3,3
+chr2	24155524	.	TATATATA	T	0	PASS	DP=21;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,2:0,0:2,2
+chr2	24443841	.	T	C	0	PASS	DP=57;GPV=1;SPV=8.275e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:9,20:5,11:4,9
+chr2	24939079	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.2122;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:14,2:11,2
+chr2	25496842	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,10:6,6:5,4
+chr2	25672203	.	CAAAA	C	0	PASS	DP=31;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,7:2,6:5,1
+chr2	26654811	.	TGA	T	0	PASS	DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:7,1:12,4
+chr2	26906186	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.073366;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:11,5:8,3
+chr2	28076473	.	T	TTTAG	0	PASS	DP=64;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,14:13,8:11,6
+chr2	28258615	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.088235;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,4:2,1:4,3
+chr2	28373407	.	A	C	0	PASS	DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:6,3:4,5
+chr2	28541184	.	AT	A	0	PASS	DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:14,3:17,1
+chr2	29085657	.	TAAA	T	0	PASS	DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:2,3:9,2
+chr2	30319656	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.0010154;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:4,5:7,9
+chr2	31725693	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.00027662;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:15,10:17,3
+chr2	31803289	.	TAA	T	0	PASS	DP=60;GPV=1;SPV=0.0034858;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:21,19:15,16:6,3
+chr2	32555914	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.02531;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,11:13,9:3,2
+chr2	34028109	.	C	A	0	PASS	DP=86;GPV=1;SPV=0.033799;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:26,5:18,1
+chr2	34109266	.	A	T	0	PASS	DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:11,2:6,2
+chr2	34741971	.	T	TA	0	PASS	DP=57;GPV=1;SPV=0.025434;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,7:13,3:15,4
+chr2	34741975	.	A	AT	0	PASS	DP=54;GPV=1;SPV=0.026092;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,7:10,3:11,4
+chr2	35499194	.	G	A	0	PASS	DP=83;GPV=1;SPV=0.0077613;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:24,5:12,2
+chr2	36342606	.	C	CTT	0	PASS	DP=42;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,10:4,5:7,5
+chr2	36546763	.	ATTT	A	0	PASS	DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,11:1,9:6,2
+chr2	36609232	.	CAAAAAAAAAAA	C	0	PASS	DP=30;GPV=1;SPV=0.0098951;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,15:3,11:4,4
+chr2	37309848	.	A	C	0	PASS	DP=44;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:6,2:5,1:1,1
+chr2	37396940	.	T	TA	0	PASS	DP=53;GPV=1;SPV=0.011309;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,6:10,5:10,1
+chr2	39226477	.	A	T	0	PASS	DP=33;GPV=1;SPV=0.25968;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:8,3:12,1
+chr2	39686963	.	ATGTGTGTGTG	A	0	PASS	DP=32;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,6:2,5:5,1
+chr2	39721985	.	CA	C	0	PASS	DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:8,8:2,1
+chr2	39773575	.	AT	A	0	PASS	DP=47;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,5:11,3:6,2
+chr2	40252939	.	G	GTACATA	0	PASS	DP=37;GPV=1;SPV=0.011671;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:3,5:10,1
+chr2	40997315	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.069027;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,5:14,3:17,2
+chr2	41045911	.	C	CGAATGAATGAAT	0	PASS	DP=61;GPV=1;SPV=0.063369;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:11,2:20,3
+chr2	41171427	.	C	G	0	PASS	DP=66;GPV=1;SPV=0.023879;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:14,6:8,5:6,1
+chr2	42009802	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.00059684;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:19,7:12,3
+chr2	44063689	.	AT	A	0	PASS	DP=25;GPV=1;SPV=0.15826;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:11,3:6,2:5,1
+chr2	44301738	.	C	CAA	0	PASS	DP=37;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,6:10,5:1,1
+chr2	44310681	.	AGTT	A	0	PASS	DP=32;GPV=1;SPV=0.0005858;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:1,5:7,6
+chr2	44315653	.	C	CAA	0	PASS	DP=19;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,6:1,4:1,2
+chr2	44437838	.	C	CA	0	PASS	DP=37;GPV=1;SPV=0.015694;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,5:2,1
+chr2	45310277	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,2:2,2
+chr2	46340130	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.00011639;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:9,4:8,7
+chr2	46427374	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr2	48089443	.	A	C	0	PASS	DP=40;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,4:4,3:5,1
+chr2	48878004	.	A	ATTCTTTCTTTCT	0	PASS	DP=52;GPV=1;SPV=0.037594;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,4:7,2:11,2
+chr2	49309311	.	C	G	0	PASS	DP=47;GPV=1;SPV=5.6253e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:5,8:4,4
+chr2	49753142	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.0020146;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:12,3:5,5
+chr2	50596863	.	C	CTT	0	PASS	DP=23;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:0,3:4,1
+chr2	50601071	.	C	CA	0	PASS	DP=62;GPV=1;SPV=0.00034047;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:14,5:5,4
+chr2	51458304	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.0050687;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:9,4:10,5
+chr2	51924536	.	G	A	0	PASS	DP=60;GPV=1;SPV=4.0043e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,19:9,9:5,10
+chr2	53870320	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:13,3:6,6
+chr2	54682411	.	C	CTT	0	PASS	DP=27;GPV=1;SPV=0.027634;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,4:0,2:2,2
+chr2	56864191	.	G	A	0	PASS	DP=66;GPV=1;SPV=3.4255e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:13,12:4,2
+chr2	57006910	.	TATATATATATATATATAAACCTGTTATATATATAAAAC	T	0	PASS	DP=38;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:4,4:8,4
+chr2	57063466	.	A	T	0	PASS	DP=57;GPV=1;SPV=5.7929e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:5,5:6,9
+chr2	57547942	.	A	AAAAG	0	PASS	DP=29;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,5:6,4:0,1
+chr2	57732451	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:15,1:9,3
+chr2	59848883	.	CA	C	0	PASS	DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,5:4,2
+chr2	61007769	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,10:4,9:5,1
+chr2	63615727	.	T	A	0	PASS	DP=34;GPV=1;SPV=0.0017612;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:5,5:5,4
+chr2	64550677	.	GCACACACACACACACA	G	0	PASS	DP=34;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:8,5:1,2
+chr2	65552580	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:2,4:1,3:1,1
+chr2	66410622	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:15,2:9,2
+chr2	66575383	.	CTCTG	C	0	PASS	DP=51;GPV=1;SPV=0.01121;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:10,4:7,1
+chr2	67473955	.	CTT	C	0	PASS	DP=22;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,6:3,3:2,3
+chr2	67773641	.	C	A	0	PASS	DP=20;GPV=1;SPV=0.028846;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,5:4,1:0,4
+chr2	68802407	.	CA	C	0	PASS	DP=27;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,8:4,7:1,1
+chr2	70361237	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:4,5:3,2
+chr2	71094258	.	ATT	A	0	PASS	DP=27;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,7:5,4:1,3
+chr2	71540059	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.00063642;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:8,5:7,4
+chr2	72881088	.	AT	A	0	PASS	DP=48;GPV=1;SPV=0.0062317;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:10,6:4,2
+chr2	77526486	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.0013098;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,9:3,8:0,1
+chr2	78176814	.	G	GA	0	PASS	DP=58;GPV=1;SPV=0.00049333;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:4,6:11,4
+chr2	78289265	.	ATTTTATTATTATTATTATTTT	A	0	PASS	DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:5,3:13,4
+chr2	78400872	.	CAA	C	0	PASS	DP=28;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,8:1,7:2,1
+chr2	79072702	.	G	A	0	PASS	DP=54;GPV=1;SPV=4.6927e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,13:7,9:5,4
+chr2	79411292	.	C	G	0	PASS	DP=62;GPV=1;SPV=0.0024076;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:8,4:13,3
+chr2	79589914	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.0014731;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:9,6:6,1
+chr2	80813512	.	G	GT	0	PASS	DP=60;GPV=1;SPV=1.9105e-05;SS=2;SSC=47;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:13,13:6,5
+chr2	80953114	.	A	G	0	PASS	DP=58;GPV=1;SPV=6.2645e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:8,4:7,6
+chr2	81926246	.	G	A	0	PASS	DP=66;GPV=1;SPV=8.4415e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:12,7:5,2
+chr2	83190122	.	G	GTT	0	PASS	DP=35;GPV=1;SPV=0.0033;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:3,5:5,4
+chr2	83341502	.	T	A	0	PASS	DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:5,6:1,4
+chr2	84334411	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.0041541;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:12,5:3,3
+chr2	85000311	.	G	C	0	PASS	DP=56;GPV=1;SPV=0.00034177;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:15,19:4,11:11,8
+chr2	85041762	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.017168;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:2,3:2,1
+chr2	85408338	.	T	TCACACACACA	0	PASS	DP=40;GPV=1;SPV=0.0044859;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:4,2:5,5
+chr2	85686432	.	CA	C	0	PASS	DP=59;GPV=1;SPV=0.023721;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:10,2:14,3
+chr2	87430689	.	AAGCC	A	0	PASS	DP=147;GPV=1;SPV=0.038661;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:56,14:29,10:27,4
+chr2	87563860	.	C	G	0	PASS	DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:10,3:7,2
+chr2	87599153	.	CGTT	C	0	PASS	DP=32;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:1,3:8,3
+chr2	88044863	.	A	AT	0	PASS	DP=36;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,8:1,3:3,5
+chr2	88463363	.	G	C	0	PASS	DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr2	89094821	.	CA	C	0	PASS	DP=19;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:4,3:0,1
+chr2	89532659	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:4,3:2,4
+chr2	89540417	.	T	A	0	PASS	DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,0:8,4
+chr2	89667558	.	T	A	0	PASS	DP=126;GPV=1;SPV=0.016207;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:50,11:21,7:29,4
+chr2	89775125	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.13783;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:14,2:18,3
+chr2	90321280	.	T	C	0	PASS	DP=80;GPV=1;SPV=0.013504;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:18,1:12,4
+chr2	90336867	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:0,0:5,4
+chr2	90372920	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.0096525;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:12,9:15,5
+chr2	91442904	.	ATTTTTCCCGCCGCGGC	A	0	PASS	DP=53;GPV=1;SPV=0.01202;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:3,2:12,4
+chr2	91504286	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.003665;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:11,1:5,5
+chr2	91521743	.	T	G	0	PASS	DP=54;GPV=1;SPV=0.093588;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:16,3:10,1
+chr2	91527918	.	G	GC	0	PASS	DP=54;GPV=1;SPV=0.040114;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:10,3:10,3
+chr2	91638781	.	A	G	0	PASS	DP=103;GPV=1;SPV=0.020164;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:38,12:3,2:35,10
+chr2	91884370	.	A	C	0	PASS	DP=130;GPV=1;SPV=0.015979;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:47,13:25,10:22,3
+chr2	91892630	.	T	C	0	PASS	DP=223;GPV=1;SPV=0.027012;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:93,20:40,10:53,10
+chr2	91964214	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.044775;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:10,5:8,2
+chr2	92057665	.	G	A	0	PASS	DP=112;GPV=1;SPV=0.013788;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:47,8:26,5:21,3
+chr2	92097267	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,1:14,3
+chr2	92198924	.	G	C	0	PASS	DP=141;GPV=1;SPV=0.0079465;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:58,13:47,10:11,3
+chr2	92294266	.	G	C	0	PASS	DP=69;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:3,2:27,3
+chr2	92353052	.	G	T	0	PASS	DP=201;GPV=1;SPV=0.0084739;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:67,17:56,11:11,6
+chr2	92353193	.	T	A	0	PASS	DP=325;GPV=1;SPV=0.015908;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:136:111,25:40,8:71,17
+chr2	92353271	.	A	G	0	PASS	DP=220;GPV=1;SPV=0.014112;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:83,17:25,6:58,11
+chr2	92402812	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.044429;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:16,3:7,1
+chr2	92480710	.	G	T	0	PASS	DP=81;GPV=1;SPV=0.05493;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:5,3:31,1
+chr2	92624123	.	T	A	0	PASS	DP=512;GPV=1;SPV=0.015203;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:224:201,23:113,19:88,4
+chr2	92629390	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:0,0:29,4
+chr2	92637488	.	T	C	0	PASS	DP=89;GPV=1;SPV=0.03743;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:21,3:15,1
+chr2	92673300	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.042336;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:14,4:8,1
+chr2	92686008	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.0218;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:13,7:19,2
+chr2	92830576	.	G	T	0	PASS	DP=274;GPV=1;SPV=0.030827;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:107,24:89,20:18,4
+chr2	92864893	.	G	C	0	PASS	DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:15,4:0,0
+chr2	92912300	.	C	G	0	PASS	DP=115;GPV=1;SPV=0.044421;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:45,7:36,6:9,1
+chr2	93006447	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:14,1:16,3
+chr2	93009734	.	A	T	0	PASS	DP=45;GPV=1;SPV=0.042059;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:11,6:3,1
+chr2	93026707	.	A	C	0	PASS	DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,0:8,4
+chr2	93138864	.	T	A	0	PASS	DP=124;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:13,1:38,5
+chr2	93312713	.	C	A	0	PASS	DP=106;GPV=1;SPV=0.012965;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:34,12:3,2
+chr2	93395646	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr2	93473993	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.046916;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:0,0:28,4
+chr2	93510620	.	T	A	0	PASS	DP=135;GPV=1;SPV=0.041814;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:55,15:36,3:19,12
+chr2	93678439	.	T	C	0	PASS	DP=93;GPV=1;SPV=0.045658;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,10:24,8:14,2
+chr2	93700638	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.0023241;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:12,7:4,3
+chr2	93996189	.	C	G	0	PASS	DP=36;GPV=1;SPV=0.030897;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,3:6,1
+chr2	94143190	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.012732;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:9,2:9,5
+chr2	94271787	.	T	G	0	PASS	DP=181;GPV=1;SPV=0.00074329;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:68,22:39,17:29,5
+chr2	94743299	.	C	T	0	PASS	DP=54;GPV=1;SPV=1.4739e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:4,2:7,8
+chr2	97250532	.	AG	A	0	PASS	DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:3,1:9,3
+chr2	97260377	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,1:6,4
+chr2	100552186	.	G	T	0	PASS	DP=30;GPV=1;SPV=0.001548;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:3,10:0,4:3,6
+chr2	101530358	.	CATATATACCCATACATATATACACATACAT	C	0	PASS	DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,2:5,2
+chr2	102563794	.	TGA	T	0	PASS	DP=38;GPV=1;SPV=0.0023462;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:2,4:5,5
+chr2	103963608	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:4,4:2,1
+chr2	104278393	.	G	A	0	PASS	DP=65;GPV=1;SPV=8.9498e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:11,7:8,8
+chr2	105562853	.	C	CAA	0	PASS	DP=27;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:5,5:1,2
+chr2	106422542	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.0092954;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:13,5:8,2
+chr2	106467439	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.02609;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:3,1:6,3
+chr2	107447361	.	A	C	0	PASS	DP=40;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:1,2:1,1:0,1
+chr2	107852252	.	A	C	0	PASS	DP=38;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,2:2,1:1,1
+chr2	108275816	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.012719;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:7,3:3,3
+chr2	108508724	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.042059;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:10,4:4,3
+chr2	110361374	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.046858;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:8,4:16,2
+chr2	110623400	.	C	A	0	PASS	DP=84;GPV=1;SPV=0.027025;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:15,3:14,8
+chr2	111180004	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:4,3:3,1
+chr2	111613863	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,2:7,2
+chr2	112184685	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:4,3:12,1
+chr2	114364103	.	C	A	0	PASS	DP=47;GPV=1;SPV=0.00048241;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,13:9,7:7,6
+chr2	114396545	.	TTTC	T	0	PASS	DP=28;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:4,1:6,3
+chr2	115391550	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.065377;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:10,3:16,2
+chr2	115698085	.	G	A	0	PASS	DP=57;GPV=1;SPV=6.1268e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:10,6:8,8
+chr2	116917336	.	A	T	0	PASS	DP=49;GPV=1;SPV=0.0081305;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:7,3:8,2
+chr2	118188323	.	G	GCACACACA	0	PASS	DP=35;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,7:5,4:0,3
+chr2	118302808	.	ATATATG	A	0	PASS	DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:5,3:13,1
+chr2	118964887	.	C	CAA	0	PASS	DP=40;GPV=1;SPV=0.04394;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:4,4:4,1
+chr2	119557958	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:5,7:0,2
+chr2	121122457	.	C	CT	0	PASS	DP=48;GPV=1;SPV=0.010459;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:10,5:9,2
+chr2	121706815	.	CA	C	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:6,3:1,1
+chr2	122421266	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.00019952;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:10,5:9,7
+chr2	122432981	.	G	GTGTGTGTGTGTC	0	PASS	DP=50;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,8:9,5:7,3
+chr2	126407992	.	G	C	0	PASS	DP=30;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,8:7,7:1,1
+chr2	126677527	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.0094148;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:9,7:2,3
+chr2	127829056	.	G	A	0	PASS	DP=68;GPV=1;SPV=2.7627e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,16:13,8:6,8
+chr2	128268025	.	G	GT	0	PASS	DP=65;GPV=1;SPV=0.047789;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:8,2:18,4
+chr2	128511430	.	G	A	0	PASS	DP=54;GPV=1;SPV=8.9236e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:12,18:6,6:6,12
+chr2	130590444	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,5:2,1
+chr2	130627652	.	C	G	0	PASS	DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:9,3:11,1
+chr2	130896509	.	G	A	0	PASS	DP=59;GPV=1;SPV=3.3518e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:9,8:2,6
+chr2	131174999	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:6,3:14,1
+chr2	131776392	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.072031;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:12,3:21,1
+chr2	131895749	.	G	C	0	PASS	DP=55;GPV=1;SPV=0.0040793;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:28:0,6:0,4:0,2
+chr2	132048949	.	GTTTCTTTCTTTCTTTC	G	0	PASS	DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:7,2:7,2
+chr2	132100118	.	G	T	0	PASS	DP=62;GPV=1;SPV=0.03112;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:11,3:16,2
+chr2	132221353	.	A	C	0	PASS	DP=27;GPV=1;SPV=0.15556;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:12,3:7,1:5,2
+chr2	132363166	.	G	A	0	PASS	DP=193;GPV=1;SPV=0.0023838;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:81,15:32,7:49,8
+chr2	132925561	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:8,7:1,1
+chr2	133139482	.	G	T	0	PASS	DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,3:14,1
+chr2	133461101	.	A	G	0	PASS	DP=46;GPV=1;SPV=3.4067e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,14:5,4:4,10
+chr2	134381383	.	T	A	0	PASS	DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:10,2:10,2
+chr2	135496384	.	TA	T	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:6,3:5,1
+chr2	136689368	.	AAT	A	0	PASS	DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:21,3:9,1
+chr2	137566490	.	A	G	0	PASS	DP=55;GPV=1;SPV=1.7548e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,17:8,10:5,7
+chr2	138807016	.	T	TATTATTGA	0	PASS	DP=54;GPV=1;SPV=9.3853e-06;SS=2;SSC=50;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:7,11:6,2
+chr2	139150839	.	G	GGAGA	0	PASS	DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:10,4:0,0
+chr2	139366710	.	A	G	0	PASS	DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:6,5:6,4
+chr2	140228126	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.0075865;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:6,2:5,3
+chr2	140228127	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.047794;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,3:5,2:5,1
+chr2	140303012	.	C	CAT	0	PASS	DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:5,6:0,2
+chr2	142411798	.	ATATATG	A	0	PASS	DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,1:7,3
+chr2	143166001	.	A	AGAAAGAAAGAAGGAAG	0	PASS	DP=29;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,4:3,3:4,1
+chr2	143270022	.	G	T	0	PASS	DP=65;GPV=1;SPV=3.5037e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:11,5:8,7
+chr2	143421802	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,4:3,2:6,2
+chr2	143430177	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.0006993;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:1,8:0,3:1,5
+chr2	143861440	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.079204;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:16,3:11,3
+chr2	144522848	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.0037466;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:13,3:4,2
+chr2	148308484	.	GTTCT	G	0	PASS	DP=27;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:6,5:6,2
+chr2	148345476	.	T	TAC	0	PASS	DP=39;GPV=1;SPV=0.023109;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:4,3:3,1
+chr2	148816631	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.025076;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:13,2:7,3
+chr2	149328067	.	CAAA	C	0	PASS	DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:3,4:1,1
+chr2	150278593	.	A	C	0	PASS	DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:1,2:0,1:1,1
+chr2	151113079	.	CA	C	0	PASS	DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:12,2:12,2
+chr2	151498891	.	T	TAAAA	0	PASS	DP=54;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:7,7:12,6
+chr2	152146271	.	C	CA	0	PASS	DP=30;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,5:2,1
+chr2	153357566	.	G	C	0	PASS	DP=56;GPV=1;SPV=9.5438e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,15:10,10:5,5
+chr2	155917648	.	G	T	0	PASS	DP=59;GPV=1;SPV=0.0030549;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,11:16,5:10,6
+chr2	156917624	.	C	A	0	PASS	DP=52;GPV=1;SPV=0.077483;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:13,3:14,2
+chr2	157442473	.	A	C	0	PASS	DP=54;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:24:0,2:0,1:0,1
+chr2	157500730	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.12981;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,5:5,4:6,1
+chr2	160349553	.	A	AAG	0	PASS	DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,5:3,1
+chr2	161109807	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:14,2:20,2
+chr2	163323047	.	GT	G	0	PASS	DP=37;GPV=1;SPV=0.0023627;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:5,7:7,2
+chr2	163518074	.	A	C	0	PASS	DP=43;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:23:1,3:1,1:0,2
+chr2	163994673	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:2,2:1,3
+chr2	165735010	.	C	G	0	PASS	DP=29;GPV=1;SPV=0.0019452;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,3:3,3
+chr2	165788466	.	GGTGT	G	0	PASS	DP=36;GPV=1;SPV=0.024328;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,4:4,2
+chr2	166287394	.	TA	T	0	PASS	DP=56;GPV=1;SPV=0.0061831;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:10,3:5,8
+chr2	167492810	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:8,5:11,4
+chr2	167899291	.	C	CAAAA	0	PASS	DP=44;GPV=1;SPV=0.023173;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:10,3:1,1
+chr2	168004732	.	CA	C	0	PASS	DP=36;GPV=1;SPV=0.0038917;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:4,8:3,1
+chr2	169099120	.	A	G	0	PASS	DP=54;GPV=1;SPV=3.3787e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:6,9:9,4
+chr2	169826106	.	C	CAAAA	0	PASS	DP=25;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:6,4:6,1
+chr2	171477453	.	A	ATT	0	PASS	DP=70;GPV=1;SPV=0.0040779;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,10:8,8:14,2
+chr2	174807446	.	CTGTGTGTG	C	0	PASS	DP=43;GPV=1;SPV=0.049486;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,3:5,2
+chr2	179521353	.	G	GTTT	0	PASS	DP=27;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,6:3,4:3,2
+chr2	180451237	.	AT	A	0	PASS	DP=66;GPV=1;SPV=3.9986e-05;SS=2;SSC=43;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:10,5:7,5
+chr2	181490456	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:23:0,2:0,0:0,2
+chr2	183029460	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:14,2:6,2
+chr2	183454423	.	G	A	0	PASS	DP=66;GPV=1;SPV=6.0898e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:8,7:10,7
+chr2	184798006	.	A	ATG	0	PASS	DP=39;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,6:6,4:6,2
+chr2	185010375	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.011595;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:8,2:12,3
+chr2	185865358	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,4:13,1
+chr2	185865552	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.0063654;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:10,5:14,3
+chr2	188055136	.	C	CAA	0	PASS	DP=39;GPV=1;SPV=0.031681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:10,9:4,2
+chr2	188093579	.	A	G	0	PASS	DP=59;GPV=1;SPV=3.1777e-10;SS=2;SSC=94;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:7,20:3,6:4,14
+chr2	188333244	.	T	TA	0	PASS	DP=48;GPV=1;SPV=0.0065287;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:9,5:9,2
+chr2	188353549	.	C	A	0	PASS	DP=58;GPV=1;SPV=0.00081536;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:8,4:8,3
+chr2	190040492	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.0060836;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:10,1:15,6
+chr2	191383494	.	G	GTATATA	0	PASS	DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:4,3:1,1
+chr2	191517028	.	G	C	0	PASS	DP=66;GPV=1;SPV=0.00054114;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:6,5:14,3
+chr2	192882338	.	C	A	0	PASS	DP=63;GPV=1;SPV=8.8646e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:13,8:8,5
+chr2	194369635	.	C	CTATATATA	0	PASS	DP=26;GPV=1;SPV=0.00029138;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:0,7:0,6:0,1
+chr2	196622718	.	G	C	0	PASS	DP=75;GPV=1;SPV=4.7298e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:8,9:9,5
+chr2	197440209	.	A	ATGTG	0	PASS	DP=36;GPV=1;SPV=0.0036697;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:3,5:3,3
+chr2	199788419	.	G	A	0	PASS	DP=67;GPV=1;SPV=1.6711e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:10,6:7,5
+chr2	201805450	.	C	CA	0	PASS	DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,4:6,4:0,0
+chr2	201947222	.	G	GTT	0	PASS	DP=42;GPV=1;SPV=0.012719;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:8,5:1,2
+chr2	201959350	.	C	CCACA	0	PASS	DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:9,6:5,4
+chr2	201962210	.	CAA	C	0	PASS	DP=19;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:3,4:0,0
+chr2	204986101	.	C	CA	0	PASS	DP=32;GPV=1;SPV=0.0014993;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,8:6,7:1,1
+chr2	205842354	.	CTCTTT	C	0	PASS	DP=20;GPV=1;SPV=0.003612;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:0,1:3,4
+chr2	205912237	.	A	AGATGGATG	0	PASS	DP=48;GPV=1;SPV=9.294e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:1,2:5,8
+chr2	208772093	.	C	CTTT	0	PASS	DP=24;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:0,7:0,5:0,2
+chr2	213276117	.	T	C	0	PASS	DP=56;GPV=1;SPV=1.2748e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:9,20:5,10:4,10
+chr2	213643067	.	A	G	0	PASS	DP=28;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,2:0,1:2,1
+chr2	213852516	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.0016986;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:11,6:6,2
+chr2	213876321	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,3:1,1:5,2
+chr2	215677637	.	AC	A	0	PASS	DP=25;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,5:2,3:3,2
+chr2	216577470	.	TTC	T	0	PASS	DP=39;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:5,5:5,3
+chr2	219934644	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:4,1:6,3
+chr2	220020588	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:9,2:9,2
+chr2	220861515	.	GCACA	G	0	PASS	DP=43;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,8:8,6:1,2
+chr2	223931690	.	T	C	0	PASS	DP=48;GPV=1;SPV=0.044913;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:12,2:2,4
+chr2	224137290	.	ATGCC	A	0	PASS	DP=46;GPV=1;SPV=0.0050177;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:11,3:6,5
+chr2	225181939	.	T	A	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:2,1:4,1
+chr2	226214446	.	C	CTG	0	PASS	DP=48;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:9,12:5,8:4,4
+chr2	227073870	.	C	T	0	PASS	DP=66;GPV=1;SPV=4.6376e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:8,8:8,9
+chr2	227728521	.	C	A	0	PASS	DP=49;GPV=1;SPV=0.002854;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:8,4:8,3
+chr2	228955072	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.0038981;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:11,2:5,5
+chr2	229125972	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:16,2:14,2
+chr2	229904416	.	C	CA	0	PASS	DP=27;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:7,1:1,3
+chr2	231829139	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:6,3:0,0
+chr2	231838616	.	G	C	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,1:0,1
+chr2	231842471	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.03845;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:1,0:18,4
+chr2	232438095	.	T	TA	0	PASS	DP=57;GPV=1;SPV=0.00077529;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:9,6:10,9
+chr2	232836391	.	T	TATAA	0	PASS	DP=22;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:3,4:0,1
+chr2	233562326	.	C	A	0	PASS	DP=61;GPV=1;SPV=0.046858;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:14,5:10,1
+chr2	233597605	.	T	A	0	PASS	DP=69;GPV=1;SPV=0.00021015;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:9,5:17,8
+chr2	234183880	.	AAG	A	0	PASS	DP=34;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,6:6,4:0,2
+chr2	235032595	.	G	C	0	PASS	DP=73;GPV=1;SPV=4.0078e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:16,18:7,6:9,12
+chr2	235878221	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.0022131;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:13,2:9,4
+chr2	236120317	.	C	T	0	PASS	DP=61;GPV=1;SPV=5.5438e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:6,6:8,6
+chr2	237771302	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,8:7,7:4,1
+chr2	238110240	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.033846;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,5:9,2:12,3
+chr2	238745493	.	GCAGTGAGGAACC	G	0	PASS	DP=53;GPV=1;SPV=2.0845e-05;SS=2;SSC=46;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:4,5:6,4
+chr2	239121000	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:5,9:3,2
+chr2	239865914	.	CACACAGAT	C	0	PASS	DP=42;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,4:7,1:13,3
+chr2	241993180	.	T	C	0	PASS	DP=43;GPV=1;SPV=0.00011443;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,11:3,8:3,3
+chr2	241993185	.	T	C	0	PASS	DP=44;GPV=1;SPV=0.00020869;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:3,8:4,3
+chr2	242088472	.	C	G	0	PASS	DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:8,3:10,1
+chr2	242183069	.	C	G	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr20	1504776	.	C	CGTGTGTGT	0	PASS	DP=42;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,7:11,5:7,2
+chr20	5026045	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:4,6:3,2
+chr20	6109902	.	C	CAA	0	PASS	DP=39;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:6,10:3,8:3,2
+chr20	7194105	.	A	T	0	PASS	DP=56;GPV=1;SPV=1.0613e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:8,8:6,5
+chr20	7273506	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.0010258;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:7,6:9,4
+chr20	7647654	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.0011821;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:17,5:8,6
+chr20	7773988	.	AT	A	0	PASS	DP=44;GPV=1;SPV=0.025088;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:13,4:6,2
+chr20	7909383	.	A	ATG	0	PASS	DP=31;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:7,4:1,1
+chr20	8744616	.	T	TAAATA	0	PASS	DP=32;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,6:5,1:2,5
+chr20	9824389	.	TA	T	0	PASS	DP=54;GPV=1;SPV=0.0015015;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:9,4:9,4
+chr20	10028303	.	A	C	0	PASS	DP=40;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,4:10,2:7,2
+chr20	11374566	.	TTA	T	0	PASS	DP=42;GPV=1;SPV=0.042738;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:9,2:4,3
+chr20	11769171	.	CTT	C	0	PASS	DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,6:3,3:0,3
+chr20	13305200	.	A	T	0	PASS	DP=52;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:6,2:6,1:0,1
+chr20	14095330	.	G	A	0	PASS	DP=60;GPV=1;SPV=8.3837e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,14:7,11:9,3
+chr20	14130552	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:10,7:8,3
+chr20	14176992	.	A	AG	0	PASS	DP=51;GPV=1;SPV=0.01551;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,3:6,1
+chr20	14222821	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.0021008;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:1,4:1,4:0,0
+chr20	17161170	.	CA	C	0	PASS	DP=36;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:7,7:7,2
+chr20	19024244	.	A	AAAAG	0	PASS	DP=27;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,4:2,3:3,1
+chr20	19920825	.	AC	A	0	PASS	DP=53;GPV=1;SPV=8.5276e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:7,6:4,2
+chr20	19923129	.	G	A	0	PASS	DP=76;GPV=1;SPV=3.4821e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:23,16:16,10:7,6
+chr20	19958531	.	G	T	0	PASS	DP=51;GPV=1;SPV=0.0001635;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,3:7,6
+chr20	21166148	.	A	AT	0	PASS	DP=42;GPV=1;SPV=0.0057786;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:2,6:9,5
+chr20	21721607	.	CATAT	C	0	PASS	DP=20;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:2,4:1,1
+chr20	22082360	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:2,3:12,2
+chr20	22743815	.	A	T	0	PASS	DP=47;GPV=1;SPV=0.032371;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:12,4:4,2
+chr20	23277049	.	G	GCACACACACA	0	PASS	DP=44;GPV=1;SPV=0.004671;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:8,4:5,5
+chr20	23864601	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.0311;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:16,3:9,2
+chr20	24432255	.	A	C	0	PASS	DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:4,5:3,3
+chr20	25427869	.	A	AT	0	PASS	DP=38;GPV=1;SPV=0.0045922;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:3,4:5,5
+chr20	26450344	.	C	A	0	PASS	DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:14,3:1,1
+chr20	26483655	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.0066919;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:9,4:10,8
+chr20	26489609	.	A	T	0	PASS	DP=292;GPV=1;SPV=0.042754;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:135:112,23:93,21:19,2
+chr20	26523728	.	G	A	0	PASS	DP=141;GPV=1;SPV=0.040347;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:65,9:0,1:65,8
+chr20	26523764	.	A	T	0	PASS	DP=115;GPV=1;SPV=0.028719;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:50,7:0,2:50,5
+chr20	26523770	.	AC	A	0	PASS	DP=110;GPV=1;SPV=0.018897;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:52,6:1,1:51,5
+chr20	27161450	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:8,1:20,3
+chr20	28178113	.	G	T	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr20	28613576	.	T	A	0	PASS	DP=135;GPV=1;SPV=0.029814;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:50,7:23,4:27,3
+chr20	28624728	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.032947;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:18,4:25,1
+chr20	28804568	.	A	G	0	PASS	DP=174;GPV=1;SPV=0.022182;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:65,15:43,13:22,2
+chr20	28808514	.	T	C	0	PASS	DP=195;GPV=1;SPV=0.029038;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:80,11:33,7:47,4
+chr20	28819540	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:12,1:8,3
+chr20	28823977	.	A	G	0	PASS	DP=131;GPV=1;SPV=0.035515;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:52,15:27,10:25,5
+chr20	28868737	.	T	G	0	PASS	DP=320;GPV=1;SPV=0.04665;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:167:143,24:99,21:44,3
+chr20	28900698	.	A	T	0	PASS	DP=188;GPV=1;SPV=0.017497;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:84,12:50,8:34,4
+chr20	28910124	.	A	G	0	PASS	DP=246;GPV=1;SPV=0.044993;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:89,19:53,17:36,2
+chr20	28946744	.	G	A	0	PASS	DP=121;GPV=1;SPV=0.028607;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:52,9:31,5:21,4
+chr20	28956255	.	C	A	0	PASS	DP=178;GPV=1;SPV=0.025065;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:66,16:32,9:34,7
+chr20	29058370	.	TC	T	0	PASS	DP=172;GPV=1;SPV=0.009142;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:65,20:28,12:37,8
+chr20	29072135	.	TAAAAG	T	0	PASS	DP=277;GPV=1;SPV=0.025898;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:135:116,19:52,4:64,15
+chr20	29083045	.	C	T	0	PASS	DP=199;GPV=1;SPV=0.023393;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:82,21:67,16:15,5
+chr20	29227596	.	CTGAG	C	0	PASS	DP=144;GPV=1;SPV=0.012619;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:50,14:22,8:28,6
+chr20	29227616	.	G	A	0	PASS	DP=164;GPV=1;SPV=0.016958;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:55,15:26,9:29,6
+chr20	29310538	.	CTT	C	0	PASS	DP=66;GPV=1;SPV=0.028273;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:8,2:8,2
+chr20	29330052	.	G	A	0	PASS	DP=279;GPV=1;SPV=0.027918;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:133:110,23:61,13:49,10
+chr20	29447351	.	TG	T	0	PASS	DP=61;GPV=1;SPV=0.011252;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:15,8:8,5
+chr20	29512679	.	C	T	0	PASS	DP=309;GPV=1;SPV=0.017757;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:115,23:46,8:69,15
+chr20	29521390	.	G	T	0	PASS	DP=108;GPV=1;SPV=0.014524;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:41,11:26,5:15,6
+chr20	29657971	.	T	TGAA	0	PASS	DP=48;GPV=1;SPV=0.005254;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:9,3:5,5
+chr20	29657980	.	G	GGTGT	0	PASS	DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,2:6,2
+chr20	29796452	.	C	A	0	PASS	DP=52;GPV=1;SPV=1.7307e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:7,9:7,6
+chr20	29942876	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr20	29956722	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:22,3:1,1
+chr20	30355851	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0018664;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:32,17:20,8:12,9
+chr20	30521954	.	C	T	0	PASS	DP=64;GPV=1;SPV=1.5568e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:11,17:5,11:6,6
+chr20	30558895	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.00012852;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,6:6,3
+chr20	30819569	.	G	GC	0	PASS	DP=201;GPV=1;SPV=0.049223;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:70,13:36,10:34,3
+chr20	30862731	.	G	C	0	PASS	DP=80;GPV=1;SPV=0.027838;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:10,3:17,4
+chr20	30862734	.	T	TC	0	PASS	DP=79;GPV=1;SPV=0.036975;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:9,2:16,4
+chr20	31057307	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.032208;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,12:26,10:9,2
+chr20	31059449	.	T	C	0	PASS	DP=295;GPV=1;SPV=0.019784;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:149:131,18:70,11:61,7
+chr20	31060603	.	C	T	0	PASS	DP=771;GPV=1;SPV=0.0020092;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:371:309,62:178,25:131,37
+chr20	31064183	.	T	C	0	PASS	DP=579;GPV=1;SPV=0.019464;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:260:224,36:117,14:107,22
+chr20	31068166	.	G	C	0	PASS	DP=739;GPV=1;SPV=0.007789;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:344:264,52:155,29:109,23
+chr20	31074440	.	G	T	0	PASS	DP=176;GPV=1;SPV=0.010299;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:70,13:37,10:33,3
+chr20	31187381	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:7,1:15,4
+chr20	31187382	.	A	C	0	PASS	DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:9,1:16,4
+chr20	31229983	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.13884;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:17,2:15,2
+chr20	31369385	.	G	GT	0	PASS	DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,8:7,7:2,1
+chr20	32295854	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:5,9:2,1
+chr20	32656863	.	C	CAAAAAAAAAAAAA	0	PASS	DP=46;GPV=1;SPV=0.039653;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:7,5:7,1
+chr20	32666762	.	CAA	C	0	PASS	DP=27;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:4,2:3,5
+chr20	34461711	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,2:3,1:2,1
+chr20	34691039	.	C	CT	0	PASS	DP=38;GPV=1;SPV=0.0079853;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:7,4:5,2
+chr20	36726914	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,3:3,1
+chr20	37480580	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:0,0:6,4
+chr20	38659921	.	C	G	0	PASS	DP=58;GPV=1;SPV=0.022389;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:15,1:11,5
+chr20	38906292	.	T	G	0	PASS	DP=20;GPV=1;SPV=0.001548;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,7:2,3:1,4
+chr20	39462972	.	GA	G	0	PASS	DP=46;GPV=1;SPV=0.018752;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:7,2:7,2
+chr20	39802656	.	G	A	0	PASS	DP=58;GPV=1;SPV=1.9493e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:6,4:9,8
+chr20	42312802	.	CTTT	C	0	PASS	DP=19;GPV=1;SPV=0.004816;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:3,2:0,3
+chr20	42704431	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.00039082;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:8,5:2,5
+chr20	42755572	.	AT	A	0	PASS	DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:17,2:9,4
+chr20	44764203	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,4:2,3:4,1
+chr20	46200369	.	G	T	0	PASS	DP=51;GPV=1;SPV=0.028003;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:10,3:11,2
+chr20	48153175	.	C	T	0	PASS	DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:14,7:4,5
+chr20	48520368	.	C	G	0	PASS	DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:13,1:11,4
+chr20	51130153	.	T	TAA	0	PASS	DP=43;GPV=1;SPV=0.031992;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:2,14:2,7:0,7
+chr20	52691582	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.010106;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,8:7,6:4,2
+chr20	53562726	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:6,4:3,3
+chr20	54481024	.	CATCT	C	0	PASS	DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:3,3:5,2
+chr20	55022494	.	T	TTC	0	PASS	DP=34;GPV=1;SPV=0.15152;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,2:1,1:2,1
+chr20	55304872	.	A	T	0	PASS	DP=60;GPV=1;SPV=6.2662e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:6,7:11,4
+chr20	56281649	.	T	A	0	PASS	DP=23;GPV=1;SPV=0.0079051;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,2:1,2
+chr20	57833936	.	T	G	0	PASS	DP=23;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr20	59050074	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.015231;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:5,4:10,5
+chr20	59300486	.	G	T	0	PASS	DP=85;GPV=1;SPV=0.02006;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:19,2:16,3
+chr20	59474855	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,4:3,1
+chr20	59815714	.	C	T	0	PASS	DP=91;GPV=1;SPV=0.00061565;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:16,6:22,5
+chr20	60919897	.	T	TC	0	PASS	DP=36;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:5,1:5,4
+chr20	61424818	.	A	T	0	PASS	DP=45;GPV=1;SPV=0.035975;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,1:4,3
+chr20	62070424	.	C	G	0	PASS	DP=61;GPV=1;SPV=0.00056194;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:10,1:6,6
+chr20	62322090	.	C	A	0	PASS	DP=81;GPV=1;SPV=0.017013;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:18,3:14,2
+chr20	62331213	.	C	T	0	PASS	DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:1,3:5,1
+chr20	63879699	.	A	T	0	PASS	DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr20	64173717	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:0,1:5,3
+chr21	5223281	.	G	T	0	PASS	DP=179;GPV=1;SPV=0.021828;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:74,12:33,6:41,6
+chr21	5247110	.	T	C	0	PASS	DP=174;GPV=1;SPV=0.0057805;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:51,17:20,5:31,12
+chr21	5250830	.	T	G	0	PASS	DP=132;GPV=1;SPV=0.0022313;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:46,17:22,7:24,10
+chr21	5313675	.	G	A	0	PASS	DP=99;GPV=1;SPV=0.029623;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:10,3:35,2
+chr21	6365950	.	C	T	0	PASS	DP=281;GPV=1;SPV=0.038596;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:111,16:52,8:59,8
+chr21	6371936	.	A	G	0	PASS	DP=272;GPV=1;SPV=0.0069071;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:110,20:65,6:45,14
+chr21	7314841	.	G	C	0	PASS	DP=68;GPV=1;SPV=0.018316;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:12,3:7,2
+chr21	7316307	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.065471;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:4,3:9,5
+chr21	7944360	.	G	GCCATTCAATTCCTTT	0	PASS	DP=177;GPV=1;SPV=0.039942;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:60,14:29,11:31,3
+chr21	7951615	.	ACATTC	A	0	PASS	DP=141;GPV=1;SPV=0.018574;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:58,11:24,6:34,5
+chr21	7987132	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.0047325;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,5:6,2
+chr21	8033313	.	T	A	0	PASS	DP=348;GPV=1;SPV=0.044691;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:159:143,16:49,9:94,7
+chr21	8037914	.	C	T	0	PASS	DP=147;GPV=1;SPV=0.00043659;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:48,23:37,12:11,11
+chr21	8527624	.	A	T	0	PASS	DP=208;GPV=1;SPV=0.013578;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:84,14:49,8:35,6
+chr21	8528646	.	C	T	0	PASS	DP=232;GPV=1;SPV=0.037617;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:122:103,19:52,11:51,8
+chr21	8548926	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:3,2:3,2
+chr21	8758126	.	TGATG	T	0	PASS	DP=135;GPV=1;SPV=0.028705;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:61,12:30,2:31,10
+chr21	8759880	.	C	T	0	PASS	DP=162;GPV=1;SPV=0.038112;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:61,8:34,6:27,2
+chr21	8771265	.	CT	C	0	PASS	DP=209;GPV=1;SPV=0.039069;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:90,13:46,8:44,5
+chr21	8825156	.	G	A	0	PASS	DP=164;GPV=1;SPV=0.031333;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:70,12:26,9:44,3
+chr21	8825344	.	C	T	0	PASS	DP=132;GPV=1;SPV=0.011963;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:60,15:34,9:26,6
+chr21	8863068	.	C	T	0	PASS	DP=475;GPV=1;SPV=0.042033;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:241:215,26:116,9:99,17
+chr21	8877179	.	G	GA	0	PASS	DP=483;GPV=1;SPV=0.034022;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:242:205,36:105,19:100,17
+chr21	9044754	.	T	A	0	PASS	DP=212;GPV=1;SPV=0.031633;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:94,14:50,10:44,4
+chr21	9060251	.	C	T	0	PASS	DP=180;GPV=1;SPV=0.031958;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:78,12:34,3:44,9
+chr21	9067120	.	G	C	0	PASS	DP=242;GPV=1;SPV=0.034011;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:91,17:41,3:50,14
+chr21	9089597	.	A	G	0	PASS	DP=171;GPV=1;SPV=0.028141;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:60,16:44,9:16,7
+chr21	9097650	.	C	A	0	PASS	DP=102;GPV=1;SPV=0.011943;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:47,10:35,8:12,2
+chr21	9098286	.	G	T	0	PASS	DP=199;GPV=1;SPV=0.018613;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:89,14:54,2:35,12
+chr21	9104927	.	A	AC	0	PASS	DP=226;GPV=1;SPV=0.018989;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:94,15:51,8:43,7
+chr21	9108830	.	A	C	0	PASS	DP=347;GPV=1;SPV=0.035405;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:155:139,16:60,11:79,5
+chr21	9109157	.	T	C	0	PASS	DP=288;GPV=1;SPV=0.049584;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:129:116,13:66,7:50,6
+chr21	9109513	.	A	G	0	PASS	DP=485;GPV=1;SPV=0.0049984;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:223:198,25:95,13:103,12
+chr21	9114105	.	A	T	0	PASS	DP=574;GPV=1;SPV=0.0060011;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:273:231,42:115,26:116,16
+chr21	9125433	.	G	T	0	PASS	DP=451;GPV=1;SPV=0.022258;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:182,35:101,17:81,18
+chr21	9138358	.	G	A	0	PASS	DP=418;GPV=1;SPV=0.014354;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:194:170,24:78,11:92,13
+chr21	9138911	.	G	T	0	PASS	DP=513;GPV=1;SPV=0.0048611;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:228:193,35:103,17:90,18
+chr21	9140540	.	G	A	0	PASS	DP=451;GPV=1;SPV=0.023884;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:212:183,29:87,11:96,18
+chr21	9141528	.	C	T	0	PASS	DP=435;GPV=1;SPV=0.0021362;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:221:181,40:83,20:98,20
+chr21	9143132	.	T	A	0	PASS	DP=442;GPV=1;SPV=0.03027;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:183,34:97,17:86,17
+chr21	9147618	.	C	A	0	PASS	DP=641;GPV=1;SPV=0.033085;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:291:256,35:148,13:108,22
+chr21	9158498	.	G	GA	0	PASS	DP=444;GPV=1;SPV=0.0065601;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:230:202,28:105,10:97,18
+chr21	9166301	.	C	T	0	PASS	DP=303;GPV=1;SPV=0.008751;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:146:129,17:68,8:61,9
+chr21	9166896	.	C	A	0	PASS	DP=428;GPV=1;SPV=0.0047644;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:189:169,20:89,12:80,8
+chr21	9183824	.	C	T	0	PASS	DP=326;GPV=1;SPV=7.1277e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:150:130,20:66,11:64,9
+chr21	9186372	.	T	C	0	PASS	DP=357;GPV=1;SPV=0.035248;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:141,25:74,14:67,11
+chr21	9248472	.	A	G	0	PASS	DP=214;GPV=1;SPV=0.0098761;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:87,13:43,9:44,4
+chr21	9252637	.	T	G	0	PASS	DP=554;GPV=1;SPV=0.0015313;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:277:244,33:101,14:143,19
+chr21	9254213	.	C	G	0	PASS	DP=164;GPV=1;SPV=0.0079825;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:62,21:3,14:59,7
+chr21	9256336	.	C	T	0	PASS	DP=718;GPV=1;SPV=0.013224;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:351:303,44:171,26:132,18
+chr21	9256341	.	A	C	0	PASS	DP=685;GPV=1;SPV=0.011669;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:338:294,44:174,12:120,32
+chr21	9274592	.	C	T	0	PASS	DP=383;GPV=1;SPV=0.045665;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:196:170,26:105,19:65,7
+chr21	9299283	.	C	T	0	PASS	DP=354;GPV=1;SPV=0.038165;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:183:156,27:66,13:90,14
+chr21	9305926	.	G	T	0	PASS	DP=342;GPV=1;SPV=0.020347;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:161:134,27:57,8:77,19
+chr21	9326950	.	C	A	0	PASS	DP=446;GPV=1;SPV=0.045654;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:226:194,32:84,13:110,19
+chr21	9328944	.	G	A	0	PASS	DP=630;GPV=1;SPV=0.015144;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:329:291,38:148,20:143,18
+chr21	9329037	.	AG	A	0	PASS	DP=631;GPV=1;SPV=0.040879;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:306:270,36:128,15:142,21
+chr21	9329691	.	C	T	0	PASS	DP=373;GPV=1;SPV=0.025244;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:192:158,28:74,16:84,12
+chr21	9331823	.	G	A	0	PASS	DP=418;GPV=1;SPV=0.0054958;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:210:172,38:88,14:84,24
+chr21	9334167	.	T	A	0	PASS	DP=329;GPV=1;SPV=0.013871;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:135,21:79,11:56,10
+chr21	9337628	.	TG	T	0	PASS	DP=380;GPV=1;SPV=0.0087426;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:174:153,21:83,8:70,13
+chr21	9347197	.	G	C	0	PASS	DP=373;GPV=1;SPV=0.013814;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:180:161,19:77,12:84,7
+chr21	9347982	.	C	T	0	PASS	DP=368;GPV=1;SPV=0.0052863;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:163:142,21:76,13:66,8
+chr21	9353281	.	G	A	0	PASS	DP=377;GPV=1;SPV=0.019565;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:191:167,24:80,14:87,10
+chr21	9368462	.	C	G	0	PASS	DP=694;GPV=1;SPV=0.001108;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:317:280,37:144,21:136,16
+chr21	9552040	.	T	TTC	0	PASS	DP=119;GPV=1;SPV=0.0053894;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:44,15:13,6:31,9
+chr21	9574912	.	G	A	0	PASS	DP=249;GPV=1;SPV=0.028127;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:94,19:42,13:52,6
+chr21	9620953	.	A	T	0	PASS	DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:3,2:5,5
+chr21	9639066	.	G	C	0	PASS	DP=146;GPV=1;SPV=0.005646;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:20,6:28,7
+chr21	9644737	.	C	T	0	PASS	DP=153;GPV=1;SPV=0.049145;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:61,15:26,9:35,6
+chr21	9678565	.	G	T	0	PASS	DP=158;GPV=1;SPV=0.012575;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:53,16:20,14:33,2
+chr21	9694517	.	A	G	0	PASS	DP=168;GPV=1;SPV=0.028118;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:71,12:42,5:29,7
+chr21	9711556	.	T	G	0	PASS	DP=146;GPV=1;SPV=0.010944;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:54,18:30,11:24,7
+chr21	9827735	.	C	CAT	0	PASS	DP=153;GPV=1;SPV=0.014449;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:67,11:47,6:20,5
+chr21	9827822	.	G	A	0	PASS	DP=124;GPV=1;SPV=0.0068055;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:34,6:10,5
+chr21	9979543	.	C	A	0	PASS	DP=122;GPV=1;SPV=0.023385;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:49,15:27,8:22,7
+chr21	9981274	.	TTCTC	T	0	PASS	DP=74;GPV=1;SPV=0.02706;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:19,3:13,2
+chr21	10036655	.	A	G	0	PASS	DP=149;GPV=1;SPV=0.047815;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:63,15:35,7:28,8
+chr21	10040830	.	A	AT	0	PASS	DP=117;GPV=1;SPV=0.0044758;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:47,16:22,7:25,9
+chr21	10040832	.	A	T	0	PASS	DP=111;GPV=1;SPV=0.0036917;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:33,18:16,8:17,10
+chr21	10124321	.	C	T	0	PASS	DP=110;GPV=1;SPV=0.0029053;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:37,17:23,8:14,9
+chr21	10164711	.	T	A	0	PASS	DP=144;GPV=1;SPV=0.00069468;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:58,22:29,11:29,11
+chr21	10168682	.	T	G	0	PASS	DP=107;GPV=1;SPV=0.043117;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:45,6:15,3:30,3
+chr21	10271285	.	A	T	0	PASS	DP=26;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:12,3:6,2:6,1
+chr21	10330122	.	T	C	0	PASS	DP=298;GPV=1;SPV=0.021272;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:137:118,19:68,10:50,9
+chr21	10330762	.	T	A	0	PASS	DP=292;GPV=1;SPV=0.03222;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:136:120,16:56,8:64,8
+chr21	10333904	.	C	T	0	PASS	DP=264;GPV=1;SPV=0.045039;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:106,12:41,6:65,6
+chr21	10342450	.	G	A	0	PASS	DP=416;GPV=1;SPV=0.0081112;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:194,23:97,12:97,11
+chr21	10344221	.	C	CA	0	PASS	DP=250;GPV=1;SPV=0.023036;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:94,23:58,18:36,5
+chr21	10350705	.	G	GC	0	PASS	DP=297;GPV=1;SPV=0.023804;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:137:117,20:50,8:67,12
+chr21	10357137	.	A	T	0	PASS	DP=303;GPV=1;SPV=0.011177;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:143:123,20:56,16:67,4
+chr21	10361539	.	T	A	0	PASS	DP=550;GPV=1;SPV=0.046728;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:246:220,26:118,17:102,9
+chr21	10366440	.	G	C	0	PASS	DP=277;GPV=1;SPV=0.040595;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:129:116,13:44,9:72,4
+chr21	10394018	.	G	C	0	PASS	DP=360;GPV=1;SPV=0.0077177;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:178:146,32:73,19:73,13
+chr21	10397708	.	C	A	0	PASS	DP=209;GPV=1;SPV=4.322e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:76,17:38,7:38,10
+chr21	10419634	.	G	C	0	PASS	DP=476;GPV=1;SPV=0.044991;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:197,36:90,13:107,23
+chr21	10449909	.	C	A	0	PASS	DP=276;GPV=1;SPV=0.016547;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:132:110,22:53,12:57,10
+chr21	10462375	.	A	G	0	PASS	DP=366;GPV=1;SPV=0.037829;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:169:150,19:83,11:67,8
+chr21	10462629	.	C	T	0	PASS	DP=380;GPV=1;SPV=0.0016381;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:191:171,20:83,9:88,11
+chr21	10465468	.	G	A	0	PASS	DP=421;GPV=1;SPV=0.046754;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:221:198,23:114,15:84,8
+chr21	10474414	.	C	A	0	PASS	DP=300;GPV=1;SPV=0.023699;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:137:122,15:64,12:58,3
+chr21	10482852	.	T	C	0	PASS	DP=163;GPV=1;SPV=0.031234;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:60,14:26,5:34,9
+chr21	10482853	.	C	A	0	PASS	DP=171;GPV=1;SPV=0.023558;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:63,13:27,4:36,9
+chr21	10482863	.	C	A	0	PASS	DP=155;GPV=1;SPV=0.023992;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:58,12:21,3:37,9
+chr21	10488869	.	C	T	0	PASS	DP=347;GPV=1;SPV=0.030335;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:165:147,18:74,5:73,13
+chr21	10751454	.	A	C	0	PASS	DP=248;GPV=1;SPV=0.046581;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:96,14:49,8:47,6
+chr21	10771684	.	C	T	0	PASS	DP=112;GPV=1;SPV=0.047441;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:26,4:19,5
+chr21	10807251	.	T	A	0	PASS	DP=402;GPV=1;SPV=0.015793;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:149,17:71,12:78,5
+chr21	13044380	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.015516;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:6,5:7,2
+chr21	13191770	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:9,6:9,3
+chr21	13437082	.	A	G	0	PASS	DP=63;GPV=1;SPV=0.04497;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:14,1:13,6
+chr21	16679952	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.0069146;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:7,4:6,8
+chr21	17174287	.	A	AT	0	PASS	DP=22;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:2,2:3,2
+chr21	17730218	.	C	G	0	PASS	DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:0,1:4,4
+chr21	18447439	.	C	CAAA	0	PASS	DP=32;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:4,7:4,6:0,1
+chr21	18895938	.	TA	T	0	PASS	DP=28;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,6:2,4:3,2
+chr21	20226487	.	A	C	0	PASS	DP=43;GPV=1;SPV=0.02842;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:11,4:1,1
+chr21	20522459	.	T	C	0	PASS	DP=54;GPV=1;SPV=0.00019558;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,1:5,7
+chr21	20988674	.	AAG	A	0	PASS	DP=41;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:17,2:3,2
+chr21	20988682	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:13,2:1,2
+chr21	21626186	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.019909;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:15,2:6,2
+chr21	21717527	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.011427;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:7,4:10,5
+chr21	21871317	.	G	GATTATT	0	PASS	DP=56;GPV=1;SPV=0.010144;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,13:11,7:9,6
+chr21	22534971	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:14,2:9,2
+chr21	23733973	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr21	26379249	.	G	T	0	PASS	DP=31;GPV=1;SPV=0.0043505;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:4,3:5,4
+chr21	26456629	.	C	T	0	PASS	DP=64;GPV=1;SPV=9.7241e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,15:7,7:8,8
+chr21	26708933	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.10909;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,2:0,1:2,1
+chr21	27001299	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.029816;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:9,1:12,3
+chr21	28136090	.	G	GGTGTGTGTGTGTGTGT	0	PASS	DP=39;GPV=1;SPV=0.00756;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:8,4:6,3
+chr21	28300178	.	TTATG	T	0	PASS	DP=47;GPV=1;SPV=0.021726;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:6,4:9,5
+chr21	28381248	.	G	T	0	PASS	DP=63;GPV=1;SPV=4.0536e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:6,6:7,5
+chr21	29614402	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:2,3:3,2
+chr21	30807295	.	GAA	G	0	PASS	DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:12,2:4,2
+chr21	30877015	.	T	TTTA	0	PASS	DP=57;GPV=1;SPV=0.032025;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:12,1:9,3
+chr21	31112171	.	GTA	G	0	PASS	DP=47;GPV=1;SPV=0.04242;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:10,4:7,2
+chr21	31871338	.	GTT	G	0	PASS	DP=26;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,6:2,1:4,5
+chr21	32361159	.	A	AG	0	PASS	DP=36;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,5:3,4:3,1
+chr21	33222900	.	GTTT	G	0	PASS	DP=21;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:6,3:0,1
+chr21	34239300	.	CAA	C	0	PASS	DP=27;GPV=1;SPV=0.0030029;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:1,7:0,4:1,3
+chr21	34716857	.	C	A	0	PASS	DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:2,3:5,2
+chr21	34716859	.	CTA	C	0	PASS	DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:2,3:4,3
+chr21	34716862	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:1,5:1,3:0,2
+chr21	35851420	.	T	A	0	PASS	DP=55;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:6,3:2,1:4,2
+chr21	35894301	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.0018592;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,8:7,5:3,3
+chr21	36253637	.	C	CAAA	0	PASS	DP=34;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,8:2,5:3,3
+chr21	37207080	.	A	C	0	PASS	DP=64;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:24:0,2:0,1:0,1
+chr21	37859532	.	A	T	0	PASS	DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr21	38194194	.	G	T	0	PASS	DP=49;GPV=1;SPV=7.8688e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:3,7:9,3
+chr21	38548833	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:8,4:1,2
+chr21	38793515	.	C	CTTT	0	PASS	DP=25;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:8,2:1,2
+chr21	39799261	.	C	T	0	PASS	DP=63;GPV=1;SPV=4.1561e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:11,4:5,6
+chr21	41041820	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:6,2:1,2
+chr21	41840442	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,3:1,1
+chr21	42346244	.	ATACACACACCCATACATGGG	A	0	PASS	DP=69;GPV=1;SPV=0.037555;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:16,2:10,6
+chr21	43704220	.	C	CAAAAAA	0	PASS	DP=27;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:10,4:1,0
+chr21	44925422	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,3:3,2:0,1
+chr22	10637080	.	G	A	0	PASS	DP=118;GPV=1;SPV=0.010072;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:41,16:8,3:33,13
+chr22	10641564	.	G	GAA	0	PASS	DP=60;GPV=1;SPV=0.021777;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:10,5:8,4
+chr22	10641581	.	TGA	T	0	PASS	DP=59;GPV=1;SPV=0.010612;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:7,4:13,1
+chr22	10692496	.	G	A	0	PASS	DP=237;GPV=1;SPV=0.022732;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:92,21:37,8:55,13
+chr22	10704261	.	A	AAT	0	PASS	DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,3:4,1
+chr22	10704718	.	GTA	G	0	PASS	DP=39;GPV=1;SPV=0.011954;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:11,4:5,4
+chr22	10704757	.	TAG	T	0	PASS	DP=39;GPV=1;SPV=0.014881;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:7,2:6,3
+chr22	10725297	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.036569;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:13,3:15,6
+chr22	10733494	.	C	T	0	PASS	DP=654;GPV=1;SPV=0.0082194;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:310:269,41:128,23:141,18
+chr22	10738815	.	T	TTTATTTAAC	0	PASS	DP=301;GPV=1;SPV=0.035028;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:146:45,11:19,7:26,4
+chr22	10742869	.	T	C	0	PASS	DP=287;GPV=1;SPV=0.046361;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:120,14:56,5:64,9
+chr22	10745438	.	A	T	0	PASS	DP=200;GPV=1;SPV=0.015051;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:90,25:29,5:61,20
+chr22	10757234	.	T	G	0	PASS	DP=224;GPV=1;SPV=0.033479;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:95,11:36,6:59,5
+chr22	10768778	.	G	A	0	PASS	DP=346;GPV=1;SPV=0.038236;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:181:162,19:78,12:84,7
+chr22	10768787	.	A	G	0	PASS	DP=366;GPV=1;SPV=0.026932;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:186:167,19:79,9:88,10
+chr22	10780500	.	G	A	0	PASS	DP=389;GPV=1;SPV=0.046874;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:197:169,28:73,12:96,16
+chr22	10936194	.	C	CAGAGT	0	PASS	DP=450;GPV=1;SPV=0.013438;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:212:186,26:106,14:80,12
+chr22	11024987	.	T	C	0	PASS	DP=338;GPV=1;SPV=0.0014037;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:174:153,21:109,16:44,5
+chr22	11025062	.	C	T	0	PASS	DP=399;GPV=1;SPV=0.00012916;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:212:179,33:112,23:67,10
+chr22	11036904	.	T	A	0	PASS	DP=460;GPV=1;SPV=0.006115;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:230:202,28:119,18:83,10
+chr22	11040365	.	C	T	0	PASS	DP=349;GPV=1;SPV=0.015116;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:173:152,21:69,15:83,6
+chr22	11047471	.	T	A	0	PASS	DP=306;GPV=1;SPV=0.025476;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:145:128,17:64,9:64,8
+chr22	11066917	.	G	A	0	PASS	DP=201;GPV=1;SPV=0.032266;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:74,16:35,7:39,9
+chr22	11287400	.	A	G	0	PASS	DP=163;GPV=1;SPV=0.037475;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:64,17:35,9:29,8
+chr22	11364835	.	A	G	0	PASS	DP=111;GPV=1;SPV=0.02202;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,12:16,6:19,6
+chr22	11495194	.	G	A	0	PASS	DP=106;GPV=1;SPV=0.005134;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:36,16:13,9:23,7
+chr22	11621493	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:20,6:13,5
+chr22	11714661	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.021226;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,10:14,5:24,5
+chr22	11823982	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.013266;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:7,3:9,2
+chr22	11855605	.	G	T	0	PASS	DP=181;GPV=1;SPV=0.043506;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:76,16:51,13:25,3
+chr22	11862800	.	G	T	0	PASS	DP=206;GPV=1;SPV=0.038968;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:93,16:50,9:43,7
+chr22	11862849	.	C	T	0	PASS	DP=151;GPV=1;SPV=0.041357;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:66,10:29,5:37,5
+chr22	11871637	.	T	C	0	PASS	DP=580;GPV=1;SPV=0.012813;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:275:246,29:141,17:105,12
+chr22	11904955	.	T	G	0	PASS	DP=144;GPV=1;SPV=0.044719;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:55,8:28,1:27,7
+chr22	11906013	.	C	A	0	PASS	DP=373;GPV=1;SPV=0.042615;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:191:141,28:32,3:109,25
+chr22	11916341	.	G	A	0	PASS	DP=474;GPV=1;SPV=0.010093;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:239:205,34:118,20:87,14
+chr22	11926837	.	C	T	0	PASS	DP=410;GPV=1;SPV=0.031884;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:192:163,29:38,3:125,26
+chr22	11929811	.	T	C	0	PASS	DP=551;GPV=1;SPV=0.021314;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:261:221,40:107,18:114,22
+chr22	11935421	.	G	A	0	PASS	DP=275;GPV=1;SPV=0.0017406;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:126:112,14:73,11:39,3
+chr22	11946538	.	G	GAA	0	PASS	DP=104;GPV=1;SPV=0.026942;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,9:30,8:5,1
+chr22	11949347	.	C	T	0	PASS	DP=172;GPV=1;SPV=0.036639;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:77,17:46,11:31,6
+chr22	11973396	.	G	A	0	PASS	DP=157;GPV=1;SPV=0.043449;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:69,14:48,9:21,5
+chr22	11975335	.	G	A	0	PASS	DP=195;GPV=1;SPV=0.00066233;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:77,21:36,10:41,11
+chr22	11976021	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.024323;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:20,2:16,6
+chr22	12042814	.	C	A	0	PASS	DP=169;GPV=1;SPV=0.045055;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:66,11:22,4:44,7
+chr22	12053499	.	C	T	0	PASS	DP=353;GPV=1;SPV=0.025521;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:173:155,18:95,8:60,10
+chr22	12054125	.	C	T	0	PASS	DP=180;GPV=1;SPV=0.042478;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:75,14:40,6:35,8
+chr22	12055223	.	A	T	0	PASS	DP=291;GPV=1;SPV=0.0081715;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:128:106,22:57,19:49,3
+chr22	12070159	.	G	T	0	PASS	DP=287;GPV=1;SPV=0.0082858;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:143:122,21:67,7:55,14
+chr22	12118918	.	A	C	0	PASS	DP=374;GPV=1;SPV=0.00066572;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:181:145,28:76,11:69,17
+chr22	12126384	.	G	GT	0	PASS	DP=75;GPV=1;SPV=0.046917;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,7:9,4:16,3
+chr22	12138060	.	G	T	0	PASS	DP=285;GPV=1;SPV=0.0057945;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:151:126,24:67,13:59,11
+chr22	12150001	.	G	T	0	PASS	DP=179;GPV=1;SPV=0.033633;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:78,12:62,4:16,8
+chr22	12152289	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.025903;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:10,6:9,1
+chr22	12159672	.	A	C	0	PASS	DP=267;GPV=1;SPV=0.014775;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:129:116,13:72,10:44,3
+chr22	12182241	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,3:6,4
+chr22	12193370	.	G	A	0	PASS	DP=228;GPV=1;SPV=0.01726;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:94,23:53,9:41,14
+chr22	12208767	.	A	C	0	PASS	DP=138;GPV=1;SPV=0.015315;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:59,10:32,3:27,7
+chr22	12217959	.	G	A	0	PASS	DP=200;GPV=1;SPV=0.0076748;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:72,10:49,6:23,4
+chr22	12293433	.	CTCTCTT	C	0	PASS	DP=71;GPV=1;SPV=0.038142;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:5,1:19,4
+chr22	12338166	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.026058;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:15,7:7,3
+chr22	12338858	.	G	T	0	PASS	DP=48;GPV=1;SPV=0.036132;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:8,2:8,6
+chr22	12352720	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.027873;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:10,9:11,1
+chr22	12431738	.	C	G	0	PASS	DP=147;GPV=1;SPV=0.013069;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:58,15:33,10:25,5
+chr22	12541176	.	T	C	0	PASS	DP=137;GPV=1;SPV=0.030792;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:50,13:30,7:20,6
+chr22	12551706	.	T	A	0	PASS	DP=170;GPV=1;SPV=0.043922;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:73,15:38,7:35,8
+chr22	12576500	.	GA	G	0	PASS	DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:2,1:10,4
+chr22	12621083	.	TA	T	0	PASS	DP=264;GPV=1;SPV=0.009217;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:122:109,13:45,3:64,10
+chr22	12637618	.	A	AAGAGGGAAGGAAGGAG	0	PASS	DP=31;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,8:5,6:2,2
+chr22	12722614	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.042412;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,3:6,1
+chr22	12726017	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:0,0:10,4
+chr22	12885931	.	G	C	0	PASS	DP=108;GPV=1;SPV=0.0083841;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:13,6:21,5
+chr22	12891801	.	C	T	0	PASS	DP=118;GPV=1;SPV=0.024305;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:50,7:17,2:33,5
+chr22	15238437	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:9,3:0,2
+chr22	15479128	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:3,2:11,2
+chr22	15554780	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,3:11,1
+chr22	15599675	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:9,3:4,1
+chr22	15668211	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:13,4:10,2
+chr22	15669498	.	G	A	0	PASS	DP=145;GPV=1;SPV=0.0061689;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:63,18:42,12:21,6
+chr22	15721882	.	G	C	0	PASS	DP=42;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:7,4:10,1
+chr22	15724410	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.030104;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:9,4:0,0
+chr22	15775220	.	A	AGC	0	PASS	DP=40;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,9:7,5:6,4
+chr22	15824122	.	T	TAAAAAA	0	PASS	DP=31;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:8,5:2,1
+chr22	15833634	.	T	A	0	PASS	DP=78;GPV=1;SPV=0.015588;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:11,4:15,4
+chr22	15854667	.	A	G	0	PASS	DP=225;GPV=1;SPV=0.033997;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:105,15:44,7:61,8
+chr22	15859621	.	A	C	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr22	15880756	.	A	C	0	PASS	DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:5,3:7,3
+chr22	15941337	.	T	A	0	PASS	DP=64;GPV=1;SPV=0.03636;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:15,7:5,1
+chr22	15941749	.	C	A	0	PASS	DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:4,5:4,4
+chr22	16396135	.	C	CAA	0	PASS	DP=56;GPV=1;SPV=0.012544;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,7:10,2:8,5
+chr22	16420748	.	G	T	0	PASS	DP=147;GPV=1;SPV=0.0014424;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:63,12:26,3:37,9
+chr22	16437552	.	G	T	0	PASS	DP=108;GPV=1;SPV=0.049303;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:23,3:23,7
+chr22	17292166	.	G	GT	0	PASS	DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:6,2:1,2
+chr22	17399416	.	AT	A	0	PASS	DP=31;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:5,8:4,2
+chr22	17717380	.	C	A	0	PASS	DP=17;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,3:2,1:2,2
+chr22	17721492	.	G	GT	0	PASS	DP=31;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:5,6:2,2
+chr22	17982716	.	A	AT	0	PASS	DP=54;GPV=1;SPV=0.0052744;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:13,2:10,7
+chr22	18373376	.	A	C	0	PASS	DP=128;GPV=1;SPV=0.036466;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:51,13:32,7:19,6
+chr22	18538824	.	A	C	0	PASS	DP=35;GPV=1;SPV=0.018501;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,2:4,3
+chr22	18551267	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.020061;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:13,2:6,3
+chr22	18736176	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.083787;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:3,1:19,5
+chr22	18846304	.	A	C	0	PASS	DP=95;GPV=1;SPV=0.0268;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:10,4:22,6
+chr22	19959866	.	G	T	0	PASS	DP=41;GPV=1;SPV=0.0086203;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:7,3:7,3
+chr22	20330019	.	A	G	0	PASS	DP=97;GPV=1;SPV=0.035027;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,8:26,7:20,1
+chr22	20518070	.	T	TGACATTGACGTGAGGGACTGCCATAATGCGTC	0	PASS	DP=39;GPV=1;SPV=0.038176;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:4,3:5,1
+chr22	21114146	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,3:2,1
+chr22	21128721	.	GC	G	0	PASS	DP=55;GPV=1;SPV=0.024966;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:16,5:2,3
+chr22	21128840	.	A	C	0	PASS	DP=49;GPV=1;SPV=0.043201;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:1,2:17,4
+chr22	21149908	.	T	TC	0	PASS	DP=64;GPV=1;SPV=0.064403;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:10,1:19,3
+chr22	21166157	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:5,1:7,6
+chr22	21254316	.	A	AT	0	PASS	DP=122;GPV=1;SPV=0.03249;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:49,10:14,1:35,9
+chr22	21274874	.	C	G	0	PASS	DP=111;GPV=1;SPV=0.0033913;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:38,17:30,13:8,4
+chr22	21275550	.	C	T	0	PASS	DP=133;GPV=1;SPV=0.0065321;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:53,13:25,4:28,9
+chr22	21278152	.	G	C	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:0,0:7,4
+chr22	21289816	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.033362;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:10,4:21,6
+chr22	21307922	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.025948;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:18,8:14,2
+chr22	21319485	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:15,3:2,1
+chr22	21319702	.	T	A	0	PASS	DP=62;GPV=1;SPV=0.034805;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:10,1:17,7
+chr22	21354436	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.020715;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:9,3:0,3
+chr22	21842359	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.0045922;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:3,2:4,6
+chr22	24651910	.	TC	T	0	PASS	DP=137;GPV=1;SPV=0.0061914;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:57,9:44,7:13,2
+chr22	24670041	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.036165;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:12,4:19,1
+chr22	25547404	.	T	TAC	0	PASS	DP=42;GPV=1;SPV=0.005974;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:8,6:2,3
+chr22	26457209	.	A	AC	0	PASS	DP=35;GPV=1;SPV=0.023879;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:7,2:7,4
+chr22	31114516	.	C	CA	0	PASS	DP=32;GPV=1;SPV=0.0077765;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:4,4:3,3
+chr22	31402505	.	C	CT	0	PASS	DP=21;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,7:1,6:1,1
+chr22	32368193	.	C	CAA	0	PASS	DP=44;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:4,4:8,3
+chr22	32447607	.	C	CTT	0	PASS	DP=27;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:7,6:2,2
+chr22	33661217	.	A	ATT	0	PASS	DP=37;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:8,7:1,1
+chr22	33774546	.	G	C	0	PASS	DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:8,1:4,3
+chr22	33836842	.	C	T	0	PASS	DP=61;GPV=1;SPV=9.9789e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:7,6:8,6
+chr22	34331129	.	C	T	0	PASS	DP=58;GPV=1;SPV=1.6305e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,16:5,10:6,6
+chr22	35428023	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:5,7:5,2
+chr22	36860650	.	A	G	0	PASS	DP=73;GPV=1;SPV=8.6742e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:16,22:5,8:11,14
+chr22	37098038	.	C	CG	0	PASS	DP=49;GPV=1;SPV=0.010062;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:11,3:2,3
+chr22	38067307	.	C	CTT	0	PASS	DP=24;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,5:5,1
+chr22	39121584	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.012526;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:11,4:8,4
+chr22	39341345	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.0042541;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:7,7:6,6
+chr22	41637962	.	T	TAA	0	PASS	DP=25;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,5:2,4:2,1
+chr22	41649160	.	A	G	0	PASS	DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:3,3:6,2
+chr22	42731960	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:7,4:4,6
+chr22	43087837	.	C	CAA	0	PASS	DP=37;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:9,6:7,2
+chr22	43905254	.	C	G	0	PASS	DP=75;GPV=1;SPV=0.038866;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:16,1:13,7
+chr22	44767339	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.00035142;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:4,4:7,5
+chr22	45222632	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:5,1:13,3
+chr22	45929864	.	C	CCATTCATA	0	PASS	DP=44;GPV=1;SPV=0.0075035;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,8:4,4:6,4
+chr22	45929922	.	TCCCATCCA	T	0	PASS	DP=41;GPV=1;SPV=0.030216;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,1:8,3
+chr22	47414863	.	ATTTT	A	0	PASS	DP=42;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:8,4:3,3:5,1
+chr22	47765875	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.0054908;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:7,4:7,2
+chr22	48788140	.	AT	A	0	PASS	DP=37;GPV=1;SPV=0.030571;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:4,1:6,4
+chr22	48950976	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.00037903;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:10,5:11,8
+chr22	49167163	.	A	C	0	PASS	DP=29;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,2:0,0:7,2
+chr22	49489523	.	G	C	0	PASS	DP=34;GPV=1;SPV=0.028921;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:3,5:7,1
+chr22	49686911	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,3:8,1
+chr22	49728793	.	GGAGAGCCGGACACCCGGGAGAGCCGGACACCCGA	G	0	PASS	DP=57;GPV=1;SPV=0.037309;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:12,1:6,4
+chr22	49973519	.	ATGTGTGGTG	A	0	PASS	DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,2:1,2
+chr22	50029417	.	A	C	0	PASS	DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:6,1:1,1
+chr3	599741	.	AT	A	0	PASS	DP=133;GPV=1;SPV=0.034435;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:13,4:31,7
+chr3	1753287	.	A	T	0	PASS	DP=48;GPV=1;SPV=0.0015793;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:6,3:8,4
+chr3	3699388	.	CAAAAA	C	0	PASS	DP=33;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,7:8,6:2,1
+chr3	4258814	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.028271;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,1:4,5
+chr3	4843074	.	G	GT	0	PASS	DP=25;GPV=1;SPV=0.047431;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr3	5247207	.	A	C	0	PASS	DP=22;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:0,2:0,1:0,1
+chr3	5304516	.	A	C	0	PASS	DP=67;GPV=1;SPV=0.078413;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,4:15,1:14,3
+chr3	6341515	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.021877;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:12,4:16,2
+chr3	6341516	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.054568;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:12,4:18,1
+chr3	6814474	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.00018629;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:9,5:10,5
+chr3	7566110	.	T	G	0	PASS	DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,2:0,0:1,2
+chr3	7566111	.	T	G	0	PASS	DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,2:0,0:1,2
+chr3	8238775	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:3,2:2,3
+chr3	9406607	.	C	CAAAAAA	0	PASS	DP=45;GPV=1;SPV=0.0057147;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:9,9:4,2
+chr3	9479221	.	CAAAAAA	C	0	PASS	DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:9,5:4,1
+chr3	9498203	.	CTTTTTT	C	0	PASS	DP=21;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,7:2,6:1,1
+chr3	10968336	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.040704;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:10,1:12,3
+chr3	11183855	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,3:1,1
+chr3	11404125	.	AT	A	0	PASS	DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:6,4:2,1
+chr3	12778813	.	C	CA	0	PASS	DP=20;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:0,3:3,2
+chr3	14665263	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.014744;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:17,9:9,7:8,2
+chr3	17775993	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.043201;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:12,4:6,2
+chr3	20738988	.	T	TACACACAC	0	PASS	DP=31;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:3,2:2,3
+chr3	20954140	.	A	ATTTTT	0	PASS	DP=32;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,6:2,2:3,4
+chr3	22686547	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:4,2:3,1:1,1
+chr3	23988023	.	C	CTCCTTCCTTCCTTCCT	0	PASS	DP=30;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:2,1:8,3
+chr3	25053747	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:9,5:12,4
+chr3	26591051	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.0001095;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:8,6:7,6
+chr3	26826129	.	CT	C	0	PASS	DP=20;GPV=1;SPV=0.0044376;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:2,6:1,5:1,1
+chr3	26963139	.	C	A	0	PASS	DP=45;GPV=1;SPV=0.0065711;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:4,8:9,4
+chr3	26987052	.	C	CAA	0	PASS	DP=36;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:8,6:4,1
+chr3	27063816	.	C	T	0	PASS	DP=57;GPV=1;SPV=2.7872e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:12,18:6,7:6,11
+chr3	32300976	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.01494;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:12,8:3,5:9,3
+chr3	32573362	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,3:2,1
+chr3	32787355	.	C	CA	0	PASS	DP=31;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,6:2,4:5,2
+chr3	33296682	.	G	A	0	PASS	DP=60;GPV=1;SPV=1.3134e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,13:10,7:6,6
+chr3	35443151	.	G	A	0	PASS	DP=57;GPV=1;SPV=5.7929e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:7,8:4,6
+chr3	35985014	.	G	GT	0	PASS	DP=43;GPV=1;SPV=0.0023186;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:6,7:9,2
+chr3	36699022	.	C	G	0	PASS	DP=64;GPV=1;SPV=2.6443e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:10,4:9,9
+chr3	37305094	.	T	G	0	PASS	DP=58;GPV=1;SPV=0.018191;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:14,2:11,4
+chr3	39232485	.	C	A	0	PASS	DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:15,2:10,2
+chr3	39560325	.	G	A	0	PASS	DP=69;GPV=1;SPV=1.4901e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:20,19:7,10:13,9
+chr3	40462373	.	C	CTTT	0	PASS	DP=22;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:3,2:5,2
+chr3	41012356	.	C	CTTT	0	PASS	DP=32;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:6,4:3,2
+chr3	42412362	.	GA	G	0	PASS	DP=35;GPV=1;SPV=0.013803;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:11,5:1,1
+chr3	42483212	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.0091334;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,7:5,4:3,3
+chr3	42655741	.	A	G	0	PASS	DP=63;GPV=1;SPV=6.8268e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:13,6:6,12
+chr3	43322951	.	C	CAAAAAAAA	0	PASS	DP=18;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:2,2:3,2
+chr3	44846771	.	CA	C	0	PASS	DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,5:3,1
+chr3	44966036	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.028;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:7,2:12,2
+chr3	45350184	.	C	T	0	PASS	DP=56;GPV=1;SPV=9.294e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:8,6:9,6
+chr3	46654156	.	C	A	0	PASS	DP=46;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:20:0,6:0,4:0,2
+chr3	47529887	.	T	TA	0	PASS	DP=37;GPV=1;SPV=0.010021;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:5,2:6,3
+chr3	50142006	.	T	TTTTC	0	PASS	DP=28;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:1,3:7,2
+chr3	50190920	.	G	GAA	0	PASS	DP=27;GPV=1;SPV=0.022476;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,8:9,5:0,3
+chr3	51774593	.	TAGAG	T	0	PASS	DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,5:2,3:0,2
+chr3	53520894	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.0016587;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,7:1,3:5,4
+chr3	53520902	.	TTC	T	0	PASS	DP=49;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,7:6,3:5,4
+chr3	54318693	.	C	CT	0	PASS	DP=24;GPV=1;SPV=0.013124;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:6,5:1,3
+chr3	54660143	.	CT	C	0	PASS	DP=39;GPV=1;SPV=0.0012644;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:5,4:5,3
+chr3	55388463	.	G	T	0	PASS	DP=16;GPV=1;SPV=0.025058;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:1,5:0,1:1,4
+chr3	58228101	.	CAAATAAAT	C	0	PASS	DP=38;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:4,6:9,4
+chr3	58990754	.	G	GGTGTGT	0	PASS	DP=42;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:15,3:7,3
+chr3	59166836	.	A	C	0	PASS	DP=58;GPV=1;SPV=0.055981;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:12,2:13,2
+chr3	60483824	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.00029085;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:10,9:13,6
+chr3	63198755	.	G	GTATA	0	PASS	DP=33;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,4:8,2:7,2
+chr3	64128743	.	CA	C	0	PASS	DP=28;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,8:2,7:1,1
+chr3	64456467	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.023915;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,18:8,11:10,7
+chr3	64791797	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.0098124;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:8,3:7,1
+chr3	64899720	.	T	TATACATATATATATATAC	0	PASS	DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:1,3:6,1
+chr3	65621917	.	T	TCACACACACACACACA	0	PASS	DP=33;GPV=1;SPV=0.024789;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:3,3:5,2
+chr3	66882631	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:7,3:5,1
+chr3	67782427	.	G	GTT	0	PASS	DP=27;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:5,2:3,2
+chr3	69366062	.	C	A	0	PASS	DP=39;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,2:3,1:2,1
+chr3	71147019	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.00061107;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:13,3:10,7
+chr3	71632297	.	A	AACACACACACAC	0	PASS	DP=41;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,5:8,3:11,2
+chr3	72908239	.	C	T	0	PASS	DP=65;GPV=1;SPV=3.4009e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:18,16:8,12:10,4
+chr3	73205094	.	AAG	A	0	PASS	DP=31;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,6:4,4:0,2
+chr3	73241254	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,4:5,3:8,1
+chr3	73424541	.	CA	C	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:8,3:4,1
+chr3	75186856	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:12,3:14,1
+chr3	75358988	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:4,5:9,2
+chr3	75580890	.	T	G	0	PASS	DP=34;GPV=1;SPV=0.015698;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:5,2:6,3
+chr3	75775340	.	TTAAAG	T	0	PASS	DP=119;GPV=1;SPV=0.027384;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:45,13:13,7:32,6
+chr3	75854035	.	A	G	0	PASS	DP=76;GPV=1;SPV=0.027169;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:23,2:10,3
+chr3	76028843	.	G	T	0	PASS	DP=69;GPV=1;SPV=5.5134e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:9,5:8,4
+chr3	76579786	.	CA	C	0	PASS	DP=21;GPV=1;SPV=0.0022624;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:2,9:1,7:1,2
+chr3	76834020	.	T	TTCTC	0	PASS	DP=53;GPV=1;SPV=0.013481;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:11,1:11,6
+chr3	77112487	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.00013223;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:12,7:7,3
+chr3	77565112	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.053727;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:13,2:13,3
+chr3	77787423	.	G	GTT	0	PASS	DP=28;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,4:4,3:3,1
+chr3	79953852	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.00012013;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:10,9:11,2
+chr3	80399093	.	C	A	0	PASS	DP=57;GPV=1;SPV=1.3529e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:6,6:7,5
+chr3	81149010	.	A	AT	0	PASS	DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,3:2,3
+chr3	81604286	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,3:3,1:1,2
+chr3	81813389	.	AAAATAAATAAAT	A	0	PASS	DP=38;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:5,3:7,4
+chr3	82905562	.	G	C	0	PASS	DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:5,3:12,1
+chr3	83640202	.	A	C	0	PASS	DP=52;GPV=1;SPV=0.0005553;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:9,5:7,4
+chr3	86420996	.	A	C	0	PASS	DP=48;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:3,2:1,1:2,1
+chr3	89218869	.	T	G	0	PASS	DP=41;GPV=1;SPV=0.0086203;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:8,3:6,3
+chr3	90542825	.	C	T	0	PASS	DP=53;GPV=1;SPV=4.45e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:7,5:8,8
+chr3	90821830	.	C	T	0	PASS	DP=288;GPV=1;SPV=0.029015;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:135:115,20:59,10:56,10
+chr3	90844475	.	A	T	0	PASS	DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:11,4:0,0
+chr3	90874407	.	A	G	0	PASS	DP=106;GPV=1;SPV=0.0072124;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:6,3:30,4
+chr3	90889587	.	G	C	0	PASS	DP=248;GPV=1;SPV=0.012149;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:91,12:34,4:57,8
+chr3	90904737	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr3	90916593	.	C	A	0	PASS	DP=266;GPV=1;SPV=0.010902;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:128:113,15:8,1:105,14
+chr3	91018055	.	C	A	0	PASS	DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:30,4:0,0
+chr3	91081678	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:21,4:0,0
+chr3	91161022	.	A	C	0	PASS	DP=46;GPV=1;SPV=0.043019;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:12,4:0,0
+chr3	91185920	.	T	A	0	PASS	DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:19,3:4,1
+chr3	91189955	.	C	G	0	PASS	DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:10,4:1,0
+chr3	91257470	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.045541;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:13,1:25,6
+chr3	91740897	.	C	G	0	PASS	DP=26;GPV=1;SPV=0.086154;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr3	92488894	.	A	T	0	PASS	DP=175;GPV=1;SPV=0.043273;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:67,17:51,13:16,4
+chr3	94791475	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.00042492;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:3,4:11,4
+chr3	95459522	.	C	T	0	PASS	DP=59;GPV=1;SPV=4.9559e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:7,5:7,8
+chr3	96621733	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,2:6,2
+chr3	96994734	.	G	T	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,3:4,1
+chr3	96994736	.	G	T	0	PASS	DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:8,3:3,1
+chr3	98305488	.	C	CTTTT	0	PASS	DP=37;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,5:5,4:15,1
+chr3	98743000	.	CT	C	0	PASS	DP=19;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,4:1,2
+chr3	98838182	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.011145;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,6:9,2:10,4
+chr3	98948536	.	AT	A	0	PASS	DP=46;GPV=1;SPV=0.0021725;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:10,6:4,1
+chr3	99135180	.	A	ATGTG	0	PASS	DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:10,2:6,3
+chr3	102971951	.	T	A	0	PASS	DP=64;GPV=1;SPV=0.0004122;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:10,9:15,4
+chr3	103451785	.	T	G	0	PASS	DP=49;GPV=1;SPV=0.21888;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:13,3:17,1
+chr3	103701026	.	C	A	0	PASS	DP=61;GPV=1;SPV=1.8239e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:6,9:11,4
+chr3	104124799	.	T	A	0	PASS	DP=62;GPV=1;SPV=7.0073e-09;SS=2;SSC=81;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:11,21:8,11:3,10
+chr3	109426843	.	TTTATGTTATGTTATGTTATG	T	0	PASS	DP=43;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,8:6,4:6,4
+chr3	109666693	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,1:14,3
+chr3	110636095	.	G	C	0	PASS	DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:12,1:14,3
+chr3	111834081	.	T	A	0	PASS	DP=51;GPV=1;SPV=0.046888;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:9,3:8,4
+chr3	111960171	.	A	T	0	PASS	DP=69;GPV=1;SPV=0.0046174;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:16,6:13,2
+chr3	113687229	.	T	TCA	0	PASS	DP=37;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:3,8:2,5:1,3
+chr3	113887096	.	G	T	0	PASS	DP=33;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,4:6,1:3,3
+chr3	114188210	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,3:5,3
+chr3	114901265	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.028936;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:8,3:5,1
+chr3	116009264	.	G	T	0	PASS	DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:9,1:11,3
+chr3	118566043	.	TGTATATAC	T	0	PASS	DP=56;GPV=1;SPV=0.014357;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:9,5:10,5
+chr3	118717750	.	T	G	0	PASS	DP=48;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:6,4:15,2
+chr3	119495392	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:3,2:5,7
+chr3	119662181	.	A	G	0	PASS	DP=28;GPV=1;SPV=0.013462;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,3:3,2:1,1
+chr3	120262175	.	C	CTT	0	PASS	DP=38;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,7:4,6:1,1
+chr3	120849637	.	CT	C	0	PASS	DP=45;GPV=1;SPV=0.0022747;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,5:6,3
+chr3	121160238	.	C	A	0	PASS	DP=45;GPV=1;SPV=6.9497e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:3,4:8,7
+chr3	121337439	.	T	TA	0	PASS	DP=29;GPV=1;SPV=0.0055395;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:3,4:2,2
+chr3	124602945	.	T	TG	0	PASS	DP=45;GPV=1;SPV=0.029987;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:7,4:6,3
+chr3	124643006	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.021089;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:6,8:9,3
+chr3	125198780	.	AT	A	0	PASS	DP=64;GPV=1;SPV=0.00028624;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:18,16:12,13:6,3
+chr3	125768878	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.021683;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:7,3:9,2
+chr3	125866707	.	T	C	0	PASS	DP=45;GPV=1;SPV=5.4866e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:5,4:4,5
+chr3	129752683	.	A	C	0	PASS	DP=53;GPV=1;SPV=0.00014234;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:6,3:11,10
+chr3	130198260	.	T	C	0	PASS	DP=79;GPV=1;SPV=0.043405;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:9,5:20,2
+chr3	132150603	.	C	CTGTGTG	0	PASS	DP=39;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:1,2:9,3
+chr3	135266599	.	C	A	0	PASS	DP=52;GPV=1;SPV=4.0875e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:7,6:5,4
+chr3	136376016	.	C	CAAAATAAAATAAAATAAAATAAAAT	0	PASS	DP=29;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,5:4,3:3,2
+chr3	136769449	.	C	CAA	0	PASS	DP=31;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,6:5,5:3,1
+chr3	138848087	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:6,5:9,5
+chr3	138925482	.	C	CTTT	0	PASS	DP=49;GPV=1;SPV=0.018165;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,9:9,7:6,2
+chr3	139689042	.	AAC	A	0	PASS	DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:16,1:12,3
+chr3	139842941	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.0034822;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:9,3:8,3
+chr3	142575468	.	CAAA	C	0	PASS	DP=33;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:7,5:2,2
+chr3	145109442	.	T	A	0	PASS	DP=61;GPV=1;SPV=2.4769e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:12,22:4,12:8,10
+chr3	145963953	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:6,4:4,3
+chr3	146283181	.	A	AT	0	PASS	DP=43;GPV=1;SPV=4.818e-05;SS=2;SSC=43;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:6,6:3,4
+chr3	147816087	.	A	G	0	PASS	DP=73;GPV=1;SPV=6.2767e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:13,9:12,4
+chr3	148411385	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,4:8,3:5,1
+chr3	148542106	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,3:3,2:2,1
+chr3	148542139	.	T	G	0	PASS	DP=17;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:2,1:2,3
+chr3	150717139	.	C	A	0	PASS	DP=38;GPV=1;SPV=0.039412;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,6:5,4:4,2
+chr3	151237366	.	T	C	0	PASS	DP=24;GPV=1;SPV=0.004995;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:1,4:0,1:1,3
+chr3	151993951	.	T	TA	0	PASS	DP=16;GPV=1;SPV=0.009324;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:2,6:1,2:1,4
+chr3	152249646	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.00073638;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:15,6:12,8
+chr3	152989471	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.0091398;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,7:3,4:3,3
+chr3	153642273	.	G	GGAA	0	PASS	DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:8,3:6,4
+chr3	154579355	.	GA	G	0	PASS	DP=43;GPV=1;SPV=0.0036547;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:8,3:2,4
+chr3	155772772	.	C	CTGTGTG	0	PASS	DP=34;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,5:4,3:0,2
+chr3	158194690	.	C	A	0	PASS	DP=17;GPV=1;SPV=0.012217;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:2,7:1,5:1,2
+chr3	160681400	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.024803;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:6,3:13,4
+chr3	161038233	.	C	CAAAA	0	PASS	DP=35;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,5:3,4:2,1
+chr3	162307799	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:8,3:1,2
+chr3	162939987	.	T	G	0	PASS	DP=35;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:6,3:2,3
+chr3	163161129	.	T	TTTGTA	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:4,1:6,3
+chr3	163425777	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,2:3,1:2,1
+chr3	163650440	.	T	A	0	PASS	DP=67;GPV=1;SPV=5.9166e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:10,8:11,4
+chr3	163770821	.	C	A	0	PASS	DP=61;GPV=1;SPV=4.7123e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,4:6,5
+chr3	164942602	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,3:2,1
+chr3	165084198	.	A	T	0	PASS	DP=59;GPV=1;SPV=0.019456;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,1:8,3
+chr3	165134330	.	CA	C	0	PASS	DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,3:0,1
+chr3	165187211	.	A	AGTGT	0	PASS	DP=45;GPV=1;SPV=0.015677;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:12,6:3,2
+chr3	166465218	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:12,2:18,2
+chr3	167300610	.	T	C	0	PASS	DP=36;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,4:8,1:2,3
+chr3	167894972	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:14,2:13,2
+chr3	169237636	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.35217;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:8,2:3,2
+chr3	170424039	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:8,4:4,1:4,3
+chr3	170775875	.	C	A	0	PASS	DP=68;GPV=1;SPV=2.8276e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:18,22:8,8:10,14
+chr3	171656156	.	T	TTTTATTTATTTATTTA	0	PASS	DP=49;GPV=1;SPV=0.0065287;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:6,6:12,1
+chr3	173123601	.	AT	A	0	PASS	DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:9,3:4,2
+chr3	173195760	.	C	T	0	PASS	DP=58;GPV=1;SPV=3.4859e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,15:8,6:10,9
+chr3	173390373	.	A	AAC	0	PASS	DP=51;GPV=1;SPV=0.0024535;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:12,5:6,3
+chr3	173392472	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.00083396;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:10,9:2,2
+chr3	174688478	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:1,2:0,1:1,1
+chr3	177078588	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.030583;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:9,4:2,3
+chr3	181450618	.	A	T	0	PASS	DP=68;GPV=1;SPV=0.00031835;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:10,7:13,3
+chr3	185548381	.	G	GA	0	PASS	DP=35;GPV=1;SPV=0.008646;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:7,2:6,6
+chr3	188220216	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.00011781;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:8,3:8,6
+chr3	188625479	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.01057;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:8,3:8,3
+chr3	189523985	.	G	A	0	PASS	DP=54;GPV=1;SPV=1.5161e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:9,4:4,8
+chr3	190379985	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,1:4,3
+chr3	190660288	.	C	A	0	PASS	DP=49;GPV=1;SPV=0.0049228;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:12,3:7,5
+chr3	190825850	.	T	C	0	PASS	DP=36;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,4:1,3:3,1
+chr3	190883811	.	G	GTTTTATTTTATTTTA	0	PASS	DP=41;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,7:3,4:3,3
+chr3	192861597	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.010997;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:12,2:11,3
+chr3	194014156	.	AC	A	0	PASS	DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:11,2:4,2
+chr3	195481361	.	C	T	0	PASS	DP=101;GPV=1;SPV=0.026778;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:23,6:8,4
+chr3	195481549	.	C	A	0	PASS	DP=180;GPV=1;SPV=0.048466;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:74,10:35,6:39,4
+chr3	195484873	.	T	A	0	PASS	DP=63;GPV=1;SPV=0.035906;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:7,6:14,3
+chr3	195486323	.	C	T	0	PASS	DP=101;GPV=1;SPV=0.018361;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:20,3:20,4
+chr3	195487825	.	C	A	0	PASS	DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:2,0:19,4
+chr3	195499116	.	CTGTA	C	0	PASS	DP=152;GPV=1;SPV=0.045963;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:66,10:40,6:26,4
+chr3	195499282	.	G	A	0	PASS	DP=149;GPV=1;SPV=0.03119;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:66,11:28,6:38,5
+chr3	195669138	.	G	A	0	PASS	DP=84;GPV=1;SPV=0.048496;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:20,6:12,3
+chr3	195689548	.	G	T	0	PASS	DP=132;GPV=1;SPV=0.03424;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:60,7:35,3:25,4
+chr3	196015564	.	A	T	0	PASS	DP=68;GPV=1;SPV=7.1254e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,18:13,10:5,8
+chr3	197665144	.	C	T	0	PASS	DP=169;GPV=1;SPV=0.0051126;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:55,14:39,4:16,10
+chr3	198013820	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.01373;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,1:3,4
+chr3	198103562	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:4,1:2,1
+chr4	25558	.	T	C	0	PASS	DP=108;GPV=1;SPV=0.0026406;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:5,1:36,6
+chr4	27296	.	C	A	0	PASS	DP=287;GPV=1;SPV=0.021392;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:133:115,18:46,10:69,8
+chr4	28635	.	G	T	0	PASS	DP=279;GPV=1;SPV=0.017318;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:142:115,27:68,17:47,10
+chr4	29099	.	G	C	0	PASS	DP=333;GPV=1;SPV=0.02492;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:144:128,16:63,8:65,8
+chr4	39539	.	G	A	0	PASS	DP=326;GPV=1;SPV=0.0050242;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:155:133,22:64,9:69,13
+chr4	40433	.	T	C	0	PASS	DP=289;GPV=1;SPV=0.015862;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:120,20:47,10:73,10
+chr4	48672	.	C	T	0	PASS	DP=284;GPV=1;SPV=0.042966;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:149:126,23:73,14:53,9
+chr4	1493999	.	C	A	0	PASS	DP=74;GPV=1;SPV=0.051194;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:15,2:17,2
+chr4	1767413	.	G	C	0	PASS	DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:0,0:7,4
+chr4	3973437	.	G	GGAGA	0	PASS	DP=42;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,7:7,6:5,1
+chr4	5176438	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.0016312;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,8:4,6:0,2
+chr4	6569717	.	A	G	0	PASS	DP=23;GPV=1;SPV=0.11029;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:4,2:0,0
+chr4	6977075	.	C	CCCT	0	PASS	DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:3,4:2,5
+chr4	7165318	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,2:4,1:2,1
+chr4	7739206	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.004688;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:14,4:12,4
+chr4	7817635	.	T	TG	0	PASS	DP=42;GPV=1;SPV=0.013669;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:4,4:10,1
+chr4	9040909	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:10,6:1,1
+chr4	10136329	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:1,3:1,1:0,2
+chr4	11886330	.	C	CAT	0	PASS	DP=55;GPV=1;SPV=0.0076913;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:9,5:13,2
+chr4	13007575	.	T	C	0	PASS	DP=42;GPV=1;SPV=3.0378e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,13:6,7:1,6
+chr4	13515440	.	A	T	0	PASS	DP=62;GPV=1;SPV=7.6487e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:15,17:9,12:6,5
+chr4	16910536	.	TC	T	0	PASS	DP=25;GPV=1;SPV=0.18182;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,2:1,1:2,1
+chr4	17000537	.	T	TCC	0	PASS	DP=35;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:7,2:9,6
+chr4	18105962	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:2,9:1,7:1,2
+chr4	18358266	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.00056426;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:8,7:9,1
+chr4	19012460	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.0011064;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:11,6:4,1
+chr4	19135688	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:12,4:10,3:2,1
+chr4	19799201	.	G	T	0	PASS	DP=55;GPV=1;SPV=2.0205e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,16:7,11:9,5
+chr4	20261340	.	G	C	0	PASS	DP=56;GPV=1;SPV=5.4482e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:11,6:5,6
+chr4	20303009	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.012328;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,5:5,2:7,3
+chr4	20362937	.	T	A	0	PASS	DP=58;GPV=1;SPV=0.00025782;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:4,3:9,4
+chr4	20803470	.	CAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=18;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,5:1,1
+chr4	20837623	.	G	GAT	0	PASS	DP=41;GPV=1;SPV=0.0052884;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:4,5:5,4
+chr4	21200339	.	CAT	C	0	PASS	DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,2:6,2
+chr4	21200348	.	ATGTGTG	A	0	PASS	DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,2:6,2
+chr4	21519732	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.093333;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:4,1:2,1
+chr4	22777492	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,6:4,2:7,4
+chr4	24159206	.	C	CTT	0	PASS	DP=20;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,3:4,1
+chr4	24229843	.	C	CA	0	PASS	DP=44;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,10:11,6:1,4
+chr4	24387764	.	GAGAGAA	G	0	PASS	DP=31;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:7,3:3,1
+chr4	24430255	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:5,3:2,1
+chr4	27702962	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.0001763;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:4,4:8,7
+chr4	27832897	.	G	GTA	0	PASS	DP=20;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:5,3:1,1
+chr4	28368863	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.0010998;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,12:6,9:2,3
+chr4	28599638	.	AT	A	0	PASS	DP=24;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,5:3,4:3,1
+chr4	28780849	.	G	GA	0	PASS	DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,2:8,2
+chr4	29036293	.	T	TAGAGAGAG	0	PASS	DP=34;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,5:7,3:2,2
+chr4	30251742	.	G	GT	0	PASS	DP=40;GPV=1;SPV=0.042595;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:4,2:6,2
+chr4	31794502	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.021615;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:15,3:14,4
+chr4	31949442	.	T	TCTGTGAATGCCCAAGTC	0	PASS	DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:7,4:7,7
+chr4	31998540	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:9,2:13,2
+chr4	32328479	.	A	G	0	PASS	DP=70;GPV=1;SPV=4.9527e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:17,23:5,14:12,9
+chr4	32415428	.	AGTTAGCT	A	0	PASS	DP=38;GPV=1;SPV=0.0029033;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:3,7:7,3
+chr4	32419738	.	T	A	0	PASS	DP=70;GPV=1;SPV=4.8683e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:11,6:12,7
+chr4	33608707	.	C	G	0	PASS	DP=56;GPV=1;SPV=1.8161e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:9,8:3,2
+chr4	34188552	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.00048983;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:13,4:9,8
+chr4	36555442	.	C	CTT	0	PASS	DP=28;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,6:5,5:2,1
+chr4	38135874	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.04966;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:7,2:13,4
+chr4	40216136	.	A	AT	0	PASS	DP=47;GPV=1;SPV=0.0020738;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:10,8:3,2
+chr4	40642727	.	T	G	0	PASS	DP=37;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,2:2,1:2,1
+chr4	41460395	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:7,1:5,8
+chr4	41515324	.	T	G	0	PASS	DP=73;GPV=1;SPV=0.0035372;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:12,3:8,2
+chr4	42257822	.	GTATT	G	0	PASS	DP=47;GPV=1;SPV=0.0054438;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,8:5,2:6,6
+chr4	42936026	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.0011989;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,16:2,4:5,12
+chr4	43101703	.	ATGTGTGTGTGTG	A	0	PASS	DP=18;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,2:1,2:0,0
+chr4	43271980	.	AAGATAGAT	A	0	PASS	DP=50;GPV=1;SPV=0.02677;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:10,6:6,2
+chr4	44045765	.	G	GA	0	PASS	DP=38;GPV=1;SPV=0.0034446;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:4,4:6,2
+chr4	44989685	.	G	T	0	PASS	DP=51;GPV=1;SPV=0.00042977;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:8,1:7,8
+chr4	45692158	.	TAA	T	0	PASS	DP=21;GPV=1;SPV=0.022977;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:1,8:0,4:1,4
+chr4	45740364	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.00020684;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:6,3:9,8
+chr4	46152997	.	T	TCAAGGTTACACAGGTACTAAATGGCAAAGC	0	PASS	DP=35;GPV=1;SPV=0.0074932;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:9,3:3,4
+chr4	47195444	.	ATGATAGATAGAT	A	0	PASS	DP=42;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,5:8,2:2,3
+chr4	49034001	.	G	A	0	PASS	DP=66;GPV=1;SPV=7.3475e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,16:12,9:12,7
+chr4	49155725	.	GATTCTGTTCCATTCCATTCCATTCCATTCC	G	0	PASS	DP=50;GPV=1;SPV=0.042001;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,6:7,2:6,4
+chr4	49158126	.	A	G	0	PASS	DP=261;GPV=1;SPV=0.00047133;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:119:105,14:40,10:65,4
+chr4	49159598	.	A	T	0	PASS	DP=149;GPV=1;SPV=0.023819;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:65,19:31,12:34,7
+chr4	49188826	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.029893;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:40,9:19,2:21,7
+chr4	49195988	.	C	T	0	PASS	DP=233;GPV=1;SPV=0.0187;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:76,13:37,9:39,4
+chr4	49209561	.	CTTCT	C	0	PASS	DP=426;GPV=1;SPV=0.028794;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:201:177,24:128,19:49,5
+chr4	49235636	.	T	C	0	PASS	DP=164;GPV=1;SPV=0.049948;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:71,15:33,9:38,6
+chr4	49268131	.	C	T	0	PASS	DP=250;GPV=1;SPV=0.014656;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:100,18:56,9:44,9
+chr4	49292167	.	T	TGGG	0	PASS	DP=133;GPV=1;SPV=0.045585;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:52,10:34,2:18,8
+chr4	49298009	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.028693;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:9,1:14,7
+chr4	49504533	.	G	A	0	PASS	DP=123;GPV=1;SPV=0.032041;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:45,10:19,6:26,4
+chr4	49521658	.	G	A	0	PASS	DP=149;GPV=1;SPV=0.029111;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:59,11:35,9:24,2
+chr4	49538737	.	C	T	0	PASS	DP=163;GPV=1;SPV=0.027785;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:72,11:39,4:33,7
+chr4	49539297	.	G	A	0	PASS	DP=212;GPV=1;SPV=0.030851;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:91,17:60,11:31,6
+chr4	49546529	.	C	G	0	PASS	DP=388;GPV=1;SPV=0.043726;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:210:174,27:61,11:113,16
+chr4	49580423	.	C	G	0	PASS	DP=466;GPV=1;SPV=0.036691;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:193,24:83,11:110,13
+chr4	49623761	.	G	C	0	PASS	DP=90;GPV=1;SPV=0.017246;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:23,3:18,3
+chr4	49893743	.	C	G	0	PASS	DP=85;GPV=1;SPV=0.040622;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:6,1:29,3
+chr4	50431596	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,4:0,0
+chr4	50600013	.	C	T	0	PASS	DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,0:5,3
+chr4	50644126	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.30924;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:21,3:19,3:2,0
+chr4	51059315	.	G	C	0	PASS	DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:4,8:8,1
+chr4	51574080	.	G	T	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr4	51895201	.	TA	T	0	PASS	DP=55;GPV=1;SPV=0.0010272;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:9,3:11,7
+chr4	55629615	.	CAAAA	C	0	PASS	DP=33;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,5:2,4:4,1
+chr4	56545718	.	C	CAA	0	PASS	DP=31;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:4,3:3,1
+chr4	56548991	.	C	CTT	0	PASS	DP=31;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:4,2:3,3
+chr4	57021485	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:2,4:2,4:0,0
+chr4	58752969	.	ATT	A	0	PASS	DP=46;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:9,3:7,3
+chr4	59130721	.	T	TA	0	PASS	DP=48;GPV=1;SPV=0.0014606;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,14:5,8:7,6
+chr4	60066131	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:8,4:3,1
+chr4	60220865	.	G	GTGTATATATA	0	PASS	DP=43;GPV=1;SPV=0.021263;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,3:7,1
+chr4	60696202	.	C	A	0	PASS	DP=68;GPV=1;SPV=0.0020609;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:17,8:13,3
+chr4	61893112	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,4:1,1:6,3
+chr4	62980752	.	C	T	0	PASS	DP=79;GPV=1;SPV=3.3946e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:6,8:9,4
+chr4	63086068	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.0064344;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:4,2:12,3
+chr4	63351189	.	T	G	0	PASS	DP=63;GPV=1;SPV=2.6179e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:14,17:5,6:9,11
+chr4	63535392	.	C	G	0	PASS	DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,3:5,2
+chr4	63536748	.	GACAA	G	0	PASS	DP=33;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:5,2:9,2
+chr4	64155422	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:0,3:0,1:0,2
+chr4	64351087	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.011858;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:1,3:4,1
+chr4	64610087	.	G	T	0	PASS	DP=75;GPV=1;SPV=0.00042022;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:15,6:12,4
+chr4	64880892	.	A	T	0	PASS	DP=32;GPV=1;SPV=0.0012514;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:1,2:4,3
+chr4	65045263	.	T	TAAGAAGAAGAAGAAG	0	PASS	DP=46;GPV=1;SPV=0.094902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,5:14,3:8,2
+chr4	65317488	.	A	AT	0	PASS	DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:17,2:11,2
+chr4	65681947	.	T	G	0	PASS	DP=63;GPV=1;SPV=5.5244e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:8,6:7,3
+chr4	66516477	.	G	GTA	0	PASS	DP=34;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:7,5:3,4
+chr4	67371441	.	G	GTGTGTT	0	PASS	DP=43;GPV=1;SPV=0.065489;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:10,1:7,3
+chr4	67604809	.	T	C	0	PASS	DP=64;GPV=1;SPV=4.5525e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,16:6,9:16,7
+chr4	68041060	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.0025253;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:4,2:4,8
+chr4	69526108	.	CAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=24;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:4,4:3,1
+chr4	70837563	.	C	CA	0	PASS	DP=24;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,4:0,2:4,2
+chr4	72007650	.	A	G	0	PASS	DP=62;GPV=1;SPV=1.5329e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:6,10:5,4
+chr4	73644879	.	GGT	G	0	PASS	DP=36;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,5:5,4:2,1
+chr4	74917072	.	C	CTTTTTTTT	0	PASS	DP=18;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,5:0,4:2,1
+chr4	75187112	.	T	C	0	PASS	DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:2,1:8,3
+chr4	76091679	.	C	CT	0	PASS	DP=24;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,6:2,5:1,1
+chr4	76336181	.	CAAA	C	0	PASS	DP=34;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,11:7,9:3,2
+chr4	76646225	.	A	AATAAATATAT	0	PASS	DP=44;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:9,7:5,1
+chr4	76918351	.	G	A	0	PASS	DP=100;GPV=1;SPV=0.011197;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:17,4:23,4
+chr4	78872303	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,3:6,1
+chr4	79303076	.	TTATATATATATATA	T	0	PASS	DP=19;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,4:4,3:0,1
+chr4	80060190	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.00018954;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:5,7:6,2
+chr4	80868907	.	G	C	0	PASS	DP=58;GPV=1;SPV=0.031591;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:8,4:10,1
+chr4	81366582	.	A	AAAACCGACC	0	PASS	DP=54;GPV=1;SPV=0.053727;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:11,2:15,3
+chr4	83521118	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.021691;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:1,1:10,4
+chr4	85875093	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:2,4:2,2
+chr4	87022662	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.33319;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:12,2:14,2
+chr4	87197952	.	G	GTAAA	0	PASS	DP=45;GPV=1;SPV=0.013933;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,8:7,1
+chr4	90007095	.	CT	C	0	PASS	DP=45;GPV=1;SPV=0.0080725;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,10:13,7:6,3
+chr4	90796417	.	TTA	T	0	PASS	DP=44;GPV=1;SPV=0.020897;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,10:8,7:8,3
+chr4	91766222	.	C	CTA	0	PASS	DP=36;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,7:3,5:6,2
+chr4	91782584	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chr4	92073528	.	C	T	0	PASS	DP=56;GPV=1;SPV=1.8161e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:2,5:10,5
+chr4	92708101	.	G	T	0	PASS	DP=57;GPV=1;SPV=0.0044785;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:10,4:11,3
+chr4	92958866	.	G	T	0	PASS	DP=57;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:9,4:5,8
+chr4	93371741	.	C	CT	0	PASS	DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,4:0,0
+chr4	94418545	.	C	A	0	PASS	DP=49;GPV=1;SPV=0.00015299;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:9,5:5,6
+chr4	94524368	.	CAAAA	C	0	PASS	DP=23;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,5:2,4:0,1
+chr4	95087259	.	CATAT	C	0	PASS	DP=60;GPV=1;SPV=0.015001;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:8,1:10,3
+chr4	95087265	.	CTTCTAATCAATT	C	0	PASS	DP=57;GPV=1;SPV=0.018519;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,1:11,3
+chr4	95890247	.	TTA	T	0	PASS	DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:2,4:4,3
+chr4	96292651	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.1124;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:26,3:12,1:14,2
+chr4	98754508	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.0072285;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:21,6:11,2
+chr4	100568361	.	C	CAAAAAAAAAAAAAAAAAA	0	PASS	DP=17;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,4:2,4:0,0
+chr4	100836100	.	G	C	0	PASS	DP=43;GPV=1;SPV=1.4836e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,14:5,2:2,12
+chr4	102908195	.	CTT	C	0	PASS	DP=149;GPV=1;SPV=0.033882;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:56,13:32,5:24,8
+chr4	104464362	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:8,5:2,1
+chr4	105099523	.	G	GAA	0	PASS	DP=43;GPV=1;SPV=0.0010365;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,9:6,3:3,6
+chr4	107234720	.	C	CAA	0	PASS	DP=29;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:6,5:3,2
+chr4	108230622	.	T	G	0	PASS	DP=73;GPV=1;SPV=0.02902;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:18,3:14,2
+chr4	109430064	.	A	C	0	PASS	DP=46;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:1,4:0,1:1,3
+chr4	111078136	.	C	T	0	PASS	DP=52;GPV=1;SPV=2.2678e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:5,5:9,9
+chr4	112224517	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,2:1,1:3,1
+chr4	113205235	.	C	CAAA	0	PASS	DP=24;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:2,5:3,1
+chr4	113856891	.	A	T	0	PASS	DP=51;GPV=1;SPV=0.010227;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:12,4:9,3
+chr4	117227836	.	C	G	0	PASS	DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:8,4:12,6
+chr4	117610365	.	C	A	0	PASS	DP=40;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,4:2,2:2,2
+chr4	118451984	.	T	A	0	PASS	DP=32;GPV=1;SPV=0.0063218;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,6:4,3:4,3
+chr4	119835931	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.01246;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:4,5:6,2
+chr4	120099655	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.0001095;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:9,6:6,6
+chr4	120560931	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,2:4,1:2,1
+chr4	121124888	.	AGG	A	0	PASS	DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:15,3:5,1
+chr4	121145979	.	T	TA	0	PASS	DP=53;GPV=1;SPV=0.0012203;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:12,3:5,5
+chr4	121162601	.	G	T	0	PASS	DP=61;GPV=1;SPV=1.7819e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:8,3:6,11
+chr4	121427233	.	C	CT	0	PASS	DP=51;GPV=1;SPV=0.014324;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:9,2:9,3
+chr4	125180690	.	AAG	A	0	PASS	DP=25;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,4:7,3:1,1
+chr4	130548221	.	G	GA	0	PASS	DP=43;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:16,2:2,2
+chr4	131741404	.	A	G	0	PASS	DP=188;GPV=1;SPV=0.015965;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:74,10:42,3:32,7
+chr4	132151879	.	AT	A	0	PASS	DP=51;GPV=1;SPV=0.0024544;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:7,2:9,5
+chr4	132956792	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.01208;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,3:5,2
+chr4	133766670	.	G	GA	0	PASS	DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:21,3:6,1
+chr4	134154324	.	C	T	0	PASS	DP=60;GPV=1;SPV=5.0667e-09;SS=2;SSC=82;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:9,18:6,9:3,9
+chr4	134230518	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.0018725;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:13,5:15,6
+chr4	134599757	.	G	T	0	PASS	DP=62;GPV=1;SPV=1.1146e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,15:10,5:8,10
+chr4	134628423	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.028003;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:9,2:12,3
+chr4	135232343	.	A	T	0	PASS	DP=63;GPV=1;SPV=2.1173e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:9,5:7,6
+chr4	135424024	.	A	ATTT	0	PASS	DP=22;GPV=1;SPV=0.0003147;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:1,10:0,6:1,4
+chr4	136353407	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:9,6:1,3
+chr4	137294181	.	A	T	0	PASS	DP=60;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:3,3:2,1:1,2
+chr4	137486932	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:10,3:11,1
+chr4	137728455	.	AT	A	0	PASS	DP=62;GPV=1;SPV=2.1199e-05;SS=2;SSC=46;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:8,17:6,13:2,4
+chr4	140764434	.	GAAA	G	0	PASS	DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,2:9,2
+chr4	141070820	.	G	C	0	PASS	DP=55;GPV=1;SPV=0.0044568;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:4,3:11,2
+chr4	141070845	.	C	A	0	PASS	DP=49;GPV=1;SPV=0.0032451;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:3,3:9,2
+chr4	142571089	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.0035559;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:6,7:2,3
+chr4	143147103	.	C	A	0	PASS	DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:9,6:9,1
+chr4	145488476	.	TTG	T	0	PASS	DP=53;GPV=1;SPV=0.0023616;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,15:7,10:9,5
+chr4	145740240	.	CAAAAAAAAAA	C	0	PASS	DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:5,3:1,1
+chr4	147060358	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.004949;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:7,8:6,3
+chr4	148104340	.	T	TGTTTTGGTTTG	0	PASS	DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:5,2:8,2
+chr4	148589700	.	G	T	0	PASS	DP=71;GPV=1;SPV=2.7714e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:15,6:6,6
+chr4	148749498	.	GA	G	0	PASS	DP=37;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,6:6,5:2,1
+chr4	149703913	.	C	A	0	PASS	DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:11,4:8,5
+chr4	149861290	.	G	T	0	PASS	DP=59;GPV=1;SPV=0.00010405;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:10,3:5,6
+chr4	149995142	.	A	AAG	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:5,1:9,3
+chr4	150108246	.	C	T	0	PASS	DP=61;GPV=1;SPV=3.6371e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,14:8,7:11,7
+chr4	150733578	.	A	T	0	PASS	DP=46;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,5:8,3:2,2
+chr4	155825297	.	T	TAC	0	PASS	DP=46;GPV=1;SPV=3.507e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:4,12:2,9:2,3
+chr4	157525468	.	C	A	0	PASS	DP=59;GPV=1;SPV=0.0010012;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:14,4:5,4
+chr4	158429863	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:15,2:8,2
+chr4	159198271	.	CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	C	0	PASS	DP=31;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,5:0,1:7,4
+chr4	159340667	.	CCA	C	0	PASS	DP=31;GPV=1;SPV=0.016809;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:7,2:4,4
+chr4	162333631	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.0012565;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:14,5:9,6
+chr4	162717143	.	T	G	0	PASS	DP=43;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,4:4,2:6,2
+chr4	163590057	.	G	GGTGTGTGTGTGTGTGT	0	PASS	DP=42;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:5,5:5,1
+chr4	163812152	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.002657;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:10,6:12,6
+chr4	164354726	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:13,1:14,3
+chr4	164541450	.	C	T	0	PASS	DP=57;GPV=1;SPV=2.4158e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:8,6:6,5
+chr4	164939267	.	CAAA	C	0	PASS	DP=46;GPV=1;SPV=0.0092274;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:11,26:5,17:6,9
+chr4	165690124	.	C	CTT	0	PASS	DP=23;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,4:0,2:1,2
+chr4	166578529	.	TA	T	0	PASS	DP=51;GPV=1;SPV=0.05848;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,2:3,2:0,0
+chr4	168959565	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:10,2:3,2
+chr4	169892545	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.0027776;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:7,4:2,5
+chr4	170222811	.	G	GGTGT	0	PASS	DP=43;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,10:6,8:1,2
+chr4	170486385	.	A	ATG	0	PASS	DP=22;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,4:1,2:2,2
+chr4	172069553	.	A	ATG	0	PASS	DP=34;GPV=1;SPV=0.0046252;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,2:3,3
+chr4	173497650	.	C	CA	0	PASS	DP=35;GPV=1;SPV=0.0034325;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,6:3,5:2,1
+chr4	173868968	.	G	A	0	PASS	DP=70;GPV=1;SPV=5.9337e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:23,20:12,9:11,11
+chr4	174110292	.	T	C	0	PASS	DP=53;GPV=1;SPV=3.79e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:5,7:6,2
+chr4	174609558	.	C	CTTT	0	PASS	DP=23;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:6,3:3,1
+chr4	175490507	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.0022052;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:10,5:4,3
+chr4	175953008	.	C	T	0	PASS	DP=49;GPV=1;SPV=1.298e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,17:4,10:6,7
+chr4	177184945	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,5:4,4:1,1
+chr4	177184947	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.10784;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,4:5,3:2,1
+chr4	178472657	.	T	TAAA	0	PASS	DP=34;GPV=1;SPV=0.019346;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:7,5:6,3
+chr4	178673782	.	A	ATGTG	0	PASS	DP=31;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,4:5,1
+chr4	178822382	.	GA	G	0	PASS	DP=47;GPV=1;SPV=0.0031364;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:10,3:9,8
+chr4	178822384	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.027568;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:9,3:12,3
+chr4	179450058	.	C	CTT	0	PASS	DP=31;GPV=1;SPV=0.033794;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:3,3:5,2
+chr4	179538614	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.021744;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:11,1:13,4
+chr4	181791460	.	T	A	0	PASS	DP=68;GPV=1;SPV=4.0902e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,16:10,9:6,7
+chr4	181803954	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,2:2,1:3,1
+chr4	185076265	.	TA	T	0	PASS	DP=24;GPV=1;SPV=0.18182;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,2:0,1:3,1
+chr4	185093140	.	CTTT	C	0	PASS	DP=17;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:2,1:2,3
+chr4	185239771	.	TTTC	T	0	PASS	DP=64;GPV=1;SPV=0.004102;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:14,3:12,5
+chr4	185239776	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.034496;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:12,2:9,3
+chr4	186929943	.	C	CAAAAA	0	PASS	DP=53;GPV=1;SPV=0.029503;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,7:12,5:3,2
+chr4	187027218	.	A	ATGTGTGTG	0	PASS	DP=39;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,6:9,5:9,1
+chr4	188130754	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.0040588;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:7,3:8,2
+chr4	189197004	.	T	G	0	PASS	DP=55;GPV=1;SPV=0.0060655;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:10,3:14,6
+chr4	189693572	.	C	CA	0	PASS	DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:6,3:2,2
+chr4	190097105	.	C	T	0	PASS	DP=218;GPV=1;SPV=0.016545;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:82,15:30,8:52,7
+chr4	190108463	.	C	A	0	PASS	DP=300;GPV=1;SPV=0.017876;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:121,17:65,7:56,10
+chr4	190117450	.	G	GT	0	PASS	DP=44;GPV=1;SPV=0.05337;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:10,2:12,4
+chr4	190203701	.	C	T	0	PASS	DP=153;GPV=1;SPV=0.044094;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:57,12:21,4:36,8
+chr5	786736	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:13,5:5,2
+chr5	787732	.	G	A	0	PASS	DP=112;GPV=1;SPV=0.042625;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:47,10:27,4:20,6
+chr5	801057	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.017545;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:16,5:6,5
+chr5	834381	.	C	T	0	PASS	DP=133;GPV=1;SPV=0.031495;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:58,11:32,5:26,6
+chr5	1291685	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:8,4:1,2
+chr5	2925045	.	G	A	0	PASS	DP=67;GPV=1;SPV=4.4743e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:14,7:9,8
+chr5	3067337	.	TTTTC	T	0	PASS	DP=24;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,1:4,5
+chr5	3281558	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:14,2:13,3
+chr5	3660148	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,2:6,2
+chr5	4075662	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:4,3:6,8
+chr5	4111044	.	A	T	0	PASS	DP=65;GPV=1;SPV=7.9674e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:12,20:6,11:6,9
+chr5	4295528	.	AC	A	0	PASS	DP=46;GPV=1;SPV=0.0002482;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:9,4:5,8
+chr5	4435548	.	T	C	0	PASS	DP=47;GPV=1;SPV=8.1326e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:10,13:3,5:7,8
+chr5	7995134	.	A	T	0	PASS	DP=51;GPV=1;SPV=9.3592e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:9,6:5,5
+chr5	8994427	.	A	G	0	PASS	DP=55;GPV=1;SPV=6.9341e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:5,7:11,5
+chr5	9035959	.	C	CA	0	PASS	DP=24;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:2,7:1,6:1,1
+chr5	9724344	.	CTT	C	0	PASS	DP=36;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,11:5,7:4,4
+chr5	11736626	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.021989;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:10,6:18,5
+chr5	13300269	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.0067708;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:7,4:16,3
+chr5	13421330	.	G	C	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr5	13554519	.	CTCCTTCCTTCCTTCCTTCCT	C	0	PASS	DP=27;GPV=1;SPV=0.0018511;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:1,7:0,1:1,6
+chr5	15904349	.	G	T	0	PASS	DP=54;GPV=1;SPV=1.4125e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:6,5:6,6
+chr5	17065219	.	C	A	0	PASS	DP=54;GPV=1;SPV=4.7807e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:7,5:6,5
+chr5	17067679	.	T	A	0	PASS	DP=32;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:0,5:0,2:0,3
+chr5	18035622	.	A	C	0	PASS	DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:11,1:19,3
+chr5	18311530	.	G	T	0	PASS	DP=62;GPV=1;SPV=0.00010063;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:9,7:13,8
+chr5	19382649	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,5:1,1:2,4
+chr5	20463302	.	GA	G	0	PASS	DP=38;GPV=1;SPV=0.00058624;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:6,4:5,7
+chr5	20646319	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.0127;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:5,1:10,7
+chr5	21488938	.	T	A	0	PASS	DP=59;GPV=1;SPV=0.015769;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:16,4:11,3
+chr5	21875683	.	C	A	0	PASS	DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:2,3:7,1
+chr5	22523981	.	AT	A	0	PASS	DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:7,4:2,1
+chr5	24198074	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:6,4:6,4
+chr5	24913764	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:10,3:13,1
+chr5	25117122	.	A	C	0	PASS	DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:10,3:8,1
+chr5	25848929	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.00081542;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:8,5:8,4
+chr5	29310817	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.00029784;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:5,7:6,2
+chr5	30426114	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.032225;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:16,3:8,1
+chr5	30426139	.	AG	A	0	PASS	DP=62;GPV=1;SPV=0.018352;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:13,4:11,1
+chr5	30474110	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.02066;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,5:4,4:2,1
+chr5	30756258	.	A	T	0	PASS	DP=55;GPV=1;SPV=0.0004914;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:7,2:10,7
+chr5	30978445	.	G	GTGTGTATATATATATA	0	PASS	DP=28;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,5:2,1:10,4
+chr5	31577922	.	A	AT	0	PASS	DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:7,1:11,5
+chr5	31684563	.	GT	G	0	PASS	DP=35;GPV=1;SPV=0.00084538;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:5,6:5,5
+chr5	31794393	.	CTT	C	0	PASS	DP=24;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,6:1,5:4,1
+chr5	32330471	.	C	CGTGTGCATGTGTGCACAT	0	PASS	DP=62;GPV=1;SPV=0.0036088;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:7,2:12,9
+chr5	32994567	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.037198;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,5:9,4:1,1
+chr5	34188039	.	C	T	0	PASS	DP=449;GPV=1;SPV=0.0034144;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:237:197,40:101,16:96,24
+chr5	35337023	.	T	G	0	PASS	DP=58;GPV=1;SPV=0.011736;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:10,4:13,2
+chr5	35714680	.	T	TTTTA	0	PASS	DP=52;GPV=1;SPV=0.00062385;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,14:7,10:6,4
+chr5	36663380	.	A	ATTT	0	PASS	DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,2:6,2
+chr5	37392177	.	G	GT	0	PASS	DP=41;GPV=1;SPV=1.3766e-05;SS=2;SSC=48;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,11:3,8:4,3
+chr5	39971756	.	A	T	0	PASS	DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:7,4:8,3
+chr5	40790526	.	T	TC	0	PASS	DP=42;GPV=1;SPV=0.062457;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:7,3:13,2
+chr5	41496627	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,9:10,8:2,1
+chr5	42735836	.	G	C	0	PASS	DP=50;GPV=1;SPV=0.036877;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:6,1:11,7
+chr5	42925502	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,3:2,1:1,2
+chr5	43731181	.	C	CTCT	0	PASS	DP=33;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:2,2:3,3
+chr5	43938390	.	C	T	0	PASS	DP=45;GPV=1;SPV=3.26e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:4,13:2,8:2,5
+chr5	46173991	.	G	T	0	PASS	DP=52;GPV=1;SPV=4.1324e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:3,6:10,5
+chr5	46384061	.	G	A	0	PASS	DP=55;GPV=1;SPV=2.5801e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:8,11:7,2
+chr5	46625466	.	T	A	0	PASS	DP=426;GPV=1;SPV=0.031626;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:204:175,29:80,13:95,16
+chr5	47119184	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:11,3:21,2
+chr5	47119442	.	A	T	0	PASS	DP=38;GPV=1;SPV=0.011316;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:8,4:4,5
+chr5	47141678	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,3:6,1
+chr5	50132477	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr5	50141734	.	T	G	0	PASS	DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:15,3:1,3
+chr5	50142658	.	C	G	0	PASS	DP=266;GPV=1;SPV=0.0086507;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:102,18:63,13:39,5
+chr5	50143548	.	A	T	0	PASS	DP=435;GPV=1;SPV=0.038728;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:201:170,31:72,18:98,13
+chr5	51103574	.	A	T	0	PASS	DP=58;GPV=1;SPV=6.5361e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,13:13,9:5,4
+chr5	52439551	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.037381;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,2:14,2
+chr5	53598043	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:11,3:10,1
+chr5	53601186	.	G	C	0	PASS	DP=48;GPV=1;SPV=0.0027946;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:8,4:10,5
+chr5	53658784	.	C	CA	0	PASS	DP=32;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:8,4:3,1
+chr5	56135351	.	CTTTCT	C	0	PASS	DP=25;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:5,1:4,5
+chr5	56341091	.	G	GT	0	PASS	DP=16;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:3,2:1,2
+chr5	57138557	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,1:0,3
+chr5	57458000	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:1,3:9,6
+chr5	57719698	.	C	G	0	PASS	DP=39;GPV=1;SPV=0.035343;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:11,2:5,3
+chr5	58088476	.	AAT	A	0	PASS	DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:10,3:5,2
+chr5	58625856	.	C	CA	0	PASS	DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,5:6,4
+chr5	62636219	.	GT	G	0	PASS	DP=27;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,6:4,4:0,2
+chr5	63267550	.	C	G	0	PASS	DP=55;GPV=1;SPV=0.035568;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,5:8,3:7,2
+chr5	65223801	.	A	ATT	0	PASS	DP=45;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:15,3:2,1
+chr5	65321738	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.0070913;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:3,4:3,6
+chr5	66259639	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:6,4:7,3
+chr5	66648034	.	ATGTGTGTGTGTGTGTG	A	0	PASS	DP=29;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:8,3:3,1
+chr5	68527167	.	AT	A	0	PASS	DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:11,3:12,2
+chr5	69151114	.	T	TAA	0	PASS	DP=40;GPV=1;SPV=0.0079853;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,6:6,5:6,1
+chr5	69673590	.	A	C	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr5	70081412	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr5	72704906	.	C	CT	0	PASS	DP=38;GPV=1;SPV=0.00026317;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:4,2:4,6
+chr5	73938160	.	C	CCACACACACA	0	PASS	DP=36;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,10:6,6:1,4
+chr5	74503607	.	A	T	0	PASS	DP=49;GPV=1;SPV=0.035604;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,6:10,2:5,4
+chr5	74748880	.	TA	T	0	PASS	DP=41;GPV=1;SPV=0.020407;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:2,3:10,3
+chr5	74914922	.	TGTG	T	0	PASS	DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:9,5:3,3
+chr5	75750741	.	C	CATTCATCTATCTATCT	0	PASS	DP=63;GPV=1;SPV=0.031169;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:14,4:10,6
+chr5	76778462	.	T	A	0	PASS	DP=34;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:2,3:1,2:1,1
+chr5	77225848	.	G	GCA	0	PASS	DP=46;GPV=1;SPV=0.0054795;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:10,5:5,5
+chr5	77794886	.	GC	G	0	PASS	DP=35;GPV=1;SPV=0.0014231;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:5,3:1,2
+chr5	78768352	.	C	CTTTTTTTTTTTCT	0	PASS	DP=34;GPV=1;SPV=0.024462;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:4,2:6,2
+chr5	80178537	.	A	ATT	0	PASS	DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,4:1,3:2,1
+chr5	80182555	.	CT	C	0	PASS	DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:0,0:6,4
+chr5	80738651	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.0015905;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:10,4:6,3
+chr5	81618308	.	T	C	0	PASS	DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:3,1:4,4
+chr5	81798603	.	G	GCA	0	PASS	DP=34;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,4:7,3:4,1
+chr5	82186593	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:1,2:0,0:1,2
+chr5	82473017	.	TATATATTATC	T	0	PASS	DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:3,2:4,2
+chr5	82473099	.	TTATAA	T	0	PASS	DP=44;GPV=1;SPV=0.0078894;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:4,2:9,3
+chr5	82979395	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,2:7,2:0,0
+chr5	85103160	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.014907;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:7,5:3,4:4,1
+chr5	85555745	.	C	CTATATATATA	0	PASS	DP=24;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,4:2,3:2,1
+chr5	85980904	.	C	CAAA	0	PASS	DP=29;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,5:2,4:3,1
+chr5	86041764	.	CTT	C	0	PASS	DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,1:5,3
+chr5	94847684	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.11053;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,2:1,1:4,1
+chr5	96954713	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,1:6,3
+chr5	98280732	.	G	GGATAGATAGATA	0	PASS	DP=45;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,6:6,3:3,3
+chr5	98911146	.	A	AATATATAT	0	PASS	DP=27;GPV=1;SPV=0.047431;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:3,2:2,2
+chr5	98996250	.	C	T	0	PASS	DP=60;GPV=1;SPV=4.4713e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,14:6,6:9,8
+chr5	102138395	.	C	CAAAA	0	PASS	DP=35;GPV=1;SPV=0.04308;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:5,3:4,2
+chr5	103865661	.	G	GGTGTGT	0	PASS	DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:12,3:7,2
+chr5	107659496	.	CT	C	0	PASS	DP=32;GPV=1;SPV=0.0012716;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,11:2,6:4,5
+chr5	109202422	.	ATG	A	0	PASS	DP=44;GPV=1;SPV=0.042283;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:13,3:7,1:6,2
+chr5	109342265	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,3:4,1
+chr5	110524408	.	AAAG	A	0	PASS	DP=51;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,5:9,2:4,3
+chr5	112889829	.	A	ATT	0	PASS	DP=43;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,8:1,4:3,4
+chr5	114236398	.	T	TAATTCAATTAC	0	PASS	DP=43;GPV=1;SPV=0.018956;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,3:6,4
+chr5	114891042	.	G	A	0	PASS	DP=63;GPV=1;SPV=1.7528e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,18:9,12:8,6
+chr5	116688375	.	G	GTATC	0	PASS	DP=26;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,2:0,0:4,2
+chr5	117585075	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.004119;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,8:4,7:3,1
+chr5	117638790	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.098039;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:4,2:2,1:2,1
+chr5	118850309	.	CA	C	0	PASS	DP=36;GPV=1;SPV=2.8354e-05;SS=2;SSC=45;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:2,8:3,1
+chr5	119894971	.	G	GGTGT	0	PASS	DP=41;GPV=1;SPV=0.0079383;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,8:6,4:3,4
+chr5	120518564	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:6,5:5,6
+chr5	121493096	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.020557;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,6:5,4:5,2
+chr5	122461669	.	GT	G	0	PASS	DP=36;GPV=1;SPV=0.00027871;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,7:2,4:2,3
+chr5	125196155	.	C	G	0	PASS	DP=44;GPV=1;SPV=0.024679;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,3:5,3
+chr5	125276936	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.0013275;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:7,4:5,2
+chr5	126517357	.	A	ATT	0	PASS	DP=29;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,10:3,8:1,2
+chr5	126954199	.	A	AT	0	PASS	DP=43;GPV=1;SPV=0.0091635;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,8:11,6:6,2
+chr5	127921100	.	A	AAGGAAAGGAGAAAGGAG	0	PASS	DP=33;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:8,3:9,1
+chr5	129498798	.	AT	A	0	PASS	DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,2:11,2
+chr5	129816647	.	A	ACG	0	PASS	DP=49;GPV=1;SPV=0.019748;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:6,8:11,3
+chr5	130083941	.	T	G	0	PASS	DP=55;GPV=1;SPV=0.02651;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:15,2:12,5
+chr5	132123273	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:7,6:4,1
+chr5	134544329	.	T	C	0	PASS	DP=76;GPV=1;SPV=5.2583e-10;SS=2;SSC=92;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:13,20:3,9:10,11
+chr5	134594308	.	T	C	0	PASS	DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:1,2:7,5
+chr5	135093687	.	T	TTGTGTGTGTGTGTG	0	PASS	DP=35;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:6,7:7,1
+chr5	136046402	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.0019282;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:9,6:10,1
+chr5	136048771	.	G	T	0	PASS	DP=68;GPV=1;SPV=0.00091602;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:11,5:9,2
+chr5	136723206	.	T	C	0	PASS	DP=22;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,3:3,1:2,2
+chr5	137065227	.	C	CAAA	0	PASS	DP=32;GPV=1;SPV=0.36264;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,4:3,3:5,1
+chr5	137473356	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.00073711;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:12,5:6,4
+chr5	138195699	.	G	GTA	0	PASS	DP=26;GPV=1;SPV=0.040316;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:1,2:4,2
+chr5	141792627	.	C	CAAAAAA	0	PASS	DP=32;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,5:7,4:4,1
+chr5	144278485	.	C	CTT	0	PASS	DP=28;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,8:2,7:6,1
+chr5	145152125	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.0217;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:3,4:6,2
+chr5	146271565	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.00029342;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:5,5:12,4
+chr5	146271566	.	A	T	0	PASS	DP=56;GPV=1;SPV=9.1801e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:4,4:11,6
+chr5	146989276	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:9,3:12,1
+chr5	147027634	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,7:5,4:3,3
+chr5	147249908	.	C	CA	0	PASS	DP=23;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:5,4:2,1
+chr5	147604800	.	TTTA	T	0	PASS	DP=46;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,9:3,4:10,5
+chr5	149809275	.	A	C	0	PASS	DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:10,3:6,3
+chr5	151238956	.	T	C	0	PASS	DP=63;GPV=1;SPV=0.11088;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:19,1:14,3
+chr5	151384249	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:9,4:13,3
+chr5	152714933	.	G	A	0	PASS	DP=48;GPV=1;SPV=7.4643e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:8,8:5,4
+chr5	153648838	.	A	AC	0	PASS	DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:11,1:4,9
+chr5	155108106	.	C	A	0	PASS	DP=65;GPV=1;SPV=1.5408e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:7,5:14,12
+chr5	156631460	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:8,6:4,1
+chr5	157064339	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.019016;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,6:9,4:4,2
+chr5	157448096	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr5	158502028	.	GTA	G	0	PASS	DP=42;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,8:7,2:8,6
+chr5	158586147	.	C	G	0	PASS	DP=49;GPV=1;SPV=0.15441;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:5,2:1,1:4,1
+chr5	160063966	.	C	CTTT	0	PASS	DP=22;GPV=1;SPV=0.004662;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,5:0,4:0,1
+chr5	160075805	.	TA	T	0	PASS	DP=25;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,6:3,4:3,2
+chr5	160249765	.	AAAATAAATAAATAAATAAAT	A	0	PASS	DP=38;GPV=1;SPV=0.0093762;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:5,3:6,5
+chr5	161177701	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.00048277;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:4,3:8,5
+chr5	161700455	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:14,2:19,4
+chr5	163329002	.	ACACACACACACACACACACATC	A	0	PASS	DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,4:3,2
+chr5	164428259	.	A	G	0	PASS	DP=72;GPV=1;SPV=0.00116;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:16,5:9,3
+chr5	165866760	.	A	C	0	PASS	DP=51;GPV=1;SPV=7.4709e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,14:4,4:8,10
+chr5	166426334	.	ATTT	A	0	PASS	DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:8,4:1,4
+chr5	167070107	.	A	ATATTTATTTATT	0	PASS	DP=28;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,7:1,4:2,3
+chr5	168334430	.	C	A	0	PASS	DP=49;GPV=1;SPV=0.0022813;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:11,6:7,3
+chr5	169328955	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:9,5:12,2
+chr5	170918403	.	T	TACACACACAC	0	PASS	DP=47;GPV=1;SPV=0.016633;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:10,6:7,3
+chr5	171276918	.	TAA	T	0	PASS	DP=30;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,6:3,5:2,1
+chr5	171339649	.	AT	A	0	PASS	DP=54;GPV=1;SPV=0.00024587;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:4,2:11,7
+chr5	172223586	.	CAAAAAAAA	C	0	PASS	DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:6,3:1,1
+chr5	172610316	.	G	GCACACACACACACA	0	PASS	DP=32;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:4,5:5,2
+chr5	174382247	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:5,4:6,4
+chr5	174818008	.	G	GGTGTGTGTGTGTGTGTGT	0	PASS	DP=30;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:6,3:7,1
+chr5	175874420	.	G	A	0	PASS	DP=58;GPV=1;SPV=1.0986e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,15:7,7:3,8
+chr5	175999344	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:3,5:5,1
+chr5	176628407	.	C	T	0	PASS	DP=55;GPV=1;SPV=6.6996e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:5,6:4,6
+chr5	177854131	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.025973;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:6,5:16,1
+chr5	178530930	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.044629;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:14,3:15,1
+chr5	178804228	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.0083519;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:5,8:4,1
+chr5	178823181	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.0012285;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:9,6:2,2
+chr5	179156359	.	A	AT	0	PASS	DP=35;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,10:7,6:4,4
+chr5	179510765	.	C	CA	0	PASS	DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:0,3:4,1
+chr5	180360305	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.0094281;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:12,1:11,4
+chr5	180617169	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.093333;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr6	2326994	.	TATATA	T	0	PASS	DP=36;GPV=1;SPV=0.39766;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,4:7,3:6,1
+chr6	5007386	.	A	C	0	PASS	DP=46;GPV=1;SPV=0.024548;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:10,3:8,2
+chr6	5176066	.	A	AGT	0	PASS	DP=59;GPV=1;SPV=0.0028726;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,15:10,11:9,4
+chr6	7021565	.	TTG	T	0	PASS	DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:9,3:5,3
+chr6	7021611	.	A	AC	0	PASS	DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:3,3:6,3
+chr6	7933569	.	CT	C	0	PASS	DP=32;GPV=1;SPV=0.027836;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,3:3,1
+chr6	8567024	.	T	C	0	PASS	DP=36;GPV=1;SPV=0.016203;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:8,1:7,7
+chr6	9525052	.	AAAAAAC	A	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,3:2,1
+chr6	9676581	.	C	G	0	PASS	DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:8,1:8,7
+chr6	13409149	.	G	GAA	0	PASS	DP=32;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,5:4,1:0,4
+chr6	13409930	.	AAAAAAAAAAAG	A	0	PASS	DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,8:4,1:0,7
+chr6	14858616	.	T	A	0	PASS	DP=19;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,3:2,1:3,2
+chr6	14989974	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:6,6:11,4
+chr6	15980662	.	A	C	0	PASS	DP=32;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,2:3,1:2,1
+chr6	17493775	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.0094843;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,11:6,7:3,4
+chr6	18887884	.	TGG	T	0	PASS	DP=38;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,2:1,1:2,1
+chr6	18929526	.	G	GTACATATACATA	0	PASS	DP=41;GPV=1;SPV=0.035015;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:4,1:5,4
+chr6	19174803	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.0029252;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:3,7:6,5
+chr6	19613513	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.00019519;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:11,4:8,7
+chr6	19787417	.	A	ATT	0	PASS	DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:3,4:4,1
+chr6	19810897	.	TTA	T	0	PASS	DP=63;GPV=1;SPV=0.11088;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:17,3:16,1
+chr6	21114247	.	CAAAA	C	0	PASS	DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,1:2,3
+chr6	22371326	.	G	T	0	PASS	DP=50;GPV=1;SPV=0.00034904;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:9,8:7,3
+chr6	22608659	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:18,4:12,1
+chr6	22849274	.	A	ATGTGTG	0	PASS	DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:3,5:6,2
+chr6	22980709	.	C	T	0	PASS	DP=55;GPV=1;SPV=9.2147e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:8,8:6,6
+chr6	23288756	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,3:2,2:4,1
+chr6	23288758	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,3:2,2:4,1
+chr6	26440809	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:9,2:15,2
+chr6	27485579	.	CG	C	0	PASS	DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:16,1:10,3
+chr6	27567279	.	T	TAAAA	0	PASS	DP=27;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:7,3:4,1
+chr6	27718696	.	CA	C	0	PASS	DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:14,1:8,3
+chr6	27764016	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,2:7,2
+chr6	28808465	.	C	G	0	PASS	DP=49;GPV=1;SPV=0.00026518;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:8,3:7,8
+chr6	29123667	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:10,3:15,2
+chr6	29317941	.	G	GTA	0	PASS	DP=35;GPV=1;SPV=0.023879;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:12,5:2,1
+chr6	30022323	.	A	C	0	PASS	DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,1:4,3
+chr6	30135216	.	C	CA	0	PASS	DP=21;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,8:1,6:1,2
+chr6	30373939	.	CTTCT	C	0	PASS	DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:1,1:6,4
+chr6	31619069	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:10,1:6,3
+chr6	32392502	.	A	AG	0	PASS	DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:4,4:2,1
+chr6	33556655	.	T	TTG	0	PASS	DP=28;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:5,2:5,2
+chr6	34840391	.	T	TA	0	PASS	DP=28;GPV=1;SPV=0.015182;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:3,3:2,2
+chr6	34850013	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.0034865;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:12,4:7,4
+chr6	34991735	.	TATATATAC	T	0	PASS	DP=29;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:4,3:4,1
+chr6	35273722	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:7,8:3,1
+chr6	36933211	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:10,4:12,5
+chr6	38830634	.	CAA	C	0	PASS	DP=23;GPV=1;SPV=0.004902;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:0,2:2,2
+chr6	38873770	.	C	A	0	PASS	DP=47;GPV=1;SPV=0.018307;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:5,6:1,3:4,3
+chr6	39979558	.	G	A	0	PASS	DP=52;GPV=1;SPV=7.8332e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,13:8,8:1,5
+chr6	41440255	.	G	T	0	PASS	DP=29;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,5:4,3:3,2
+chr6	41568407	.	T	C	0	PASS	DP=60;GPV=1;SPV=1.1994e-09;SS=2;SSC=89;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:9,23:6,12:3,11
+chr6	41650573	.	C	CTTT	0	PASS	DP=30;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,7:2,3:3,4
+chr6	44642499	.	C	T	0	PASS	DP=42;GPV=1;SPV=0.00037668;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:8,3:3,6
+chr6	45302467	.	C	CAT	0	PASS	DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:1,4:3,2
+chr6	46072236	.	GA	G	0	PASS	DP=22;GPV=1;SPV=0.00021109;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:2,7:2,6:0,1
+chr6	46332313	.	A	AT	0	PASS	DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:2,3:10,2
+chr6	48366126	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:10,3:14,1
+chr6	48897335	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.049719;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:21,2:11,4
+chr6	50424202	.	C	G	0	PASS	DP=65;GPV=1;SPV=2.1474e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:9,7:9,5
+chr6	50810018	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:6,3:7,3
+chr6	51101673	.	C	G	0	PASS	DP=58;GPV=1;SPV=0.033473;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:13,5:8,1
+chr6	54317392	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.044429;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:12,3:11,1
+chr6	54809924	.	C	CAAGAAAGA	0	PASS	DP=27;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:6,4:5,1
+chr6	57845096	.	C	T	0	PASS	DP=46;GPV=1;SPV=3.4748e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,12:4,6:7,6
+chr6	58216143	.	CA	C	0	PASS	DP=41;GPV=1;SPV=0.00034756;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,12:5,10:2,2
+chr6	58236748	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.0018544;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:5,7:11,2
+chr6	58406214	.	C	A	0	PASS	DP=56;GPV=1;SPV=0.034441;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:12,1:9,3
+chr6	58407963	.	T	TTTTATTTATTTATTTATTTATTTA	0	PASS	DP=38;GPV=1;SPV=0.0079853;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:5,4:7,2
+chr6	60275841	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.03973;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:7,5:12,2
+chr6	61316474	.	G	T	0	PASS	DP=65;GPV=1;SPV=4.3478e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:10,3:7,11
+chr6	63259044	.	A	C	0	PASS	DP=57;GPV=1;SPV=0.065934;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:2,2:1,1:1,1
+chr6	63600781	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.0079864;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:6,4:3,3
+chr6	63834638	.	C	G	0	PASS	DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:4,3:11,1
+chr6	63863664	.	TTTTCTTTTTTC	T	0	PASS	DP=26;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,4:3,3:4,1
+chr6	65649137	.	C	CA	0	PASS	DP=30;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:8,4:3,2
+chr6	66722997	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,2:2,1:3,1
+chr6	66761648	.	CATACAT	C	0	PASS	DP=38;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:6,2:6,6
+chr6	67787159	.	G	C	0	PASS	DP=16;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:2,6:2,5:0,1
+chr6	67827667	.	A	G	0	PASS	DP=63;GPV=1;SPV=1.9702e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,13:8,5:10,8
+chr6	67947687	.	G	A	0	PASS	DP=62;GPV=1;SPV=3.1551e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:17,17:10,11:7,6
+chr6	68956303	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.013165;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:6,5:16,4
+chr6	70234303	.	AC	A	0	PASS	DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:7,1:13,3
+chr6	70637218	.	C	CA	0	PASS	DP=44;GPV=1;SPV=0.03818;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:8,4:5,1
+chr6	71020944	.	G	GCGCA	0	PASS	DP=47;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,5:6,3:14,2
+chr6	72411671	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.010126;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:15,2:7,5
+chr6	73124976	.	TATATACACAC	T	0	PASS	DP=20;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,4:0,1:2,3
+chr6	74276896	.	A	G	0	PASS	DP=60;GPV=1;SPV=0.041988;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,2:11,2
+chr6	75326112	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:12,2:8,2
+chr6	75735448	.	C	CTCTCTCTCTATATATA	0	PASS	DP=42;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,4:4,2:12,2
+chr6	76386785	.	C	CAAA	0	PASS	DP=47;GPV=1;SPV=0.0020034;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,12:8,8:5,4
+chr6	77097105	.	C	T	0	PASS	DP=51;GPV=1;SPV=2.8475e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,16:5,8:4,8
+chr6	77520751	.	GA	G	0	PASS	DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:6,6:1,3
+chr6	78788156	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,3:0,2:0,1
+chr6	79739208	.	TGTGTTA	T	0	PASS	DP=57;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,8:4,4:7,4
+chr6	81387847	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.0031585;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:9,1:5,5
+chr6	82559691	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:2,5:6,4
+chr6	82723481	.	CA	C	0	PASS	DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:9,2:10,2
+chr6	84350069	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.00012326;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,5:5,4
+chr6	84630361	.	C	G	0	PASS	DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:4,1:7,5
+chr6	85263223	.	T	TATACACATATACATATATAC	0	PASS	DP=35;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,4:1,1:4,3
+chr6	85799173	.	A	AT	0	PASS	DP=42;GPV=1;SPV=0.018226;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:11,4:4,1
+chr6	85918931	.	C	A	0	PASS	DP=75;GPV=1;SPV=1.7286e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:12,5:8,6
+chr6	86617490	.	TATATATATATAG	T	0	PASS	DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,1:5,3
+chr6	86743844	.	TG	T	0	PASS	DP=41;GPV=1;SPV=0.018478;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:7,2:3,3
+chr6	89242667	.	C	A	0	PASS	DP=46;GPV=1;SPV=0.030475;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:6,3:6,3
+chr6	90213726	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.0015295;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:8,6:11,6
+chr6	91843111	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.03297;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:9,4:15,2
+chr6	92250287	.	ATG	A	0	PASS	DP=44;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,5:4,3:5,2
+chr6	92413584	.	AT	A	0	PASS	DP=49;GPV=1;SPV=0.00024826;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,9:3,6:3,3
+chr6	92643495	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.00012488;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:6,4:6,6
+chr6	93624766	.	A	AGG	0	PASS	DP=30;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:5,6:4,1
+chr6	94088690	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.027862;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:15,4:5,1
+chr6	94711582	.	G	T	0	PASS	DP=22;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,3:5,1
+chr6	95601716	.	ATTT	A	0	PASS	DP=21;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,5:1,2:4,3
+chr6	96315368	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.0003269;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:12,6:5,6
+chr6	96711141	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,4:5,3:2,1
+chr6	97660619	.	T	TTC	0	PASS	DP=47;GPV=1;SPV=0.0001711;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,13:4,10:4,3
+chr6	98939075	.	C	CA	0	PASS	DP=26;GPV=1;SPV=0.011858;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:5,4:0,0
+chr6	99095148	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:7,2:4,1:3,1
+chr6	101109446	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:1,2:1,1:0,1
+chr6	101109450	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:4,2:3,1:1,1
+chr6	101133838	.	C	T	0	PASS	DP=63;GPV=1;SPV=8.3997e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:14,21:7,12:7,9
+chr6	102572805	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.00041713;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,6:3,5:2,1
+chr6	102720122	.	A	AT	0	PASS	DP=59;GPV=1;SPV=4.8311e-06;SS=2;SSC=53;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:7,3:5,8
+chr6	103955036	.	G	A	0	PASS	DP=51;GPV=1;SPV=4.0733e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:6,7:4,5
+chr6	105521621	.	A	AT	0	PASS	DP=69;GPV=1;SPV=3.8197e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,13:8,6:14,7
+chr6	107499161	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.0035067;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:12,2:8,6
+chr6	107863971	.	CGT	C	0	PASS	DP=23;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:7,5:1,1
+chr6	107931487	.	A	T	0	PASS	DP=48;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:1,2:0,1:1,1
+chr6	108718547	.	C	CTCTCGT	0	PASS	DP=35;GPV=1;SPV=0.0072348;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,6:2,3:2,3
+chr6	109409579	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,5:2,2:8,3
+chr6	109417385	.	T	A	0	PASS	DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:1,2:0,0:1,2
+chr6	109437548	.	CTTT	C	0	PASS	DP=19;GPV=1;SPV=0.0048077;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,5:1,3:1,2
+chr6	109822797	.	A	G	0	PASS	DP=30;GPV=1;SPV=0.0058007;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,8:2,5:1,3
+chr6	110350762	.	CAAAAT	C	0	PASS	DP=46;GPV=1;SPV=0.00038136;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:3,6:3,2
+chr6	113069811	.	C	G	0	PASS	DP=58;GPV=1;SPV=3.066e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,16:2,9:5,7
+chr6	113589996	.	AG	A	0	PASS	DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:7,2:4,3
+chr6	114750491	.	C	CTT	0	PASS	DP=24;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,8:0,4:3,4
+chr6	115825428	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:8,4:0,1
+chr6	118827497	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.0065856;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:11,5:8,2
+chr6	120460510	.	GTTATTTTATTTTATTTTATTTTATT	G	0	PASS	DP=28;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:1,6:6,4
+chr6	120532901	.	CA	C	0	PASS	DP=24;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,6:5,5:3,1
+chr6	121355893	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,9:11,7:5,2
+chr6	122846726	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:2,2:2,2:0,0
+chr6	123445642	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:5,1:5,6
+chr6	125029781	.	A	G	0	PASS	DP=56;GPV=1;SPV=2.7317e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:8,22:6,9:2,13
+chr6	125788698	.	A	ATTTTTTT	0	PASS	DP=37;GPV=1;SPV=0.0012917;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,3:4,3
+chr6	126816648	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,1:5,2
+chr6	127501003	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:10,4:8,3
+chr6	128493560	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:15,1:5,3
+chr6	128637917	.	GTTTTTT	G	0	PASS	DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,4:3,2:3,2
+chr6	130504622	.	A	AT	0	PASS	DP=45;GPV=1;SPV=0.0015456;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,13:9,10:1,3
+chr6	130680465	.	CTTTTTTTTT	C	0	PASS	DP=21;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,5:1,1:2,4
+chr6	131727555	.	CA	C	0	PASS	DP=36;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:8,6:3,1
+chr6	132442627	.	C	T	0	PASS	DP=55;GPV=1;SPV=0.0012081;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:11,1:5,6
+chr6	132489200	.	T	TA	0	PASS	DP=28;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,7:4,5:4,2
+chr6	132505739	.	T	TAA	0	PASS	DP=28;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,10:3,8:6,2
+chr6	132757997	.	A	T	0	PASS	DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:4,5:3,4
+chr6	133394291	.	T	A	0	PASS	DP=26;GPV=1;SPV=0.069231;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:4,2:1,2
+chr6	133792776	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.0082071;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:5,3:8,4
+chr6	133948660	.	A	AAC	0	PASS	DP=34;GPV=1;SPV=0.0039459;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:5,6:2,1
+chr6	134180871	.	CA	C	0	PASS	DP=39;GPV=1;SPV=0.0052761;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:9,8:2,2
+chr6	134232429	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,8:8,2:0,6
+chr6	134497927	.	C	CAA	0	PASS	DP=27;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:5,4:0,0
+chr6	135173464	.	C	G	0	PASS	DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:6,2:11,3
+chr6	136744502	.	A	G	0	PASS	DP=52;GPV=1;SPV=3.1333e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:3,8:7,4
+chr6	137898140	.	C	CA	0	PASS	DP=57;GPV=1;SPV=8.1928e-06;SS=2;SSC=50;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:7,5:7,8
+chr6	138437361	.	TATATATATATACAC	T	0	PASS	DP=22;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:3,2:6,3
+chr6	138873898	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:3,3:9,2
+chr6	139243492	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:5,4:5,5
+chr6	139845378	.	C	CTTT	0	PASS	DP=21;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,8:3,5:1,3
+chr6	140361223	.	TTGTGTGTGTG	T	0	PASS	DP=25;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,7:1,3:3,4
+chr6	141571986	.	G	T	0	PASS	DP=36;GPV=1;SPV=0.001096;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:2,4:2,3
+chr6	141644789	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,3:3,1:1,2
+chr6	141919119	.	C	G	0	PASS	DP=26;GPV=1;SPV=0.0070234;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,1:3,4
+chr6	142067416	.	A	T	0	PASS	DP=58;GPV=1;SPV=1.2584e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,15:7,6:6,9
+chr6	142801413	.	CAA	C	0	PASS	DP=23;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:2,3:3,2
+chr6	144290752	.	CTTTTT	C	0	PASS	DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:3,3:2,2
+chr6	144635138	.	GT	G	0	PASS	DP=29;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,9:5,8:2,1
+chr6	145242149	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:0,4:0,2:0,2
+chr6	146818579	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:2,3:4,1
+chr6	147666774	.	C	T	0	PASS	DP=60;GPV=1;SPV=1.1994e-09;SS=2;SSC=89;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:9,23:6,12:3,11
+chr6	148308274	.	G	GCC	0	PASS	DP=46;GPV=1;SPV=0.020196;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,5:9,1:5,4
+chr6	149253958	.	AAAAGAAAG	A	0	PASS	DP=30;GPV=1;SPV=0.0010096;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:4,11:2,5:2,6
+chr6	149476819	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.04522;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:12,2:9,4
+chr6	150483588	.	A	C	0	PASS	DP=18;GPV=1;SPV=0.0016865;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:1,8:1,3:0,5
+chr6	150483601	.	T	C	0	PASS	DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,2:3,2
+chr6	150688939	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.0073497;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:14,4:6,5
+chr6	150700933	.	ATAGCTTGTAT	A	0	PASS	DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:4,4:7,4
+chr6	150700945	.	GCTTTATTTCCCATATTTGGGTTA	G	0	PASS	DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:6,4:4,4
+chr6	150968807	.	GC	G	0	PASS	DP=42;GPV=1;SPV=1.8763e-06;SS=2;SSC=57;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:3,13:0,5:3,8
+chr6	151605903	.	T	A	0	PASS	DP=31;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:2,2:2,1:0,1
+chr6	151852639	.	G	GTTT	0	PASS	DP=27;GPV=1;SPV=0.016983;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,9:1,5:0,4
+chr6	152364686	.	G	GAGGA	0	PASS	DP=42;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,4:11,3:4,1
+chr6	153185637	.	C	CTTT	0	PASS	DP=21;GPV=1;SPV=0.004995;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,4:1,3:0,1
+chr6	153963149	.	TTCTTCTTCTTCTTCTTCTTCTTCCTTC	T	0	PASS	DP=24;GPV=1;SPV=0.0045767;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:5,4:0,2
+chr6	154003721	.	C	CAA	0	PASS	DP=27;GPV=1;SPV=0.00761;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:2,7:1,5:1,2
+chr6	154740625	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.027751;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:4,2:5,3
+chr6	155742675	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.035158;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:9,7:8,1
+chr6	157122423	.	T	A	0	PASS	DP=67;GPV=1;SPV=0.0047599;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:14,3:9,3
+chr6	157263058	.	C	T	0	PASS	DP=57;GPV=1;SPV=7.881e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,15:5,6:7,9
+chr6	157730215	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:3,3:1,2:2,1
+chr6	158978725	.	G	C	0	PASS	DP=53;GPV=1;SPV=4.9545e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:8,16:3,7:5,9
+chr6	159547211	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:1,1:5,5
+chr6	159654588	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.018966;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,6:5,5:6,1
+chr6	160576410	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:0,3:0,1:0,2
+chr6	160932467	.	T	G	0	PASS	DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:17,1:10,3
+chr6	161443896	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:8,4:10,5
+chr6	161568972	.	T	TA	0	PASS	DP=53;GPV=1;SPV=0.0035931;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,7:9,3:9,4
+chr6	162650315	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.01064;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:8,2:10,3
+chr6	163846289	.	GTT	G	0	PASS	DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:5,6:1,2
+chr6	163917572	.	A	C	0	PASS	DP=66;GPV=1;SPV=2.0747e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:11,4:10,11
+chr6	164777257	.	T	C	0	PASS	DP=61;GPV=1;SPV=2.979e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:6,6:11,6
+chr6	165890076	.	A	C	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:2,1:4,1
+chr6	166942058	.	C	CTTTTTTTTTT	0	PASS	DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:3,5:1,1
+chr6	167175552	.	G	A	0	PASS	DP=84;GPV=1;SPV=0.043127;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:21,3:9,2
+chr6	167178468	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.0078321;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:13,6:11,7
+chr6	167390528	.	C	G	0	PASS	DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:5,1:12,3
+chr6	167660804	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.00035539;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:9,4:6,5
+chr6	167785661	.	CAA	C	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,3:4,1
+chr6	168088144	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.00033054;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:14,2:10,8
+chr6	168610977	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.01301;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:8,2:2,4
+chr6	169900320	.	GA	G	0	PASS	DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,3:5,1
+chr6	170394572	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.029105;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:8,7:14,1
+chr6	170708298	.	T	G	0	PASS	DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:0,1:4,4
+chr7	35473	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,5:6,3:9,2
+chr7	133047	.	CTGT	C	0	PASS	DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:10,2:8,2
+chr7	1327470	.	CA	C	0	PASS	DP=44;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,6:10,4:7,2
+chr7	1996232	.	T	TC	0	PASS	DP=43;GPV=1;SPV=0.047956;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:4,4:9,1
+chr7	2867457	.	CCTCT	C	0	PASS	DP=42;GPV=1;SPV=0.0029185;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,10:5,9:4,1
+chr7	2943771	.	A	G	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chr7	3213222	.	CAAAAA	C	0	PASS	DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:4,4:2,1
+chr7	3269884	.	G	GGAAGGAAGGAAGGAAGGAAGGAAC	0	PASS	DP=33;GPV=1;SPV=0.024799;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,5:3,4:6,1
+chr7	3299677	.	A	AGCTGCTGCTGCTGCTGCTGCTGCTGCT	0	PASS	DP=41;GPV=1;SPV=0.003311;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:3,2:8,7
+chr7	3992327	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:12,1:21,3
+chr7	4965431	.	C	CA	0	PASS	DP=35;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:6,5:3,2
+chr7	5905902	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,3:4,3
+chr7	6731469	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,5:3,4:2,1
+chr7	6743760	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:15,2:8,2
+chr7	8078208	.	T	TAAA	0	PASS	DP=22;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,5:4,4:2,1
+chr7	8787468	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:7,3:12,1
+chr7	9006021	.	T	TCACACACACACACACA	0	PASS	DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:4,3:7,3
+chr7	9586159	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.023839;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:6,6:2,3:4,3
+chr7	11643605	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.096304;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:16,3:18,1
+chr7	15564057	.	GT	G	0	PASS	DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:7,5:4,1
+chr7	16056810	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:12,4:4,5
+chr7	16478728	.	CT	C	0	PASS	DP=43;GPV=1;SPV=0.0083111;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:13,5:5,4
+chr7	21178080	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.00050723;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:6,9:5,4
+chr7	22526566	.	TAAAAAAAAAAAAAA	T	0	PASS	DP=17;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:2,3:3,1
+chr7	22732290	.	TGTGTATATATA	T	0	PASS	DP=36;GPV=1;SPV=0.016761;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:6,3:6,3
+chr7	24215816	.	T	A	0	PASS	DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:8,2:3,2
+chr7	24500287	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,8:1,4:2,4
+chr7	24953942	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.00019158;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,17:7,7:6,10
+chr7	25581638	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.0074546;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:7,6:8,4
+chr7	26353459	.	T	G	0	PASS	DP=24;GPV=1;SPV=0.006865;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:2,2:1,3
+chr7	27705391	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.0075692;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:4,1:7,7
+chr7	28232988	.	C	G	0	PASS	DP=54;GPV=1;SPV=9.3485e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:10,20:5,10:5,10
+chr7	28912826	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,2:2,1:4,1
+chr7	29002866	.	C	CA	0	PASS	DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:5,6:3,1
+chr7	29688843	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.15352;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:15,3:16,1
+chr7	30486877	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.044477;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:0,0:12,4
+chr7	31212749	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,4:7,3:6,1
+chr7	32084709	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.040404;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,3:6,1
+chr7	32112846	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.02037;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:1,2:8,3
+chr7	32511548	.	A	T	0	PASS	DP=58;GPV=1;SPV=2.6068e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:8,9:6,6
+chr7	33048178	.	G	T	0	PASS	DP=58;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:6,2:5,1:1,1
+chr7	33196467	.	T	G	0	PASS	DP=53;GPV=1;SPV=1.2409e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:5,6:9,9
+chr7	34327969	.	T	A	0	PASS	DP=59;GPV=1;SPV=0.0098662;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:13,6:12,1
+chr7	34652637	.	T	TTAAAATAAAATAAAATAAAATAAAATAAAA	0	PASS	DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:8,2:11,2
+chr7	36126869	.	G	A	0	PASS	DP=56;GPV=1;SPV=1.7296e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:6,8:8,4
+chr7	37794892	.	A	AT	0	PASS	DP=29;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,4:4,3:4,1
+chr7	38498811	.	C	A	0	PASS	DP=45;GPV=1;SPV=2.7873e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,13:4,8:4,5
+chr7	39050234	.	G	T	0	PASS	DP=58;GPV=1;SPV=0.017618;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:13,3:9,2
+chr7	39559112	.	C	CTGTG	0	PASS	DP=34;GPV=1;SPV=0.013615;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:5,3:2,4
+chr7	40953503	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.0087781;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:12,6:11,1
+chr7	43898788	.	AATTT	A	0	PASS	DP=64;GPV=1;SPV=0.0072753;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:15,13:8,10:7,3
+chr7	43963446	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:10,2:13,2
+chr7	46616809	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.00090437;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:5,6:14,5
+chr7	47766843	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.024476;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:2,8:0,2:2,6
+chr7	48051347	.	A	ATTTTT	0	PASS	DP=17;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,5:1,2:0,3
+chr7	48309033	.	G	GCACACACACA	0	PASS	DP=40;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:9,5:2,5
+chr7	49379798	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.0023233;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,13:8,8:4,5
+chr7	51943328	.	A	G	0	PASS	DP=62;GPV=1;SPV=8.0475e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:4,9:11,3
+chr7	52260968	.	G	GT	0	PASS	DP=66;GPV=1;SPV=0.00012013;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:9,3:12,8
+chr7	52260971	.	T	C	0	PASS	DP=72;GPV=1;SPV=2.3095e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:8,4:13,8
+chr7	54494984	.	A	C	0	PASS	DP=65;GPV=1;SPV=0.13498;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:21,2:15,2
+chr7	54640948	.	CA	C	0	PASS	DP=37;GPV=1;SPV=0.045571;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:13,4:3,3
+chr7	56526422	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.024581;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:14,3:13,3
+chr7	56596547	.	CA	C	0	PASS	DP=28;GPV=1;SPV=0.0045549;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:3,4:4,2
+chr7	56621678	.	C	A	0	PASS	DP=70;GPV=1;SPV=4.8683e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:10,6:13,7
+chr7	56801360	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:15,1:12,3
+chr7	56814006	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:4,2:12,3
+chr7	56883052	.	G	C	0	PASS	DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,1:7,3
+chr7	57108080	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:3,3:7,3
+chr7	58074443	.	T	A	0	PASS	DP=101;GPV=1;SPV=0.026749;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:27,3:18,2
+chr7	59230501	.	T	C	0	PASS	DP=153;GPV=1;SPV=0.034532;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:52,11:30,7:22,4
+chr7	59235792	.	C	A	0	PASS	DP=81;GPV=1;SPV=0.023086;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,4:19,3:6,1
+chr7	60949959	.	C	T	0	PASS	DP=161;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:58,16:37,11:21,5
+chr7	60996788	.	GAGATGAAA	G	0	PASS	DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:19,2:12,2
+chr7	61158914	.	T	C	0	PASS	DP=24;GPV=1;SPV=0.041502;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:6,3:0,0
+chr7	61221694	.	T	G	0	PASS	DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:13,4:0,0
+chr7	61384046	.	G	A	0	PASS	DP=91;GPV=1;SPV=0.0077283;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:4,1:23,10
+chr7	61426250	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:0,0:16,4
+chr7	61458723	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:0,2:5,3
+chr7	61488423	.	C	A	0	PASS	DP=67;GPV=1;SPV=0.030987;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:23,4:2,0
+chr7	61491458	.	C	G	0	PASS	DP=61;GPV=1;SPV=0.0071446;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,1:14,4
+chr7	62171994	.	C	A	0	PASS	DP=68;GPV=1;SPV=3.3156e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:4,7:9,6
+chr7	62266337	.	C	A	0	PASS	DP=122;GPV=1;SPV=0.038175;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:15,4:29,7
+chr7	62382114	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.045347;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,7:20,4:15,3
+chr7	63037940	.	C	A	0	PASS	DP=58;GPV=1;SPV=2.1506e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,13:7,7:9,6
+chr7	63111811	.	A	ATTT	0	PASS	DP=23;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,6:2,3:5,3
+chr7	63624963	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.023051;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:7,5:15,2
+chr7	63627813	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.031709;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:10,3:5,2
+chr7	63628250	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.0063301;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:13,4:16,10
+chr7	63647439	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.035255;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:7,5:7,2
+chr7	63797093	.	CA	C	0	PASS	DP=41;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:5,8:0,7:5,1
+chr7	64323008	.	C	T	0	PASS	DP=52;GPV=1;SPV=0.00015969;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:4,7:7,7
+chr7	65327229	.	G	A	0	PASS	DP=57;GPV=1;SPV=5.5291e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:9,4:4,5
+chr7	65505802	.	T	A	0	PASS	DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:10,2:6,2
+chr7	66612768	.	C	G	0	PASS	DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:1,4:4,4
+chr7	67204543	.	C	T	0	PASS	DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:2,2:14,2
+chr7	67501558	.	GT	G	0	PASS	DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:4,3:3,3
+chr7	67734055	.	CCCTTCCTTCCTTCCTTCCTT	C	0	PASS	DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:2,3:6,1
+chr7	67849899	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:4,3:0,2
+chr7	68320392	.	T	A	0	PASS	DP=45;GPV=1;SPV=3.1278e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,13:4,4:6,9
+chr7	68799109	.	C	G	0	PASS	DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:3,1:4,1
+chr7	68848491	.	C	A	0	PASS	DP=51;GPV=1;SPV=0.0034541;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:10,7:12,5
+chr7	69039796	.	GT	G	0	PASS	DP=38;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,6:2,5:5,1
+chr7	69339334	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.011726;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:9,1:9,4
+chr7	70043547	.	CCCTTCCTTCCTT	C	0	PASS	DP=33;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,7:5,3:3,4
+chr7	70992281	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:2,3:10,6
+chr7	72013247	.	AT	A	0	PASS	DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:10,7:0,1
+chr7	72941450	.	T	TCGAAG	0	PASS	DP=43;GPV=1;SPV=6.1321e-05;SS=2;SSC=42;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:6,5:4,6
+chr7	73123782	.	T	TCTCTCTCC	0	PASS	DP=75;GPV=1;SPV=0.026801;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:13,1:21,5
+chr7	73265004	.	CCTCT	C	0	PASS	DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:2,1:3,4
+chr7	74167335	.	C	CTTT	0	PASS	DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:7,3:3,3
+chr7	74221410	.	CAAAAAAAAAA	C	0	PASS	DP=31;GPV=1;SPV=0.0098951;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:5,4:2,3
+chr7	74918935	.	TTGTGTGTG	T	0	PASS	DP=25;GPV=1;SPV=0.0063025;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:1,3:1,1
+chr7	75457572	.	C	G	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:19,3:1,1
+chr7	75597739	.	C	CAAAAAA	0	PASS	DP=30;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:7,1:3,3
+chr7	76136938	.	T	TA	0	PASS	DP=48;GPV=1;SPV=0.021511;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,6:6,3:5,3
+chr7	77057397	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:16,2:19,2
+chr7	77391125	.	C	CAA	0	PASS	DP=21;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,5:2,4:1,1
+chr7	79136026	.	AAG	A	0	PASS	DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:17,4:3,1
+chr7	79200445	.	TA	T	0	PASS	DP=53;GPV=1;SPV=0.00011224;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,4:7,5
+chr7	81343269	.	CT	C	0	PASS	DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:8,6:3,1
+chr7	81360549	.	A	T	0	PASS	DP=64;GPV=1;SPV=0.0087227;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:14,3:15,5
+chr7	81498637	.	CT	C	0	PASS	DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:8,8:5,3
+chr7	82288424	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:7,2:5,1:2,1
+chr7	82637666	.	G	A	0	PASS	DP=61;GPV=1;SPV=1.584e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:6,8:7,5
+chr7	83246471	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.00018019;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:8,8:14,3
+chr7	84826063	.	T	TA	0	PASS	DP=37;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:3,1:6,5
+chr7	84924519	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.0010395;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:5,4:12,4
+chr7	85404044	.	G	GAA	0	PASS	DP=41;GPV=1;SPV=0.018627;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:1,13:1,9:0,4
+chr7	85954185	.	T	C	0	PASS	DP=58;GPV=1;SPV=5.8193e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:6,8:11,4
+chr7	86322822	.	A	G	0	PASS	DP=60;GPV=1;SPV=1.9498e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,15:9,6:9,9
+chr7	86427667	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.030104;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,4:6,1:3,3
+chr7	88519600	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.0011403;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:8,2:12,5
+chr7	90250187	.	GGA	G	0	PASS	DP=37;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,6:6,4:3,2
+chr7	91290943	.	C	CATATATATATATAT	0	PASS	DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:4,2:3,2
+chr7	91614359	.	G	A	0	PASS	DP=43;GPV=1;SPV=2.0286e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:5,6:2,3
+chr7	92104194	.	T	A	0	PASS	DP=32;GPV=1;SPV=0.008837;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:8,2:2,4
+chr7	93456882	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.00096298;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:9,2:6,5
+chr7	94025917	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,2:5,2
+chr7	94518090	.	A	G	0	PASS	DP=83;GPV=1;SPV=0.00035634;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:15,6:17,5
+chr7	95267489	.	G	A	0	PASS	DP=54;GPV=1;SPV=1.5161e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:7,7:6,5
+chr7	95580042	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:1,3:1,2:0,1
+chr7	96128939	.	G	GCTCTCT	0	PASS	DP=38;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,5:8,4:6,1
+chr7	96943707	.	T	TAG	0	PASS	DP=41;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,2:1,1:3,1
+chr7	97467641	.	C	T	0	PASS	DP=53;GPV=1;SPV=1.6688e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:12,7:2,7
+chr7	97897657	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.0022599;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:15,7:5,2
+chr7	97973032	.	T	G	0	PASS	DP=20;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,5:2,3:2,2
+chr7	99205417	.	A	C	0	PASS	DP=35;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,2:3,1:0,1
+chr7	99640436	.	G	A	0	PASS	DP=58;GPV=1;SPV=2.6068e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:8,5:6,10
+chr7	100524058	.	C	G	0	PASS	DP=76;GPV=1;SPV=0.0054478;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:12,5:16,4
+chr7	100524383	.	A	G	0	PASS	DP=72;GPV=1;SPV=0.030584;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:13,1:14,3
+chr7	100745033	.	G	A	0	PASS	DP=65;GPV=1;SPV=4.5165e-09;SS=2;SSC=83;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,17:6,8:4,9
+chr7	100975659	.	G	GGAGCTTAGGGCTGGAGGGGCACAGAGA	0	PASS	DP=67;GPV=1;SPV=0.019266;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:14,4:13,4
+chr7	101035091	.	T	G	0	PASS	DP=66;GPV=1;SPV=0.02281;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:13,5:9,5
+chr7	101329607	.	A	AT	0	PASS	DP=24;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:6,3:2,3
+chr7	101391892	.	T	TC	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:12,1:8,3
+chr7	101427660	.	T	TAA	0	PASS	DP=45;GPV=1;SPV=0.0016432;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:8,6:3,7
+chr7	101740758	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,6:8,5:6,1
+chr7	102497912	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.018307;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,3:4,3
+chr7	102520100	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr7	102580842	.	CA	C	0	PASS	DP=44;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:11,4:0,0
+chr7	102630085	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr7	103603023	.	C	A	0	PASS	DP=50;GPV=1;SPV=0.025988;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:13,1:4,3
+chr7	103817937	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.022239;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,5:8,3:4,2
+chr7	105247527	.	CATAA	C	0	PASS	DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,2:8,2
+chr7	105645640	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,9:3,3:1,6
+chr7	107249690	.	TTGTG	T	0	PASS	DP=24;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,7:1,4:1,3
+chr7	109508052	.	AAAG	A	0	PASS	DP=54;GPV=1;SPV=0.00076672;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,12:4,5:7,7
+chr7	113086195	.	G	C	0	PASS	DP=41;GPV=1;SPV=0.042105;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,3:2,2:3,1
+chr7	114051547	.	G	C	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr7	115399375	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.00013159;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:6,3:1,5
+chr7	115439497	.	G	T	0	PASS	DP=21;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,5:1,2:2,3
+chr7	115974451	.	A	T	0	PASS	DP=27;GPV=1;SPV=0.018648;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,5:1,2:2,3
+chr7	117027518	.	G	GTA	0	PASS	DP=46;GPV=1;SPV=0.047173;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:6,4:9,1
+chr7	119382397	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.00031989;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:11,5:6,3
+chr7	120503385	.	T	TGAGAGAGAGAGA	0	PASS	DP=49;GPV=1;SPV=0.032166;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,7:10,6:8,1
+chr7	121867378	.	G	A	0	PASS	DP=73;GPV=1;SPV=1.537e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:22,19:16,11:6,8
+chr7	121892679	.	CATATATAT	C	0	PASS	DP=24;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:3,2:4,3
+chr7	124387962	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:10,4:4,1
+chr7	125127127	.	TAC	T	0	PASS	DP=40;GPV=1;SPV=0.0028678;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,11:2,3:7,8
+chr7	125366962	.	G	T	0	PASS	DP=54;GPV=1;SPV=8.5692e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:6,6:3,6
+chr7	127214689	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.029272;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,2:11,2
+chr7	127579933	.	T	C	0	PASS	DP=59;GPV=1;SPV=1.944e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:7,6:7,9
+chr7	130451025	.	A	T	0	PASS	DP=36;GPV=1;SPV=0.041502;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,3:6,2:0,1
+chr7	130545175	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:5,2:4,1:1,1
+chr7	134147434	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,9:7,4:5,5
+chr7	135791446	.	G	GTT	0	PASS	DP=25;GPV=1;SPV=0.25826;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,3:5,2
+chr7	137126173	.	TAAAAAAA	T	0	PASS	DP=23;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:4,3:2,1
+chr7	137280871	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:11,6:3,1
+chr7	138700714	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.096616;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:26,3:13,2:13,1
+chr7	139385311	.	CTTTTTTTT	C	0	PASS	DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:6,8:1,2
+chr7	141330084	.	C	CT	0	PASS	DP=46;GPV=1;SPV=0.00094404;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:5,5:8,3
+chr7	141454604	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.037417;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,1:5,5
+chr7	143572908	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,3:2,1
+chr7	144237581	.	A	C	0	PASS	DP=177;GPV=1;SPV=0.0069741;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:65,18:25,6:40,12
+chr7	145629802	.	G	A	0	PASS	DP=47;GPV=1;SPV=8.6732e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,16:4,9:7,7
+chr7	145806346	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.00017259;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:8,3:7,6
+chr7	146358022	.	T	TTTTA	0	PASS	DP=47;GPV=1;SPV=0.0082728;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,10:7,7:6,3
+chr7	146572264	.	CTTT	C	0	PASS	DP=33;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:4,9:3,8:1,1
+chr7	147547712	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.00044867;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:10,8:8,2
+chr7	147575107	.	A	ATATG	0	PASS	DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:3,2:10,3
+chr7	147659905	.	C	T	0	PASS	DP=63;GPV=1;SPV=5.4178e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:16,20:9,10:7,10
+chr7	148141034	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.022533;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:9,1:18,4
+chr7	148247629	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.0041892;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,3:6,4
+chr7	148598763	.	TAGAGAG	T	0	PASS	DP=21;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,2:0,1:0,1
+chr7	148751563	.	G	T	0	PASS	DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:1,7:4,2
+chr7	149215195	.	AT	A	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,3:8,1
+chr7	149979189	.	G	C	0	PASS	DP=73;GPV=1;SPV=0.0095351;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:11,1:18,5
+chr7	150072489	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:4,6:3,2
+chr7	150165496	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.0014508;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,9:1,4:6,5
+chr7	150774725	.	C	CAA	0	PASS	DP=23;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:2,4:4,1
+chr7	151738278	.	T	C	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,3:5,1
+chr7	152693656	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.040169;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:9,2:8,2
+chr7	153303161	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:4,4:7,1
+chr7	153705837	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.029503;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:8,5:7,2
+chr7	153730136	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.043789;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:12,4:10,1
+chr7	154096293	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:13,1:4,4
+chr7	155180011	.	TAAAAA	T	0	PASS	DP=24;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:5,5:2,1
+chr7	155348782	.	TAG	T	0	PASS	DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:9,4:2,2
+chr7	155348793	.	CACATAG	C	0	PASS	DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:11,4:1,2
+chr7	155348801	.	G	T	0	PASS	DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:11,4:2,2
+chr7	155348826	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:10,5:1,2
+chr7	155348831	.	TAGAGCACTCATAGAG	T	0	PASS	DP=24;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:9,5:0,2
+chr7	155919078	.	C	CGTGTGTGTGTGT	0	PASS	DP=29;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,10:2,9:1,1
+chr7	156400721	.	C	CTTT	0	PASS	DP=16;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,2:1,1:2,1
+chr7	156610722	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.00015824;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:10,5:9,7
+chr7	157954709	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.00014422;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:5,6:12,5
+chr7	157995006	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:5,1:1,1
+chr7	158045866	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chr8	1081796	.	C	T	0	PASS	DP=45;GPV=1;SPV=2.0163e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,16:6,11:5,5
+chr8	1283033	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:4,4:1,3
+chr8	1456851	.	T	TGTGCCAGGCC	0	PASS	DP=56;GPV=1;SPV=0.0154;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:15,4:7,5
+chr8	1609424	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:5,4:7,1
+chr8	2211434	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.0012045;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:2,8:8,1
+chr8	2470759	.	A	T	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:6,1:1,1
+chr8	2623407	.	GAGAGCGCTGAGCGCCA	G	0	PASS	DP=65;GPV=1;SPV=0.0072729;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:7,1:9,6
+chr8	3175483	.	TCCTGCCTG	T	0	PASS	DP=27;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:1,1:5,9
+chr8	3249798	.	G	A	0	PASS	DP=60;GPV=1;SPV=9.7202e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,16:10,8:4,8
+chr8	3720621	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:6,4:9,4
+chr8	3819560	.	A	T	0	PASS	DP=42;GPV=1;SPV=0.013669;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:7,2:7,3
+chr8	5246465	.	G	T	0	PASS	DP=24;GPV=1;SPV=0.027668;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:1,2:4,1
+chr8	5308824	.	A	G	0	PASS	DP=71;GPV=1;SPV=6.1846e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,15:8,9:9,6
+chr8	5766212	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.043511;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:9,2:9,7
+chr8	7294087	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:5,1:2,1
+chr8	7423063	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.026525;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:22,6:9,5
+chr8	7469467	.	C	A	0	PASS	DP=158;GPV=1;SPV=0.030329;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:64,17:32,8:32,9
+chr8	7885678	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:3,2:5,3
+chr8	8066110	.	T	G	0	PASS	DP=186;GPV=1;SPV=0.021565;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:73,11:29,9:44,2
+chr8	11627296	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:10,3:8,4
+chr8	11641293	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.0021522;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:8,3:6,3
+chr8	12176130	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:4,1:27,6
+chr8	12191738	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.013049;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:11,2:12,6
+chr8	12415019	.	T	C	0	PASS	DP=132;GPV=1;SPV=0.0093436;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:50,18:35,12:15,6
+chr8	12504775	.	G	T	0	PASS	DP=163;GPV=1;SPV=0.025272;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:66,8:31,7:35,1
+chr8	12524232	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.045253;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:12,1:11,7
+chr8	12550602	.	C	A	0	PASS	DP=223;GPV=1;SPV=0.021273;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:85,21:41,11:44,10
+chr8	12551039	.	G	A	0	PASS	DP=234;GPV=1;SPV=0.020361;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:92,22:42,13:50,9
+chr8	12563407	.	T	C	0	PASS	DP=264;GPV=1;SPV=0.029034;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:114,20:47,8:67,12
+chr8	12596345	.	C	T	0	PASS	DP=253;GPV=1;SPV=0.045664;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:121:104,17:64,12:40,5
+chr8	12596504	.	C	A	0	PASS	DP=267;GPV=1;SPV=0.00016521;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:124:94,30:47,14:47,16
+chr8	13248244	.	C	G	0	PASS	DP=59;GPV=1;SPV=0.0016044;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:10,5:12,4
+chr8	14408969	.	GTGCA	G	0	PASS	DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:18,3:14,1
+chr8	14519067	.	TA	T	0	PASS	DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:11,2:15,4
+chr8	14575913	.	C	CAA	0	PASS	DP=29;GPV=1;SPV=0.015718;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,7:4,6:1,1
+chr8	14762624	.	C	A	0	PASS	DP=61;GPV=1;SPV=1.7819e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:6,6:8,8
+chr8	15292481	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.00048101;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:5,9:4,3
+chr8	15443336	.	T	TTG	0	PASS	DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:6,2:3,3
+chr8	16803010	.	A	C	0	PASS	DP=53;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:1,3:1,1:0,2
+chr8	16944916	.	T	A	0	PASS	DP=76;GPV=1;SPV=0.01047;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:13,2:8,5
+chr8	17322942	.	T	A	0	PASS	DP=37;GPV=1;SPV=0.01132;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,4:3,2
+chr8	17439426	.	AT	A	0	PASS	DP=48;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,4:11,1:6,3
+chr8	21095590	.	A	T	0	PASS	DP=69;GPV=1;SPV=7.4135e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:4,7:8,4
+chr8	21529509	.	A	AGT	0	PASS	DP=53;GPV=1;SPV=0.022922;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:3,3:18,2
+chr8	21533378	.	GAA	G	0	PASS	DP=30;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,6:9,4:1,2
+chr8	21772682	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.00032906;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:4,2:8,9
+chr8	23480847	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.00011387;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:12,6:8,5
+chr8	24218765	.	T	C	0	PASS	DP=66;GPV=1;SPV=6.4776e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,15:5,7:7,8
+chr8	24548351	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.0068026;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,6:4,5:0,1
+chr8	25912466	.	G	GCACACACACA	0	PASS	DP=26;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,6:4,5:1,1
+chr8	26680339	.	CTCTCTCTTTCTT	C	0	PASS	DP=37;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,4:4,1:14,3
+chr8	26691587	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,6:2,3:7,3
+chr8	27200594	.	GCA	G	0	PASS	DP=42;GPV=1;SPV=0.022413;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:6,3:6,5
+chr8	27251900	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.01219;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:13,2:14,4
+chr8	27257459	.	AACACACAC	A	0	PASS	DP=39;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,8:1,3:5,5
+chr8	28022157	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:4,2:1,2
+chr8	28293162	.	TA	T	0	PASS	DP=35;GPV=1;SPV=0.059571;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:10,6:7,2
+chr8	28320096	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,2:2,1:4,1
+chr8	30375913	.	G	GAC	0	PASS	DP=45;GPV=1;SPV=0.00074811;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,9:4,5:2,4
+chr8	30661150	.	T	A	0	PASS	DP=67;GPV=1;SPV=0.0029095;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:14,4:14,5
+chr8	31096744	.	T	G	0	PASS	DP=40;GPV=1;SPV=0.00021796;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:4,3:6,7
+chr8	32132185	.	T	C	0	PASS	DP=70;GPV=1;SPV=4.3453e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,13:11,8:7,5
+chr8	32662515	.	G	A	0	PASS	DP=62;GPV=1;SPV=1.8159e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:20,18:11,8:9,10
+chr8	33195381	.	A	ATG	0	PASS	DP=32;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,7:4,4:4,3
+chr8	33519082	.	TC	T	0	PASS	DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:17,2:8,3
+chr8	34484897	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.006844;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:12,3:13,4
+chr8	34728271	.	G	C	0	PASS	DP=58;GPV=1;SPV=0.0056882;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:11,3:9,3
+chr8	35474387	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.00020504;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:14,8:16,6
+chr8	36156511	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.02969;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:8,1:8,3
+chr8	36599288	.	AATATAT	A	0	PASS	DP=25;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,6:1,5:3,1
+chr8	43520908	.	G	T	0	PASS	DP=69;GPV=1;SPV=0.016248;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:19,4:11,2
+chr8	43844204	.	G	A	0	PASS	DP=65;GPV=1;SPV=6.2649e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,16:10,4:9,12
+chr8	43850604	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:10,2:10,2
+chr8	44080375	.	C	A	0	PASS	DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr8	44316208	.	G	C	0	PASS	DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,4:0,0
+chr8	44523758	.	G	T	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr8	45339224	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:9,5:0,1
+chr8	46226517	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.0042664;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:5,3:8,1
+chr8	47066875	.	C	CAA	0	PASS	DP=31;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:7,8:2,1
+chr8	48017378	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.011495;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:12,6:11,1
+chr8	50660426	.	GAAGA	G	0	PASS	DP=26;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:0,4:0,4:0,0
+chr8	51217130	.	G	A	0	PASS	DP=52;GPV=1;SPV=3.8791e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,15:3,10:9,5
+chr8	51356497	.	T	TA	0	PASS	DP=42;GPV=1;SPV=0.00014733;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:8,14:2,11:6,3
+chr8	51397755	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.0009828;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:6,3:5,5
+chr8	53451451	.	C	A	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:9,1:11,3
+chr8	53468932	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.00084928;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:8,4:9,5
+chr8	53706295	.	C	T	0	PASS	DP=65;GPV=1;SPV=3.548e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:12,10:7,8
+chr8	54216289	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:7,3:13,3
+chr8	55552407	.	C	T	0	PASS	DP=57;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:8,3:9,10
+chr8	55746317	.	C	CAAAA	0	PASS	DP=18;GPV=1;SPV=0.0055944;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:1,8:0,7:1,1
+chr8	56082376	.	T	TTTTG	0	PASS	DP=51;GPV=1;SPV=0.032696;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,7:5,1:7,6
+chr8	56137576	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,4:8,2:6,2
+chr8	56837298	.	A	T	0	PASS	DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:12,3:9,1
+chr8	58078547	.	C	CTT	0	PASS	DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,3:3,1
+chr8	60192939	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:1,4:1,3:0,1
+chr8	60293496	.	A	G	0	PASS	DP=60;GPV=1;SPV=1.0635e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,15:9,5:8,10
+chr8	60391531	.	C	CAA	0	PASS	DP=40;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,5:7,3:7,2
+chr8	63551197	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.20221;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:8,7:4,5:4,2
+chr8	64075846	.	C	CT	0	PASS	DP=56;GPV=1;SPV=0.019655;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,7:14,6:10,1
+chr8	64621734	.	A	AT	0	PASS	DP=42;GPV=1;SPV=0.0041541;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:10,4:5,4
+chr8	64689465	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:17,3:13,1
+chr8	66285220	.	C	A	0	PASS	DP=47;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,2:5,1:2,1
+chr8	66677212	.	G	T	0	PASS	DP=53;GPV=1;SPV=5.9904e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,15:4,6:9,9
+chr8	69729446	.	CAA	C	0	PASS	DP=26;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,5:2,3:2,2
+chr8	70442097	.	G	GA	0	PASS	DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:14,4:0,0
+chr8	70493053	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.0012176;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:8,3:6,9
+chr8	71790704	.	CA	C	0	PASS	DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,4:5,2
+chr8	72151514	.	T	C	0	PASS	DP=41;GPV=1;SPV=0.02002;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:8,4:4,5
+chr8	72182016	.	T	TAGATAGATGATA	0	PASS	DP=52;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:4,10:3,5:1,5
+chr8	72197763	.	CAT	C	0	PASS	DP=49;GPV=1;SPV=0.05154;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:8,3:15,2
+chr8	74401141	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:18,2:10,2
+chr8	75102759	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,2:1,1:4,1
+chr8	75105266	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:2,1:5,3
+chr8	77785927	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.00162;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:6,1:6,4
+chr8	77824395	.	C	A	0	PASS	DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:4,3:13,1
+chr8	78843814	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:8,3:13,1
+chr8	79688530	.	TA	T	0	PASS	DP=51;GPV=1;SPV=0.016731;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:6,1:7,4
+chr8	81726706	.	C	CTT	0	PASS	DP=19;GPV=1;SPV=0.0037707;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,7:3,6:0,1
+chr8	82384510	.	A	G	0	PASS	DP=51;GPV=1;SPV=5.2411e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:5,7:6,6
+chr8	85567765	.	CAT	C	0	PASS	DP=54;GPV=1;SPV=0.047273;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:14,2:8,2
+chr8	85575297	.	T	C	0	PASS	DP=56;GPV=1;SPV=8.756e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:5,7:11,4
+chr8	85650554	.	C	T	0	PASS	DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:1,4:4,1
+chr8	85653042	.	C	G	0	PASS	DP=482;GPV=1;SPV=0.03412;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:228:202,26:84,12:118,14
+chr8	85769882	.	C	T	0	PASS	DP=329;GPV=1;SPV=0.03173;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:157:133,24:4,1:129,23
+chr8	85774081	.	G	T	0	PASS	DP=1398;GPV=1;SPV=0.037656;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:682:608,73:284,20:324,53
+chr8	85774470	.	A	T	0	PASS	DP=131;GPV=1;SPV=0.0052014;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:67,14:6,6:61,8
+chr8	85963127	.	A	AGTGTGT	0	PASS	DP=52;GPV=1;SPV=0.0027697;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:9,5:2,5
+chr8	87753303	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,7:2,5:1,2
+chr8	88578361	.	G	A	0	PASS	DP=71;GPV=1;SPV=2.3986e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:19,21:8,11:11,10
+chr8	88647557	.	G	T	0	PASS	DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:13,2:13,4
+chr8	90416172	.	A	AAAAAAAACAAAAAC	0	PASS	DP=29;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,4:7,1:6,3
+chr8	90721358	.	C	A	0	PASS	DP=56;GPV=1;SPV=0.00014106;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,14:11,8:8,6
+chr8	93394841	.	C	CG	0	PASS	DP=65;GPV=1;SPV=0.0011596;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:9,5:13,3
+chr8	93453316	.	C	A	0	PASS	DP=52;GPV=1;SPV=0.01454;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:11,2:10,4
+chr8	96854555	.	A	C	0	PASS	DP=34;GPV=1;SPV=0.025565;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,2:3,3
+chr8	97998519	.	CA	C	0	PASS	DP=31;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:4,10:2,8:2,2
+chr8	98133049	.	C	CA	0	PASS	DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,4:0,0
+chr8	98224755	.	C	CTT	0	PASS	DP=20;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:0,6:0,4:0,2
+chr8	99772206	.	C	CT	0	PASS	DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:3,4:8,5
+chr8	101025452	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.016601;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:3,3:3,1
+chr8	101196244	.	T	TATGG	0	PASS	DP=55;GPV=1;SPV=0.047969;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:11,4:6,2
+chr8	101515176	.	G	GCACACACACA	0	PASS	DP=29;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:3,5:2,1
+chr8	102396661	.	CACACATAT	C	0	PASS	DP=55;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:14,10:8,5:6,5
+chr8	103059898	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.011905;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:0,3:0,2:0,1
+chr8	103081487	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,6:5,3
+chr8	104118370	.	G	GT	0	PASS	DP=46;GPV=1;SPV=0.01322;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:7,5:5,3
+chr8	105330625	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:3,2:3,3
+chr8	108098163	.	G	GGAAA	0	PASS	DP=34;GPV=1;SPV=0.027634;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,4:2,4:0,0
+chr8	108608315	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.016254;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,5:0,3:5,2
+chr8	111208276	.	CAT	C	0	PASS	DP=22;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,6:2,4:0,2
+chr8	111492590	.	G	GT	0	PASS	DP=65;GPV=1;SPV=0.00024776;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:9,8:12,2
+chr8	111934396	.	TA	T	0	PASS	DP=65;GPV=1;SPV=0.016282;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:15,2:13,4
+chr8	113327769	.	TA	T	0	PASS	DP=77;GPV=1;SPV=0.01107;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:17,5:17,6
+chr8	113984641	.	G	A	0	PASS	DP=25;GPV=1;SPV=0.017534;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,5:0,1:2,4
+chr8	116508940	.	T	TTGTGTG	0	PASS	DP=42;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,7:5,5:4,2
+chr8	116756383	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.023708;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:13,3:9,3
+chr8	117052992	.	C	T	0	PASS	DP=74;GPV=1;SPV=2.2234e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:22,17:13,9:9,8
+chr8	119498425	.	TATATATATATGGGAAG	T	0	PASS	DP=26;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:4,2:5,7
+chr8	119498452	.	CAA	C	0	PASS	DP=27;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,9:3,2:4,7
+chr8	122382785	.	G	A	0	PASS	DP=60;GPV=1;SPV=2.9161e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,15:7,9:8,6
+chr8	122394427	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.0064629;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,15:8,10:6,5
+chr8	122591787	.	G	C	0	PASS	DP=53;GPV=1;SPV=0.026826;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:13,8:10,2
+chr8	124399901	.	G	T	0	PASS	DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:4,3:3,5
+chr8	124399913	.	TCTTA	T	0	PASS	DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:4,2:4,8
+chr8	126682726	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.049272;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:14,2:7,3
+chr8	126682727	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.018191;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:13,3:7,3
+chr8	127984837	.	TTTTCTTTCTTTCTTTC	T	0	PASS	DP=47;GPV=1;SPV=0.032371;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:3,3:13,3
+chr8	127985196	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.00049976;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:9,5:6,5
+chr8	128710036	.	A	C	0	PASS	DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:8,3:3,2
+chr8	132242402	.	C	T	0	PASS	DP=65;GPV=1;SPV=1.5408e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:9,5:12,12
+chr8	132409460	.	T	TA	0	PASS	DP=37;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:8,5:7,2
+chr8	133977912	.	A	AGTGTGT	0	PASS	DP=41;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:6,4:6,3
+chr8	135402902	.	A	T	0	PASS	DP=60;GPV=1;SPV=1.6444e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:4,3:4,6
+chr8	135691606	.	TA	T	0	PASS	DP=43;GPV=1;SPV=0.0015637;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:5,6:7,1
+chr8	135769197	.	G	T	0	PASS	DP=36;GPV=1;SPV=0.020376;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:4,3:7,4
+chr8	136020188	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.00014106;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,14:8,11:11,3
+chr8	136702035	.	T	G	0	PASS	DP=25;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,2:4,1:3,1
+chr8	136891951	.	T	G	0	PASS	DP=71;GPV=1;SPV=1.1868e-09;SS=2;SSC=89;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:13,22:8,7:5,15
+chr8	137247376	.	C	T	0	PASS	DP=46;GPV=1;SPV=4.0261e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,14:4,11:8,3
+chr8	137618002	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.0051097;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:10,2:10,4
+chr8	137962213	.	T	A	0	PASS	DP=61;GPV=1;SPV=7.1707e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,16:8,8:6,8
+chr8	138066493	.	ATATATATATATATT	A	0	PASS	DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:3,3:2,3
+chr8	138281099	.	GA	G	0	PASS	DP=64;GPV=1;SPV=0.022285;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:12,2:14,3
+chr8	138309986	.	C	G	0	PASS	DP=59;GPV=1;SPV=1.0935e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,14:9,3:7,11
+chr8	140502381	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.00706;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,8:8,5:11,3
+chr8	141497158	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:2,1:4,1
+chr8	141813792	.	T	C	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:5,1:1,1
+chr8	142222102	.	C	CATT	0	PASS	DP=28;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:0,5:0,3:0,2
+chr8	142483734	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:4,1:2,1
+chr8	142589725	.	G	C	0	PASS	DP=20;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,2:6,2:0,0
+chr8	143728958	.	C	T	0	PASS	DP=66;GPV=1;SPV=4.15e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:7,4:7,7
+chr9	141308	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.0098105;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:3,1:4,4
+chr9	448271	.	G	T	0	PASS	DP=56;GPV=1;SPV=0.0088091;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:5,2:13,3
+chr9	2686086	.	C	CATAT	0	PASS	DP=22;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,4:0,0
+chr9	6176302	.	A	T	0	PASS	DP=45;GPV=1;SPV=0.04724;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,4:4,3:3,1
+chr9	6820714	.	CTTT	C	0	PASS	DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:3,4:5,3
+chr9	8483801	.	CAA	C	0	PASS	DP=50;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:26:1,7:1,2:0,5
+chr9	9352327	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.016809;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:11,6:10,3:1,3
+chr9	10643562	.	CT	C	0	PASS	DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,1:12,3
+chr9	10962039	.	A	AC	0	PASS	DP=47;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,5:0,2:6,3
+chr9	11220595	.	TA	T	0	PASS	DP=57;GPV=1;SPV=0.0062893;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:4,3:13,2
+chr9	12587153	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.019411;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:9,5:9,9
+chr9	12677964	.	T	A	0	PASS	DP=53;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,4:8,1:6,3
+chr9	12677966	.	A	AATAAAAT	0	PASS	DP=55;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,4:8,1:6,3
+chr9	13418779	.	A	G	0	PASS	DP=53;GPV=1;SPV=0.03024;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:13,1:6,3
+chr9	13629642	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.00077986;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:5,3:8,5
+chr9	14417774	.	G	GT	0	PASS	DP=32;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,9:10,7:0,2
+chr9	15494565	.	CA	C	0	PASS	DP=20;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,7:2,6:2,1
+chr9	15569846	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.11905;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:2,3:0,0:2,3
+chr9	17764719	.	G	C	0	PASS	DP=34;GPV=1;SPV=0.01205;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:0,1:9,6
+chr9	18626916	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,1:4,4
+chr9	19794596	.	T	TAA	0	PASS	DP=41;GPV=1;SPV=0.014448;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:4,12:1,9:3,3
+chr9	19812178	.	T	A	0	PASS	DP=70;GPV=1;SPV=0.014039;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:17,2:9,3
+chr9	20679121	.	ATGTGTGTG	A	0	PASS	DP=35;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,4:8,3:3,1
+chr9	20778345	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.00056446;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,15:3,5:4,10
+chr9	23936282	.	T	C	0	PASS	DP=46;GPV=1;SPV=1.259e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,11:1,3:8,8
+chr9	23951283	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.011461;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:14,3:7,3
+chr9	24577022	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.010223;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:9,5:9,3
+chr9	25055019	.	A	T	0	PASS	DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:4,4:2,1
+chr9	25388030	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.011486;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,3:13,2
+chr9	25574963	.	CT	C	0	PASS	DP=35;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:6,16:2,12:4,4
+chr9	26083642	.	G	GT	0	PASS	DP=27;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,9:5,5:2,4
+chr9	30749255	.	G	T	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,2:12,2
+chr9	31238476	.	C	T	0	PASS	DP=51;GPV=1;SPV=9.6614e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:9,5:3,4
+chr9	31379009	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.045513;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:11,1:14,3
+chr9	32584663	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.044088;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:5,1:12,3
+chr9	33713898	.	T	TA	0	PASS	DP=18;GPV=1;SPV=0.00761;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:2,8:0,1:2,7
+chr9	33856888	.	CTTTTT	C	0	PASS	DP=23;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,5:3,3:1,2
+chr9	34166012	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,6:4,5:4,1
+chr9	35030581	.	A	AT	0	PASS	DP=42;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:8,9:2,4:6,5
+chr9	35228740	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:8,1:9,3
+chr9	38261077	.	T	C	0	PASS	DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:2,1:8,4
+chr9	38838402	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:12,4:3,1
+chr9	38991273	.	C	T	0	PASS	DP=171;GPV=1;SPV=0.027492;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:62,17:31,8:31,9
+chr9	38993510	.	G	A	0	PASS	DP=231;GPV=1;SPV=0.0021265;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:82,25:43,11:39,14
+chr9	38998991	.	T	C	0	PASS	DP=156;GPV=1;SPV=0.047895;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:60,14:28,7:32,7
+chr9	39013407	.	G	A	0	PASS	DP=164;GPV=1;SPV=0.015148;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:75,16:34,3:41,13
+chr9	39045534	.	T	G	0	PASS	DP=164;GPV=1;SPV=0.00056973;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:56,18:26,13:30,5
+chr9	39051047	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.021208;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:7,6:13,3
+chr9	39113991	.	TACAC	T	0	PASS	DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,3:9,1
+chr9	39179286	.	T	TACACACAC	0	PASS	DP=24;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,3:4,1
+chr9	39499487	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,4:5,1
+chr9	39517006	.	C	G	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr9	39520803	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:9,3:10,1
+chr9	39557320	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,3:1,2:4,1
+chr9	39626787	.	C	G	0	PASS	DP=129;GPV=1;SPV=0.035593;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:55,15:26,8:29,7
+chr9	39817326	.	AT	A	0	PASS	DP=115;GPV=1;SPV=0.045271;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:16,9:20,1
+chr9	40016751	.	C	CT	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:6,1:2,3
+chr9	40164578	.	C	A	0	PASS	DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:2,2:8,5
+chr9	40316090	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr9	40325426	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,1:5,3
+chr9	40379276	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.045291;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:14,2:12,6
+chr9	40383552	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:2,1:10,3
+chr9	40389076	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.0062875;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,15:13,6:15,9
+chr9	40390275	.	G	C	0	PASS	DP=26;GPV=1;SPV=0.028009;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:5,2:5,6
+chr9	40412716	.	T	TA	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:0,0:6,4
+chr9	40577105	.	C	A	0	PASS	DP=56;GPV=1;SPV=0.019692;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:11,3:9,4
+chr9	40706905	.	CTT	C	0	PASS	DP=24;GPV=1;SPV=0.010883;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:0,3:3,2
+chr9	40810927	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.0030131;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:12,5:3,1
+chr9	40907626	.	C	T	0	PASS	DP=140;GPV=1;SPV=0.030133;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:58,12:28,3:30,9
+chr9	40911723	.	G	A	0	PASS	DP=117;GPV=1;SPV=0.0072137;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:41,15:15,7:26,8
+chr9	40913616	.	G	A	0	PASS	DP=172;GPV=1;SPV=0.032141;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:71,19:35,6:36,13
+chr9	40957130	.	A	G	0	PASS	DP=243;GPV=1;SPV=0.0063211;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:94,23:45,12:49,11
+chr9	40986021	.	A	AT	0	PASS	DP=107;GPV=1;SPV=0.029076;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:15,3:21,8
+chr9	40992886	.	C	A	0	PASS	DP=134;GPV=1;SPV=0.045651;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:49,9:21,5:28,4
+chr9	40993289	.	C	CA	0	PASS	DP=129;GPV=1;SPV=0.010922;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:48,15:21,5:27,10
+chr9	41043749	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.00090839;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:27,17:7,5:20,12
+chr9	41051859	.	T	C	0	PASS	DP=94;GPV=1;SPV=0.036533;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:14,2:21,9
+chr9	41119368	.	C	T	0	PASS	DP=123;GPV=1;SPV=0.030612;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:49,6:29,5:20,1
+chr9	41209773	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:5,3:9,3
+chr9	41262200	.	C	G	0	PASS	DP=175;GPV=1;SPV=0.023539;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:72,10:27,5:45,5
+chr9	41291398	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:4,1:3,1
+chr9	41496373	.	G	GAAAA	0	PASS	DP=40;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,4:7,2:7,2
+chr9	41506780	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:17,1:14,3
+chr9	41543621	.	G	T	0	PASS	DP=36;GPV=1;SPV=0.034946;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,1:5,4
+chr9	41573276	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.028928;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:13,6:18,1
+chr9	41575110	.	C	T	0	PASS	DP=119;GPV=1;SPV=0.0018877;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:48,11:15,7:33,4
+chr9	41627594	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.033473;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:16,5:5,1
+chr9	41668607	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.046205;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:16,4:23,4
+chr9	41668787	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.020101;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:16,4:12,6
+chr9	41681322	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr9	41850150	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:9,1:5,9
+chr9	41922394	.	A	T	0	PASS	DP=20;GPV=1;SPV=0.00035723;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:2,10:2,5:0,5
+chr9	42370600	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.04187;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,7:15,4:9,3
+chr9	42897072	.	T	A	0	PASS	DP=63;GPV=1;SPV=0.028033;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:15,2:13,7
+chr9	43026155	.	T	A	0	PASS	DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:1,2:3,5
+chr9	43260114	.	C	G	0	PASS	DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:16,3:18,2
+chr9	43303518	.	T	C	0	PASS	DP=201;GPV=1;SPV=0.0077665;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:85,24:40,14:45,10
+chr9	43303907	.	T	G	0	PASS	DP=79;GPV=1;SPV=0.0083637;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:13,3:18,3
+chr9	43385608	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.049878;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:19,5:18,2
+chr9	43385794	.	C	G	0	PASS	DP=48;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:7,1:15,4
+chr9	43385818	.	C	T	0	PASS	DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:6,1:14,4
+chr9	43689454	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.0030816;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:0,7:9,1
+chr9	43964692	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.047669;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:8,2:21,6
+chr9	44013050	.	T	C	0	PASS	DP=133;GPV=1;SPV=0.013579;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:52,9:10,8:42,1
+chr9	44060709	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.048804;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:33,4:0,0
+chr9	44240310	.	A	G	0	PASS	DP=80;GPV=1;SPV=0.0076953;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:17,5:12,3
+chr9	44377131	.	A	G	0	PASS	DP=216;GPV=1;SPV=0.013537;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:74,19:41,10:33,9
+chr9	44579928	.	G	T	0	PASS	DP=163;GPV=1;SPV=0.011122;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:62,14:55,13:7,1
+chr9	44897587	.	G	T	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr9	60577250	.	C	G	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,4:1,0
+chr9	60608908	.	T	A	0	PASS	DP=700;GPV=1;SPV=0.021051;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:320:282,38:264,37:18,1
+chr9	60608959	.	G	A	0	PASS	DP=849;GPV=1;SPV=0.0043538;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:389:347,42:254,28:93,14
+chr9	60921369	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.0092021;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:9,2:2,4
+chr9	61155501	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:12,3:2,1
+chr9	61217953	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.019772;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:10,5:11,4
+chr9	62817309	.	T	G	0	PASS	DP=134;GPV=1;SPV=0.032022;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:51,14:30,10:21,4
+chr9	63285253	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr9	63294249	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:5,4:0,3
+chr9	63552393	.	A	C	0	PASS	DP=73;GPV=1;SPV=0.0060154;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:15,8:12,1
+chr9	63607657	.	G	A	0	PASS	DP=54;GPV=1;SPV=2.6077e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:8,4:5,7
+chr9	63756011	.	A	T	0	PASS	DP=149;GPV=1;SPV=0.034004;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:52,13:31,6:21,7
+chr9	63757580	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.028815;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:20,4:17,3
+chr9	63770649	.	T	C	0	PASS	DP=140;GPV=1;SPV=0.011638;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:54,15:24,7:30,8
+chr9	63777515	.	C	T	0	PASS	DP=78;GPV=1;SPV=0.013181;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:13,4:16,1
+chr9	63880093	.	TA	T	0	PASS	DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:11,3:15,2
+chr9	63990199	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:4,1:1,3
+chr9	64007863	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:5,4:10,3
+chr9	64340344	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.020195;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:7,8:10,2
+chr9	64377602	.	T	A	0	PASS	DP=44;GPV=1;SPV=0.049827;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:8,4:11,5
+chr9	64379465	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr9	64485419	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.027357;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:9,3:8,2
+chr9	64788946	.	A	G	0	PASS	DP=193;GPV=1;SPV=0.04678;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:85,13:68,7:17,6
+chr9	64977584	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:16,3:9,1
+chr9	65286138	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.0017867;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:5,2:7,8
+chr9	65400707	.	G	A	0	PASS	DP=60;GPV=1;SPV=4.0177e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,16:9,8:7,8
+chr9	65516350	.	A	T	0	PASS	DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:10,2:11,2
+chr9	65517345	.	ATT	A	0	PASS	DP=36;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:5,3:6,1
+chr9	65539927	.	G	A	0	PASS	DP=62;GPV=1;SPV=6.8069e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,11:12,7:6,4
+chr9	65577304	.	A	T	0	PASS	DP=56;GPV=1;SPV=0.016295;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:9,1:8,3
+chr9	65646095	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.032025;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:13,1:8,3
+chr9	65654536	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.028165;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:6,3:15,6
+chr9	66042320	.	G	C	0	PASS	DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:5,3:15,1
+chr9	66058307	.	AC	A	0	PASS	DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:2,1:8,8
+chr9	66066707	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:5,3:4,5
+chr9	66153735	.	G	T	0	PASS	DP=57;GPV=1;SPV=0.044429;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:9,2:14,2
+chr9	66386854	.	T	A	0	PASS	DP=46;GPV=1;SPV=0.02969;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:7,1:9,3
+chr9	66628778	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.020817;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:6,3:11,4
+chr9	66746618	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:5,1:1,2
+chr9	66803794	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.026881;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:12,4:12,6
+chr9	66833505	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,0:5,3
+chr9	67168091	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,3:7,1
+chr9	67363023	.	G	T	0	PASS	DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:5,1:11,3
+chr9	67388219	.	TAAC	T	0	PASS	DP=112;GPV=1;SPV=0.020257;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,12:18,7:17,5
+chr9	67587707	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:8,2:7,2
+chr9	67766314	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:0,0:12,4
+chr9	67877848	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:8,2:12,6
+chr9	68336611	.	T	C	0	PASS	DP=83;GPV=1;SPV=0.027436;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:26,9:9,1
+chr9	68648213	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:8,4:0,4
+chr9	69367680	.	A	T	0	PASS	DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:11,2:11,2
+chr9	70101358	.	G	GA	0	PASS	DP=40;GPV=1;SPV=0.0021946;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:6,6:4,4
+chr9	70505606	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:10,2:11,3
+chr9	71122950	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.0077271;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:11,5:12,1
+chr9	71282102	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.050426;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:6,4:7,1
+chr9	72378593	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.04247;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:11,3:6,2
+chr9	72388243	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:14:1,3:0,1:1,2
+chr9	72841870	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.0081572;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:16,5:5,1
+chr9	73594095	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,1:6,4
+chr9	74769141	.	T	A	0	PASS	DP=51;GPV=1;SPV=0.013481;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:11,4:11,3
+chr9	75996815	.	G	GT	0	PASS	DP=31;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,9:3,6:5,3
+chr9	76593952	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.020061;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:11,1:8,4
+chr9	76593953	.	AG	A	0	PASS	DP=45;GPV=1;SPV=0.049096;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:11,1:7,3
+chr9	77962892	.	C	CA	0	PASS	DP=22;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:2,3:3,2
+chr9	78608846	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.00019835;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:11,6:9,4
+chr9	80885401	.	C	G	0	PASS	DP=46;GPV=1;SPV=0.050713;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:15,3:8,3
+chr9	83144326	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,5:14,2:6,3
+chr9	83568955	.	GATAC	G	0	PASS	DP=54;GPV=1;SPV=0.042668;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:7,3:8,4
+chr9	85471484	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.00048402;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:5,8:7,4
+chr9	87251215	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,5:4,3:1,2
+chr9	88063283	.	A	G	0	PASS	DP=67;GPV=1;SPV=1.3691e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:11,6:8,7
+chr9	88136328	.	C	A	0	PASS	DP=80;GPV=1;SPV=0.03057;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:13,6:23,2
+chr9	88625472	.	T	TCTCTCCCTCTCC	0	PASS	DP=53;GPV=1;SPV=0.011726;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:14,4:4,1
+chr9	88625522	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.032477;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:7,2:3,4
+chr9	89182522	.	AAAAATAAAATAAAATAAAAT	A	0	PASS	DP=37;GPV=1;SPV=0.025931;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:8,3:3,3
+chr9	89589617	.	A	AAAG	0	PASS	DP=64;GPV=1;SPV=1.5201e-05;SS=2;SSC=48;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,11:9,5:6,6
+chr9	91037509	.	G	T	0	PASS	DP=83;GPV=1;SPV=8.0594e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:28,16:15,8:13,8
+chr9	94080988	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,3:6,1
+chr9	94267862	.	C	CTTT	0	PASS	DP=22;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:1,3:2,1
+chr9	95510348	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.0057488;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:9,10:7,2
+chr9	95514885	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.0072188;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:6,3:11,3
+chr9	98517892	.	AGGGAGTCAGAGGACCAGTGAGAGCCTAGC	A	0	PASS	DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:11,4:4,2
+chr9	98648114	.	T	TAGATAGATA	0	PASS	DP=38;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:7,3:5,4
+chr9	101780957	.	C	T	0	PASS	DP=51;GPV=1;SPV=1.587e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:4,6:4,5
+chr9	102198903	.	CA	C	0	PASS	DP=40;GPV=1;SPV=0.058905;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,4:10,2:6,2
+chr9	102921881	.	A	AAT	0	PASS	DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:2,2:2,2
+chr9	103351270	.	G	T	0	PASS	DP=63;GPV=1;SPV=7.0929e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:6,9:11,5
+chr9	103879939	.	C	CAA	0	PASS	DP=36;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,5:5,1:4,4
+chr9	104021349	.	C	CTG	0	PASS	DP=37;GPV=1;SPV=0.011586;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:3,3:8,2
+chr9	107603936	.	T	TTGTGTGTGTGTGTGTGTG	0	PASS	DP=33;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:8,5:1,1
+chr9	108051587	.	C	T	0	PASS	DP=64;GPV=1;SPV=2.6336e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:11,5:7,7
+chr9	109218126	.	C	CT	0	PASS	DP=18;GPV=1;SPV=0.024242;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:0,7:0,5:0,2
+chr9	109767959	.	AAAG	A	0	PASS	DP=47;GPV=1;SPV=0.018961;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:9,5:8,3
+chr9	110206331	.	A	T	0	PASS	DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:12,2:15,3
+chr9	110286333	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,3:3,1
+chr9	110342020	.	CA	C	0	PASS	DP=30;GPV=1;SPV=0.0015792;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:3,7:2,1
+chr9	110587698	.	T	G	0	PASS	DP=42;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,8:9,2:8,6
+chr9	112051428	.	T	G	0	PASS	DP=32;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,2:4,1:3,1
+chr9	112948023	.	CTTT	C	0	PASS	DP=33;GPV=1;SPV=0.012757;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:10,6:0,5
+chr9	113139456	.	G	A	0	PASS	DP=59;GPV=1;SPV=4.2046e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:11,5:5,12
+chr9	114134176	.	G	C	0	PASS	DP=34;GPV=1;SPV=0.014275;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:6,5:4,3
+chr9	114263662	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.023347;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:12,2:8,2
+chr9	114536637	.	ATTTTTTTTTT	A	0	PASS	DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,1:0,3
+chr9	114673471	.	C	CA	0	PASS	DP=27;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,5:6,4:2,1
+chr9	114674602	.	TTTCCTTCC	T	0	PASS	DP=30;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,4:1,2:7,2
+chr9	114676620	.	C	CTT	0	PASS	DP=35;GPV=1;SPV=0.0020202;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:0,8:0,6:0,2
+chr9	115237473	.	C	T	0	PASS	DP=53;GPV=1;SPV=5.8478e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:8,3:6,8
+chr9	116502775	.	G	GAAGA	0	PASS	DP=22;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,6:2,5:3,1
+chr9	116768315	.	CCA	C	0	PASS	DP=46;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:27:1,3:0,2:1,1
+chr9	116790954	.	GA	G	0	PASS	DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:7,5:2,3
+chr9	117533058	.	A	T	0	PASS	DP=56;GPV=1;SPV=0.00026967;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:8,3:8,6
+chr9	120906184	.	T	G	0	PASS	DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:6,2:9,2
+chr9	121838781	.	A	C	0	PASS	DP=53;GPV=1;SPV=0.048922;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,5:11,3:9,2
+chr9	125542054	.	A	ATC	0	PASS	DP=36;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:4,1:8,6
+chr9	125712706	.	AAAAATAT	A	0	PASS	DP=25;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,4:2,1:3,3
+chr9	126488366	.	T	A	0	PASS	DP=33;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,2:2,1:5,1
+chr9	126590106	.	G	GTATATA	0	PASS	DP=21;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:0,2:0,2:0,0
+chr9	126898606	.	T	TCACACA	0	PASS	DP=40;GPV=1;SPV=0.0021645;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,5:0,2:0,3
+chr9	127188056	.	CTT	C	0	PASS	DP=20;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,5:0,2:3,3
+chr9	130007239	.	C	CAAA	0	PASS	DP=30;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:2,4:3,1
+chr9	131045228	.	A	AACAAC	0	PASS	DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:6,5:8,5
+chr9	131516045	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:8,2:4,1:4,1
+chr9	132792212	.	T	A	0	PASS	DP=45;GPV=1;SPV=1.6547e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,11:4,3:5,8
+chr9	133016718	.	T	G	0	PASS	DP=32;GPV=1;SPV=0.042547;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:4,3:9,2
+chr9	134254139	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,3:1,1:5,2
+chr9	134873908	.	TG	T	0	PASS	DP=46;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:21:0,2:0,1:0,1
+chr9	135612181	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,2:5,1:2,1
+chr9	135838112	.	CAG	C	0	PASS	DP=25;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:3,2:2,5
+chr9	137039700	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.024173;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:14,3:12,2
+chr9	137496141	.	GT	G	0	PASS	DP=33;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:4,3:7,3
+chrM	1664	.	G	A	0	PASS	DP=14766;GPV=1;SPV=0;SS=2;SSC=255;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:7327:6522,805:3321,393:3201,412
+chrX	2973355	.	C	CA	0	PASS	DP=20;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:3,5:1,1
+chrX	3155718	.	A	ATC	0	PASS	DP=32;GPV=1;SPV=0.2381;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:3,3:2,2:1,1
+chrX	3155754	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,3:6,1
+chrX	8280848	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,1:4,3
+chrX	13713458	.	C	A	0	PASS	DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:2,1:2,3
+chrX	15427695	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.022239;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:5,2:7,3
+chrX	20818746	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.031621;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:3,2:2,1
+chrX	23610373	.	A	AGGAAGGAAGGAAAAAG	0	PASS	DP=25;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,5:5,2:2,3
+chrX	26106457	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,2:2,1:1,1
+chrX	26353521	.	T	A	0	PASS	DP=26;GPV=1;SPV=5.7608e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:1,8:1,6:0,2
+chrX	27322232	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,3:8,1
+chrX	27766301	.	T	TAGAG	0	PASS	DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:3,3:2,2
+chrX	32690279	.	A	C	0	PASS	DP=29;GPV=1;SPV=0.0063218;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,2:4,4
+chrX	38032389	.	G	A	0	PASS	DP=24;GPV=1;SPV=4.8074e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:1,11:0,4:1,7
+chrX	43673185	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,1:8,3
+chrX	44810964	.	T	G	0	PASS	DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,2:3,2
+chrX	45068823	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,5:5,1:0,4
+chrX	45302126	.	G	T	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,2:3,2
+chrX	48643102	.	G	GTATAT	0	PASS	DP=20;GPV=1;SPV=0.014448;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,2:0,2
+chrX	48659242	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.072581;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:3,1:4,1
+chrX	53786753	.	C	T	0	PASS	DP=31;GPV=1;SPV=5.6565e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:15:1,14:0,11:1,3
+chrX	54099013	.	CT	C	0	PASS	DP=16;GPV=1;SPV=0.0050505;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:1,7:0,6:1,1
+chrX	55647611	.	C	CTGTGTGTGTG	0	PASS	DP=25;GPV=1;SPV=0.0061703;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,7:1,6:2,1
+chrX	62965197	.	G	T	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chrX	62965210	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chrX	64894658	.	G	GT	0	PASS	DP=43;GPV=1;SPV=1.6438e-12;SS=2;SSC=117;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:25:0,25:0,10:0,15
+chrX	70800693	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:3,1:4,1
+chrX	74744921	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chrX	77254632	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.01049;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:2,7:1,6:1,1
+chrX	82026565	.	C	A	0	PASS	DP=26;GPV=1;SPV=0.00050167;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:1,2:3,5
+chrX	82724604	.	A	AT	0	PASS	DP=36;GPV=1;SPV=7.2702e-06;SS=2;SSC=51;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,11:3,9:2,2
+chrX	86997609	.	T	G	0	PASS	DP=29;GPV=1;SPV=0.00050744;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:3,3:2,4
+chrX	87737067	.	T	G	0	PASS	DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:8,1:2,4
+chrX	94877881	.	GT	G	0	PASS	DP=21;GPV=1;SPV=3.4022e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:1,9:0,4:1,5
+chrX	99460022	.	G	C	0	PASS	DP=20;GPV=1;SPV=5.9538e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:1,10:0,5:1,5
+chrX	100286017	.	TA	T	0	PASS	DP=22;GPV=1;SPV=0.0011258;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,4:1,2
+chrX	103534879	.	C	A	0	PASS	DP=25;GPV=1;SPV=0.0052174;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,4:3,2
+chrX	104311165	.	CT	C	0	PASS	DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:1,5:2,1
+chrX	105204934	.	T	G	0	PASS	DP=31;GPV=1;SPV=2.7282e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:2,20:0,7:2,13
+chrX	106315848	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.017857;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,3:0,3:0,0
+chrX	108607350	.	C	CA	0	PASS	DP=19;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:0,6:0,5:0,1
+chrX	108862017	.	C	T	0	PASS	DP=23;GPV=1;SPV=1.2237e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:0,9:0,2:0,7
+chrX	109511092	.	T	TA	0	PASS	DP=23;GPV=1;SPV=3.4022e-06;SS=2;SSC=54;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:0,9:0,3:0,6
+chrX	111316086	.	T	TA	0	PASS	DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:9,4:1,1
+chrX	116966675	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:5,3:9,2
+chrX	118885370	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,2:6,2
+chrX	125063861	.	G	A	0	PASS	DP=28;GPV=1;SPV=3.2871e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:0,12:0,6:0,6
+chrX	127570537	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:1,2:0,1:1,1
+chrX	127876849	.	T	C	0	PASS	DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:7,2:1,2
+chrX	128786380	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,1:9,3
+chrX	128786384	.	AG	A	0	PASS	DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:11,1:10,3
+chrX	129574322	.	T	G	0	PASS	DP=36;GPV=1;SPV=8.0605e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:18:4,14:3,7:1,7
+chrX	131132819	.	C	A	0	PASS	DP=27;GPV=1;SPV=9.2039e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:1,15:0,7:1,8
+chrX	131144086	.	G	A	0	PASS	DP=25;GPV=1;SPV=3.3652e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:15:1,14:0,6:1,8
+chrX	133295076	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.0088413;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,6:1,2:3,4
+chrX	141695017	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.0067977;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,3:3,3
+chrX	142355886	.	G	T	0	PASS	DP=35;GPV=1;SPV=0.00012759;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:3,3:3,5
+chrX	142569108	.	T	A	0	PASS	DP=20;GPV=1;SPV=5.4125e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,10:0,4:0,6
+chrX	142966123	.	G	A	0	PASS	DP=29;GPV=1;SPV=4.9975e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,10:1,6:3,4
+chrX	145887442	.	T	C	0	PASS	DP=28;GPV=1;SPV=3.2174e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:20:0,20:0,11:0,9
+chrX	147183945	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chrX	149418257	.	C	T	0	PASS	DP=26;GPV=1;SPV=1.8826e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,10:0,2:0,8
+chrX	151449442	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chrX	151718110	.	GAGGA	G	0	PASS	DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:2,3:3,4
+chrY	6605656	.	G	A	0	PASS	DP=33;GPV=1;SPV=3.6639e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:21:1,20:1,6:0,14
+chrY	8733140	.	C	G	0	PASS	DP=30;GPV=1;SPV=3.8442e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:2,9:1,5:1,4
+chrY	8843676	.	G	T	0	PASS	DP=28;GPV=1;SPV=7.6201e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:0,10:0,3:0,7
+chrY	10154028	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:6,1:1,4
+chrY	10823428	.	C	T	0	PASS	DP=28;GPV=1;SPV=4.6568e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:0,11:0,5:0,6
+chrY	11096116	.	CAGAT	C	0	PASS	DP=43;GPV=1;SPV=0.044194;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:4,1:8,5
+chrY	11101976	.	G	A	0	PASS	DP=75;GPV=1;SPV=0.028024;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:6,1:19,6
+chrY	11114766	.	G	C	0	PASS	DP=211;GPV=1;SPV=0.022997;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:85,16:36,6:49,10
+chrY	11167265	.	C	T	0	PASS	DP=197;GPV=1;SPV=0.04954;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:91,14:65,9:26,5
+chrY	11170829	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.02607;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,3:6,1
+chrY	11179197	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0030496;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:15,8:11,1
+chrY	11200714	.	T	C	0	PASS	DP=150;GPV=1;SPV=0.02431;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:64,13:39,7:25,6
+chrY	11218441	.	T	G	0	PASS	DP=66;GPV=1;SPV=0.036947;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,6:13,1:8,5
+chrY	11237773	.	A	ATTTT	0	PASS	DP=194;GPV=1;SPV=0.025539;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:53,11:24,5:29,6
+chrY	11565379	.	T	A	0	PASS	DP=378;GPV=1;SPV=0.0071414;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:185:152,33:71,12:81,21
+chrY	14137338	.	GA	G	0	PASS	DP=25;GPV=1;SPV=0.00034998;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,9:2,5:2,4
+chrY	14935493	.	C	A	0	PASS	DP=25;GPV=1;SPV=8.3212e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:1,8:1,3:0,5
+chrY	17397837	.	A	G	0	PASS	DP=31;GPV=1;SPV=5.3237e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:1,15:0,6:1,9
+chrY	20279911	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.0013381;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:8,3:3,7
+chrY	21298142	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.074074;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chrY	24688602	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,2:6,2:0,0
+chrY	56714262	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chrY	56721070	.	G	C	0	PASS	DP=208;GPV=1;SPV=0.041206;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:90,11:47,4:43,7
+chrY	56860161	.	A	T	0	PASS	DP=584;GPV=1;SPV=0.012228;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:284:245,39:142,20:103,19
+chrY	56884320	.	TCAAAAAA	T	0	PASS	DP=165;GPV=1;SPV=0.025188;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:52,14:24,4:28,10
+chrY	56885135	.	C	G	0	PASS	DP=324;GPV=1;SPV=0.017498;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:167:145,22:63,15:82,7
diff -r 000000000000 -r 924c527fb379 test-data/EGF089.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/EGF089.vcf	Sun Sep 13 18:40:29 2020 +0000
@@ -0,0 +1,4413 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##reference=hg38
+##source=varscan.py
+##contig=<ID=chr1,length=248956422>
+##contig=<ID=chr10,length=133797422>
+##contig=<ID=chr11,length=135086622>
+##contig=<ID=chr12,length=133275309>
+##contig=<ID=chr13,length=114364328>
+##contig=<ID=chr14,length=107043718>
+##contig=<ID=chr15,length=101991189>
+##contig=<ID=chr16,length=90338345>
+##contig=<ID=chr17,length=83257441>
+##contig=<ID=chr18,length=80373285>
+##contig=<ID=chr19,length=58617616>
+##contig=<ID=chr2,length=242193529>
+##contig=<ID=chr20,length=64444167>
+##contig=<ID=chr21,length=46709983>
+##contig=<ID=chr22,length=50818468>
+##contig=<ID=chr3,length=198295559>
+##contig=<ID=chr4,length=190214555>
+##contig=<ID=chr5,length=181538259>
+##contig=<ID=chr6,length=170805979>
+##contig=<ID=chr7,length=159345973>
+##contig=<ID=chr8,length=145138636>
+##contig=<ID=chr9,length=138394717>
+##contig=<ID=chrM,length=16569>
+##contig=<ID=chrX,length=156040895>
+##contig=<ID=chrY,length=57227415>
+##filter="SOMATIC"
+##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
+##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
+##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
+##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
+##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
+##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
+##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
+##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
+##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads">
+##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05">
+##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90">
+##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1">
+##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1">
+##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100">
+##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15">
+##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15">
+##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01">
+##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90">
+##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1">
+##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1">
+##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15">
+##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15">
+##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100">
+##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50">
+##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50">
+##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50">
+##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50">
+##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
+##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand">
+##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TUMOR
+chr1	109575	.	CGTGT	C	0	PASS	DP=70;GPV=1;SPV=0.035881;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,10:10,5:17,5
+chr1	109580	.	G	A	0	PASS	DP=83;GPV=1;SPV=0.0062666;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:13,7:22,4
+chr1	136733	.	G	T	0	PASS	DP=51;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:13,4:13,1
+chr1	183800	.	C	G	0	PASS	DP=506;GPV=1;SPV=0.0068358;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:288:251,37:120,16:131,21
+chr1	188062	.	A	C	0	PASS	DP=68;GPV=1;SPV=0.041617;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:21,6:5,2
+chr1	464057	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.019428;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:7,5:12,6
+chr1	608256	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:13,3:2,1
+chr1	857687	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,1:5,3
+chr1	1030397	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.33518;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,2:12,2
+chr1	1134829	.	GA	G	0	PASS	DP=94;GPV=1;SPV=0.016677;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:42,17:21,10:21,7
+chr1	2432621	.	G	A	0	PASS	DP=122;GPV=1;SPV=8.6397e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:45,15:25,8:20,7
+chr1	2671789	.	A	T	0	PASS	DP=199;GPV=1;SPV=0.044752;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:91,12:71,10:20,2
+chr1	3066327	.	C	T	0	PASS	DP=120;GPV=1;SPV=7.263e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:47,17:26,7:21,10
+chr1	3868678	.	C	G	0	PASS	DP=67;GPV=1;SPV=0.025178;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,7:16,2:4,5
+chr1	4644163	.	A	C	0	PASS	DP=88;GPV=1;SPV=0.0011965;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:8,3:24,5
+chr1	6516868	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.020689;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:5,4:10,1
+chr1	6516870	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.027709;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,4:14,1
+chr1	7219542	.	T	TAA	0	PASS	DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,4:6,3:3,1
+chr1	7310714	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:3,2:13,2
+chr1	8276928	.	C	A	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:5,1:2,1
+chr1	8366917	.	A	C	0	PASS	DP=61;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:3,2:3,2:0,0
+chr1	8501943	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:7,2:4,1:3,1
+chr1	10014390	.	C	CT	0	PASS	DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:15,3:17,4
+chr1	11718315	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.021848;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:4,4:1,1
+chr1	11997879	.	C	CTTT	0	PASS	DP=35;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:9,4:7,1
+chr1	13242734	.	TTACAAAGAACCTTCTTAAGGGTGGGGGAGAC	T	0	PASS	DP=139;GPV=1;SPV=0.0045646;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:59,7:29,4:30,3
+chr1	15904478	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,7:3,2:5,5
+chr1	15904479	.	T	A	0	PASS	DP=37;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:3,2:9,5
+chr1	16112755	.	T	C	0	PASS	DP=100;GPV=1;SPV=0.00022955;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:20,8:24,6
+chr1	16512652	.	C	A	0	PASS	DP=259;GPV=1;SPV=0.031459;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:115,19:78,16:37,3
+chr1	16516845	.	T	G	0	PASS	DP=215;GPV=1;SPV=0.02177;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:85,19:26,7:59,12
+chr1	16535787	.	G	A	0	PASS	DP=509;GPV=1;SPV=0.030136;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:293:262,31:136,23:126,8
+chr1	16550749	.	C	A	0	PASS	DP=207;GPV=1;SPV=0.019915;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:112:92,20:51,8:41,12
+chr1	16594434	.	T	C	0	PASS	DP=474;GPV=1;SPV=0.00152;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:259:226,33:111,16:115,17
+chr1	16595518	.	C	T	0	PASS	DP=358;GPV=1;SPV=0.049846;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:194:164,30:84,14:80,16
+chr1	16606649	.	A	G	0	PASS	DP=488;GPV=1;SPV=0.01332;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:265:227,38:123,21:104,17
+chr1	16611797	.	G	A	0	PASS	DP=458;GPV=1;SPV=0.022882;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:201,32:99,15:102,17
+chr1	16623756	.	AG	A	0	PASS	DP=541;GPV=1;SPV=0.026576;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:272:241,31:141,22:100,9
+chr1	16626425	.	G	A	0	PASS	DP=463;GPV=1;SPV=0.046149;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:247:216,31:98,18:118,13
+chr1	16628965	.	G	A	0	PASS	DP=423;GPV=1;SPV=0.028487;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:247:215,32:107,17:108,15
+chr1	16652640	.	G	A	0	PASS	DP=172;GPV=1;SPV=0.0084969;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:71,19:40,16:31,3
+chr1	16735009	.	T	A	0	PASS	DP=53;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:23,4:0,0
+chr1	16874574	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.0048994;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:34,16:20,11:14,5
+chr1	17367486	.	G	GTCTTTTGTGTGGGAGTCGACTTTCCCAC	0	PASS	DP=70;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:30,9:12,6:18,3
+chr1	17658621	.	C	T	0	PASS	DP=87;GPV=1;SPV=8.648e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:15,7:16,5
+chr1	17683340	.	G	C	0	PASS	DP=50;GPV=1;SPV=0.0055436;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:10,9:7,1
+chr1	18286956	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.00073529;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:22,5:19,7
+chr1	18296624	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.00039485;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:19,5:16,5
+chr1	18611271	.	G	GAGGAAGGA	0	PASS	DP=57;GPV=1;SPV=0.064666;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:21,3:4,1
+chr1	20011131	.	C	CA	0	PASS	DP=95;GPV=1;SPV=0.042596;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:50,6:24,5:26,1
+chr1	20647466	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,8:14,6:2,2
+chr1	23487144	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.023812;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,7:9,4:7,3
+chr1	23703868	.	AATAT	A	0	PASS	DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:16,2:11,2
+chr1	24189141	.	T	TTCTC	0	PASS	DP=69;GPV=1;SPV=0.040489;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:9,4:11,4
+chr1	25875571	.	C	T	0	PASS	DP=102;GPV=1;SPV=4.2157e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:21,10:21,6
+chr1	26158356	.	G	A	0	PASS	DP=111;GPV=1;SPV=2.4863e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:45,16:25,12:20,4
+chr1	26435430	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,6:3,3:5,3
+chr1	26803792	.	A	AC	0	PASS	DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:16,1:12,3
+chr1	27277036	.	T	C	0	PASS	DP=79;GPV=1;SPV=0.068062;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:23,3:19,2
+chr1	28303493	.	CT	C	0	PASS	DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:18,3:12,1
+chr1	29365423	.	T	TCTCTCC	0	PASS	DP=44;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,4:7,2:9,2
+chr1	29554795	.	A	ATGTGCTGTGGTGTGGCATGGTGTGTGTG	0	PASS	DP=49;GPV=1;SPV=0.0054024;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,7:11,4:5,3
+chr1	29723904	.	TACC	T	0	PASS	DP=34;GPV=1;SPV=0.00072598;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,10:5,5:1,5
+chr1	31154909	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.001715;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:19,5:16,6
+chr1	33404286	.	T	G	0	PASS	DP=90;GPV=1;SPV=0.00013825;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:24,4:8,7
+chr1	35116835	.	A	ATTT	0	PASS	DP=29;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,6:2,4:4,2
+chr1	35238703	.	T	TAA	0	PASS	DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,3:6,1
+chr1	35705018	.	AAGAAAGAGAGAGAGAGAG	A	0	PASS	DP=47;GPV=1;SPV=0.28542;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,6:23,4:8,2
+chr1	36449835	.	CA	C	0	PASS	DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,3:6,1
+chr1	37414047	.	CTT	C	0	PASS	DP=42;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:10,7:5,5:5,2
+chr1	37980841	.	CT	C	0	PASS	DP=35;GPV=1;SPV=0.012681;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:6,9:5,4
+chr1	39138072	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,10:9,9:6,1
+chr1	39505985	.	C	CAA	0	PASS	DP=56;GPV=1;SPV=0.022251;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,8:15,4:4,4
+chr1	40558252	.	A	G	0	PASS	DP=73;GPV=1;SPV=0.083965;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:17,2:19,2
+chr1	40670574	.	T	TTATATATATATATATA	0	PASS	DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:2,2:2,3
+chr1	43875897	.	CTCTTCTTCTTCTTCTTCTTCTTCT	C	0	PASS	DP=48;GPV=1;SPV=0.031499;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,11:6,2:13,9
+chr1	44046539	.	T	A	0	PASS	DP=77;GPV=1;SPV=0.0063642;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:16,9:9,6:7,3
+chr1	44415506	.	C	T	0	PASS	DP=103;GPV=1;SPV=0.0058868;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:19,6:18,4
+chr1	45520723	.	CA	C	0	PASS	DP=60;GPV=1;SPV=0.034818;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,8:10,7:11,1
+chr1	45727494	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:0,0:29,4
+chr1	45762019	.	A	G	0	PASS	DP=99;GPV=1;SPV=2.2816e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:21,4:11,8
+chr1	46101980	.	C	CTT	0	PASS	DP=49;GPV=1;SPV=0.034857;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:10,10:12,2
+chr1	46272025	.	CTTTTTTTTT	C	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:3,3:7,1
+chr1	47588411	.	T	G	0	PASS	DP=89;GPV=1;SPV=0.011956;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:19,14:13,8:6,6
+chr1	47653083	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:2,3:5,1
+chr1	48827995	.	T	TACAC	0	PASS	DP=54;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,7:11,4:5,3
+chr1	50692241	.	CTGTG	C	0	PASS	DP=63;GPV=1;SPV=0.011329;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,9:9,7:6,2
+chr1	54704793	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.007971;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,5:2,1
+chr1	54780507	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.0014835;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:14,8:5,5:9,3
+chr1	56647364	.	T	C	0	PASS	DP=108;GPV=1;SPV=2.1555e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:18,9:25,7
+chr1	57555025	.	ATTTT	A	0	PASS	DP=38;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:4,3:6,3
+chr1	57735609	.	GTT	G	0	PASS	DP=38;GPV=1;SPV=0.0095308;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:10,3:2,3
+chr1	58473549	.	T	A	0	PASS	DP=92;GPV=1;SPV=0.011682;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:28,15:12,8:16,7
+chr1	59955307	.	C	CATAT	0	PASS	DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:20,2:16,2
+chr1	61347165	.	C	CTT	0	PASS	DP=46;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,6:4,3:9,3
+chr1	62838780	.	C	CA	0	PASS	DP=84;GPV=1;SPV=0.0011955;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,9:21,8:11,1
+chr1	65375282	.	A	G	0	PASS	DP=97;GPV=1;SPV=0.00037424;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:15,5:26,7
+chr1	66187579	.	A	G	0	PASS	DP=109;GPV=1;SPV=0.045403;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:52,10:28,9:24,1
+chr1	67259965	.	G	GA	0	PASS	DP=37;GPV=1;SPV=0.017612;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:9,7:5,1
+chr1	67482066	.	G	GTTTTTT	0	PASS	DP=34;GPV=1;SPV=0.29549;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:10,3:10,1
+chr1	68737235	.	T	G	0	PASS	DP=63;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:14,5:15,1
+chr1	70237513	.	C	T	0	PASS	DP=117;GPV=1;SPV=2.9469e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:47,15:27,8:20,7
+chr1	72895693	.	G	GTT	0	PASS	DP=69;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:5,5:3,2:2,3
+chr1	73747985	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.0079864;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:9,7:2,3:7,4
+chr1	74224724	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.0013656;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:18,5:20,6
+chr1	74722610	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.039635;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:17,5:14,3
+chr1	75886415	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.0088091;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:10,4:8,1
+chr1	75886416	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.0082105;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:12,4:8,1
+chr1	77367763	.	A	ATGTAAT	0	PASS	DP=19;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,2:0,1:4,1
+chr1	77475382	.	ATATATG	A	0	PASS	DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,3:6,1
+chr1	78838429	.	ATTTTTTTTTTTTT	A	0	PASS	DP=62;GPV=1;SPV=0.030781;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,9:11,5:10,4
+chr1	78840128	.	T	G	0	PASS	DP=96;GPV=1;SPV=0.0015624;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:49,14:25,5:24,9
+chr1	79559217	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.0022144;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:14,1:21,9
+chr1	80455065	.	GTTTT	G	0	PASS	DP=44;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,5:15,4:4,1
+chr1	84245172	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.011783;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,5:6,4:3,1
+chr1	85409396	.	C	T	0	PASS	DP=104;GPV=1;SPV=4.1341e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:24,9:19,7
+chr1	85914304	.	A	ATG	0	PASS	DP=49;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:8,10:3,7:5,3
+chr1	88623526	.	A	T	0	PASS	DP=66;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:3,3:3,1:0,2
+chr1	90311030	.	T	TTTCCTTCCTTCC	0	PASS	DP=74;GPV=1;SPV=0.0042046;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,9:11,5:20,4
+chr1	90499440	.	A	G	0	PASS	DP=93;GPV=1;SPV=0.010217;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,8:20,5:26,3
+chr1	92412374	.	C	CTTT	0	PASS	DP=56;GPV=1;SPV=0.19282;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,4:12,1:15,3
+chr1	93053223	.	T	G	0	PASS	DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:4,2:15,2
+chr1	93126159	.	T	G	0	PASS	DP=71;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:1,2:0,1:1,1
+chr1	94591266	.	A	C	0	PASS	DP=67;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,4:16,3:10,1
+chr1	94881184	.	C	G	0	PASS	DP=110;GPV=1;SPV=0.00080381;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:49,11:27,4:22,7
+chr1	97529514	.	T	C	0	PASS	DP=95;GPV=1;SPV=1.9106e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:38,18:18,9:20,9
+chr1	99708626	.	ATAT	A	0	PASS	DP=22;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,4:2,3:1,1
+chr1	100028321	.	GTT	G	0	PASS	DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:28,2:14,4
+chr1	101750012	.	T	G	0	PASS	DP=86;GPV=1;SPV=1.1832e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:32,18:18,8:14,10
+chr1	102118219	.	GCAA	G	0	PASS	DP=101;GPV=1;SPV=0.013188;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:55,9:37,6:18,3
+chr1	103195970	.	CTT	C	0	PASS	DP=43;GPV=1;SPV=0.02905;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:4,1:15,5
+chr1	103196013	.	TTC	T	0	PASS	DP=32;GPV=1;SPV=0.0071858;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:2,1:9,7
+chr1	103320217	.	A	G	0	PASS	DP=83;GPV=1;SPV=0.015638;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:14,2:17,5
+chr1	105071539	.	A	ACTCTCTCTCTCTCTCT	0	PASS	DP=50;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,6:6,5:8,1
+chr1	105075289	.	T	TATAC	0	PASS	DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:15,2:5,4
+chr1	105176574	.	C	G	0	PASS	DP=104;GPV=1;SPV=7.3001e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:42,14:17,6:25,8
+chr1	106711994	.	T	TGA	0	PASS	DP=67;GPV=1;SPV=0.056165;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,5:13,2:20,3
+chr1	108227490	.	A	C	0	PASS	DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,0:5,3
+chr1	108241901	.	C	G	0	PASS	DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:0,0:17,4
+chr1	108489196	.	G	GT	0	PASS	DP=81;GPV=1;SPV=0.027875;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:14,2:16,2
+chr1	108489197	.	C	G	0	PASS	DP=75;GPV=1;SPV=0.033417;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,5:15,3:18,2
+chr1	108523875	.	TATATATATG	T	0	PASS	DP=59;GPV=1;SPV=0.12939;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,4:16,2:13,2
+chr1	109469827	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.0065559;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:8,6:1,1
+chr1	113423259	.	T	TG	0	PASS	DP=37;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:10,9:0,1
+chr1	114024625	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:5,8:2,2
+chr1	114784814	.	C	CTTTTTTTT	0	PASS	DP=64;GPV=1;SPV=0.046785;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:14,8:8,1
+chr1	116830698	.	T	TTCTC	0	PASS	DP=34;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:8,9:2,8:6,1
+chr1	117137454	.	C	A	0	PASS	DP=85;GPV=1;SPV=0.022846;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:21,2:15,3
+chr1	118312815	.	GC	G	0	PASS	DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:6,3:5,3
+chr1	120061685	.	T	G	0	PASS	DP=59;GPV=1;SPV=0.039481;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:7,10:22,2
+chr1	120118304	.	T	C	0	PASS	DP=114;GPV=1;SPV=0.0081296;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:45,13:30,11:15,2
+chr1	120120057	.	T	G	0	PASS	DP=98;GPV=1;SPV=0.024659;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:52,7:26,6:26,1
+chr1	120122567	.	T	C	0	PASS	DP=109;GPV=1;SPV=0.036338;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:56,13:27,10:29,3
+chr1	120124322	.	G	C	0	PASS	DP=116;GPV=1;SPV=0.012563;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:52,12:26,8:26,4
+chr1	120147514	.	CT	C	0	PASS	DP=119;GPV=1;SPV=0.042357;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:57,13:29,2:28,11
+chr1	120199379	.	C	CCTCT	0	PASS	DP=105;GPV=1;SPV=0.0027718;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:30,18:13,6:17,12
+chr1	120511371	.	G	A	0	PASS	DP=141;GPV=1;SPV=0.045519;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:75,21:30,9:45,12
+chr1	120865334	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,3:9,1
+chr1	120920945	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.083411;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:24,4:15,1
+chr1	121006911	.	C	G	0	PASS	DP=128;GPV=1;SPV=0.014857;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:60,20:21,17:39,3
+chr1	121017426	.	A	G	0	PASS	DP=108;GPV=1;SPV=0.0489;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:50,12:29,10:21,2
+chr1	121035524	.	C	G	0	PASS	DP=112;GPV=1;SPV=0.0051375;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:58,10:32,5:26,5
+chr1	121070056	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.096448;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,2:14,2
+chr1	121123014	.	T	C	0	PASS	DP=60;GPV=1;SPV=0.028548;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:15,7:9,4
+chr1	121123034	.	G	C	0	PASS	DP=78;GPV=1;SPV=0.0030354;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:18,9:11,5
+chr1	121295036	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.14592;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:21,3:8,2
+chr1	121312943	.	G	T	0	PASS	DP=81;GPV=1;SPV=0.025682;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:21,3:14,2
+chr1	121375318	.	C	CT	0	PASS	DP=43;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,7:6,4:6,3
+chr1	121398942	.	G	A	0	PASS	DP=105;GPV=1;SPV=0.0053111;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:39,16:12,10:27,6
+chr1	121655844	.	C	A	0	PASS	DP=19;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:5,3:0,0
+chr1	121662952	.	C	T	0	PASS	DP=112;GPV=1;SPV=0.02099;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:46,7:18,2:28,5
+chr1	121769292	.	T	C	0	PASS	DP=136;GPV=1;SPV=0.0098206;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:74,9:29,7:45,2
+chr1	121918780	.	T	A	0	PASS	DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:19,1:2,4
+chr1	121938737	.	C	T	0	PASS	DP=88;GPV=1;SPV=0.039155;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:18,4:24,1
+chr1	121951935	.	G	C	0	PASS	DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:17,2:8,3
+chr1	121952283	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.010627;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,14:15,7:10,7
+chr1	122122886	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:16,3:1,1
+chr1	122164394	.	T	C	0	PASS	DP=98;GPV=1;SPV=0.015096;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:24,4:20,2
+chr1	122164557	.	A	T	0	PASS	DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:3,1:12,6
+chr1	122290901	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.060567;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:27,1:4,3
+chr1	123692217	.	G	C	0	PASS	DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:36,4:0,0
+chr1	123845299	.	C	A	0	PASS	DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:6,1:19,3
+chr1	124786953	.	G	C	0	PASS	DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:22,3:9,2
+chr1	124788615	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:5,5:0,1
+chr1	124804266	.	T	A	0	PASS	DP=156;GPV=1;SPV=0.010263;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:64,12:45,9:19,3
+chr1	124819244	.	A	T	0	PASS	DP=64;GPV=1;SPV=0.036822;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:17,3:15,3
+chr1	124832181	.	T	G	0	PASS	DP=39;GPV=1;SPV=0.0079695;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:11,6:4,2
+chr1	124833991	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.039036;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:19,3:12,2
+chr1	124866881	.	T	A	0	PASS	DP=237;GPV=1;SPV=0.023164;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:114,17:76,11:38,6
+chr1	125135958	.	C	G	0	PASS	DP=211;GPV=1;SPV=0.00014152;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:86,29:34,5:52,24
+chr1	125135961	.	A	T	0	PASS	DP=220;GPV=1;SPV=0.00031663;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:121:93,28:34,5:59,23
+chr1	125170319	.	T	G	0	PASS	DP=64;GPV=1;SPV=0.082408;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:1,3:30,1
+chr1	125178301	.	A	C	0	PASS	DP=13569;GPV=1;SPV=9.8163e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:6911:6057,728:633,39:5424,689
+chr1	125182272	.	G	A	0	PASS	DP=12697;GPV=1;SPV=0.0060736;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:6772:6000,739:5014,473:986,266
+chr1	143185845	.	C	T	0	PASS	DP=548;GPV=1;SPV=0.00057945;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:359:289,68:177,52:112,16
+chr1	143187209	.	A	C	0	PASS	DP=1386;GPV=1;SPV=0.0018903;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:813:721,90:227,40:494,50
+chr1	143194773	.	A	T	0	PASS	DP=154;GPV=1;SPV=0.031672;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:77,14:31,3:46,11
+chr1	143201663	.	G	A	0	PASS	DP=638;GPV=1;SPV=0.01979;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:396:346,47:107,19:239,28
+chr1	143210881	.	C	T	0	PASS	DP=1180;GPV=1;SPV=0.0011506;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:732:648,79:617,41:31,38
+chr1	143214275	.	A	G	0	PASS	DP=8966;GPV=1;SPV=0.0034751;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:5453:4819,619:4117,404:702,215
+chr1	143214277	.	C	G	0	PASS	DP=9389;GPV=1;SPV=0.0017894;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:5732:5012,625:4106,424:906,201
+chr1	143237848	.	T	A	0	PASS	DP=3596;GPV=1;SPV=0.036833;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:2154:1930,219:1400,145:530,74
+chr1	143245469	.	A	G	0	PASS	DP=1075;GPV=1;SPV=0.022884;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:641:554,79:532,74:22,5
+chr1	143324676	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:0,0:14,4
+chr1	143505908	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.3167;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:22,4:6,1
+chr1	143743001	.	ATGTG	A	0	PASS	DP=80;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:32,12:21,9:11,3
+chr1	143769128	.	T	C	0	PASS	DP=133;GPV=1;SPV=0.025318;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:75,18:44,9:31,9
+chr1	143791240	.	C	A	0	PASS	DP=36;GPV=1;SPV=0.21414;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:17,4:5,1
+chr1	143816122	.	C	A	0	PASS	DP=55;GPV=1;SPV=1.1349e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:13,22:5,10:8,12
+chr1	143876753	.	C	CTA	0	PASS	DP=65;GPV=1;SPV=0.0094722;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,8:19,5:7,3
+chr1	143908474	.	G	T	0	PASS	DP=160;GPV=1;SPV=0.041053;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:97,18:45,2:52,16
+chr1	144103951	.	G	A	0	PASS	DP=160;GPV=1;SPV=0.037815;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:86,16:46,13:40,3
+chr1	144484369	.	C	CA	0	PASS	DP=82;GPV=1;SPV=0.048523;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,7:32,6:14,1
+chr1	144592574	.	A	G	0	PASS	DP=53;GPV=1;SPV=0.058582;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:16,5:12,1
+chr1	144592578	.	G	GA	0	PASS	DP=41;GPV=1;SPV=0.086254;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,7:14,6:6,1
+chr1	144827138	.	A	G	0	PASS	DP=119;GPV=1;SPV=0.041942;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:73,15:27,2:46,13
+chr1	144827697	.	A	AATG	0	PASS	DP=44;GPV=1;SPV=0.053126;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:4,1:19,6
+chr1	144827768	.	TTAAA	T	0	PASS	DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:2,1:34,3
+chr1	144988999	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:5,8:9,4
+chr1	145136580	.	A	G	0	PASS	DP=131;GPV=1;SPV=0.019561;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:63,12:37,10:26,2
+chr1	145162688	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.02761;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:16,5:7,6
+chr1	145411387	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,17:6,11:11,6
+chr1	145445127	.	C	CT	0	PASS	DP=57;GPV=1;SPV=0.035929;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:10,9:13,3
+chr1	146333614	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.0097372;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:11,6:9,6
+chr1	146397990	.	G	C	0	PASS	DP=77;GPV=1;SPV=2.7941e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:29,18:13,8:16,10
+chr1	146443480	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.0037023;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:8,1:15,8
+chr1	146717129	.	CTTTTT	C	0	PASS	DP=32;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,7:7,6:4,1
+chr1	147090778	.	C	CTTTTTTT	0	PASS	DP=58;GPV=1;SPV=0.18565;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:26,2:11,3
+chr1	148239596	.	CT	C	0	PASS	DP=94;GPV=1;SPV=0.023047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:48,18:28,12:20,6
+chr1	148471265	.	T	TACACAC	0	PASS	DP=69;GPV=1;SPV=0.045222;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,11:18,5:15,6
+chr1	148474192	.	GTT	G	0	PASS	DP=36;GPV=1;SPV=0.37843;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,4:19,3:4,1
+chr1	149058110	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.021975;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:11,5:11,3
+chr1	149157370	.	T	C	0	PASS	DP=150;GPV=1;SPV=0.02174;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:73,18:49,5:24,13
+chr1	149176407	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.029779;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:28,14:17,7:11,7
+chr1	149398307	.	T	G	0	PASS	DP=80;GPV=1;SPV=0.00019831;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:26,34:12,13:14,21
+chr1	149424393	.	T	G	0	PASS	DP=68;GPV=1;SPV=0.0010994;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,17:11,5:12,12
+chr1	149475128	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.017006;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:10,5:9,5
+chr1	149528005	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.023166;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,1:5,4
+chr1	149569833	.	C	T	0	PASS	DP=174;GPV=1;SPV=0.040363;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:86,18:38,12:48,6
+chr1	149583520	.	A	C	0	PASS	DP=65;GPV=1;SPV=0.15137;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,4:27,1:7,3
+chr1	149602017	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.016573;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:18,1:12,6
+chr1	149609586	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.0040088;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:18,9:10,2
+chr1	149634139	.	GCCCCCACCGA	G	0	PASS	DP=69;GPV=1;SPV=0.024131;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:17,6:15,4
+chr1	149644757	.	AC	A	0	PASS	DP=76;GPV=1;SPV=0.016341;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,6:15,4:10,2
+chr1	149685676	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:11,4:10,1
+chr1	149771820	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.13128;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:13,2:14,3
+chr1	149789393	.	A	AAATAATAATAATAATAAT	0	PASS	DP=114;GPV=1;SPV=0.00012454;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:53,17:26,13:27,4
+chr1	150020956	.	C	T	0	PASS	DP=117;GPV=1;SPV=1.3844e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:52,21:24,11:28,10
+chr1	150724165	.	C	CTT	0	PASS	DP=44;GPV=1;SPV=0.045954;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:17,10:8,8:9,2
+chr1	150775822	.	ATTT	A	0	PASS	DP=44;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,6:13,3:4,3
+chr1	151999734	.	G	A	0	PASS	DP=127;GPV=1;SPV=0.00016247;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:67,22:30,10:37,12
+chr1	153558554	.	G	T	0	PASS	DP=127;GPV=1;SPV=0.018547;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:74,9:44,6:30,3
+chr1	154113157	.	TA	T	0	PASS	DP=117;GPV=1;SPV=0.02492;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:70,9:29,3:41,6
+chr1	154593135	.	C	CAAA	0	PASS	DP=59;GPV=1;SPV=0.040919;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:19,16:12,14:7,2
+chr1	154714319	.	G	GGTGTGTGTGGGGT	0	PASS	DP=93;GPV=1;SPV=0.074687;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:52,6:22,4:30,2
+chr1	155065700	.	CTTTATTTATTTA	C	0	PASS	DP=94;GPV=1;SPV=0.0036289;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:15,5:24,10
+chr1	155584670	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.20137;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:27,3:3,1
+chr1	156617351	.	C	CTT	0	PASS	DP=64;GPV=1;SPV=0.010745;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,16:15,13:7,3
+chr1	156756793	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.052073;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,6:19,5:9,1
+chr1	156787448	.	TTG	T	0	PASS	DP=55;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:8,8:6,7:2,1
+chr1	156979361	.	C	CTT	0	PASS	DP=59;GPV=1;SPV=0.010186;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,14:16,12:13,2
+chr1	157035934	.	T	G	0	PASS	DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:15,3:15,1
+chr1	157274173	.	C	CTTT	0	PASS	DP=32;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:5,2:7,2
+chr1	158084688	.	T	C	0	PASS	DP=122;GPV=1;SPV=0.0029786;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:63,11:25,3:38,8
+chr1	160569542	.	G	A	0	PASS	DP=118;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:25,5:8,3:17,2
+chr1	160973841	.	C	CTT	0	PASS	DP=30;GPV=1;SPV=0.1532;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,6:6,5:7,1
+chr1	161097738	.	G	C	0	PASS	DP=66;GPV=1;SPV=0.012533;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:16,9:6,7:10,2
+chr1	161443332	.	G	A	0	PASS	DP=151;GPV=1;SPV=0.011182;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:88,10:30,2:58,8
+chr1	161513933	.	G	A	0	PASS	DP=148;GPV=1;SPV=0.024873;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:81,15:43,4:38,11
+chr1	161629853	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.32052;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:32,2:2,2
+chr1	161981444	.	C	A	0	PASS	DP=139;GPV=1;SPV=0.0009232;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:73,14:23,2:50,12
+chr1	162403503	.	AAAAAAAAAATATATATATATAT	A	0	PASS	DP=57;GPV=1;SPV=0.20823;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:16,1:19,3
+chr1	164776899	.	TTGTGTG	T	0	PASS	DP=54;GPV=1;SPV=0.01792;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,13:16,9:7,4
+chr1	164793872	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:6,4:10,1
+chr1	165117026	.	C	T	0	PASS	DP=126;GPV=1;SPV=1.6016e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:58,22:30,13:28,9
+chr1	165591334	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:6,1:14,3
+chr1	165695487	.	CT	C	0	PASS	DP=32;GPV=1;SPV=0.0083313;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,7:5,2
+chr1	167111513	.	TACAC	T	0	PASS	DP=43;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:7,4:2,1:5,3
+chr1	168153906	.	CAA	C	0	PASS	DP=54;GPV=1;SPV=0.0093016;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,15:12,12:9,3
+chr1	168466949	.	C	T	0	PASS	DP=133;GPV=1;SPV=0.003938;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:76,13:43,9:33,4
+chr1	169997884	.	A	G	0	PASS	DP=68;GPV=1;SPV=0.031247;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:22,12:13,10:9,2
+chr1	170166140	.	C	CT	0	PASS	DP=67;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:5,6:1,2:4,4
+chr1	170331019	.	A	AT	0	PASS	DP=116;GPV=1;SPV=0.0030735;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:65,14:33,4:32,10
+chr1	171694664	.	G	GAA	0	PASS	DP=78;GPV=1;SPV=0.11157;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,5:19,3:18,2
+chr1	174795790	.	G	T	0	PASS	DP=142;GPV=1;SPV=0.00059571;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:81,20:46,13:35,7
+chr1	174973979	.	GTTTTT	G	0	PASS	DP=43;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,5:16,4:4,1
+chr1	175085874	.	C	CAA	0	PASS	DP=81;GPV=1;SPV=0.013604;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:33,20:26,17:7,3
+chr1	175122455	.	TTGCTAACAAAGGACTGAAGAAGAGCCAGTGAGTTAGGAAAATCAAGGGAGTA	T	0	PASS	DP=75;GPV=1;SPV=0.022351;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:39,16:19,10:20,6
+chr1	179410300	.	G	A	0	PASS	DP=129;GPV=1;SPV=5.0817e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:52,24:30,16:22,8
+chr1	181727163	.	G	A	0	PASS	DP=131;GPV=1;SPV=2.1332e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:56,36:31,18:25,18
+chr1	182141378	.	CTTTCTTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:7,2:7,2
+chr1	183364655	.	A	ATTTCTTTCTTTCTTTCTTTC	0	PASS	DP=85;GPV=1;SPV=0.0089603;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:36,15:17,2:19,13
+chr1	183441072	.	G	A	0	PASS	DP=126;GPV=1;SPV=0.0010762;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:64,13:37,5:27,8
+chr1	184811511	.	T	TGTTTTTTTTTG	0	PASS	DP=75;GPV=1;SPV=0.054778;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:45,9:14,7:31,2
+chr1	185858586	.	ATTTTTTTTTT	A	0	PASS	DP=45;GPV=1;SPV=0.2649;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,4:14,2:14,2
+chr1	186163946	.	A	T	0	PASS	DP=137;GPV=1;SPV=0.01109;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:79,10:37,7:42,3
+chr1	189139638	.	C	A	0	PASS	DP=151;GPV=1;SPV=0.0037905;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:69,8:43,3:26,5
+chr1	190277113	.	A	ATATATATATATATATATT	0	PASS	DP=19;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,5:1,1:3,4
+chr1	190280208	.	A	C	0	PASS	DP=115;GPV=1;SPV=0.00043432;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:55,14:31,6:24,8
+chr1	190408019	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,10:6,9:3,1
+chr1	191089426	.	TATATATTTGTGTGTATACATGTGTATGTATACGCAC	T	0	PASS	DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:16,2:19,2
+chr1	191581492	.	G	GTTTT	0	PASS	DP=41;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,9:7,7:8,2
+chr1	191806131	.	GAAT	G	0	PASS	DP=97;GPV=1;SPV=0.12939;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:29,4:11,3:18,1
+chr1	192048740	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.01311;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,8:26,6:3,2
+chr1	192550559	.	G	A	0	PASS	DP=134;GPV=1;SPV=9.5454e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:68,20:30,4:38,16
+chr1	192606029	.	A	AAGAG	0	PASS	DP=64;GPV=1;SPV=0.14384;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:29,2:7,2
+chr1	193177358	.	C	CAAAA	0	PASS	DP=66;GPV=1;SPV=0.01273;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,16:24,15:3,1
+chr1	193564348	.	TTATA	T	0	PASS	DP=139;GPV=1;SPV=0.024837;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:71,13:36,8:35,5
+chr1	193988983	.	A	T	0	PASS	DP=127;GPV=1;SPV=0.0017076;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:69,14:39,6:30,8
+chr1	194673631	.	G	GTTTT	0	PASS	DP=54;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,11:11,8:7,3
+chr1	194834203	.	T	A	0	PASS	DP=125;GPV=1;SPV=0.01342;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:25,8:11,3:14,5
+chr1	195543282	.	GGTGT	G	0	PASS	DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:26,4:7,1
+chr1	196235161	.	T	C	0	PASS	DP=110;GPV=1;SPV=0.0015681;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:62,19:29,8:33,11
+chr1	198404753	.	A	C	0	PASS	DP=129;GPV=1;SPV=3.3498e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:60,30:30,14:30,16
+chr1	198977744	.	T	A	0	PASS	DP=70;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:25,4:12,2:13,2
+chr1	199200439	.	C	CT	0	PASS	DP=65;GPV=1;SPV=0.00036531;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:23,20:14,11:9,9
+chr1	200073268	.	T	TTATA	0	PASS	DP=36;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,9:5,5:5,4
+chr1	200736164	.	CTTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.26519;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,3:11,1:5,2
+chr1	200919962	.	C	CT	0	PASS	DP=118;GPV=1;SPV=0.15872;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:33,5:13,2:20,3
+chr1	201765404	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.023939;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:5,5:28,2
+chr1	201901513	.	T	A	0	PASS	DP=31;GPV=1;SPV=0.0011846;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:5,17:1,12:4,5
+chr1	202065074	.	C	CA	0	PASS	DP=55;GPV=1;SPV=0.043306;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:24,13:13,11:11,2
+chr1	202721205	.	C	CTTT	0	PASS	DP=48;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:12,10:6,9:6,1
+chr1	203315362	.	G	T	0	PASS	DP=99;GPV=1;SPV=1.021e-10;SS=2;SSC=99;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:25,32:23,23:2,9
+chr1	203315363	.	G	T	0	PASS	DP=101;GPV=1;SPV=2.3122e-10;SS=2;SSC=96;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:27,32:23,23:4,9
+chr1	203918573	.	A	T	0	PASS	DP=92;GPV=1;SPV=0.023333;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:23,6:9,1:14,5
+chr1	204099424	.	C	CT	0	PASS	DP=44;GPV=1;SPV=0.011427;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,9:13,8:4,1
+chr1	205314328	.	T	G	0	PASS	DP=151;GPV=1;SPV=4.0037e-17;SS=2;SSC=163;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:36,56:17,18:19,38
+chr1	205898579	.	T	TTGTGTGTGTG	0	PASS	DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,2:6,3
+chr1	205956552	.	C	A	0	PASS	DP=151;GPV=1;SPV=0.0001101;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:78,19:38,10:40,9
+chr1	206118843	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.066379;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,8:9,4:9,4
+chr1	206322898	.	T	C	0	PASS	DP=44;GPV=1;SPV=0.053126;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:6,2:17,5
+chr1	206345228	.	G	T	0	PASS	DP=42;GPV=1;SPV=0.0072004;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:4,4:9,5
+chr1	207118198	.	A	G	0	PASS	DP=104;GPV=1;SPV=0.018568;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:57,14:27,3:30,11
+chr1	211214809	.	T	A	0	PASS	DP=79;GPV=1;SPV=0.050308;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:20,4:23,2
+chr1	211440639	.	CA	C	0	PASS	DP=79;GPV=1;SPV=0.00017113;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:30,27:15,17:15,10
+chr1	211535137	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0024246;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:26,16:10,3:16,13
+chr1	212116319	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.0043177;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,10:11,8:10,2
+chr1	212806847	.	C	T	0	PASS	DP=73;GPV=1;SPV=0.018872;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:14,9:22,4
+chr1	212865485	.	A	ATTTTTTTTTT	0	PASS	DP=52;GPV=1;SPV=0.011608;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,8:15,7:2,1
+chr1	212896856	.	A	T	0	PASS	DP=44;GPV=1;SPV=0.018479;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:6,17:4,9:2,8
+chr1	213355745	.	C	T	0	PASS	DP=120;GPV=1;SPV=0.0061895;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:64,10:44,7:20,3
+chr1	213714274	.	T	A	0	PASS	DP=125;GPV=1;SPV=0.012157;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:61,7:35,3:26,4
+chr1	213728937	.	G	GTT	0	PASS	DP=36;GPV=1;SPV=0.012914;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,11:9,7:2,4
+chr1	215732544	.	CTTTTT	C	0	PASS	DP=31;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,12:4,8:3,4
+chr1	216880304	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.019316;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:12,9:6,1
+chr1	216912226	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,2:7,2:0,0
+chr1	217958962	.	C	T	0	PASS	DP=148;GPV=1;SPV=7.2352e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:81,27:41,12:40,15
+chr1	218230928	.	CTTTT	C	0	PASS	DP=37;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,7:9,5:2,2
+chr1	218991845	.	G	A	0	PASS	DP=140;GPV=1;SPV=1.7265e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:65,29:24,12:41,17
+chr1	219165731	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.0038232;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:15,14:8,5:7,9
+chr1	219927678	.	CAAAA	C	0	PASS	DP=29;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,8:6,3:3,5
+chr1	221297986	.	C	CTTTT	0	PASS	DP=39;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,9:5,6:4,3
+chr1	221524306	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.088235;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,4:4,3:2,1
+chr1	223065455	.	CTTT	C	0	PASS	DP=35;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:8,3:11,4
+chr1	223268044	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:6,3:10,3
+chr1	223656676	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.016951;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,7:14,5:5,2
+chr1	224011834	.	GGACAT	G	0	PASS	DP=58;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,4:16,2:7,2
+chr1	224342475	.	ATCTC	A	0	PASS	DP=65;GPV=1;SPV=0.018933;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,11:9,7:10,4
+chr1	226844839	.	TAAAA	T	0	PASS	DP=33;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,3:5,3
+chr1	228817691	.	A	T	0	PASS	DP=111;GPV=1;SPV=0.00021864;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:29,9:19,4
+chr1	229069432	.	T	TA	0	PASS	DP=95;GPV=1;SPV=0.017657;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:12,2:20,9
+chr1	229116825	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,5:3,3:9,2
+chr1	229550525	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.0052123;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:15,9:3,3
+chr1	229870926	.	A	ACACAC	0	PASS	DP=24;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,2:4,1:1,1
+chr1	231169368	.	C	CT	0	PASS	DP=32;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,5:8,4:5,1
+chr1	232368199	.	CAA	C	0	PASS	DP=44;GPV=1;SPV=0.15645;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:11,2:15,3
+chr1	233120164	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.030612;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,7:20,6:4,1
+chr1	233729406	.	TGGC	T	0	PASS	DP=49;GPV=1;SPV=0.01817;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:9,2:13,5
+chr1	234108657	.	TTA	T	0	PASS	DP=63;GPV=1;SPV=0.069262;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:22,3:15,4
+chr1	235080879	.	G	GA	0	PASS	DP=48;GPV=1;SPV=0.0047012;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,11:9,9:3,2
+chr1	235926950	.	CAA	C	0	PASS	DP=44;GPV=1;SPV=0.032608;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,10:14,9:3,1
+chr1	237594886	.	GTTTTTTTTTTTTTTTTTTTTT	G	0	PASS	DP=38;GPV=1;SPV=0.024462;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:5,2:5,2
+chr1	237827936	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:11,5:9,1
+chr1	237884033	.	A	C	0	PASS	DP=56;GPV=1;SPV=0.0024202;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:15,15:6,6:9,9
+chr1	240248861	.	T	A	0	PASS	DP=100;GPV=1;SPV=0.00027224;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:47,16:29,3:18,13
+chr1	240277525	.	CTT	C	0	PASS	DP=29;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:5,4:3,1
+chr1	240364499	.	C	T	0	PASS	DP=99;GPV=1;SPV=0.00013601;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:26,8:14,5
+chr1	241571864	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.028117;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:7,8:12,2
+chr1	242512288	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.0010162;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:17,3:13,5
+chr1	243079412	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.00081679;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:24,6:16,4
+chr1	245006970	.	A	C	0	PASS	DP=82;GPV=1;SPV=0.034441;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:21,4:9,1:12,3
+chr1	245781338	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.00022306;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:25,4:11,7
+chr1	246267930	.	G	A	0	PASS	DP=111;GPV=1;SPV=3.0204e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:50,20:33,9:17,11
+chr1	246273153	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:6,3:12,1
+chr1	246408663	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:4,4:2,2
+chr1	247852884	.	GACACACACAC	G	0	PASS	DP=67;GPV=1;SPV=0.018096;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:34,8:20,4:14,4
+chr1	247958619	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.00015449;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:17,9:26,4
+chr1	248475596	.	TTAAA	T	0	PASS	DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:0,0:14,4
+chr1	248938433	.	T	C	0	PASS	DP=127;GPV=1;SPV=0.022333;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:53,7:21,3:32,4
+chr1	248945547	.	GGAGGGT	G	0	PASS	DP=140;GPV=1;SPV=0.028385;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:65,10:25,3:40,7
+chr1	248945740	.	TA	T	0	PASS	DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:6,1:1,3
+chr10	51939	.	T	A	0	PASS	DP=103;GPV=1;SPV=0.0093264;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:51,8:24,6:27,2
+chr10	260402	.	C	CAA	0	PASS	DP=28;GPV=1;SPV=0.013043;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:6,3:2,3
+chr10	685159	.	AAAATATATATATATATATATATATATACATAT	A	0	PASS	DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:4,1:10,6
+chr10	794158	.	C	G	0	PASS	DP=64;GPV=1;SPV=0.022194;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:15,8:6,2
+chr10	1542823	.	G	T	0	PASS	DP=38;GPV=1;SPV=0.031109;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:12,3:1,4
+chr10	2205050	.	CA	C	0	PASS	DP=93;GPV=1;SPV=3.8981e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:37,16:15,9:22,7
+chr10	2583951	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.02706;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:18,2:14,3
+chr10	4117550	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:8,3:1,2
+chr10	4169431	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,10:15,8:4,2
+chr10	4929666	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.008578;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:21,7:21,3
+chr10	5370687	.	A	ATG	0	PASS	DP=37;GPV=1;SPV=0.0046642;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,8:6,5:0,3
+chr10	8613475	.	CTT	C	0	PASS	DP=37;GPV=1;SPV=0.025795;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,8:7,6:6,2
+chr10	9058088	.	C	CTTTT	0	PASS	DP=39;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,5:6,4:3,1
+chr10	9133448	.	T	TTGTGTGTGTGTGTGTGTGTGTGTG	0	PASS	DP=74;GPV=1;SPV=0.048301;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:15,8:15,3
+chr10	9321021	.	C	CTT	0	PASS	DP=55;GPV=1;SPV=0.1519;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:11,2:21,3
+chr10	9776111	.	C	CAA	0	PASS	DP=45;GPV=1;SPV=0.040415;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,8:16,7:4,1
+chr10	10127847	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:20,4:14,2:6,2
+chr10	10383234	.	A	G	0	PASS	DP=91;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:23,5:11,3:12,2
+chr10	10621243	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.0087248;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,10:8,8:5,2
+chr10	10652124	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.004796;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:8,3:13,10
+chr10	11197070	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,2:5,1:0,1
+chr10	11645046	.	C	CA	0	PASS	DP=60;GPV=1;SPV=0.010514;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,11:16,9:6,2
+chr10	11662229	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,2:12,2
+chr10	12131682	.	CT	C	0	PASS	DP=28;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,6:5,1:6,5
+chr10	12256163	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:13,8:3,1
+chr10	12330744	.	CTTTTTTTTTTTTTT	C	0	PASS	DP=39;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,5:8,3:1,2
+chr10	12385739	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:7,13:5,9:2,4
+chr10	14191806	.	TC	T	0	PASS	DP=84;GPV=1;SPV=0.024274;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:17,3:19,2
+chr10	14374865	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.022357;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:15,2:3,6
+chr10	14628112	.	G	GTTTTTTTTT	0	PASS	DP=35;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,4:6,1:8,3
+chr10	15379603	.	G	GTT	0	PASS	DP=37;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,5:5,4:4,1
+chr10	15390270	.	A	AT	0	PASS	DP=62;GPV=1;SPV=0.02262;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,8:13,6:14,2
+chr10	15930344	.	G	A	0	PASS	DP=122;GPV=1;SPV=0.0023029;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:51,8:27,2:24,6
+chr10	17520917	.	GA	G	0	PASS	DP=34;GPV=1;SPV=0.11029;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,2:4,2:0,0
+chr10	18426955	.	A	ATTTTTTTT	0	PASS	DP=42;GPV=1;SPV=0.0070913;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,10:2,4:4,6
+chr10	18563165	.	AATGGAATGGAATGGAGAATGGT	A	0	PASS	DP=68;GPV=1;SPV=0.027747;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:13,3:19,7
+chr10	19023687	.	T	C	0	PASS	DP=80;GPV=1;SPV=0.0047508;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:24,6:13,3
+chr10	19885779	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.032911;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:27,4:17,1
+chr10	20682249	.	T	TA	0	PASS	DP=50;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,9:8,8:5,1
+chr10	21664944	.	C	CTT	0	PASS	DP=34;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,9:5,6:5,3
+chr10	22298888	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.0029478;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:16,6:16,2
+chr10	23051201	.	T	C	0	PASS	DP=87;GPV=1;SPV=0.032391;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:16,5:20,4
+chr10	25200869	.	T	G	0	PASS	DP=50;GPV=1;SPV=0.14184;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,6:11,3:9,3
+chr10	25211071	.	G	A	0	PASS	DP=102;GPV=1;SPV=0.00067164;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:21,7:23,4
+chr10	25713463	.	T	G	0	PASS	DP=84;GPV=1;SPV=0.014855;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:18,10:9,8:9,2
+chr10	25753378	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:10,4:3,2
+chr10	25908233	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:21,4:10,1:11,3
+chr10	27404164	.	A	C	0	PASS	DP=90;GPV=1;SPV=0.005129;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:20,4:17,3
+chr10	27446902	.	CTTTTCT	C	0	PASS	DP=53;GPV=1;SPV=0.0084291;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,6:5,1:4,5
+chr10	27656879	.	T	A	0	PASS	DP=54;GPV=1;SPV=0.0048547;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:7,10:2,2:5,8
+chr10	27948779	.	A	ATT	0	PASS	DP=42;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,4:14,3:5,1
+chr10	28465570	.	C	CA	0	PASS	DP=64;GPV=1;SPV=0.010573;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,10:10,7:10,3
+chr10	28521937	.	G	A	0	PASS	DP=113;GPV=1;SPV=0.00011299;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:25,6:19,6
+chr10	29481168	.	T	G	0	PASS	DP=76;GPV=1;SPV=0.11468;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:13,3:32,2
+chr10	29507556	.	CAT	C	0	PASS	DP=59;GPV=1;SPV=0.033939;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:15,2:11,3
+chr10	30073685	.	C	G	0	PASS	DP=62;GPV=1;SPV=0.036876;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,11:10,4:16,7
+chr10	31312481	.	G	C	0	PASS	DP=104;GPV=1;SPV=0.0064153;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:49,8:23,4:26,4
+chr10	31889619	.	GT	G	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:12,2:3,2
+chr10	31920449	.	C	CAAA	0	PASS	DP=44;GPV=1;SPV=0.20433;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,6:17,5:6,1
+chr10	31922180	.	CAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=29;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,9:3,6:4,3
+chr10	33897211	.	G	T	0	PASS	DP=96;GPV=1;SPV=0.079813;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:32,5:19,3:13,2
+chr10	34371514	.	AAAAAAAAAAAAAAAAAAAC	A	0	PASS	DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:7,4:5,1
+chr10	35262257	.	C	CAAA	0	PASS	DP=45;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,7:3,6:5,1
+chr10	36383345	.	A	G	0	PASS	DP=103;GPV=1;SPV=0.00022873;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:44,13:29,6:15,7
+chr10	38071302	.	C	CAAA	0	PASS	DP=45;GPV=1;SPV=0.016961;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,9:9,7:7,2
+chr10	38215937	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,6:12,5:1,1
+chr10	38600954	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:2,1:4,6
+chr10	38651226	.	A	C	0	PASS	DP=94;GPV=1;SPV=0.026174;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:27,6:18,3
+chr10	38953450	.	T	C	0	PASS	DP=414;GPV=1;SPV=0.023922;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:238:210,28:107,18:103,10
+chr10	39720018	.	T	G	0	PASS	DP=80;GPV=1;SPV=0.0032962;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:28,6:5,2
+chr10	39986132	.	T	A	0	PASS	DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:33,4:0,0
+chr10	39998840	.	G	A	0	PASS	DP=513;GPV=1;SPV=0.001616;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:277:243,34:143,25:100,9
+chr10	40278008	.	T	TA	0	PASS	DP=415;GPV=1;SPV=0.0062425;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:236:195,39:157,31:38,8
+chr10	40421309	.	C	T	0	PASS	DP=126;GPV=1;SPV=0.03755;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:66,9:33,5:33,4
+chr10	40477143	.	A	T	0	PASS	DP=178;GPV=1;SPV=0.00059398;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:67,29:50,22:17,7
+chr10	40701121	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.32006;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:24,3:17,1:7,2
+chr10	40792873	.	A	G	0	PASS	DP=198;GPV=1;SPV=0.014753;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:87,21:42,4:45,17
+chr10	41066625	.	T	A	0	PASS	DP=50;GPV=1;SPV=0.076205;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:8,1:15,3
+chr10	41072437	.	G	A	0	PASS	DP=180;GPV=1;SPV=0.041395;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:93,20:53,10:40,10
+chr10	41413507	.	C	G	0	PASS	DP=113;GPV=1;SPV=0.020165;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:59,7:19,1:40,6
+chr10	41550741	.	A	G	0	PASS	DP=201;GPV=1;SPV=0.0090706;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:96,18:34,8:62,10
+chr10	41559853	.	T	A	0	PASS	DP=222;GPV=1;SPV=0.034486;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:136:110,26:87,10:23,16
+chr10	41584224	.	A	T	0	PASS	DP=330;GPV=1;SPV=0.041571;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:192:169,23:112,19:57,4
+chr10	41587208	.	G	T	0	PASS	DP=154;GPV=1;SPV=0.041845;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:79,11:13,6:66,5
+chr10	41592961	.	A	T	0	PASS	DP=46;GPV=1;SPV=0.012992;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:0,9:17,1
+chr10	41874905	.	G	GGAATGGAATGCAACA	0	PASS	DP=96;GPV=1;SPV=0.0073197;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:33,10:22,3:11,7
+chr10	41882526	.	C	T	0	PASS	DP=484;GPV=1;SPV=0.0071833;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:254:215,39:112,24:103,15
+chr10	41899853	.	C	CGAATGGAATG	0	PASS	DP=161;GPV=1;SPV=0.024355;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:37,11:18,4:19,7
+chr10	41912099	.	T	A	0	PASS	DP=410;GPV=1;SPV=0.02222;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:235:205,30:108,20:97,10
+chr10	42073671	.	T	A	0	PASS	DP=3712;GPV=1;SPV=0.016542;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:2025:1788,237:832,129:956,108
+chr10	42079479	.	C	T	0	PASS	DP=4454;GPV=1;SPV=0.022841;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:2370:2099,271:1599,238:500,33
+chr10	42085585	.	G	C	0	PASS	DP=192;GPV=1;SPV=0.038256;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:90,11:18,3:72,8
+chr10	42085807	.	G	A	0	PASS	DP=473;GPV=1;SPV=0.0037187;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:278:249,29:133,13:116,16
+chr10	42130126	.	T	C	0	PASS	DP=692;GPV=1;SPV=0.024327;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:380:325,55:159,30:166,25
+chr10	42130137	.	G	C	0	PASS	DP=728;GPV=1;SPV=0.034664;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:398:345,53:170,16:175,37
+chr10	42766332	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.20063;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:26,4:8,1
+chr10	42831180	.	G	A	0	PASS	DP=107;GPV=1;SPV=0.0058807;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:31,5:19,3
+chr10	42891280	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.00010642;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:15,5:12,7
+chr10	44382770	.	A	C	0	PASS	DP=112;GPV=1;SPV=4.5383e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:46,21:21,15:25,6
+chr10	45741650	.	C	T	0	PASS	DP=115;GPV=1;SPV=0.014179;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:57,7:29,6:28,1
+chr10	45836673	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:12,7:4,4
+chr10	46323835	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.0080848;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:44,8:24,6:20,2
+chr10	46484868	.	A	T	0	PASS	DP=107;GPV=1;SPV=0.014737;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:51,10:29,8:22,2
+chr10	46525521	.	CAT	C	0	PASS	DP=164;GPV=1;SPV=0.016073;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:69,18:31,8:38,10
+chr10	47520838	.	TA	T	0	PASS	DP=68;GPV=1;SPV=0.021295;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,10:13,6:11,4
+chr10	48051799	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.017584;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:11,10:16,2
+chr10	48140522	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:17,3:17,1
+chr10	50028240	.	GTTTT	G	0	PASS	DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:13,3:2,1
+chr10	50748900	.	T	G	0	PASS	DP=84;GPV=1;SPV=0.038215;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:41,9:18,4:23,5
+chr10	51091344	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.00062159;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:20,5:23,11
+chr10	51285968	.	T	A	0	PASS	DP=77;GPV=1;SPV=0.04872;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:20,4:18,1
+chr10	52036899	.	G	C	0	PASS	DP=103;GPV=1;SPV=0.041079;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:50,11:34,6:16,5
+chr10	52380498	.	T	C	0	PASS	DP=91;GPV=1;SPV=0.0010177;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,10:27,5:11,5
+chr10	53164463	.	G	A	0	PASS	DP=99;GPV=1;SPV=2.6315e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:39,16:20,8:19,8
+chr10	53729877	.	T	G	0	PASS	DP=71;GPV=1;SPV=0.013778;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:13,7:19,4
+chr10	55582628	.	A	T	0	PASS	DP=36;GPV=1;SPV=0.02037;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,5:5,2:4,3
+chr10	56175687	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,3:5,2:1,1
+chr10	56684222	.	G	A	0	PASS	DP=80;GPV=1;SPV=3.8184e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:14,7:13,6
+chr10	57620739	.	C	CATATATATATATATAT	0	PASS	DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:7,3:6,2
+chr10	57811028	.	T	C	0	PASS	DP=109;GPV=1;SPV=1.2729e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:38,18:19,5:19,13
+chr10	61120281	.	G	GTTT	0	PASS	DP=28;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:6,2:7,2
+chr10	61680578	.	T	TATA	0	PASS	DP=39;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:6,7:6,2
+chr10	62977815	.	T	A	0	PASS	DP=33;GPV=1;SPV=0.018244;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:6,5:0,1
+chr10	64460856	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:6,7:2,1
+chr10	65470642	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.0026067;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:22,6:14,5
+chr10	66380758	.	G	C	0	PASS	DP=84;GPV=1;SPV=0.0019257;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:22,4:13,5
+chr10	66421834	.	CAAAA	C	0	PASS	DP=41;GPV=1;SPV=0.046847;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:9,4:2,2
+chr10	66976334	.	T	C	0	PASS	DP=98;GPV=1;SPV=3.5233e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:13,6:17,8
+chr10	68821532	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:13,2:27,3
+chr10	70045898	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.016941;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:14,1:23,8
+chr10	70311222	.	A	AT	0	PASS	DP=58;GPV=1;SPV=0.02977;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:14,8:10,5
+chr10	71590884	.	AAAC	A	0	PASS	DP=58;GPV=1;SPV=0.035289;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,6:8,4:11,2
+chr10	72319091	.	C	CT	0	PASS	DP=59;GPV=1;SPV=0.043948;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,5:14,3:13,2
+chr10	73724908	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:8,3:4,1
+chr10	74018177	.	G	GATATATATATAT	0	PASS	DP=18;GPV=1;SPV=0.014286;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,4:0,4:0,0
+chr10	74602105	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:13,7:1,1
+chr10	75109823	.	G	T	0	PASS	DP=102;GPV=1;SPV=0.0075351;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:49,8:30,5:19,3
+chr10	78459622	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0017333;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:26,8:11,1
+chr10	80032868	.	T	TAAA	0	PASS	DP=71;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:5,4:2,2:3,2
+chr10	80383621	.	G	GTATACGTATATATATATATATA	0	PASS	DP=59;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,4:13,3:15,1
+chr10	84047174	.	C	A	0	PASS	DP=90;GPV=1;SPV=0.0039955;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:26,5:22,8
+chr10	84437150	.	C	G	0	PASS	DP=77;GPV=1;SPV=0.03989;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:4,6:1,5:3,1
+chr10	84922885	.	T	TGTAAGAGGTTG	0	PASS	DP=81;GPV=1;SPV=0.025097;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:16,3:23,3
+chr10	86600343	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.0036889;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:17,3:20,5
+chr10	86625377	.	CTT	C	0	PASS	DP=36;GPV=1;SPV=0.011299;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:9,7:2,2
+chr10	87219963	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,2:7,2
+chr10	87351605	.	A	G	0	PASS	DP=101;GPV=1;SPV=0.018263;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:19,5:23,5
+chr10	87985763	.	CAAAAAAAAAAAAAAA	C	0	PASS	DP=26;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,3:4,3
+chr10	88613770	.	G	GTATA	0	PASS	DP=31;GPV=1;SPV=0.0024902;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,8:1,6:2,2
+chr10	90289883	.	T	TACACACACAC	0	PASS	DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:24,2:8,2
+chr10	92582076	.	G	T	0	PASS	DP=88;GPV=1;SPV=0.048675;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:28,1:16,4
+chr10	93644896	.	ATATAG	A	0	PASS	DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:11,1:16,3
+chr10	93693480	.	GTGTATA	G	0	PASS	DP=54;GPV=1;SPV=0.020192;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:12,3:7,7
+chr10	93693509	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,10:8,2:9,8
+chr10	93693514	.	TATATATATATATACACC	T	0	PASS	DP=49;GPV=1;SPV=0.035132;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:8,1:12,7
+chr10	96025192	.	AAT	A	0	PASS	DP=38;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:10,2:9,2
+chr10	96794402	.	T	A	0	PASS	DP=67;GPV=1;SPV=0.017686;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:15,2:17,5
+chr10	97166543	.	GA	G	0	PASS	DP=53;GPV=1;SPV=0.016354;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:13,2:6,3
+chr10	97449861	.	C	CTT	0	PASS	DP=30;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,3:6,1
+chr10	99321534	.	A	C	0	PASS	DP=82;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:47,7:26,4:21,3
+chr10	99321537	.	AAGAACC	A	0	PASS	DP=82;GPV=1;SPV=0.073758;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:48,6:26,5:22,1
+chr10	99922502	.	GTT	G	0	PASS	DP=31;GPV=1;SPV=0.19804;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:9,4:9,1
+chr10	99929440	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.00011756;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:16,6:14,4
+chr10	102663393	.	A	AAAT	0	PASS	DP=77;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:30,4:21,3:9,1
+chr10	103728043	.	C	A	0	PASS	DP=117;GPV=1;SPV=4.2495e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:50,16:28,8:22,8
+chr10	103776395	.	C	CA	0	PASS	DP=60;GPV=1;SPV=0.022854;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:8,5:8,3
+chr10	104293563	.	A	AT	0	PASS	DP=71;GPV=1;SPV=0.0061419;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,6:18,4:7,2
+chr10	104306020	.	G	GGTGT	0	PASS	DP=70;GPV=1;SPV=0.00048357;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:14,15:11,12:3,3
+chr10	104534704	.	TTCTTTC	T	0	PASS	DP=49;GPV=1;SPV=0.020689;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,5:2,3:13,2
+chr10	105512880	.	C	T	0	PASS	DP=76;GPV=1;SPV=1.407e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:14,11:10,3
+chr10	106125874	.	A	AAG	0	PASS	DP=85;GPV=1;SPV=0.012602;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,10:13,6:17,4
+chr10	108123939	.	G	A	0	PASS	DP=92;GPV=1;SPV=6.9523e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:39,17:18,5:21,12
+chr10	109500156	.	GTGTGGGCTGAATTCTGAGCACTACACATCA	G	0	PASS	DP=78;GPV=1;SPV=0.03317;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:38,16:22,9:16,7
+chr10	111375645	.	T	A	0	PASS	DP=70;GPV=1;SPV=0.020244;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,7:5,3:10,4
+chr10	113073503	.	CA	C	0	PASS	DP=53;GPV=1;SPV=0.043711;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:16,5:7,3
+chr10	113156115	.	C	CT	0	PASS	DP=57;GPV=1;SPV=0.00077751;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,10:7,9:6,1
+chr10	113348938	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.00080682;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:13,5:24,6
+chr10	114083902	.	AATATTATATATAAAT	A	0	PASS	DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:1,3:7,3
+chr10	118600042	.	G	A	0	PASS	DP=119;GPV=1;SPV=0.00026184;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:53,13:26,8:27,5
+chr10	119636647	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.020593;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:25,4:25,4
+chr10	119717299	.	A	AT	0	PASS	DP=90;GPV=1;SPV=0.00018434;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:23,6:10,5
+chr10	121080935	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.00036241;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:45,12:18,6:27,6
+chr10	121421866	.	G	A	0	PASS	DP=106;GPV=1;SPV=2.2741e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,14:22,4:17,10
+chr10	121455813	.	C	CTT	0	PASS	DP=22;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,5:1,3:3,2
+chr10	121650820	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:19,3:8,5
+chr10	123068657	.	CACAT	C	0	PASS	DP=87;GPV=1;SPV=0.0091599;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:21,5:18,2
+chr10	123211730	.	G	GTT	0	PASS	DP=50;GPV=1;SPV=0.013574;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,9:13,6:5,3
+chr10	125826996	.	T	TAAAAAAAAAAAA	0	PASS	DP=67;GPV=1;SPV=0.0082486;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,10:10,6:8,4
+chr10	125864929	.	CAAAAAAAAAAAAAAA	C	0	PASS	DP=18;GPV=1;SPV=0.0045249;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,5:1,1
+chr10	125894099	.	AAT	A	0	PASS	DP=226;GPV=1;SPV=0.028118;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:116:100,16:33,4:67,12
+chr10	127755343	.	C	G	0	PASS	DP=101;GPV=1;SPV=7.5652e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,15:16,8:19,7
+chr10	130347228	.	G	GT	0	PASS	DP=42;GPV=1;SPV=0.0092633;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,9:7,3:3,6
+chr10	131350780	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.0010195;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:21,4:14,6
+chr10	131746881	.	G	C	0	PASS	DP=72;GPV=1;SPV=0.0052114;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:18,6:6,2:12,4
+chr10	132816830	.	G	A	0	PASS	DP=102;GPV=1;SPV=2.593e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:34,21:19,9:15,12
+chr10	133011316	.	T	TTA	0	PASS	DP=45;GPV=1;SPV=0.023176;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:8,2:3,3
+chr10	133430349	.	A	G	0	PASS	DP=100;GPV=1;SPV=0.015108;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:45,6:24,3:21,3
+chr10	133625834	.	C	T	0	PASS	DP=117;GPV=1;SPV=0.0086278;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:23,3:21,11
+chr10	133657822	.	A	T	0	PASS	DP=389;GPV=1;SPV=0.02169;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:211:175,36:91,22:84,14
+chr11	123174	.	AAAAC	A	0	PASS	DP=142;GPV=1;SPV=0.035374;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:68,10:39,6:29,4
+chr11	349700	.	C	CAT	0	PASS	DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:10,1:8,3
+chr11	897146	.	C	CA	0	PASS	DP=50;GPV=1;SPV=0.020382;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:20,5:3,2
+chr11	1096112	.	C	G	0	PASS	DP=85;GPV=1;SPV=0.01598;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:21,5:11,2
+chr11	2917012	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.029749;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:20,8:13,3
+chr11	3754941	.	C	CA	0	PASS	DP=44;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,6:11,3:10,3
+chr11	4046059	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.30935;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,5:10,3:6,2
+chr11	4174497	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.00096207;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,17:7,8:12,9
+chr11	4233598	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:6,1:9,3
+chr11	4244066	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.040748;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:11,5:15,2
+chr11	4297902	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.031471;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:16,1:15,3
+chr11	4308516	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.065183;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:17,1:21,6
+chr11	4353566	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.036854;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:14,3:8,4
+chr11	4819566	.	ATTTT	A	0	PASS	DP=33;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,4:6,1
+chr11	5692793	.	C	CAAAAA	0	PASS	DP=58;GPV=1;SPV=0.026055;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,8:10,7:9,1
+chr11	8854016	.	AT	A	0	PASS	DP=33;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:9,1:5,3
+chr11	9719093	.	C	CAAAAA	0	PASS	DP=70;GPV=1;SPV=0.0079779;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,12:17,9:7,3
+chr11	10108515	.	CTT	C	0	PASS	DP=41;GPV=1;SPV=0.19203;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,4:14,3:9,1
+chr11	12155973	.	G	A	0	PASS	DP=112;GPV=1;SPV=2.1165e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:42,19:16,11:26,8
+chr11	12306140	.	G	A	0	PASS	DP=100;GPV=1;SPV=0.00010265;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,13:18,6:21,7
+chr11	12330900	.	A	AGAGT	0	PASS	DP=53;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,4:18,3:8,1
+chr11	12837681	.	T	TTTCTCCTTTCTCCC	0	PASS	DP=62;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:12,2:16,6
+chr11	15283720	.	C	CT	0	PASS	DP=66;GPV=1;SPV=0.0012048;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:15,8:11,2
+chr11	18274075	.	G	A	0	PASS	DP=94;GPV=1;SPV=3.3037e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:34,19:22,10:12,9
+chr11	18598411	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:10,3:5,1
+chr11	22334110	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.015385;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:13,10:7,7:6,3
+chr11	22339167	.	TATATATATATG	T	0	PASS	DP=43;GPV=1;SPV=0.13357;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:8,2:14,2
+chr11	23228372	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.039737;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:8,5:6,2:2,3
+chr11	25219930	.	CAAAAAAAAAAAAAA	C	0	PASS	DP=29;GPV=1;SPV=0.015942;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:6,4:2,1
+chr11	25650319	.	C	G	0	PASS	DP=95;GPV=1;SPV=0.012311;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:21,8:16,2
+chr11	25650327	.	GTATA	G	0	PASS	DP=89;GPV=1;SPV=0.013578;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,9:17,7:15,2
+chr11	25849885	.	T	TA	0	PASS	DP=91;GPV=1;SPV=0.00014302;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,14:23,5:14,9
+chr11	25857940	.	C	CTTATTATTATTATTATTA	0	PASS	DP=61;GPV=1;SPV=0.0093999;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:14,4:15,5
+chr11	29143731	.	G	C	0	PASS	DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:4,9:4,1
+chr11	29504566	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,7:1,2:2,5
+chr11	30888060	.	AAG	A	0	PASS	DP=55;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:17,5:12,4:5,1
+chr11	30888104	.	AAG	A	0	PASS	DP=63;GPV=1;SPV=0.023578;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,9:14,7:10,2
+chr11	32855211	.	C	T	0	PASS	DP=101;GPV=1;SPV=5e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:17,11:25,5
+chr11	33310270	.	G	GTCTATCTTATCTATCTA	0	PASS	DP=75;GPV=1;SPV=0.071484;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:18,3:17,1
+chr11	34237276	.	C	CT	0	PASS	DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:20,4:1,0
+chr11	35887994	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.022257;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:19,5:20,2
+chr11	36793927	.	TATATATATA	T	0	PASS	DP=46;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:4,5:2,2:2,3
+chr11	37315818	.	T	C	0	PASS	DP=94;GPV=1;SPV=2.1193e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:33,19:15,10:18,9
+chr11	38943261	.	T	G	0	PASS	DP=109;GPV=1;SPV=4.7395e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:24,10:17,3
+chr11	39326384	.	T	A	0	PASS	DP=104;GPV=1;SPV=2.3519e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:36,17:17,10:19,7
+chr11	40906706	.	C	CTG	0	PASS	DP=76;GPV=1;SPV=0.027169;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:17,3:16,2
+chr11	41303775	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:3,1:9,4
+chr11	43888382	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:3,2:2,4
+chr11	45337328	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.045915;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:12,9:9,1
+chr11	47545867	.	CTGCGTG	C	0	PASS	DP=55;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,4:8,1:11,3
+chr11	47862750	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.011497;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,7:17,3:25,4
+chr11	52225432	.	C	G	0	PASS	DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:1,0:21,4
+chr11	52599572	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.1041;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:25,4:7,1
+chr11	52599777	.	G	T	0	PASS	DP=82;GPV=1;SPV=0.092724;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:50,6:6,4:44,2
+chr11	52737767	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:21,4:0,0
+chr11	53072080	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:3,3:16,2
+chr11	53300818	.	C	A	0	PASS	DP=220;GPV=1;SPV=0.01649;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:128:115,13:43,4:72,9
+chr11	53535337	.	T	A	0	PASS	DP=209;GPV=1;SPV=0.01123;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:98,22:45,10:53,12
+chr11	53616452	.	G	T	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr11	54256182	.	G	A	0	PASS	DP=246;GPV=1;SPV=0.0093624;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:94,23:37,10:57,13
+chr11	54351934	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:10,3:1,1
+chr11	54353579	.	C	A	0	PASS	DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:4,1:8,3
+chr11	54362637	.	A	T	0	PASS	DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:0,1:10,3
+chr11	54382746	.	T	G	0	PASS	DP=75;GPV=1;SPV=0.060731;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:14,1:20,3
+chr11	54393362	.	C	T	0	PASS	DP=181;GPV=1;SPV=0.012341;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:89,19:1,1:88,18
+chr11	54421961	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.04394;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,4:4,1
+chr11	54530924	.	C	A	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr11	54536160	.	T	G	0	PASS	DP=175;GPV=1;SPV=0.029289;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:68,17:35,14:33,3
+chr11	55317589	.	C	A	0	PASS	DP=88;GPV=1;SPV=0.0058707;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:26,2:14,6
+chr11	55568525	.	G	T	0	PASS	DP=75;GPV=1;SPV=1.7247e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:14,8:10,6
+chr11	55608897	.	C	CTATATATA	0	PASS	DP=39;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,7:5,4:3,3
+chr11	55993111	.	A	T	0	PASS	DP=98;GPV=1;SPV=0.038888;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:22,8:15,2:7,6
+chr11	56498551	.	C	A	0	PASS	DP=88;GPV=1;SPV=0.0003709;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:30,9:14,5:16,4
+chr11	56974177	.	A	AATAT	0	PASS	DP=30;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:6,4:1,1
+chr11	58320076	.	GT	G	0	PASS	DP=47;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,8:10,4:5,4
+chr11	58697156	.	G	C	0	PASS	DP=117;GPV=1;SPV=0.048805;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:57,10:35,8:22,2
+chr11	59905247	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,10:3,9:2,1
+chr11	61376652	.	A	G	0	PASS	DP=89;GPV=1;SPV=0.00062737;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:17,6:18,4
+chr11	61657599	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.023031;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,8:8,4:6,4
+chr11	62098145	.	T	TACACAC	0	PASS	DP=70;GPV=1;SPV=0.016315;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,11:14,6:8,5
+chr11	62184483	.	A	G	0	PASS	DP=106;GPV=1;SPV=4.0571e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:44,16:19,7:25,9
+chr11	63145562	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.0035559;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:2,4:6,6
+chr11	63177835	.	ATGTG	A	0	PASS	DP=58;GPV=1;SPV=0.012629;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:13,4:8,4
+chr11	64170679	.	A	ATTTT	0	PASS	DP=32;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,7:3,3:6,4
+chr11	64582112	.	T	TCACCAC	0	PASS	DP=40;GPV=1;SPV=0.25362;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,3:7,1:10,2
+chr11	66270245	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:13,5:7,3:6,2
+chr11	67670248	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:17,3:6,1
+chr11	68511463	.	A	AGTGTGTGTGTGTGTGTGTGTGT	0	PASS	DP=55;GPV=1;SPV=0.010126;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,7:9,6:13,1
+chr11	69715028	.	AAGAGAGAGAG	A	0	PASS	DP=56;GPV=1;SPV=0.0092391;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,14:11,10:8,4
+chr11	70678532	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,5:4,4:2,1
+chr11	71931566	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.00024808;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:41,15:21,7:20,8
+chr11	72907599	.	G	GTT	0	PASS	DP=46;GPV=1;SPV=0.029887;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,12:10,8:9,4
+chr11	73735920	.	T	TAAA	0	PASS	DP=40;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:9,6:4,3
+chr11	73762590	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.0048917;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:15,4:11,2
+chr11	74353860	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.0028145;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:1,4:3,2
+chr11	76076802	.	G	GTATTTATTTATT	0	PASS	DP=73;GPV=1;SPV=0.032545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,10:10,5:20,5
+chr11	77920226	.	TACATAC	T	0	PASS	DP=89;GPV=1;SPV=0.0078411;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,8:18,7:22,1
+chr11	78535632	.	C	CT	0	PASS	DP=75;GPV=1;SPV=0.060679;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,4:23,3:10,1
+chr11	78942108	.	TA	T	0	PASS	DP=71;GPV=1;SPV=0.006277;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:14,5:15,2
+chr11	79124893	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.20154;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:26,9:17,4:9,5
+chr11	80326049	.	C	T	0	PASS	DP=91;GPV=1;SPV=0.0037001;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:18,7:21,1
+chr11	85598630	.	A	T	0	PASS	DP=99;GPV=1;SPV=0.00022326;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:40,12:30,3:10,9
+chr11	85753760	.	CT	C	0	PASS	DP=58;GPV=1;SPV=0.14912;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,4:23,3:9,1
+chr11	86939405	.	T	A	0	PASS	DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,2:6,2
+chr11	87189098	.	CG	C	0	PASS	DP=63;GPV=1;SPV=0.068696;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:9,2:20,2
+chr11	88080857	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.25926;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:15,4:15,4:0,0
+chr11	89060285	.	T	C	0	PASS	DP=89;GPV=1;SPV=0.076205;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:23,4:12,2:11,2
+chr11	89157084	.	T	TATAC	0	PASS	DP=26;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:7,3:3,1
+chr11	89422795	.	A	AT	0	PASS	DP=55;GPV=1;SPV=0.0023788;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:11,9:7,8:4,1
+chr11	89757187	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,8:7,7:2,1
+chr11	89861631	.	C	T	0	PASS	DP=119;GPV=1;SPV=0.018449;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:51,10:25,6:26,4
+chr11	90552211	.	GT	G	0	PASS	DP=51;GPV=1;SPV=0.0032719;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:9,9:6,4
+chr11	91670125	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:4,2:2,1:2,1
+chr11	92010898	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.0011397;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:11,2:28,8
+chr11	92293064	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.031089;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:15,4:9,1
+chr11	92712942	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.013703;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:22,1:19,6
+chr11	93591583	.	C	A	0	PASS	DP=27;GPV=1;SPV=0.015718;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,7:2,1:3,6
+chr11	95337512	.	C	A	0	PASS	DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:26,2:7,3
+chr11	96232615	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.00032416;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:12,8:28,5
+chr11	96932088	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,10:5,7:4,3
+chr11	97579453	.	ACACACACACACACC	A	0	PASS	DP=64;GPV=1;SPV=0.0073017;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:14,9:10,5
+chr11	97899853	.	GACATATTAAAATAAATTCTTCAGAGAGAACCA	G	0	PASS	DP=67;GPV=1;SPV=0.0048961;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:17,6:8,4
+chr11	98135976	.	C	T	0	PASS	DP=77;GPV=1;SPV=0.059972;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,6:17,2:18,4
+chr11	98316306	.	TA	T	0	PASS	DP=30;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:4,2:1,1:3,1
+chr11	98697052	.	G	T	0	PASS	DP=44;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:6,3:4,1:2,2
+chr11	98859045	.	C	CTATATATATA	0	PASS	DP=36;GPV=1;SPV=0.1226;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,6:7,5:4,1
+chr11	99727378	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.013425;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,15:13,11:16,4
+chr11	101046292	.	ATTTTTTTTTTTTTTT	A	0	PASS	DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,2:6,2
+chr11	101622377	.	G	GAAAGAAA	0	PASS	DP=51;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:13,4:6,3:7,1
+chr11	101629982	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.033473;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:10,2:11,4
+chr11	102149977	.	CTT	C	0	PASS	DP=27;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:5,2:3,2
+chr11	103125366	.	C	CT	0	PASS	DP=45;GPV=1;SPV=0.0001763;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,14:7,12:3,2
+chr11	103487799	.	A	C	0	PASS	DP=49;GPV=1;SPV=0.032072;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,9:5,5:11,4
+chr11	103526491	.	ATTTTTTTTTTTTTTTTTT	A	0	PASS	DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:4,6:7,1
+chr11	105365792	.	C	T	0	PASS	DP=100;GPV=1;SPV=8.9306e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:22,6:17,7
+chr11	106000360	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.010101;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:13:1,4:0,2:1,2
+chr11	106855905	.	A	C	0	PASS	DP=61;GPV=1;SPV=0.0014228;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:16,18:7,12:9,6
+chr11	107512304	.	T	G	0	PASS	DP=118;GPV=1;SPV=0.046944;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:52,13:23,10:29,3
+chr11	107540628	.	A	C	0	PASS	DP=96;GPV=1;SPV=0.038009;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:59,9:33,5:26,4
+chr11	108856170	.	G	A	0	PASS	DP=100;GPV=1;SPV=1.5282e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:19,10:16,4
+chr11	111276453	.	A	AAATATAT	0	PASS	DP=54;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:8,9:7,7:1,2
+chr11	112102806	.	T	C	0	PASS	DP=91;GPV=1;SPV=5.656e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:32,17:10,8:22,9
+chr11	112255078	.	TG	T	0	PASS	DP=43;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:4,4:3,2:1,2
+chr11	112677726	.	C	CTTT	0	PASS	DP=45;GPV=1;SPV=0.035511;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,9:14,8:4,1
+chr11	113210775	.	A	AACAC	0	PASS	DP=62;GPV=1;SPV=0.016244;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,10:14,7:3,3
+chr11	116818311	.	AT	A	0	PASS	DP=72;GPV=1;SPV=0.057736;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,6:20,1:16,5
+chr11	118504565	.	A	G	0	PASS	DP=110;GPV=1;SPV=3.0753e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:42,19:21,13:21,6
+chr11	118609315	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.027862;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:9,1:11,4
+chr11	118802450	.	T	TATATATATATATA	0	PASS	DP=44;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:10,6:6,4:4,2
+chr11	118831563	.	A	ATTTATTTTTATT	0	PASS	DP=73;GPV=1;SPV=0.021689;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,11:8,3:21,8
+chr11	119818978	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.022061;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:21,8:8,5:13,3
+chr11	121120793	.	G	A	0	PASS	DP=108;GPV=1;SPV=5.6929e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:39,12:25,9:14,3
+chr11	121147059	.	A	G	0	PASS	DP=71;GPV=1;SPV=6.7558e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:10,7:8,5
+chr11	121765653	.	TTCTC	T	0	PASS	DP=41;GPV=1;SPV=0.010021;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,5:3,1:8,4
+chr11	121765659	.	C	G	0	PASS	DP=25;GPV=1;SPV=0.024224;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:2,1:6,4
+chr11	122558020	.	CAAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:8,5:10,2
+chr11	123368271	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.098694;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:11,2:20,3
+chr11	123403451	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.029506;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:22,5:13,4
+chr11	123614151	.	G	T	0	PASS	DP=99;GPV=1;SPV=6.0843e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:13,7:20,4
+chr11	123709175	.	CT	C	0	PASS	DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:15,2:20,2
+chr11	123750349	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.00017791;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:42,14:19,4:23,10
+chr11	124337155	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.007251;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:5,6:7,3
+chr11	125623068	.	CAA	C	0	PASS	DP=43;GPV=1;SPV=0.0050719;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:13,7:3,1
+chr11	126417787	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.047777;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:16,2:26,4
+chr11	126923098	.	TCTTCTC	T	0	PASS	DP=54;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,4:3,2:23,2
+chr11	126956487	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.0012263;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:19,5:15,4
+chr11	127617757	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,5:9,4:9,1
+chr11	127992652	.	CTT	C	0	PASS	DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:11,1:6,3
+chr11	128985860	.	A	G	0	PASS	DP=63;GPV=1;SPV=0.06037;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:14,2:14,2
+chr11	129043381	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr11	130091047	.	A	C	0	PASS	DP=127;GPV=1;SPV=0.0011005;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:45,20:20,10:25,10
+chr11	131680469	.	C	CTG	0	PASS	DP=53;GPV=1;SPV=0.0083484;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:10,5:7,7
+chr11	132069996	.	A	T	0	PASS	DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:12,2:14,4
+chr11	132217352	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.094058;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:18,2:18,2
+chr11	132599386	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.049096;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,4:9,1:9,3
+chr11	134896512	.	C	T	0	PASS	DP=103;GPV=1;SPV=0.00036516;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:23,6:21,6
+chr12	43841	.	T	C	0	PASS	DP=192;GPV=1;SPV=0.016532;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:91,11:66,9:25,2
+chr12	422048	.	AC	A	0	PASS	DP=47;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:15,1:7,2
+chr12	1501253	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:16,1:11,3
+chr12	1604830	.	A	AGT	0	PASS	DP=21;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,2:3,2
+chr12	1933007	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.026239;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:41,10:24,8:17,2
+chr12	3072183	.	C	CTT	0	PASS	DP=34;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,8:2,2:7,6
+chr12	5133551	.	A	G	0	PASS	DP=91;GPV=1;SPV=0.0003312;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:20,8:19,5
+chr12	5658624	.	A	G	0	PASS	DP=106;GPV=1;SPV=0.031023;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:47,16:25,13:22,3
+chr12	5932324	.	A	G	0	PASS	DP=80;GPV=1;SPV=0.025884;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:38,15:19,9:19,6
+chr12	5998499	.	ATAT	A	0	PASS	DP=27;GPV=1;SPV=0.060606;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:2,6:2,4:0,2
+chr12	6400481	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.0078411;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:18,4:22,4
+chr12	7197123	.	A	AT	0	PASS	DP=48;GPV=1;SPV=0.071698;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,5:10,3:13,2
+chr12	7197197	.	T	A	0	PASS	DP=82;GPV=1;SPV=0.0031015;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:32,15:16,6:16,9
+chr12	7197198	.	A	AT	0	PASS	DP=86;GPV=1;SPV=0.036143;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,10:17,4:21,6
+chr12	7300180	.	AG	A	0	PASS	DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:14,3:7,1
+chr12	7421606	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.020229;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,7:4,3:2,4
+chr12	7874783	.	A	ACG	0	PASS	DP=57;GPV=1;SPV=0.057887;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,5:12,2:15,3
+chr12	8983395	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.025395;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,7:7,2:6,5
+chr12	9284446	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.045574;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,9:14,4:11,5
+chr12	9440307	.	A	G	0	PASS	DP=120;GPV=1;SPV=0.021699;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:61,10:20,1:41,9
+chr12	9445081	.	A	G	0	PASS	DP=105;GPV=1;SPV=0.029989;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:61,8:34,4:27,4
+chr12	9775802	.	C	CT	0	PASS	DP=51;GPV=1;SPV=0.0040214;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:12,12:6,2
+chr12	10229652	.	CTTT	C	0	PASS	DP=33;GPV=1;SPV=0.047343;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:6,4:0,0
+chr12	10860794	.	GGGAAA	G	0	PASS	DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:3,4:1,1
+chr12	11301199	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:18,1:14,3
+chr12	12433348	.	A	AAT	0	PASS	DP=44;GPV=1;SPV=0.015123;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,12:8,9:4,3
+chr12	14586637	.	CAT	C	0	PASS	DP=69;GPV=1;SPV=0.095143;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:19,2:16,2
+chr12	14684586	.	TTCCTTCC	T	0	PASS	DP=20;GPV=1;SPV=0.0011312;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:2,7:0,3:2,4
+chr12	16157109	.	CTT	C	0	PASS	DP=47;GPV=1;SPV=0.021442;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:12,3:8,3
+chr12	16523882	.	G	A	0	PASS	DP=109;GPV=1;SPV=0.00035725;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:47,12:22,7:25,5
+chr12	17001438	.	G	A	0	PASS	DP=91;GPV=1;SPV=1.2854e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:12,3:21,13
+chr12	17429190	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.0037716;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:21,5:23,4
+chr12	17437782	.	A	C	0	PASS	DP=90;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:10,4:4,3:6,1
+chr12	17535764	.	G	A	0	PASS	DP=78;GPV=1;SPV=0.0075589;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:17,3:19,5
+chr12	18650700	.	GTGTGTATATATCTATATATATATATATATATATATATATATATATA	G	0	PASS	DP=26;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,9:4,6:2,3
+chr12	20195673	.	A	T	0	PASS	DP=100;GPV=1;SPV=0.00062967;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:49,15:25,6:24,9
+chr12	20386122	.	AAT	A	0	PASS	DP=50;GPV=1;SPV=0.020906;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:13,2:10,6
+chr12	21579349	.	CTT	C	0	PASS	DP=48;GPV=1;SPV=0.018977;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,12:7,9:6,3
+chr12	22651683	.	T	C	0	PASS	DP=70;GPV=1;SPV=0.12521;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:26,8:17,6:9,2
+chr12	22655358	.	C	T	0	PASS	DP=76;GPV=1;SPV=0.0019815;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,17:13,10:12,7
+chr12	23184603	.	A	AT	0	PASS	DP=32;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,4:6,3:3,1
+chr12	24965737	.	T	C	0	PASS	DP=87;GPV=1;SPV=0.00021938;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,12:17,9:17,3
+chr12	26182586	.	T	TC	0	PASS	DP=30;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,4:3,1:7,3
+chr12	29076043	.	GAA	G	0	PASS	DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:8,4:3,1
+chr12	29588287	.	C	T	0	PASS	DP=104;GPV=1;SPV=0.0013642;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:26,2:20,8
+chr12	30698745	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:2,3:0,1:2,2
+chr12	31256208	.	CTTTCTTTCTTTCTT	C	0	PASS	DP=39;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:4,2:0,0:4,2
+chr12	31600148	.	TAA	T	0	PASS	DP=45;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,6:5,3:6,3
+chr12	32118087	.	A	AT	0	PASS	DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:16,2:18,2
+chr12	34396603	.	G	T	0	PASS	DP=113;GPV=1;SPV=0.00018046;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:24,4:22,8
+chr12	34809155	.	C	T	0	PASS	DP=131;GPV=1;SPV=0.048332;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:58,15:26,7:32,8
+chr12	34897693	.	C	A	0	PASS	DP=412;GPV=1;SPV=0.044198;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:247:213,34:190,29:23,5
+chr12	34900136	.	G	C	0	PASS	DP=100;GPV=1;SPV=0.028877;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:52,16:16,9:36,7
+chr12	34907389	.	C	G	0	PASS	DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:10,1:5,3
+chr12	35119500	.	G	C	0	PASS	DP=133;GPV=1;SPV=0.047506;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:63,18:38,14:25,4
+chr12	35131522	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.3107;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:0,0:27,4
+chr12	35346166	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr12	35410170	.	C	A	0	PASS	DP=130;GPV=1;SPV=0.019872;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:64,17:19,5:45,12
+chr12	35536409	.	T	G	0	PASS	DP=80;GPV=1;SPV=0.029251;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:14,4:18,5
+chr12	35732599	.	C	A	0	PASS	DP=35;GPV=1;SPV=0.33518;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:23,4:0,0
+chr12	36077545	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.0048798;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:1,1:20,10
+chr12	36081326	.	G	A	0	PASS	DP=494;GPV=1;SPV=0.037777;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:289:249,40:112,13:137,27
+chr12	36345295	.	G	A	0	PASS	DP=307;GPV=1;SPV=0.026669;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:161:141,20:48,9:93,11
+chr12	36354434	.	A	T	0	PASS	DP=220;GPV=1;SPV=0.021426;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:111,23:56,15:55,8
+chr12	36440145	.	G	C	0	PASS	DP=284;GPV=1;SPV=0.028831;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:160:141,19:72,10:69,9
+chr12	36512617	.	G	A	0	PASS	DP=118;GPV=1;SPV=0.018096;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:61,11:57,3:4,8
+chr12	36687647	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:14,1:18,3
+chr12	36941561	.	T	A	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr12	37065138	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr12	37109804	.	AC	A	0	PASS	DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:24,1:9,3
+chr12	37109806	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.10242;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:25,1:9,3
+chr12	37235869	.	C	T	0	PASS	DP=166;GPV=1;SPV=0.024763;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:76,12:21,3:55,9
+chr12	37239433	.	A	T	0	PASS	DP=89;GPV=1;SPV=0.040852;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:20,4:13,3
+chr12	37239914	.	T	G	0	PASS	DP=94;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:25,3:16,2
+chr12	37570739	.	T	G	0	PASS	DP=90;GPV=1;SPV=0.0060738;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:19,4:19,3
+chr12	39534883	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.022431;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,8:16,5:6,3
+chr12	39653558	.	T	TTC	0	PASS	DP=50;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,5:11,3:7,2
+chr12	41270326	.	CTGTG	C	0	PASS	DP=89;GPV=1;SPV=0.071318;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:20,4:11,2:9,2
+chr12	41713007	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:8,3:5,1
+chr12	41744307	.	T	TTTTTC	0	PASS	DP=58;GPV=1;SPV=0.027873;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,10:12,4:9,6
+chr12	41950085	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr12	42485239	.	GTTTTTT	G	0	PASS	DP=47;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,5:12,4:5,1
+chr12	45376368	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.024372;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:12,4:19,10
+chr12	46874014	.	TTC	T	0	PASS	DP=53;GPV=1;SPV=0.014083;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:8,5:11,3
+chr12	48055293	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.00012694;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:18,8:16,6
+chr12	48271915	.	C	CTTT	0	PASS	DP=78;GPV=1;SPV=0.046436;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,6:24,5:7,1
+chr12	48879131	.	G	A	0	PASS	DP=78;GPV=1;SPV=0.0070569;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:19,4:14,3
+chr12	49313495	.	CT	C	0	PASS	DP=39;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,13:8,9:4,4
+chr12	49385862	.	TG	T	0	PASS	DP=77;GPV=1;SPV=0.030617;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:21,5:20,2
+chr12	49548096	.	G	A	0	PASS	DP=102;GPV=1;SPV=0.029376;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:29,10:12,3:17,7
+chr12	51721081	.	T	TTATATA	0	PASS	DP=39;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,4:11,1:11,3
+chr12	52374729	.	A	G	0	PASS	DP=92;GPV=1;SPV=0.00024819;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:20,4:15,7
+chr12	52423554	.	G	A	0	PASS	DP=101;GPV=1;SPV=4.8427e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:43,17:23,9:20,8
+chr12	52943056	.	G	A	0	PASS	DP=99;GPV=1;SPV=2.468e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:18,7:18,7
+chr12	55098653	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.034248;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:13,3:10,2
+chr12	55928676	.	CAAA	C	0	PASS	DP=42;GPV=1;SPV=0.027524;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,7:6,1
+chr12	56690308	.	T	TAA	0	PASS	DP=38;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,6:7,5:6,1
+chr12	57970676	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:7,2:17,2
+chr12	60537210	.	A	G	0	PASS	DP=84;GPV=1;SPV=0.00030968;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:17,5:15,6
+chr12	61400232	.	ATTTAAGAATATTTAAATAAAGAATTAGTATATTC	A	0	PASS	DP=85;GPV=1;SPV=0.0062315;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:38,12:20,5:18,7
+chr12	61461169	.	GA	G	0	PASS	DP=99;GPV=1;SPV=0.0051771;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:22,3:23,5
+chr12	63011208	.	A	C	0	PASS	DP=110;GPV=1;SPV=0.00026049;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:50,14:32,8:18,6
+chr12	63839163	.	A	AAAAC	0	PASS	DP=64;GPV=1;SPV=0.032183;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:9,5:14,3
+chr12	66390272	.	G	A	0	PASS	DP=91;GPV=1;SPV=0.0024615;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:15,7:27,3
+chr12	67184674	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:9,4:5,4
+chr12	69200826	.	TGAGG	T	0	PASS	DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:16,3:3,1
+chr12	69299620	.	CT	C	0	PASS	DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:7,3:3,3
+chr12	69357532	.	C	CTT	0	PASS	DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,4:11,2:12,2
+chr12	69840286	.	C	T	0	PASS	DP=112;GPV=1;SPV=0.00010162;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:49,15:25,9:24,6
+chr12	69960686	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.0082862;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:11,6:7,6
+chr12	70596519	.	T	TA	0	PASS	DP=101;GPV=1;SPV=0.025619;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:50,6:26,1:24,5
+chr12	71901930	.	T	C	0	PASS	DP=93;GPV=1;SPV=0.00015233;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:23,10:17,5
+chr12	72551787	.	A	G	0	PASS	DP=101;GPV=1;SPV=8.2952e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:15,8:17,5
+chr12	75429935	.	T	TTTTC	0	PASS	DP=65;GPV=1;SPV=0.016397;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:11,4:11,5
+chr12	75669850	.	ATTTTTTTTTTT	A	0	PASS	DP=23;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,4:1,1:2,3
+chr12	76019229	.	C	CATATATATATAT	0	PASS	DP=36;GPV=1;SPV=0.0094835;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,9:7,6:6,3
+chr12	78274684	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,6:9,5:7,1
+chr12	79179243	.	G	GAT	0	PASS	DP=64;GPV=1;SPV=0.023972;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:10,1:10,8
+chr12	79632300	.	TATATATACATAC	T	0	PASS	DP=40;GPV=1;SPV=0.015215;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:11,7:2,1
+chr12	79632312	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,2:4,1:1,1
+chr12	80431621	.	C	CT	0	PASS	DP=43;GPV=1;SPV=0.0017568;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,13:11,9:1,4
+chr12	80552643	.	AATTATATAT	A	0	PASS	DP=22;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:3,1:1,3
+chr12	82227812	.	A	AATGTTTATT	0	PASS	DP=90;GPV=1;SPV=0.020631;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:46,7:19,5:27,2
+chr12	82227814	.	A	T	0	PASS	DP=90;GPV=1;SPV=0.023704;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:47,7:21,5:26,2
+chr12	82227815	.	A	T	0	PASS	DP=88;GPV=1;SPV=0.037567;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:46,6:20,4:26,2
+chr12	84155582	.	G	A	0	PASS	DP=111;GPV=1;SPV=0.00068089;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:53,13:24,9:29,4
+chr12	85993908	.	C	T	0	PASS	DP=116;GPV=1;SPV=0.016475;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:66,9:38,7:28,2
+chr12	86595999	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.00082226;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:18,8:22,5
+chr12	86612739	.	CA	C	0	PASS	DP=64;GPV=1;SPV=0.00042315;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,9:12,5:8,4
+chr12	87202646	.	A	T	0	PASS	DP=90;GPV=1;SPV=0.00049606;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:22,4:10,5
+chr12	87747203	.	C	A	0	PASS	DP=63;GPV=1;SPV=0.010857;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:11,2:13,11
+chr12	88522481	.	G	A	0	PASS	DP=92;GPV=1;SPV=3.2868e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:36,16:12,8:24,8
+chr12	90093214	.	C	A	0	PASS	DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:10,3:8,1
+chr12	90866407	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.24135;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:20,3:8,1
+chr12	93401164	.	A	G	0	PASS	DP=107;GPV=1;SPV=0.037663;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:52,8:16,1:36,7
+chr12	93614404	.	T	C	0	PASS	DP=41;GPV=1;SPV=0.012068;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:2,1:13,5
+chr12	96220382	.	A	AT	0	PASS	DP=60;GPV=1;SPV=0.0062647;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:28,12:20,9:8,3
+chr12	96291628	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,8:5,7:4,1
+chr12	96909176	.	C	CA	0	PASS	DP=57;GPV=1;SPV=0.0082862;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,12:12,9:6,3
+chr12	101437951	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.0048847;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:28,3:13,6
+chr12	101810432	.	T	TAC	0	PASS	DP=31;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:10,3:2,1
+chr12	102829664	.	A	T	0	PASS	DP=57;GPV=1;SPV=0.0032271;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:10,5:9,5
+chr12	102831578	.	T	A	0	PASS	DP=94;GPV=1;SPV=0.044568;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:28,1:23,5
+chr12	103039964	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.0098054;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,7:25,4:17,3
+chr12	103224524	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.030671;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:44,8:22,1:22,7
+chr12	103259056	.	T	G	0	PASS	DP=107;GPV=1;SPV=6.1657e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:49,19:18,10:31,9
+chr12	103831770	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.0047817;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:8,6:7,3
+chr12	104323684	.	A	C	0	PASS	DP=75;GPV=1;SPV=0.022711;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:19,3:10,7
+chr12	105036516	.	A	T	0	PASS	DP=20;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,2:4,1:1,1
+chr12	105598715	.	A	ATGTGTG	0	PASS	DP=56;GPV=1;SPV=0.02761;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,11:15,8:8,3
+chr12	106109555	.	GA	G	0	PASS	DP=42;GPV=1;SPV=0.021089;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,11:13,9:2,2
+chr12	106115736	.	G	A	0	PASS	DP=104;GPV=1;SPV=9.0588e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:20,7:21,6
+chr12	107069643	.	A	T	0	PASS	DP=78;GPV=1;SPV=0.0070569;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:22,3:11,4
+chr12	112655563	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:4,4:6,1
+chr12	113432209	.	CTTCTTTCTTTCTTTCT	C	0	PASS	DP=44;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,5:3,1:14,4
+chr12	113642131	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,10:3,1:6,9
+chr12	113941612	.	A	T	0	PASS	DP=104;GPV=1;SPV=0.031957;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:32,10:20,4:12,6
+chr12	114207721	.	A	ATT	0	PASS	DP=58;GPV=1;SPV=0.045384;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,10:15,6:11,4
+chr12	114912242	.	C	A	0	PASS	DP=116;GPV=1;SPV=0.0073381;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:49,12:28,4:21,8
+chr12	115083989	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.00025208;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:46,14:27,9:19,5
+chr12	115909594	.	A	G	0	PASS	DP=119;GPV=1;SPV=1.0227e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:41,22:22,10:19,12
+chr12	116385440	.	C	CTTT	0	PASS	DP=38;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,6:7,5:6,1
+chr12	117285531	.	GA	G	0	PASS	DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:26,3:7,1
+chr12	117321992	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:0,0:15,4
+chr12	118003891	.	C	CA	0	PASS	DP=67;GPV=1;SPV=0.019651;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,6:17,5:12,1
+chr12	118709094	.	T	TTC	0	PASS	DP=42;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,10:1,4:5,6
+chr12	118757668	.	T	G	0	PASS	DP=34;GPV=1;SPV=0.015632;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,7:5,2:6,5
+chr12	119075452	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:16,3:11,1
+chr12	119377254	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.0087645;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:13,10:3,1
+chr12	120441974	.	ATTAT	A	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:0,0:5,4
+chr12	122156931	.	G	A	0	PASS	DP=71;GPV=1;SPV=0.00047755;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:14,7:16,7
+chr12	122696119	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chr12	125390634	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.00089506;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:39,12:27,6:12,6
+chr12	126225669	.	CT	C	0	PASS	DP=69;GPV=1;SPV=0.0086452;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,9:11,4:15,5
+chr12	126697301	.	G	T	0	PASS	DP=96;GPV=1;SPV=0.0023465;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:28,5:14,4
+chr12	127103899	.	C	CA	0	PASS	DP=29;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,5:6,4:4,1
+chr12	127341272	.	C	CAAAAA	0	PASS	DP=42;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,5:10,4:6,1
+chr12	127480647	.	C	G	0	PASS	DP=22;GPV=1;SPV=0.055341;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,4:4,2
+chr12	127747591	.	T	TTTCC	0	PASS	DP=59;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,7:7,3:9,4
+chr12	128016648	.	A	C	0	PASS	DP=40;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:6,2:4,1:2,1
+chr12	128701903	.	T	C	0	PASS	DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:21,2:11,2
+chr12	129043525	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.0012547;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:19,4:17,5
+chr12	130533037	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:14,4:8,2
+chr12	131539486	.	ATGGTGATGG	A	0	PASS	DP=59;GPV=1;SPV=0.031797;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:13,6:12,2
+chr12	132165171	.	TATA	T	0	PASS	DP=33;GPV=1;SPV=0.0054438;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:4,2:7,6
+chr12	132463893	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,4:8,1:8,3
+chr12	132758936	.	T	A	0	PASS	DP=59;GPV=1;SPV=0.037005;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:11,4:7,4
+chr13	18318089	.	TTTTA	T	0	PASS	DP=252;GPV=1;SPV=0.049683;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:84,11:40,8:44,3
+chr13	21393699	.	CAA	C	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:10,4:1,0
+chr13	21853434	.	T	TA	0	PASS	DP=98;GPV=1;SPV=0.010252;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:44,10:26,2:18,8
+chr13	22379938	.	C	G	0	PASS	DP=108;GPV=1;SPV=5.5065e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:22,3:21,11
+chr13	22701443	.	GTTTTTTTTTTTTTTTTTTTTTTTTTTTT	G	0	PASS	DP=34;GPV=1;SPV=0.042547;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:8,3:5,2
+chr13	23059875	.	TTC	T	0	PASS	DP=57;GPV=1;SPV=0.010151;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:4,1:15,4
+chr13	23101730	.	T	C	0	PASS	DP=43;GPV=1;SPV=0.11553;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:19,2:4,3
+chr13	23318367	.	G	C	0	PASS	DP=92;GPV=1;SPV=0.00018163;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:19,6:21,9
+chr13	24406427	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:14,2:15,2
+chr13	24584653	.	T	A	0	PASS	DP=92;GPV=1;SPV=0.00014015;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:41,17:22,7:19,10
+chr13	24587447	.	T	C	0	PASS	DP=167;GPV=1;SPV=0.049596;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:85,19:24,10:61,9
+chr13	24764890	.	T	G	0	PASS	DP=75;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:40:1,6:1,4:0,2
+chr13	24961756	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.030258;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:11,9:15,1
+chr13	25399397	.	C	CTTTTTTT	0	PASS	DP=20;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,6:2,5:2,1
+chr13	25888068	.	A	ACCCC	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:1,0:10,4
+chr13	25953522	.	T	TA	0	PASS	DP=68;GPV=1;SPV=0.064424;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,5:21,4:13,1
+chr13	26982961	.	A	AAAG	0	PASS	DP=76;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,4:20,1:7,3
+chr13	27466530	.	T	C	0	PASS	DP=102;GPV=1;SPV=0.00043273;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:46,13:26,6:20,7
+chr13	28059974	.	A	C	0	PASS	DP=60;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:4,3:2,1:2,2
+chr13	28099048	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.00091067;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:24,5:16,5
+chr13	29566785	.	T	C	0	PASS	DP=117;GPV=1;SPV=0.00076988;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:26,7:20,2
+chr13	31999431	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:0,1:15,3
+chr13	33178023	.	G	GA	0	PASS	DP=24;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,6:2,5:3,1
+chr13	34013843	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.0084455;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:16,4:22,3
+chr13	34136234	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.0033188;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:44,10:15,5:29,5
+chr13	34362913	.	CAAAA	C	0	PASS	DP=29;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:3,5:6,1
+chr13	35809161	.	A	T	0	PASS	DP=99;GPV=1;SPV=0.0005101;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:45,13:22,6:23,7
+chr13	38207779	.	GAGAGA	G	0	PASS	DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:20,2:12,2
+chr13	38988367	.	T	TAA	0	PASS	DP=62;GPV=1;SPV=0.10735;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:27,3:14,2:13,1
+chr13	39566731	.	T	TAA	0	PASS	DP=36;GPV=1;SPV=0.07478;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:11,3:3,1
+chr13	42836567	.	ATATATATAT	A	0	PASS	DP=20;GPV=1;SPV=0.011905;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:0,6:0,1:0,5
+chr13	43100205	.	C	CTT	0	PASS	DP=30;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,5:9,2:2,3
+chr13	45019034	.	C	A	0	PASS	DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:8,2:16,2
+chr13	46625631	.	G	GT	0	PASS	DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:7,6:11,4
+chr13	47144838	.	G	A	0	PASS	DP=104;GPV=1;SPV=8.3622e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:44,15:19,8:25,7
+chr13	48174576	.	A	AT	0	PASS	DP=62;GPV=1;SPV=0.0081878;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,8:10,7:16,1
+chr13	49378723	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:12,3:9,1
+chr13	49775153	.	ACT	A	0	PASS	DP=60;GPV=1;SPV=0.017354;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:9,8:15,6
+chr13	51604796	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.00039728;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:23,9:16,6
+chr13	52078073	.	C	CA	0	PASS	DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:19,2:15,2
+chr13	54177183	.	T	A	0	PASS	DP=107;GPV=1;SPV=1.9766e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,14:14,9:25,5
+chr13	54874289	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.019164;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:55,8:31,4:24,4
+chr13	55556250	.	C	CTT	0	PASS	DP=53;GPV=1;SPV=0.026086;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:22,14:7,4:15,10
+chr13	55614797	.	A	C	0	PASS	DP=79;GPV=1;SPV=0.0254;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:24,3:17,4
+chr13	56654601	.	C	A	0	PASS	DP=93;GPV=1;SPV=5.6815e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:39,17:22,6:17,11
+chr13	56804533	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.0011362;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:26,8:14,2
+chr13	57884182	.	G	A	0	PASS	DP=100;GPV=1;SPV=0.0096294;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:46,7:25,2:21,5
+chr13	58781479	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.020516;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:24,11:18,2:6,9
+chr13	58866893	.	T	G	0	PASS	DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:11,1:17,3
+chr13	59749444	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.01483;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:23,3:6,3
+chr13	63260054	.	T	C	0	PASS	DP=62;GPV=1;SPV=0.010704;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:10,7:6,2:4,5
+chr13	63429909	.	T	A	0	PASS	DP=77;GPV=1;SPV=0.04872;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:25,2:13,3
+chr13	63864907	.	C	CTT	0	PASS	DP=52;GPV=1;SPV=0.1852;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,5:7,2:15,3
+chr13	64509325	.	C	A	0	PASS	DP=93;GPV=1;SPV=0.00023731;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:19,6:14,4
+chr13	67019188	.	C	CTT	0	PASS	DP=40;GPV=1;SPV=0.046683;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,5:9,3:7,2
+chr13	67174318	.	C	G	0	PASS	DP=73;GPV=1;SPV=0.041983;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:12,4:17,2
+chr13	68412521	.	A	G	0	PASS	DP=108;GPV=1;SPV=1.9489e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:44,17:27,9:17,8
+chr13	70292136	.	C	CAA	0	PASS	DP=51;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,9:8,8:6,1
+chr13	70382679	.	G	GATATATAT	0	PASS	DP=39;GPV=1;SPV=0.022595;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,6:4,2:5,4
+chr13	71118149	.	G	C	0	PASS	DP=31;GPV=1;SPV=0.052643;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:12,2:2,4
+chr13	71700588	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,3:1,1:3,2
+chr13	72949960	.	A	G	0	PASS	DP=101;GPV=1;SPV=0.00025924;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:45,14:28,9:17,5
+chr13	74429226	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:7,2:18,2
+chr13	75771542	.	T	TTTTAA	0	PASS	DP=79;GPV=1;SPV=0.05421;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:18,2:22,3
+chr13	75771545	.	T	A	0	PASS	DP=78;GPV=1;SPV=0.061918;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,5:13,2:23,3
+chr13	75940903	.	GT	G	0	PASS	DP=33;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,6:5,5:3,1
+chr13	76835153	.	T	C	0	PASS	DP=79;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:26,4:9,2:17,2
+chr13	76835645	.	G	GAA	0	PASS	DP=57;GPV=1;SPV=0.18687;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:31,3:3,1
+chr13	76964894	.	G	GTTT	0	PASS	DP=40;GPV=1;SPV=0.092279;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,5:13,4:7,1
+chr13	77748398	.	CT	C	0	PASS	DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:9,5:1,2
+chr13	78078379	.	T	TAC	0	PASS	DP=79;GPV=1;SPV=7.4607e-06;SS=2;SSC=51;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:11,8:14,7
+chr13	79116653	.	TAC	T	0	PASS	DP=87;GPV=1;SPV=0.049204;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:19,4:18,7
+chr13	80627712	.	TTCTCTCTC	T	0	PASS	DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:7,4:6,1
+chr13	80848572	.	A	ATTTCTTTCTTTCTTTCTTTC	0	PASS	DP=59;GPV=1;SPV=0.0094722;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,8:4,2:22,6
+chr13	81849772	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.0078067;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:16,10:9,7:7,3
+chr13	82981586	.	TAGATA	T	0	PASS	DP=62;GPV=1;SPV=0.019438;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:14,4:12,5
+chr13	83763729	.	G	T	0	PASS	DP=97;GPV=1;SPV=0.00099218;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:45,12:27,6:18,6
+chr13	84580274	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.00025429;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:15,5:22,7
+chr13	85395893	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:10,3:12,1
+chr13	87074528	.	T	G	0	PASS	DP=79;GPV=1;SPV=0.0064982;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:17,6:15,4
+chr13	89441315	.	T	TAGATAGATAGAC	0	PASS	DP=82;GPV=1;SPV=0.044315;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,7:14,2:15,5
+chr13	89463802	.	T	G	0	PASS	DP=63;GPV=1;SPV=0.034805;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:12,4:15,4
+chr13	91073961	.	C	CTG	0	PASS	DP=87;GPV=1;SPV=0.020856;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:21,9:15,5
+chr13	91093399	.	CT	C	0	PASS	DP=41;GPV=1;SPV=0.020447;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:10,8:5,4
+chr13	91432209	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:13,10:8,5:5,5
+chr13	93649934	.	G	A	0	PASS	DP=108;GPV=1;SPV=3.0999e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:41,19:17,9:24,10
+chr13	95126885	.	A	ATATATT	0	PASS	DP=79;GPV=1;SPV=0.013635;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,11:24,5:12,6
+chr13	96348818	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:14,5:25,6
+chr13	96589619	.	G	A	0	PASS	DP=88;GPV=1;SPV=0.00069515;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:42,15:25,9:17,6
+chr13	96754757	.	T	A	0	PASS	DP=87;GPV=1;SPV=0.017808;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:18,2:17,3
+chr13	96943450	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.0219;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:7,6:3,1
+chr13	97105084	.	TA	T	0	PASS	DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:8,3:1,2
+chr13	98391600	.	T	G	0	PASS	DP=91;GPV=1;SPV=0.0012787;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:17,4:22,6
+chr13	100232351	.	C	CGTGTGTGTGTGTGT	0	PASS	DP=63;GPV=1;SPV=0.12943;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,4:21,3:11,1
+chr13	100232357	.	T	C	0	PASS	DP=75;GPV=1;SPV=0.029506;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:16,5:19,4
+chr13	101332397	.	C	CAA	0	PASS	DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:11,5:1,3
+chr13	102974309	.	C	G	0	PASS	DP=88;GPV=1;SPV=0.021263;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,6:17,1:24,5
+chr13	103047630	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.003331;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:12,5:19,6
+chr13	105065149	.	A	G	0	PASS	DP=70;GPV=1;SPV=0.028679;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:14,4:13,5
+chr13	105467729	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.0027647;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:18,15:12,12:6,3
+chr13	106216651	.	G	C	0	PASS	DP=61;GPV=1;SPV=0.045253;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:19,7:4,1
+chr13	106867015	.	CAA	C	0	PASS	DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:10,2:11,2
+chr13	107565384	.	C	CAAA	0	PASS	DP=60;GPV=1;SPV=0.01458;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:12,10:5,7:7,3
+chr13	107668673	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.0059563;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:20,3:15,4
+chr13	108046191	.	C	T	0	PASS	DP=95;GPV=1;SPV=2.9162e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,13:17,9:16,4
+chr13	108543460	.	C	G	0	PASS	DP=86;GPV=1;SPV=0.0050209;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:22,5:13,2
+chr13	108761545	.	C	A	0	PASS	DP=99;GPV=1;SPV=1.7586e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,19:17,13:13,6
+chr13	109336084	.	G	C	0	PASS	DP=94;GPV=1;SPV=0.00019321;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:20,6:17,6
+chr13	110219664	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,5:11,1:9,4
+chr13	110506255	.	CCA	C	0	PASS	DP=73;GPV=1;SPV=0.056634;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:21,2:16,3
+chr13	111281181	.	CTT	C	0	PASS	DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:6,3:4,3
+chr13	111859149	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:16,4:6,1:10,3
+chr13	112383157	.	G	GA	0	PASS	DP=42;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:15,2:4,2
+chr13	112863429	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:7,2:12,2
+chr13	112961104	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.021818;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:34,12:11,6:23,6
+chr13	113055459	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:4,4:3,2
+chr14	18270100	.	A	G	0	PASS	DP=87;GPV=1;SPV=0.040969;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,8:16,2:19,6
+chr14	18379672	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.021229;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:22,8:0,1
+chr14	18520206	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr14	18938656	.	T	G	0	PASS	DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:0,0:19,4
+chr14	18952842	.	C	A	0	PASS	DP=94;GPV=1;SPV=0.047824;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:44,10:23,9:21,1
+chr14	18999953	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:10,2:7,2
+chr14	19013983	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:6,4:1,2
+chr14	19014505	.	G	C	0	PASS	DP=113;GPV=1;SPV=0.036063;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:51,7:37,5:14,2
+chr14	19014583	.	A	T	0	PASS	DP=101;GPV=1;SPV=0.04103;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:25,5:12,7
+chr14	19212342	.	G	C	0	PASS	DP=182;GPV=1;SPV=0.036428;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:77,19:33,13:44,6
+chr14	19237864	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:11,3:13,1
+chr14	19276115	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:15,4:0,0
+chr14	19289034	.	T	A	0	PASS	DP=135;GPV=1;SPV=0.012161;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:54,19:17,5:37,14
+chr14	19291750	.	C	T	0	PASS	DP=207;GPV=1;SPV=0.0064441;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:72,22:41,16:31,6
+chr14	19293378	.	A	G	0	PASS	DP=28;GPV=1;SPV=0.038406;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:7,3:1,3
+chr14	19318253	.	T	C	0	PASS	DP=99;GPV=1;SPV=0.030482;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:42,15:19,4:23,11
+chr14	19335869	.	T	TG	0	PASS	DP=63;GPV=1;SPV=0.023594;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:2,4:23,7
+chr14	19351441	.	C	T	0	PASS	DP=160;GPV=1;SPV=0.0042191;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:67,17:29,10:38,7
+chr14	19377333	.	T	TA	0	PASS	DP=237;GPV=1;SPV=0.01768;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:132:118,14:69,2:49,12
+chr14	19377338	.	C	T	0	PASS	DP=224;GPV=1;SPV=0.012506;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:126:111,15:63,2:48,13
+chr14	19449258	.	G	C	0	PASS	DP=52;GPV=1;SPV=0.064826;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:0,0:23,4
+chr14	19488364	.	G	A	0	PASS	DP=287;GPV=1;SPV=0.03486;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:141,25:74,16:67,9
+chr14	19506468	.	C	CTTT	0	PASS	DP=45;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,4:11,3:9,1
+chr14	19507331	.	C	A	0	PASS	DP=81;GPV=1;SPV=0.0067016;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:6,6:31,2
+chr14	19642736	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.04729;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:12,3:24,8
+chr14	19645109	.	TA	T	0	PASS	DP=52;GPV=1;SPV=0.24396;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:13,3:20,1
+chr14	19685723	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:25,4:0,0
+chr14	19686710	.	T	G	0	PASS	DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:16,2:2,2
+chr14	19891409	.	T	TTTC	0	PASS	DP=74;GPV=1;SPV=0.049892;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,5:27,3:9,2
+chr14	19900360	.	C	A	0	PASS	DP=171;GPV=1;SPV=1.3363e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:85,22:39,9:46,13
+chr14	20179034	.	CGT	C	0	PASS	DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:16,3:14,1
+chr14	23002451	.	C	CA	0	PASS	DP=58;GPV=1;SPV=0.016015;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,13:18,10:2,3
+chr14	23234622	.	T	C	0	PASS	DP=105;GPV=1;SPV=0.00010394;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:42,13:22,7:20,6
+chr14	25124162	.	C	CAA	0	PASS	DP=66;GPV=1;SPV=0.0096904;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,9:18,8:4,1
+chr14	25745394	.	A	AG	0	PASS	DP=88;GPV=1;SPV=0.0029353;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:39,9:17,3:22,6
+chr14	26345632	.	C	T	0	PASS	DP=100;GPV=1;SPV=0.00018429;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:15,6:20,4
+chr14	26732225	.	T	TTTC	0	PASS	DP=60;GPV=1;SPV=0.010741;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,7:4,2:13,5
+chr14	27841292	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:6,2:4,1:2,1
+chr14	27873697	.	G	GT	0	PASS	DP=37;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,7:9,6:5,1
+chr14	30724072	.	T	TA	0	PASS	DP=42;GPV=1;SPV=0.039561;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:13,3:8,7
+chr14	33517594	.	T	G	0	PASS	DP=97;GPV=1;SPV=0.0007833;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:23,4:21,8
+chr14	34159596	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.0036508;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:1,6:1,2:0,4
+chr14	34709787	.	C	CAAAA	0	PASS	DP=58;GPV=1;SPV=0.028662;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,10:15,8:4,2
+chr14	34735162	.	C	CACAG	0	PASS	DP=82;GPV=1;SPV=0.047026;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:19,1:16,3
+chr14	36468370	.	A	T	0	PASS	DP=91;GPV=1;SPV=0.0010064;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:21,6:19,5
+chr14	37186587	.	TA	T	0	PASS	DP=40;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,8:6,7:3,1
+chr14	37348983	.	CT	C	0	PASS	DP=42;GPV=1;SPV=0.013587;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,8:12,6:2,2
+chr14	37351986	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.0069797;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:12,16:2,4:10,12
+chr14	38100237	.	A	AT	0	PASS	DP=40;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,4:13,1:8,3
+chr14	38603160	.	A	AAGAGAG	0	PASS	DP=36;GPV=1;SPV=0.16749;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,3:11,2:3,1
+chr14	40192069	.	C	A	0	PASS	DP=88;GPV=1;SPV=0.00067686;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:41,14:21,4:20,10
+chr14	45045543	.	GTATATATATATATA	G	0	PASS	DP=50;GPV=1;SPV=0.027862;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,2:10,3
+chr14	45045559	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.027541;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:9,2:9,3
+chr14	45306696	.	C	G	0	PASS	DP=117;GPV=1;SPV=4.8407e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:48,20:28,14:20,6
+chr14	46149252	.	G	T	0	PASS	DP=97;GPV=1;SPV=0.023395;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:54,8:24,3:30,5
+chr14	50016709	.	CTTTT	C	0	PASS	DP=35;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:10,7:2,1
+chr14	52197581	.	A	C	0	PASS	DP=115;GPV=1;SPV=0.00026888;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:51,13:27,9:24,4
+chr14	52402875	.	T	A	0	PASS	DP=96;GPV=1;SPV=0.00054005;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:25,6:15,5
+chr14	52697647	.	T	C	0	PASS	DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:8,1:10,3
+chr14	54131908	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.0018745;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:16,6:14,2
+chr14	54267301	.	G	A	0	PASS	DP=99;GPV=1;SPV=0.0012111;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:47,12:20,9:27,3
+chr14	55445592	.	GAAAAA	G	0	PASS	DP=35;GPV=1;SPV=0.034759;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:11,3:1,1
+chr14	56596794	.	A	T	0	PASS	DP=66;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,4:17,3:18,1
+chr14	56669459	.	C	G	0	PASS	DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:14,1:11,3
+chr14	56875540	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.013266;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,5:10,4:6,1
+chr14	56922104	.	CACATAT	C	0	PASS	DP=67;GPV=1;SPV=0.046164;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:15,3:11,5
+chr14	57880034	.	GAGGAAGGAAGGAAGGA	G	0	PASS	DP=55;GPV=1;SPV=0.032;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,7:11,6:6,1
+chr14	60741658	.	G	GTTTT	0	PASS	DP=55;GPV=1;SPV=0.0089005;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,8:11,5:12,3
+chr14	60898142	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.044529;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:21,8:6,1:15,7
+chr14	61002392	.	A	G	0	PASS	DP=100;GPV=1;SPV=4.8132e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:38,19:14,9:24,10
+chr14	63003516	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.11664;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:7,1:18,4
+chr14	63126362	.	G	A	0	PASS	DP=75;GPV=1;SPV=6.4158e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:16,8:10,5
+chr14	63959287	.	CTTT	C	0	PASS	DP=35;GPV=1;SPV=0.24868;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,4:12,1
+chr14	64253610	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.005945;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:5,4:15,1
+chr14	64380668	.	CT	C	0	PASS	DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:5,6:3,3
+chr14	64869619	.	A	T	0	PASS	DP=67;GPV=1;SPV=0.024141;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:19,3:9,5
+chr14	66921444	.	G	GT	0	PASS	DP=71;GPV=1;SPV=0.00091899;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,11:16,8:12,3
+chr14	67466994	.	CA	C	0	PASS	DP=31;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,7:5,6:0,1
+chr14	67643852	.	TAA	T	0	PASS	DP=45;GPV=1;SPV=0.01393;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,7:8,4:6,3
+chr14	69397452	.	G	GAAA	0	PASS	DP=70;GPV=1;SPV=0.022951;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:18,7:7,5
+chr14	69842784	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.093588;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,4:18,3:8,1
+chr14	70654587	.	CAAAAAAAAAAAAAAAAA	C	0	PASS	DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:6,7:4,2
+chr14	73440263	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:12,1:16,3
+chr14	73689026	.	GTT	G	0	PASS	DP=59;GPV=1;SPV=0.026706;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,9:13,5:4,4
+chr14	73772839	.	TG	T	0	PASS	DP=56;GPV=1;SPV=0.034091;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,11:10,6:13,5
+chr14	74092315	.	GT	G	0	PASS	DP=70;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:18,4:11,2:7,2
+chr14	74320563	.	CTTTTTTTTTTTTTTTTTTTTTT	C	0	PASS	DP=26;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:6,3:7,2
+chr14	74340528	.	C	T	0	PASS	DP=106;GPV=1;SPV=0.00016256;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:19,6:18,4
+chr14	76503172	.	TC	T	0	PASS	DP=54;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:20,2:8,2
+chr14	77513016	.	C	CTTT	0	PASS	DP=32;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,4:3,2:12,2
+chr14	77905633	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.0001383;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:31,13:16,11:15,2
+chr14	79790615	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.14936;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:18,4:5,1
+chr14	80184516	.	TA	T	0	PASS	DP=66;GPV=1;SPV=0.0012479;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:29,13:19,5:10,8
+chr14	81303059	.	G	T	0	PASS	DP=85;GPV=1;SPV=0.033219;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,11:20,8:13,3
+chr14	81966199	.	CA	C	0	PASS	DP=61;GPV=1;SPV=0.0084152;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,9:19,7:9,2
+chr14	82862874	.	ATTTTTTT	A	0	PASS	DP=49;GPV=1;SPV=0.046549;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,6:12,4:3,2
+chr14	83590209	.	A	C	0	PASS	DP=64;GPV=1;SPV=0.030468;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:16,8:14,2
+chr14	85917277	.	T	C	0	PASS	DP=62;GPV=1;SPV=0.040784;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:13,3:16,6
+chr14	86279901	.	C	A	0	PASS	DP=96;GPV=1;SPV=1.2862e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:31,13:17,8:14,5
+chr14	86287051	.	AGGAAG	A	0	PASS	DP=33;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,7:6,5:8,2
+chr14	89613116	.	CAAAAA	C	0	PASS	DP=46;GPV=1;SPV=0.011012;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,7:6,5:2,2
+chr14	91108526	.	T	TGTGAGAGAGAGAGAGA	0	PASS	DP=21;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,5:1,2:3,3
+chr14	92448345	.	T	TACACACACACACACACACAC	0	PASS	DP=52;GPV=1;SPV=0.089356;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,7:12,6:6,1
+chr14	92911791	.	G	C	0	PASS	DP=122;GPV=1;SPV=0.02785;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:57,8:37,2:20,6
+chr14	94088499	.	C	CTT	0	PASS	DP=50;GPV=1;SPV=0.024419;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:9,7:8,3
+chr14	94815455	.	C	T	0	PASS	DP=104;GPV=1;SPV=1.056e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:43,20:29,8:14,12
+chr14	96340130	.	T	G	0	PASS	DP=43;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,4:5,3:10,1
+chr14	96340131	.	C	A	0	PASS	DP=39;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,4:4,3:9,1
+chr14	96621139	.	TC	T	0	PASS	DP=74;GPV=1;SPV=0.0057212;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:20,2:12,6
+chr14	97376058	.	G	T	0	PASS	DP=89;GPV=1;SPV=0.0021438;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:38,9:18,6:20,3
+chr14	98401101	.	G	GAGAAAGAA	0	PASS	DP=22;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,4:3,3:2,1
+chr14	99903784	.	C	CTT	0	PASS	DP=60;GPV=1;SPV=0.01976;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:15,10:9,3
+chr14	99959377	.	CCT	C	0	PASS	DP=71;GPV=1;SPV=0.01339;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,8:16,2:16,6
+chr14	99959385	.	C	CT	0	PASS	DP=85;GPV=1;SPV=0.023261;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,6:23,2:16,4
+chr14	101089548	.	C	A	0	PASS	DP=99;GPV=1;SPV=0.040631;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:32,6:21,1:11,5
+chr14	101607561	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:2,0:21,4
+chr14	103908165	.	C	CAA	0	PASS	DP=53;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:17,13:13,9:4,4
+chr14	104225631	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.047547;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,7:13,3:19,4
+chr14	105594814	.	T	C	0	PASS	DP=133;GPV=1;SPV=0.029663;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:59,17:43,13:16,4
+chr14	105665211	.	GTT	G	0	PASS	DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:6,6:0,1
+chr14	105759956	.	CT	C	0	PASS	DP=109;GPV=1;SPV=0.0052291;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:18,3:21,7
+chr15	17063205	.	A	T	0	PASS	DP=70;GPV=1;SPV=0.0068563;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:16,3:17,6
+chr15	19872473	.	C	CTT	0	PASS	DP=41;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,6:5,5:4,1
+chr15	20001506	.	TAGAG	T	0	PASS	DP=150;GPV=1;SPV=0.036939;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:71,12:52,7:19,5
+chr15	20053156	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:22,5:4,1
+chr15	20104346	.	A	C	0	PASS	DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:11,4:0,0
+chr15	20332701	.	TAC	T	0	PASS	DP=195;GPV=1;SPV=0.009197;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:58,17:26,15:32,2
+chr15	20332717	.	C	G	0	PASS	DP=194;GPV=1;SPV=0.032853;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:80,16:35,14:45,2
+chr15	20427539	.	T	G	0	PASS	DP=67;GPV=1;SPV=0.059617;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:13,4:21,1
+chr15	20457729	.	A	T	0	PASS	DP=96;GPV=1;SPV=0.048603;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:53,6:25,2:28,4
+chr15	20537493	.	C	A	0	PASS	DP=130;GPV=1;SPV=0.0067746;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:58,13:37,7:21,6
+chr15	20573432	.	G	GT	0	PASS	DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:0,0:36,4
+chr15	20640595	.	G	T	0	PASS	DP=106;GPV=1;SPV=0.023456;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:20,2:26,8
+chr15	20651177	.	G	T	0	PASS	DP=317;GPV=1;SPV=0.0032421;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:170:134,36:63,17:71,19
+chr15	20737194	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:3,6:6,2
+chr15	20957725	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:10,3:15,2
+chr15	21053699	.	G	A	0	PASS	DP=116;GPV=1;SPV=0.0058709;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:57,13:43,8:14,5
+chr15	21135521	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:0,0:5,4
+chr15	21253620	.	A	G	0	PASS	DP=192;GPV=1;SPV=0.033925;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:112,15:71,2:41,13
+chr15	21346492	.	C	CTCTT	0	PASS	DP=160;GPV=1;SPV=0.0065235;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:69,17:18,3:51,14
+chr15	21549180	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:8,2:8,2
+chr15	21554146	.	A	T	0	PASS	DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:6,1:11,4
+chr15	21554908	.	TGAAG	T	0	PASS	DP=50;GPV=1;SPV=0.076205;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:16,3:7,1
+chr15	22440026	.	C	G	0	PASS	DP=111;GPV=1;SPV=0.0068284;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:49,7:21,3:28,4
+chr15	23041097	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.20486;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:21,3:12,2:9,1
+chr15	23195795	.	A	T	0	PASS	DP=149;GPV=1;SPV=0.028972;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:66,16:46,6:20,10
+chr15	23363256	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.024221;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:17,5:11,1
+chr15	24262448	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.015035;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:9,5:4,2
+chr15	24353047	.	G	C	0	PASS	DP=89;GPV=1;SPV=0.014016;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:15,1:24,5
+chr15	24395903	.	C	CATATATATACAT	0	PASS	DP=32;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:7,3:3,1
+chr15	25170183	.	T	G	0	PASS	DP=103;GPV=1;SPV=0.00011182;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:13,6:30,8
+chr15	25786617	.	CTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,6:8,3:5,3
+chr15	25845332	.	G	T	0	PASS	DP=95;GPV=1;SPV=0.042088;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:20,3:19,5
+chr15	25854517	.	G	C	0	PASS	DP=98;GPV=1;SPV=0.00020622;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:23,9:18,4
+chr15	26142377	.	T	TTC	0	PASS	DP=55;GPV=1;SPV=0.049645;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,4:3,2:16,2
+chr15	27257538	.	T	A	0	PASS	DP=108;GPV=1;SPV=0.00038112;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:24,12:14,8:10,4
+chr15	28151020	.	T	C	0	PASS	DP=91;GPV=1;SPV=0.00012153;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:40,17:19,7:21,10
+chr15	28378480	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:5,1:2,1
+chr15	28453922	.	G	C	0	PASS	DP=118;GPV=1;SPV=0.0010594;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:43,19:23,7:20,12
+chr15	29534106	.	CAA	C	0	PASS	DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:7,3:2,3
+chr15	30344256	.	T	A	0	PASS	DP=102;GPV=1;SPV=0.027562;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:47,11:26,4:21,7
+chr15	31921025	.	C	T	0	PASS	DP=105;GPV=1;SPV=7.9372e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:20,5:21,8
+chr15	32234382	.	C	A	0	PASS	DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:22,4:0,0
+chr15	32306060	.	A	G	0	PASS	DP=68;GPV=1;SPV=0.033079;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:16,6:14,2
+chr15	32329566	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.0086319;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,14:17,3:8,11
+chr15	32813042	.	T	C	0	PASS	DP=111;GPV=1;SPV=0.0097526;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:59,9:29,3:30,6
+chr15	33419056	.	G	T	0	PASS	DP=79;GPV=1;SPV=0.033251;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:20,2:16,3
+chr15	34062554	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.0063215;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,7:10,1:5,6
+chr15	34310771	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:4,2:3,1:1,1
+chr15	35074963	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.00081325;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:22,6:17,4
+chr15	35733612	.	T	C	0	PASS	DP=110;GPV=1;SPV=7.5848e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:24,8:17,4
+chr15	35971475	.	A	G	0	PASS	DP=64;GPV=1;SPV=0.036822;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:8,4:24,2
+chr15	36991779	.	TTTTC	T	0	PASS	DP=46;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:10,3:6,4
+chr15	38681355	.	C	CTCT	0	PASS	DP=66;GPV=1;SPV=0.0065499;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,12:8,3:15,9
+chr15	38846873	.	A	AT	0	PASS	DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:11,3:4,1
+chr15	38903984	.	T	G	0	PASS	DP=41;GPV=1;SPV=0.029588;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,11:7,9:5,2
+chr15	38965037	.	G	T	0	PASS	DP=99;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:4,3:3,1:1,2
+chr15	38989442	.	CCTATGCTATGCTATGCTATGCTATGCTATGCTATGCTATG	C	0	PASS	DP=45;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:7,6:9,1
+chr15	43697631	.	C	T	0	PASS	DP=96;GPV=1;SPV=0.00089389;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:28,7:16,5
+chr15	43964997	.	A	G	0	PASS	DP=105;GPV=1;SPV=0.0017697;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:21,5:24,4
+chr15	44824992	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.0001703;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:38,12:24,5:14,7
+chr15	44875797	.	C	G	0	PASS	DP=108;GPV=1;SPV=1.4002e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:44,27:22,16:22,11
+chr15	45798088	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.0033421;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,14:9,10:6,4
+chr15	46169548	.	A	ATT	0	PASS	DP=58;GPV=1;SPV=0.036581;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,11:17,9:5,2
+chr15	46954340	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.0049996;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:27,4:18,5
+chr15	47384814	.	GTTTTTTTTTT	G	0	PASS	DP=28;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,3:4,1
+chr15	47657719	.	CTTTTTTTTTTTTTTT	C	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,3:6,1
+chr15	50393532	.	A	ATATATATGTG	0	PASS	DP=76;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:3,2:1,1:2,1
+chr15	50585050	.	A	ATT	0	PASS	DP=40;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,11:9,9:8,2
+chr15	50629859	.	C	CT	0	PASS	DP=45;GPV=1;SPV=0.0048312;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,9:5,5:5,4
+chr15	50644797	.	C	CA	0	PASS	DP=56;GPV=1;SPV=0.069354;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,5:16,4:8,1
+chr15	51194251	.	CTT	C	0	PASS	DP=61;GPV=1;SPV=0.049052;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:8,3:20,5
+chr15	51353714	.	TA	T	0	PASS	DP=64;GPV=1;SPV=0.15343;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:24,3:12,1
+chr15	53495192	.	G	T	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,1:3,3
+chr15	54249209	.	C	T	0	PASS	DP=75;GPV=1;SPV=0.0059483;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:20,6:18,5
+chr15	54687307	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:33:0,5:0,3:0,2
+chr15	55210213	.	A	ATG	0	PASS	DP=59;GPV=1;SPV=0.0019705;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,12:12,9:8,3
+chr15	60065017	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:5,7:4,1
+chr15	63466031	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.047817;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:6,3:10,5
+chr15	64277781	.	ATATAT	A	0	PASS	DP=109;GPV=1;SPV=0.038165;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:19,3:21,7
+chr15	64715925	.	TAC	T	0	PASS	DP=58;GPV=1;SPV=0.089726;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:25,4:10,3
+chr15	66551345	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.0036895;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,10:7,9:4,1
+chr15	66616079	.	C	T	0	PASS	DP=112;GPV=1;SPV=0.00015443;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:52,16:19,8:33,8
+chr15	67353366	.	T	A	0	PASS	DP=84;GPV=1;SPV=0.007321;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:38,8:27,5:11,3
+chr15	68269598	.	CAA	C	0	PASS	DP=39;GPV=1;SPV=0.01391;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,7:5,6:6,1
+chr15	69534230	.	A	ATTT	0	PASS	DP=47;GPV=1;SPV=0.01494;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,8:5,4:7,4
+chr15	72163112	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.00072854;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:21,6:18,4
+chr15	72725059	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.043517;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:18,2:15,4
+chr15	73238271	.	GTTTTTTT	G	0	PASS	DP=35;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,7:5,4:4,3
+chr15	73661242	.	AAAAG	A	0	PASS	DP=42;GPV=1;SPV=0.012052;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:7,9:8,2
+chr15	73898880	.	A	AAAAAAAAAAT	0	PASS	DP=19;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,5:3,4:0,1
+chr15	74939066	.	C	CAAAAAAAAA	0	PASS	DP=46;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,7:3,6:3,1
+chr15	75432685	.	C	CA	0	PASS	DP=61;GPV=1;SPV=0.017254;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,12:13,10:9,2
+chr15	75503490	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:16,3:24,2
+chr15	75503628	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:13,2:16,2
+chr15	75830581	.	C	CA	0	PASS	DP=107;GPV=1;SPV=6.1657e-05;SS=2;SSC=42;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:49,19:23,9:26,10
+chr15	77408156	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.021295;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:24,10:10,6:14,4
+chr15	77992856	.	C	CCCACT	0	PASS	DP=20;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,2:0,0:5,2
+chr15	80089259	.	G	GTT	0	PASS	DP=54;GPV=1;SPV=0.02247;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,8:8,7:9,1
+chr15	81258773	.	C	A	0	PASS	DP=84;GPV=1;SPV=0.00081654;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:16,4:21,8
+chr15	82337538	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.0096214;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:17,2:17,9
+chr15	82341038	.	G	T	0	PASS	DP=116;GPV=1;SPV=0.024526;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:11,7:32,6
+chr15	82524026	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:12,2:2,2
+chr15	83340285	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.065677;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:18,3:26,2
+chr15	83384284	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.1625;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:10,1:19,4
+chr15	83450759	.	C	CTT	0	PASS	DP=17;GPV=1;SPV=0.2381;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,3:0,1:3,2
+chr15	84520959	.	A	C	0	PASS	DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:18,1:14,3
+chr15	84700593	.	CAAAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:18,4:0,0
+chr15	84777696	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.0011108;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:13,8:7,3
+chr15	84796237	.	AAAATATATATATATATATATATATATATTTTATATATATAT	A	0	PASS	DP=17;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:2,6:2,5:0,1
+chr15	84885731	.	C	CAA	0	PASS	DP=54;GPV=1;SPV=0.0082261;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,6:10,5:7,1
+chr15	85245352	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.020407;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:1,2:11,4
+chr15	85270641	.	G	A	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr15	86104945	.	C	A	0	PASS	DP=87;GPV=1;SPV=6.3166e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:18,11:15,3
+chr15	87417776	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.03701;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:38,13:19,8:19,5
+chr15	88540969	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:20,1:11,3
+chr15	88552759	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:7,2:10,2
+chr15	88966789	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.038586;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:22,2:17,6
+chr15	90129213	.	A	G	0	PASS	DP=73;GPV=1;SPV=0.014644;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:13,4:13,8
+chr15	90173939	.	A	ATTTT	0	PASS	DP=70;GPV=1;SPV=0.017079;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:13,7:15,5
+chr15	90328484	.	C	CTTT	0	PASS	DP=49;GPV=1;SPV=0.0085654;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:16,8:6,3
+chr15	90331980	.	AGG	A	0	PASS	DP=68;GPV=1;SPV=0.033614;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:15,2:15,3
+chr15	90331984	.	A	G	0	PASS	DP=74;GPV=1;SPV=0.024272;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,6:17,2:18,4
+chr15	90331991	.	AAG	A	0	PASS	DP=75;GPV=1;SPV=0.064197;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,4:21,1:12,3
+chr15	90392748	.	C	CTTTTT	0	PASS	DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:11,3:4,2
+chr15	91196879	.	G	A	0	PASS	DP=110;GPV=1;SPV=5.473e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:42,13:29,6:13,7
+chr15	93131667	.	T	TA	0	PASS	DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:14,1:20,3
+chr15	94162147	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:11,3:17,1
+chr15	94868218	.	C	CT	0	PASS	DP=57;GPV=1;SPV=0.026312;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:9,9:12,2
+chr15	95581318	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.0012733;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:18,7:17,4
+chr15	95948056	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:18,8:13,4
+chr15	96357729	.	A	T	0	PASS	DP=69;GPV=1;SPV=0.071891;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:6,2:30,3
+chr15	96470894	.	C	T	0	PASS	DP=107;GPV=1;SPV=0.006601;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:54,9:29,5:25,4
+chr15	96707509	.	G	T	0	PASS	DP=106;GPV=1;SPV=0.0027396;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:48,9:23,4:25,5
+chr15	100377498	.	AT	A	0	PASS	DP=63;GPV=1;SPV=0.033697;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:18,5:15,2
+chr15	101920402	.	G	A	0	PASS	DP=116;GPV=1;SPV=0.0086553;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:44,17:24,6:20,11
+chr15	101928520	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.034006;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:46,11:21,4:25,7
+chr16	579814	.	T	A	0	PASS	DP=47;GPV=1;SPV=0.041011;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:14,1:4,3
+chr16	1011197	.	C	G	0	PASS	DP=24;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,2:2,1:4,1
+chr16	1466923	.	CAA	C	0	PASS	DP=54;GPV=1;SPV=0.011302;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,9:13,8:7,1
+chr16	1593399	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.0016018;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:16,8:27,4
+chr16	2343751	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.1436;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:16,2:19,3
+chr16	2441937	.	T	TTATA	0	PASS	DP=24;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:4,5:1,1
+chr16	3657602	.	T	C	0	PASS	DP=118;GPV=1;SPV=6.3106e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:52,16:33,9:19,7
+chr16	4621368	.	A	T	0	PASS	DP=96;GPV=1;SPV=0.049419;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:28,4:13,2
+chr16	5183258	.	C	T	0	PASS	DP=130;GPV=1;SPV=8.6019e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:58,15:28,8:30,7
+chr16	5827911	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.018191;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:4,1:21,5
+chr16	5895759	.	G	A	0	PASS	DP=85;GPV=1;SPV=9.8817e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:12,10:20,3
+chr16	6170796	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.00014469;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:14,6:11,6
+chr16	6442611	.	C	T	0	PASS	DP=104;GPV=1;SPV=0.00025381;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:24,10:19,2
+chr16	6487690	.	AAAAAAAAAAAATATATAT	A	0	PASS	DP=20;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,2:4,1:0,1
+chr16	6694859	.	A	G	0	PASS	DP=104;GPV=1;SPV=3.4067e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:41,15:14,5:27,10
+chr16	6955677	.	TTAGGTATGTATG	T	0	PASS	DP=79;GPV=1;SPV=0.11312;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:30,5:12,1:18,4
+chr16	7165410	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:16,2:11,2
+chr16	7810991	.	T	TATGTGTGTGG	0	PASS	DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:13,6:7,4
+chr16	8382337	.	G	T	0	PASS	DP=92;GPV=1;SPV=0.0073566;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:19,4:17,2
+chr16	8660816	.	A	G	0	PASS	DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:8,5:0,2
+chr16	8999575	.	CTTAT	C	0	PASS	DP=88;GPV=1;SPV=0.0060651;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:35,17:17,9:18,8
+chr16	9292581	.	A	G	0	PASS	DP=100;GPV=1;SPV=0.049919;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:14,3:29,3
+chr16	9437492	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.00071257;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:18,5:18,5
+chr16	9597697	.	CA	C	0	PASS	DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:8,6:4,1
+chr16	9970635	.	T	TA	0	PASS	DP=90;GPV=1;SPV=0.0051091;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:48,12:24,7:24,5
+chr16	10268417	.	C	T	0	PASS	DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:8,3:10,1
+chr16	10568780	.	C	CTT	0	PASS	DP=34;GPV=1;SPV=0.017079;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:6,5:2,1
+chr16	12243985	.	G	C	0	PASS	DP=104;GPV=1;SPV=0.00014785;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:46,15:30,8:16,7
+chr16	13216133	.	G	T	0	PASS	DP=85;GPV=1;SPV=0.00026114;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:19,8:16,5
+chr16	13746557	.	CT	C	0	PASS	DP=101;GPV=1;SPV=0.00025924;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:45,14:24,9:21,5
+chr16	14785942	.	T	A	0	PASS	DP=83;GPV=1;SPV=0.04208;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:18,2:22,3
+chr16	15308471	.	G	C	0	PASS	DP=52;GPV=1;SPV=0.036166;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:13,5:12,1
+chr16	16470372	.	T	TCTTCCTTCCTTC	0	PASS	DP=115;GPV=1;SPV=0.013337;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:46,14:11,2:35,12
+chr16	16701811	.	C	CT	0	PASS	DP=70;GPV=1;SPV=0.034293;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,6:19,1:16,5
+chr16	16717740	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,0:5,3
+chr16	16959714	.	TTTTTTTTAATTTAAAAAAAC	T	0	PASS	DP=63;GPV=1;SPV=0.018681;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:7,5:15,4
+chr16	17603381	.	AT	A	0	PASS	DP=40;GPV=1;SPV=0.014137;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:10,3:5,3
+chr16	18151399	.	A	C	0	PASS	DP=70;GPV=1;SPV=0.041183;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:20,8:11,6:9,2
+chr16	18238291	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.030078;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:25,8:12,4
+chr16	18246717	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:1,1:7,4
+chr16	21026700	.	C	CA	0	PASS	DP=50;GPV=1;SPV=0.011322;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,9:9,8:8,1
+chr16	21155621	.	CA	C	0	PASS	DP=52;GPV=1;SPV=0.0029033;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:10,10:5,8:5,2
+chr16	21177619	.	C	CT	0	PASS	DP=46;GPV=1;SPV=0.008557;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:12,11:2,1
+chr16	21613168	.	CTTTTTTTTTTTTTTTT	C	0	PASS	DP=29;GPV=1;SPV=0.00028986;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:5,14:2,11:3,3
+chr16	22173903	.	G	GTATATATATA	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:7,1:16,3
+chr16	22627936	.	CAA	C	0	PASS	DP=112;GPV=1;SPV=0.043079;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:45,12:29,6:16,6
+chr16	23207170	.	C	T	0	PASS	DP=106;GPV=1;SPV=3.4959e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:38,17:23,13:15,4
+chr16	23374573	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.043779;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:11,5:4,2
+chr16	23902732	.	C	CCCTCCCTCCCTCCCTCCCTT	0	PASS	DP=27;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:0,0:10,4
+chr16	24432837	.	T	C	0	PASS	DP=67;GPV=1;SPV=0.029998;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:20,3:9,5
+chr16	24579241	.	G	GTTTTTT	0	PASS	DP=54;GPV=1;SPV=0.015771;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,11:13,9:5,2
+chr16	24588697	.	T	C	0	PASS	DP=70;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:16,4:13,1:3,3
+chr16	24627697	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:5,6:9,3
+chr16	25059861	.	C	CT	0	PASS	DP=50;GPV=1;SPV=0.01597;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:9,5:8,6
+chr16	26177870	.	CTT	C	0	PASS	DP=41;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:6,5:6,2
+chr16	26766064	.	AGAT	A	0	PASS	DP=93;GPV=1;SPV=0.023442;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:23,3:11,3
+chr16	26770730	.	T	TTAGA	0	PASS	DP=56;GPV=1;SPV=0.01641;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:19,3:3,3
+chr16	26958789	.	ATATATTTT	A	0	PASS	DP=63;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:13,11:8,4:5,7
+chr16	27265161	.	C	CTTTTT	0	PASS	DP=18;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,5:2,2:2,3
+chr16	28464022	.	A	G	0	PASS	DP=63;GPV=1;SPV=0.10662;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:29,2:7,3
+chr16	28662310	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.048554;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:7,2:14,4
+chr16	28810791	.	T	C	0	PASS	DP=119;GPV=1;SPV=0.025834;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:57,15:16,10:41,5
+chr16	29504437	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.041011;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:9,3:9,1
+chr16	29504509	.	AAT	A	0	PASS	DP=81;GPV=1;SPV=0.025941;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,7:15,1:17,6
+chr16	30499712	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:6,5:7,1
+chr16	30499730	.	TA	T	0	PASS	DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,2:8,2
+chr16	31104840	.	G	A	0	PASS	DP=184;GPV=1;SPV=0.019899;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:79,15:38,11:41,4
+chr16	31220456	.	G	GT	0	PASS	DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:3,3:6,1
+chr16	31989663	.	T	C	0	PASS	DP=63;GPV=1;SPV=0.028667;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:13,1:17,5
+chr16	32083617	.	C	A	0	PASS	DP=233;GPV=1;SPV=0.040993;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:129:110,19:43,3:67,16
+chr16	32143910	.	A	G	0	PASS	DP=180;GPV=1;SPV=0.0078097;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:111:92,19:48,17:44,2
+chr16	32288934	.	A	C	0	PASS	DP=128;GPV=1;SPV=0.013189;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:68,8:36,6:32,2
+chr16	32300620	.	T	TTAAAA	0	PASS	DP=66;GPV=1;SPV=0.048123;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,6:20,5:10,1
+chr16	32383739	.	G	A	0	PASS	DP=108;GPV=1;SPV=0.04495;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:54,8:29,3:25,5
+chr16	32441647	.	C	A	0	PASS	DP=213;GPV=1;SPV=0.020195;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:88,19:45,4:43,15
+chr16	32441648	.	CTT	C	0	PASS	DP=213;GPV=1;SPV=0.045156;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:87,16:42,3:45,13
+chr16	32545620	.	T	TAA	0	PASS	DP=124;GPV=1;SPV=0.023547;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:64,22:31,18:33,4
+chr16	32802161	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:11,4:0,0
+chr16	32812264	.	G	A	0	PASS	DP=114;GPV=1;SPV=0.018772;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:54,6:31,5:23,1
+chr16	32862141	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.069027;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:16,3:15,2
+chr16	32982841	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:14,4:1,1
+chr16	33018909	.	G	C	0	PASS	DP=86;GPV=1;SPV=0.039534;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:20,10:23,4
+chr16	33057658	.	T	A	0	PASS	DP=96;GPV=1;SPV=0.039144;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:15,1:36,5
+chr16	33777396	.	TTG	T	0	PASS	DP=98;GPV=1;SPV=0.03143;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:14,9:28,3
+chr16	34258608	.	A	T	0	PASS	DP=89;GPV=1;SPV=0.0016161;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:24,7:15,3
+chr16	35857796	.	A	T	0	PASS	DP=98;GPV=1;SPV=4.8866e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:11,5:25,8
+chr16	35905106	.	A	T	0	PASS	DP=83;GPV=1;SPV=0.00014322;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:17,3:12,8
+chr16	37737580	.	G	A	0	PASS	DP=140;GPV=1;SPV=0.020107;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:60,14:11,4:49,10
+chr16	46386931	.	T	C	0	PASS	DP=13529;GPV=1;SPV=0.014552;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:7486:6666,807:4068,379:2598,428
+chr16	46391132	.	T	C	0	PASS	DP=15299;GPV=1;SPV=0.0021004;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:7644:6746,838:2104,221:4642,617
+chr16	46446274	.	T	G	0	PASS	DP=469;GPV=1;SPV=0.037765;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:261:225,36:106,15:119,21
+chr16	47074889	.	C	CA	0	PASS	DP=61;GPV=1;SPV=0.003791;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,9:14,8:8,1
+chr16	48482430	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.044124;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:14,5:6,3
+chr16	51719029	.	CAA	C	0	PASS	DP=52;GPV=1;SPV=0.004738;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,10:7,9:9,1
+chr16	52992519	.	AAG	A	0	PASS	DP=57;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,5:17,3:5,2
+chr16	53742793	.	C	T	0	PASS	DP=91;GPV=1;SPV=0.00022082;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:21,4:15,8
+chr16	55078551	.	G	GA	0	PASS	DP=79;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:42:1,3:0,0:1,3
+chr16	56277776	.	TACACACACACACACACACACAC	T	0	PASS	DP=46;GPV=1;SPV=0.0019985;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,8:4,7:2,1
+chr16	56596519	.	AG	A	0	PASS	DP=61;GPV=1;SPV=0.11061;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:11,2:24,3
+chr16	56825205	.	CT	C	0	PASS	DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,3:3,1
+chr16	56930231	.	G	T	0	PASS	DP=92;GPV=1;SPV=0.038859;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:23,5:18,2
+chr16	57006413	.	C	CTTT	0	PASS	DP=35;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,6:6,4:5,2
+chr16	57327670	.	CAAAAAAAAAAAAAAAA	C	0	PASS	DP=29;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:5,5:3,1
+chr16	57414410	.	CTT	C	0	PASS	DP=41;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,11:9,8:2,3
+chr16	58675346	.	G	GA	0	PASS	DP=57;GPV=1;SPV=0.020195;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,10:13,9:5,1
+chr16	60011342	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.020403;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:21,19:15,15:6,4
+chr16	60527880	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.042807;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:13,4:14,2
+chr16	61167057	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00020665;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:17,11:19,3
+chr16	61466756	.	G	T	0	PASS	DP=80;GPV=1;SPV=7.3327e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:10,6:13,7
+chr16	61634118	.	GT	G	0	PASS	DP=99;GPV=1;SPV=0.044109;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:28,5:16,4
+chr16	61812854	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.0013605;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:20,5:16,7
+chr16	62057788	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.0014811;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:45,12:22,5:23,7
+chr16	62126380	.	G	GTA	0	PASS	DP=50;GPV=1;SPV=0.074336;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,5:14,1:8,4
+chr16	62946969	.	T	C	0	PASS	DP=101;GPV=1;SPV=0.00013409;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:44,15:21,7:23,8
+chr16	63084008	.	G	T	0	PASS	DP=77;GPV=1;SPV=0.0037159;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:19,6:17,4
+chr16	63084012	.	G	T	0	PASS	DP=73;GPV=1;SPV=0.049892;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:18,4:18,1
+chr16	63509414	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.0042232;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:22,3:18,7
+chr16	64257783	.	A	C	0	PASS	DP=91;GPV=1;SPV=0.00057799;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:27,6:14,7
+chr16	64560021	.	TTC	T	0	PASS	DP=59;GPV=1;SPV=0.060214;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:14,2:12,2
+chr16	65012026	.	A	G	0	PASS	DP=111;GPV=1;SPV=1.8341e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:44,16:20,9:24,7
+chr16	65463338	.	G	A	0	PASS	DP=100;GPV=1;SPV=5.3308e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:35,16:15,7:20,9
+chr16	65893148	.	AT	A	0	PASS	DP=74;GPV=1;SPV=0.042684;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:12,4:17,4
+chr16	66861190	.	AAAG	A	0	PASS	DP=82;GPV=1;SPV=0.0051799;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:18,11:11,3
+chr16	68010049	.	TTTCC	T	0	PASS	DP=70;GPV=1;SPV=0.017879;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:6,6:20,7
+chr16	68753212	.	C	CAA	0	PASS	DP=57;GPV=1;SPV=0.043206;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,7:11,5:6,2
+chr16	68928298	.	A	ATTT	0	PASS	DP=44;GPV=1;SPV=0.047286;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:6,3:10,3
+chr16	68980437	.	T	A	0	PASS	DP=31;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,11:5,6:4,5
+chr16	70039712	.	C	T	0	PASS	DP=121;GPV=1;SPV=0.0007532;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:57,12:30,6:27,6
+chr16	70052158	.	C	CGG	0	PASS	DP=59;GPV=1;SPV=0.020186;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:16,9:4,1
+chr16	70825625	.	G	C	0	PASS	DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:12,1:11,5
+chr16	70941764	.	T	C	0	PASS	DP=101;GPV=1;SPV=0.032479;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:19,4:24,5
+chr16	71134600	.	G	C	0	PASS	DP=113;GPV=1;SPV=0.016085;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:57,7:33,1:24,6
+chr16	71148368	.	A	G	0	PASS	DP=108;GPV=1;SPV=0.004694;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:49,8:29,7:20,1
+chr16	71163030	.	T	C	0	PASS	DP=105;GPV=1;SPV=0.030587;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:58,7:30,1:28,6
+chr16	72545153	.	C	T	0	PASS	DP=97;GPV=1;SPV=4.6265e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:32,20:19,12:13,8
+chr16	74082162	.	GTT	G	0	PASS	DP=50;GPV=1;SPV=0.028182;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:19,3:7,6
+chr16	74494403	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,7:3,5:2,2
+chr16	75873770	.	G	A	0	PASS	DP=99;GPV=1;SPV=8.0875e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:31,22:11,8:20,14
+chr16	76098933	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,5:8,4:8,1
+chr16	76937902	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,2:11,2
+chr16	77469657	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.0019982;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:23,3:16,5
+chr16	78002391	.	G	C	0	PASS	DP=62;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,5:11,1:12,4
+chr16	79289867	.	T	TTTTTTTTTTTTTC	0	PASS	DP=56;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:15,8:9,3:6,5
+chr16	80010206	.	A	G	0	PASS	DP=70;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:7,4:5,3:2,1
+chr16	80142912	.	C	T	0	PASS	DP=113;GPV=1;SPV=0.0055347;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:29,5:14,1
+chr16	83659785	.	CT	C	0	PASS	DP=48;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:8,12:5,7:3,5
+chr16	84697711	.	T	G	0	PASS	DP=30;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:2,6:5,1
+chr16	85855426	.	CATAT	C	0	PASS	DP=46;GPV=1;SPV=0.046683;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,5:12,4:4,1
+chr16	86791022	.	C	A	0	PASS	DP=121;GPV=1;SPV=0.00039387;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:56,13:28,8:28,5
+chr16	87174641	.	TTTGTTTTTTTTTTG	T	0	PASS	DP=31;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,4:4,2:4,2
+chr16	87193365	.	TAC	T	0	PASS	DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:3,8:1,7:2,1
+chr16	87928756	.	CTTTGTTTTTT	C	0	PASS	DP=26;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,6:3,3:3,3
+chr16	88371972	.	C	CCAT	0	PASS	DP=60;GPV=1;SPV=0.17398;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,4:13,2:21,2
+chr16	88545320	.	G	GT	0	PASS	DP=112;GPV=1;SPV=0.00024453;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:49,13:25,7:24,6
+chr16	88862588	.	C	G	0	PASS	DP=80;GPV=1;SPV=0.039374;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:13,6:14,2
+chr16	88988070	.	C	CTT	0	PASS	DP=73;GPV=1;SPV=0.032244;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:2,4:27,5
+chr16	89215991	.	G	C	0	PASS	DP=119;GPV=1;SPV=8.7205e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:43,19:22,11:21,8
+chr16	89411921	.	G	C	0	PASS	DP=63;GPV=1;SPV=0.024173;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:6,4:20,1
+chr16	89536520	.	C	CAGGTGAGGCAGGTG	0	PASS	DP=63;GPV=1;SPV=0.053676;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,6:16,4:14,2
+chr16	89634091	.	C	CTTTTTT	0	PASS	DP=21;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,4:0,3:3,1
+chr16	89688077	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.018492;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:8,4:1,1
+chr16	89812652	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.037909;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:17,5:16,2
+chr17	244209	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.046149;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,7:18,4:6,3
+chr17	314822	.	T	C	0	PASS	DP=213;GPV=1;SPV=0.038495;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:91,18:50,8:41,10
+chr17	402995	.	C	G	0	PASS	DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:4,1:11,4
+chr17	415383	.	TTG	T	0	PASS	DP=48;GPV=1;SPV=0.16171;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:8,3:19,1
+chr17	672169	.	A	C	0	PASS	DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,1:5,3
+chr17	942611	.	C	A	0	PASS	DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,2:7,2
+chr17	1256435	.	GT	G	0	PASS	DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:13,4:5,3
+chr17	2356376	.	G	C	0	PASS	DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,2:7,2
+chr17	2730521	.	T	TTGTG	0	PASS	DP=59;GPV=1;SPV=0.011346;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,10:10,9:6,1
+chr17	2772859	.	T	C	0	PASS	DP=64;GPV=1;SPV=0.021388;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:11,3:13,4
+chr17	3320546	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.046548;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:6,4:11,1
+chr17	3635245	.	G	GGAAGGAA	0	PASS	DP=47;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,4:16,3:0,1
+chr17	3641384	.	A	T	0	PASS	DP=29;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,3:2,2:1,1
+chr17	6941618	.	T	TCTCACTCTCA	0	PASS	DP=31;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:5,1:12,3
+chr17	7073723	.	CA	C	0	PASS	DP=55;GPV=1;SPV=0.020195;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,10:13,8:5,2
+chr17	7274080	.	CAA	C	0	PASS	DP=44;GPV=1;SPV=0.031608;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,7:10,5:5,2
+chr17	7277976	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.011316;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,9:8,8:4,1
+chr17	7378264	.	AGAG	A	0	PASS	DP=36;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:3,4:10,1
+chr17	8363861	.	ATT	A	0	PASS	DP=58;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,4:3,1:14,3
+chr17	10881914	.	GACAA	G	0	PASS	DP=75;GPV=1;SPV=0.038125;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:18,3:17,2
+chr17	11509020	.	C	CCAGCTGATTATAAAAT	0	PASS	DP=58;GPV=1;SPV=0.03973;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:9,5:10,2
+chr17	11707959	.	CCACACACACACACACA	C	0	PASS	DP=54;GPV=1;SPV=0.076205;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,4:16,3:7,1
+chr17	12452680	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.0019875;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:10,1:12,7
+chr17	12630428	.	G	C	0	PASS	DP=84;GPV=1;SPV=0.0094429;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:16,2:18,4
+chr17	13082355	.	ATG	A	0	PASS	DP=57;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:15,3:13,1
+chr17	13687794	.	T	C	0	PASS	DP=90;GPV=1;SPV=0.0014365;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:19,4:20,6
+chr17	14186097	.	G	A	0	PASS	DP=127;GPV=1;SPV=0.039231;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:51,11:27,9:24,2
+chr17	14346247	.	C	CTT	0	PASS	DP=27;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,4:1,3:2,1
+chr17	16161240	.	C	G	0	PASS	DP=85;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:28,5:17,4:11,1
+chr17	18395786	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:1,2:16,7
+chr17	18926236	.	A	ATTAT	0	PASS	DP=74;GPV=1;SPV=0.009672;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:9,1:11,6
+chr17	19700763	.	CA	C	0	PASS	DP=51;GPV=1;SPV=0.0071869;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:10,7:4,2
+chr17	20099511	.	C	CA	0	PASS	DP=62;GPV=1;SPV=0.015677;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,8:12,7:3,1
+chr17	20309815	.	CTT	C	0	PASS	DP=36;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:5,2:7,6
+chr17	20554552	.	C	T	0	PASS	DP=127;GPV=1;SPV=0.016944;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:48,14:26,12:22,2
+chr17	21347012	.	T	C	0	PASS	DP=98;GPV=1;SPV=0.019345;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:24,6:15,1
+chr17	21429100	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.041253;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:20,3:23,2
+chr17	21618605	.	C	G	0	PASS	DP=128;GPV=1;SPV=0.0017091;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:65,12:31,7:34,5
+chr17	21638255	.	C	CT	0	PASS	DP=74;GPV=1;SPV=0.052808;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:15,1:22,4
+chr17	21745153	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.0079024;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:9,8:8,6
+chr17	21906166	.	C	G	0	PASS	DP=88;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:35,4:19,2:16,2
+chr17	23165463	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:7,4:0,0
+chr17	26522412	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:12,2:3,2
+chr17	26578810	.	C	A	0	PASS	DP=92;GPV=1;SPV=0.04645;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:16,4:17,4
+chr17	26601793	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:1,1:17,3
+chr17	26630320	.	A	C	0	PASS	DP=47;GPV=1;SPV=0.10922;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:20,3:14,1:6,2
+chr17	26742711	.	A	G	0	PASS	DP=228;GPV=1;SPV=0.0036329;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:116:80,26:33,18:47,8
+chr17	26743898	.	G	T	0	PASS	DP=307;GPV=1;SPV=0.0407;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:128,27:69,17:59,10
+chr17	26955510	.	ATAT	A	0	PASS	DP=159;GPV=1;SPV=0.0079553;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:72,18:37,15:35,3
+chr17	28488776	.	C	T	0	PASS	DP=108;GPV=1;SPV=0.00010626;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:47,15:34,7:13,8
+chr17	28894616	.	CT	C	0	PASS	DP=39;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:6,4:8,3
+chr17	29691498	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.013018;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:40,8:21,4:19,4
+chr17	30466795	.	T	C	0	PASS	DP=88;GPV=1;SPV=2.3687e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:32,15:13,8:19,7
+chr17	30846409	.	T	C	0	PASS	DP=64;GPV=1;SPV=0.0054479;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:12,5:9,6
+chr17	32072443	.	A	AC	0	PASS	DP=87;GPV=1;SPV=0.020415;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:15,7:14,2
+chr17	32653607	.	CAA	C	0	PASS	DP=52;GPV=1;SPV=0.00076786;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,18:11,13:3,5
+chr17	33436853	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.17622;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,4:1,2:4,2
+chr17	35561745	.	AAAAAAAAG	A	0	PASS	DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:5,6:4,4
+chr17	37260301	.	T	A	0	PASS	DP=18;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,3:3,2:1,1
+chr17	38202136	.	G	GATATATATATATAT	0	PASS	DP=40;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,5:16,3:5,2
+chr17	38944848	.	A	ATGTGTGTGTGTGTGTGTG	0	PASS	DP=43;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,8:8,7:4,1
+chr17	39170524	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:8,5:4,3
+chr17	39355855	.	C	CAA	0	PASS	DP=51;GPV=1;SPV=0.012394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,6:13,5:4,1
+chr17	39498513	.	G	A	0	PASS	DP=89;GPV=1;SPV=1.2992e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,17:15,9:18,8
+chr17	40679936	.	T	A	0	PASS	DP=84;GPV=1;SPV=2.607e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,16:14,7:12,9
+chr17	41094456	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.0002133;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:38,13:27,3:11,10
+chr17	41151528	.	C	T	0	PASS	DP=100;GPV=1;SPV=0.00017414;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:22,8:21,6
+chr17	41330198	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:5,2:3,1:2,1
+chr17	41633660	.	GGT	G	0	PASS	DP=86;GPV=1;SPV=0.039014;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,9:19,6:16,3
+chr17	42048377	.	A	C	0	PASS	DP=69;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:5,2:3,1:2,1
+chr17	42356541	.	T	A	0	PASS	DP=96;GPV=1;SPV=0.0010854;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:21,4:22,7
+chr17	44181155	.	G	GGGT	0	PASS	DP=68;GPV=1;SPV=0.050247;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:21,2:8,2
+chr17	44640699	.	TA	T	0	PASS	DP=94;GPV=1;SPV=0.30655;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:27,3:15,2:12,1
+chr17	44954088	.	C	A	0	PASS	DP=122;GPV=1;SPV=0.00046201;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:55,12:32,8:23,4
+chr17	44985119	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.023036;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:15,2:11,8
+chr17	45603026	.	C	G	0	PASS	DP=75;GPV=1;SPV=0.033857;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:39,12:33,6:6,6
+chr17	45791854	.	A	T	0	PASS	DP=87;GPV=1;SPV=0.020048;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:16,5:15,3
+chr17	46125081	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,2:6,2:0,0
+chr17	46213288	.	T	TTTG	0	PASS	DP=179;GPV=1;SPV=0.026147;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:65,19:40,12:25,7
+chr17	46228676	.	T	TTTG	0	PASS	DP=125;GPV=1;SPV=0.0079248;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:40,16:27,11:13,5
+chr17	46232324	.	G	C	0	PASS	DP=114;GPV=1;SPV=0.015123;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:52,12:27,10:25,2
+chr17	46256885	.	T	TG	0	PASS	DP=170;GPV=1;SPV=0.029088;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:63,16:30,13:33,3
+chr17	46688553	.	C	G	0	PASS	DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:5,4:13,4
+chr17	47000064	.	T	A	0	PASS	DP=46;GPV=1;SPV=0.078605;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:17,3:8,3
+chr17	47724490	.	A	T	0	PASS	DP=92;GPV=1;SPV=0.0002844;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:18,5:21,8
+chr17	48224071	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:6,1:1,1
+chr17	48541816	.	C	T	0	PASS	DP=52;GPV=1;SPV=0.013977;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:2,1:22,7
+chr17	49395490	.	T	TTTC	0	PASS	DP=57;GPV=1;SPV=0.03973;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:6,2:13,5
+chr17	49504773	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.0029007;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:7,1:3,5
+chr17	51854780	.	C	T	0	PASS	DP=116;GPV=1;SPV=0.00094598;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:53,11:28,5:25,6
+chr17	52712033	.	G	C	0	PASS	DP=89;GPV=1;SPV=0.0234;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:21,11:18,4
+chr17	52783194	.	T	G	0	PASS	DP=80;GPV=1;SPV=0.031171;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:20,2:20,4
+chr17	53021068	.	G	GT	0	PASS	DP=99;GPV=1;SPV=0.00098386;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:49,14:33,7:16,7
+chr17	53627705	.	ACAACT	A	0	PASS	DP=78;GPV=1;SPV=0.064931;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:27,3:14,2
+chr17	53855532	.	C	CA	0	PASS	DP=71;GPV=1;SPV=0.0040897;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:16,5:13,3
+chr17	53909895	.	G	A	0	PASS	DP=75;GPV=1;SPV=0.00047197;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:18,5:11,6
+chr17	54139013	.	ATT	A	0	PASS	DP=39;GPV=1;SPV=0.022502;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:8,4:9,3
+chr17	55506816	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:3,2:3,1
+chr17	59219059	.	ATTTTTTTTTTTT	A	0	PASS	DP=27;GPV=1;SPV=0.27897;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:15,3:5,1:10,2
+chr17	59673100	.	T	G	0	PASS	DP=83;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:50:1,3:0,2:1,1
+chr17	63742930	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:8,5:9,2
+chr17	64082704	.	T	C	0	PASS	DP=93;GPV=1;SPV=1.4092e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:30,13:20,6:10,7
+chr17	65147587	.	C	CTTT	0	PASS	DP=47;GPV=1;SPV=0.057853;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,7:12,5:10,2
+chr17	65460125	.	C	T	0	PASS	DP=87;GPV=1;SPV=8.9175e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:22,9:12,5
+chr17	65838091	.	T	TA	0	PASS	DP=95;GPV=1;SPV=0.0054114;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:15,3:31,6
+chr17	65870065	.	G	GA	0	PASS	DP=58;GPV=1;SPV=0.038888;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,8:20,6:2,2
+chr17	66482098	.	CA	C	0	PASS	DP=50;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:7,11:4,9:3,2
+chr17	66746154	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.082922;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:12,3:6,3
+chr17	67089668	.	T	TATATATAGAGAGAGAG	0	PASS	DP=48;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,4:6,2:7,2
+chr17	67309496	.	C	T	0	PASS	DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:31,17:14,6:17,11
+chr17	67767795	.	A	AT	0	PASS	DP=55;GPV=1;SPV=0.057887;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:14,2:13,3
+chr17	67894880	.	T	C	0	PASS	DP=99;GPV=1;SPV=1.7841e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,17:19,8:14,9
+chr17	69197027	.	A	G	0	PASS	DP=64;GPV=1;SPV=0.098288;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:23,4:13,1
+chr17	71295236	.	CTTTTTTTT	C	0	PASS	DP=28;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,7:8,6:3,1
+chr17	72147114	.	A	AAGG	0	PASS	DP=50;GPV=1;SPV=0.068336;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,5:16,4:5,1
+chr17	72504634	.	CA	C	0	PASS	DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:4,6:8,2
+chr17	72754041	.	TATATACACATAC	T	0	PASS	DP=60;GPV=1;SPV=0.0054956;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,10:10,3:5,7
+chr17	73026187	.	G	GAGAGAAGAGAAGAGA	0	PASS	DP=61;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:13,9:4,8:9,1
+chr17	73224840	.	C	G	0	PASS	DP=85;GPV=1;SPV=0.059053;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:48,6:30,3:18,3
+chr17	73855711	.	C	T	0	PASS	DP=105;GPV=1;SPV=5.5727e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:41,19:19,8:22,11
+chr17	74423357	.	TTG	T	0	PASS	DP=83;GPV=1;SPV=0.0065856;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:19,7:5,3:14,4
+chr17	74423362	.	G	T	0	PASS	DP=88;GPV=1;SPV=0.0051054;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:21,7:7,3:14,4
+chr17	74791357	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.038854;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:21,1:15,8
+chr17	75269548	.	CTTTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.075059;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:14,4:3,2
+chr17	75560802	.	T	TA	0	PASS	DP=40;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:10,2:2,4
+chr17	76031286	.	A	ATTT	0	PASS	DP=26;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,2:3,1:1,1
+chr17	76297870	.	GTTTTTTT	G	0	PASS	DP=39;GPV=1;SPV=0.0024201;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,10:11,8:2,2
+chr17	77638792	.	T	G	0	PASS	DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:20,2:0,2
+chr17	77665949	.	T	TCATG	0	PASS	DP=104;GPV=1;SPV=0.045096;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:32,2:12,4
+chr17	77905259	.	T	A	0	PASS	DP=111;GPV=1;SPV=0.00010709;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:47,14:28,4:19,10
+chr17	78635453	.	C	CA	0	PASS	DP=54;GPV=1;SPV=0.019428;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,11:16,8:3,3
+chr17	79283954	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.0040253;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:36,19:21,7:15,12
+chr17	79656702	.	AAGGAAG	A	0	PASS	DP=28;GPV=1;SPV=0.30769;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,2:3,1:3,1
+chr17	80148544	.	CT	C	0	PASS	DP=46;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,6:10,5:8,1
+chr17	80915773	.	A	T	0	PASS	DP=49;GPV=1;SPV=0.019011;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:10,5:8,3
+chr17	81048476	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.0010149;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:22,5:21,5
+chr17	81339604	.	A	G	0	PASS	DP=96;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:4,6:3,2:1,4
+chr17	82746093	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.011327;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,9:12,8:4,1
+chr17	82856751	.	C	G	0	PASS	DP=47;GPV=1;SPV=0.094974;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:19,3:9,1:10,2
+chr17	83032028	.	AC	A	0	PASS	DP=110;GPV=1;SPV=0.039321;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:54,8:24,5:30,3
+chr18	147641	.	CA	C	0	PASS	DP=42;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,10:7,8:7,2
+chr18	696206	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.040316;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:5,4:2,2:3,2
+chr18	731966	.	C	CA	0	PASS	DP=44;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,8:8,7:4,1
+chr18	2986548	.	A	G	0	PASS	DP=74;GPV=1;SPV=0.039801;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:12,6:20,1
+chr18	3926773	.	GAGCACCTAT	G	0	PASS	DP=91;GPV=1;SPV=0.00040227;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:42,15:23,10:19,5
+chr18	3927940	.	C	T	0	PASS	DP=111;GPV=1;SPV=0.00037832;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:14,6:29,4
+chr18	4306464	.	A	T	0	PASS	DP=60;GPV=1;SPV=0.17449;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:21,5:8,4:13,1
+chr18	4510780	.	T	TGTG	0	PASS	DP=74;GPV=1;SPV=0.073744;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,4:13,2:15,2
+chr18	4510905	.	G	GA	0	PASS	DP=198;GPV=1;SPV=0.0034365;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:85,11:41,2:44,9
+chr18	4524842	.	G	A	0	PASS	DP=112;GPV=1;SPV=6.0755e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:51,18:28,12:23,6
+chr18	6432242	.	T	TGCGCGC	0	PASS	DP=94;GPV=1;SPV=0.027616;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,8:21,5:16,3
+chr18	8472568	.	G	GAAGAAAGAAAGA	0	PASS	DP=60;GPV=1;SPV=0.033806;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,9:10,6:9,3
+chr18	9641349	.	T	TAGAA	0	PASS	DP=72;GPV=1;SPV=0.034112;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,6:11,4:16,2
+chr18	11644947	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.04287;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:6,6:9,3
+chr18	12022528	.	A	AAATATATATATATATATAT	0	PASS	DP=22;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:4,1:0,3
+chr18	12874140	.	C	A	0	PASS	DP=116;GPV=1;SPV=0.00020345;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:48,12:28,9:20,3
+chr18	14451784	.	T	A	0	PASS	DP=63;GPV=1;SPV=0.048762;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:19,5:16,2
+chr18	15152436	.	T	A	0	PASS	DP=88;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:22,4:8,2:14,2
+chr18	15406802	.	A	T	0	PASS	DP=181;GPV=1;SPV=0.031533;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:92,11:57,6:35,5
+chr18	15471993	.	G	T	0	PASS	DP=99;GPV=1;SPV=0.021795;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:5,1:37,9
+chr18	15484444	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr18	15494057	.	A	T	0	PASS	DP=64;GPV=1;SPV=0.064403;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:8,1:21,3
+chr18	15517248	.	G	T	0	PASS	DP=358;GPV=1;SPV=0.022723;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:194:169,25:102,13:67,12
+chr18	15520846	.	T	C	0	PASS	DP=218;GPV=1;SPV=0.0080062;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:119:93,26:25,7:68,19
+chr18	15528080	.	T	C	0	PASS	DP=271;GPV=1;SPV=0.028874;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:136:115,21:34,14:81,7
+chr18	15534382	.	G	C	0	PASS	DP=82;GPV=1;SPV=0.0042842;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:33,15:5,6:28,9
+chr18	15540233	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.023885;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:29,13:26,12:3,1
+chr18	15555357	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:2,1:14,5
+chr18	15573280	.	C	A	0	PASS	DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr18	15580200	.	G	C	0	PASS	DP=196;GPV=1;SPV=0.02679;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:93,17:26,3:67,14
+chr18	15582785	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:16,3:4,1
+chr18	15588637	.	C	A	0	PASS	DP=64;GPV=1;SPV=0.049445;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:2,1:29,4
+chr18	15684083	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:15,4:0,0
+chr18	15713707	.	G	C	0	PASS	DP=386;GPV=1;SPV=0.012311;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:226:191,35:94,24:97,11
+chr18	15727235	.	G	C	0	PASS	DP=121;GPV=1;SPV=0.022784;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:57,19:49,17:8,2
+chr18	15727935	.	A	T	0	PASS	DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:1,0:16,4
+chr18	16442072	.	T	C	0	PASS	DP=117;GPV=1;SPV=0.0061782;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:50,16:2,2:48,14
+chr18	16913119	.	A	C	0	PASS	DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,0:5,3
+chr18	16959666	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.048633;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:20,1:2,8
+chr18	17065706	.	G	T	0	PASS	DP=473;GPV=1;SPV=0.022877;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:242:207,35:30,9:177,26
+chr18	17300370	.	A	T	0	PASS	DP=63;GPV=1;SPV=0.0007759;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:22,12:4,1
+chr18	17638914	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,3:5,1
+chr18	17676479	.	C	A	0	PASS	DP=154;GPV=1;SPV=0.046569;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:68,14:51,11:17,3
+chr18	17732441	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:0,0:22,4
+chr18	18040886	.	G	T	0	PASS	DP=122;GPV=1;SPV=0.01615;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:53,8:33,6:20,2
+chr18	18231134	.	G	A	0	PASS	DP=111;GPV=1;SPV=0.019616;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:43,11:5,2
+chr18	19053810	.	T	A	0	PASS	DP=79;GPV=1;SPV=0.013809;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:13,2:21,4
+chr18	19869150	.	T	A	0	PASS	DP=107;GPV=1;SPV=0.049403;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:49,9:11,3:38,6
+chr18	20445267	.	C	A	0	PASS	DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,3:3,2
+chr18	20582385	.	T	G	0	PASS	DP=99;GPV=1;SPV=0.027025;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:26,7:14,4
+chr18	20786158	.	C	G	0	PASS	DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:0,0:5,3
+chr18	20923340	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:0,0:13,4
+chr18	21640623	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,6:3,5:7,1
+chr18	21899266	.	T	G	0	PASS	DP=53;GPV=1;SPV=0.045915;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:10,7:11,3
+chr18	22079428	.	G	GT	0	PASS	DP=102;GPV=1;SPV=0.0006601;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:24,6:22,6
+chr18	25960005	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.044045;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:17,2:25,3
+chr18	27501014	.	C	A	0	PASS	DP=96;GPV=1;SPV=0.017025;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:48,7:23,5:25,2
+chr18	27702207	.	C	T	0	PASS	DP=98;GPV=1;SPV=1.3702e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,18:11,7:17,11
+chr18	28772839	.	T	G	0	PASS	DP=86;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:14,4:6,2:8,2
+chr18	28873679	.	G	C	0	PASS	DP=89;GPV=1;SPV=0.0013442;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:16,6:27,7
+chr18	29311057	.	C	CAAAA	0	PASS	DP=52;GPV=1;SPV=0.062626;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,7:16,6:11,1
+chr18	30454417	.	C	T	0	PASS	DP=109;GPV=1;SPV=0.011449;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:52,7:28,4:24,3
+chr18	31308385	.	AT	A	0	PASS	DP=86;GPV=1;SPV=0.00020572;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:16,5:21,10
+chr18	33610413	.	C	G	0	PASS	DP=80;GPV=1;SPV=0.018132;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:19,3:13,2
+chr18	35214060	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.37564;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,4:8,2:4,2
+chr18	35445026	.	G	GGTGTGTGTGTGTGTGTGTGT	0	PASS	DP=48;GPV=1;SPV=0.022451;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,6:6,3:11,3
+chr18	36133897	.	GTTTTTT	G	0	PASS	DP=42;GPV=1;SPV=0.090553;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,7:11,2:12,5
+chr18	37382878	.	C	T	0	PASS	DP=99;GPV=1;SPV=5.077e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:33,15:15,8:18,7
+chr18	37727602	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.0061213;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:25,3:20,6
+chr18	38567748	.	G	C	0	PASS	DP=99;GPV=1;SPV=0.00015275;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:42,14:23,5:19,9
+chr18	39706587	.	T	A	0	PASS	DP=56;GPV=1;SPV=0.10577;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:6,5:4,3:2,2
+chr18	39863531	.	GCACGCACACACACACA	G	0	PASS	DP=47;GPV=1;SPV=0.014604;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:7,7:7,2
+chr18	40192263	.	C	G	0	PASS	DP=36;GPV=1;SPV=0.0095308;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:9,1:3,5
+chr18	40241814	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.00012515;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,15:15,4:20,11
+chr18	42054126	.	GTATATATATATATATATATATATATATATATATATATATATATATA	G	0	PASS	DP=30;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,6:7,3:4,3
+chr18	42278307	.	C	CAAA	0	PASS	DP=64;GPV=1;SPV=0.010276;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,8:18,4:10,4
+chr18	42922557	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.00046557;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:38,14:19,9:19,5
+chr18	43745787	.	A	AATCT	0	PASS	DP=74;GPV=1;SPV=0.0054715;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:17,15:7,7:10,8
+chr18	45346968	.	AAAATAAAAATAAAAAT	A	0	PASS	DP=83;GPV=1;SPV=0.040632;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,12:16,3:17,9
+chr18	45615840	.	A	T	0	PASS	DP=96;GPV=1;SPV=0.022208;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:53,8:30,4:23,4
+chr18	45830583	.	C	CTTTTT	0	PASS	DP=36;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,5:12,3:3,2
+chr18	46330410	.	C	T	0	PASS	DP=111;GPV=1;SPV=1.8341e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:44,16:24,8:20,8
+chr18	47982777	.	A	AGAGAGG	0	PASS	DP=16;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:5,2:0,0
+chr18	48281933	.	G	C	0	PASS	DP=80;GPV=1;SPV=0.0084605;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:31,16:13,5:18,11
+chr18	51977546	.	C	T	0	PASS	DP=106;GPV=1;SPV=0.0019724;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:30,7:19,3
+chr18	53598647	.	C	T	0	PASS	DP=91;GPV=1;SPV=8.1726e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:17,8:20,7
+chr18	54771591	.	A	AGT	0	PASS	DP=49;GPV=1;SPV=0.011272;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,9:5,5:5,4
+chr18	54980069	.	A	G	0	PASS	DP=64;GPV=1;SPV=0.0098204;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:13,3:12,3
+chr18	55711294	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,6:8,5:5,1
+chr18	56158489	.	C	T	0	PASS	DP=101;GPV=1;SPV=0.00013409;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:44,15:18,8:26,7
+chr18	56736924	.	A	G	0	PASS	DP=96;GPV=1;SPV=0.00018926;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:45,18:15,8:30,10
+chr18	56738798	.	CT	C	0	PASS	DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:8,2:7,2
+chr18	56900082	.	GTATA	G	0	PASS	DP=65;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:2,2:2,1:0,1
+chr18	59882954	.	ATT	A	0	PASS	DP=100;GPV=1;SPV=0.049546;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:25,3:17,7
+chr18	61010065	.	C	A	0	PASS	DP=91;GPV=1;SPV=1.5622e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:16,7:15,7
+chr18	62189275	.	G	GT	0	PASS	DP=66;GPV=1;SPV=0.031485;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,11:11,5:15,6
+chr18	63174820	.	CA	C	0	PASS	DP=54;GPV=1;SPV=0.049356;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:14,7:7,2
+chr18	65891839	.	A	G	0	PASS	DP=94;GPV=1;SPV=0.0013864;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:20,7:23,4
+chr18	67394999	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr18	72173274	.	T	G	0	PASS	DP=94;GPV=1;SPV=5.8144e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:36,20:18,11:18,9
+chr18	72528962	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:8,5:3,2
+chr18	72690942	.	G	A	0	PASS	DP=114;GPV=1;SPV=3.0143e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:46,21:16,7:30,14
+chr18	73899710	.	C	A	0	PASS	DP=92;GPV=1;SPV=3.4355e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,15:16,7:19,8
+chr18	74737392	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.00045086;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:21,5:15,5
+chr18	76028583	.	G	A	0	PASS	DP=94;GPV=1;SPV=1.076e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:36,18:14,10:22,8
+chr18	76458795	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.0044583;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:5,8:11,2
+chr18	77708903	.	G	A	0	PASS	DP=120;GPV=1;SPV=3.6562e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:47,25:23,10:24,15
+chr18	77958179	.	C	A	0	PASS	DP=78;GPV=1;SPV=0.020648;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:21,1:11,4
+chr18	78042031	.	GTT	G	0	PASS	DP=84;GPV=1;SPV=0.0007185;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:24,12:14,7:10,5
+chr18	78513404	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.12395;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:12,4:14,1
+chr18	78840321	.	TGA	T	0	PASS	DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:11,6:3,2
+chr18	79618653	.	A	C	0	PASS	DP=144;GPV=1;SPV=0.035863;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:70,13:31,9:39,4
+chr19	106852	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.052666;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:0,1:21,6
+chr19	160592	.	G	T	0	PASS	DP=192;GPV=1;SPV=0.028659;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:91,12:41,6:50,6
+chr19	190040	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:0,1:4,3
+chr19	350618	.	CAT	C	0	PASS	DP=48;GPV=1;SPV=0.012598;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:4,3:11,4
+chr19	481425	.	AGAAGGATGATGGG	A	0	PASS	DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:12,2:4,2
+chr19	492581	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:4,2:6,3
+chr19	714358	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,5:5,3:10,2
+chr19	1035181	.	G	C	0	PASS	DP=84;GPV=1;SPV=0.044401;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:26,4:15,1
+chr19	1877185	.	C	T	0	PASS	DP=138;GPV=1;SPV=0.022449;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:21,6:25,6
+chr19	2725749	.	C	A	0	PASS	DP=112;GPV=1;SPV=7.7806e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:48,15:32,11:16,4
+chr19	2864729	.	GAAAGAAAAAGAAAA	G	0	PASS	DP=35;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,8:3,1:7,7
+chr19	3528158	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.00073223;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:39,9:14,5:25,4
+chr19	3972314	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,9:2,5:5,4
+chr19	4068661	.	G	T	0	PASS	DP=99;GPV=1;SPV=0.046571;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:52,6:29,4:23,2
+chr19	4232769	.	A	G	0	PASS	DP=86;GPV=1;SPV=0.049454;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,10:18,6:15,4
+chr19	4334836	.	C	CTGTCCA	0	PASS	DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,2:2,3
+chr19	4952393	.	C	CTT	0	PASS	DP=39;GPV=1;SPV=0.11785;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,7:8,5:5,2
+chr19	5463442	.	TTCC	T	0	PASS	DP=56;GPV=1;SPV=0.031089;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:13,1:11,4
+chr19	5516651	.	T	C	0	PASS	DP=67;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:13,10:8,6:5,4
+chr19	6162566	.	C	CAAA	0	PASS	DP=54;GPV=1;SPV=0.037576;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,9:18,8:9,1
+chr19	6287882	.	T	A	0	PASS	DP=89;GPV=1;SPV=4.2775e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:32,19:18,10:14,9
+chr19	6455720	.	T	G	0	PASS	DP=71;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:2,2:2,1:0,1
+chr19	6614552	.	G	GTTT	0	PASS	DP=43;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,7:9,6:3,1
+chr19	6994039	.	T	TAAATAAATAAATAAATAAATAAATAAAC	0	PASS	DP=83;GPV=1;SPV=0.0037845;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,11:13,6:11,5
+chr19	8063855	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:10,3:15,1
+chr19	8423985	.	C	CA	0	PASS	DP=79;GPV=1;SPV=0.035556;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:33,14:20,11:13,3
+chr19	8541425	.	GT	G	0	PASS	DP=51;GPV=1;SPV=0.028446;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:15,8:7,2
+chr19	8785481	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:20,4:0,0
+chr19	8853515	.	A	C	0	PASS	DP=81;GPV=1;SPV=0.049592;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:23,6:14,1
+chr19	8959981	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.015072;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:20,4:22,2
+chr19	9428062	.	A	C	0	PASS	DP=92;GPV=1;SPV=0.00032403;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:21,7:15,4
+chr19	9970015	.	T	TG	0	PASS	DP=42;GPV=1;SPV=0.0021563;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,11:3,4:6,7
+chr19	10196339	.	C	T	0	PASS	DP=109;GPV=1;SPV=4.7992e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:30,4:13,10
+chr19	10307347	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:4,4:1,3:3,1
+chr19	11159637	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:54:0,3:0,2:0,1
+chr19	11974110	.	TTTCTTTCTTTC	T	0	PASS	DP=70;GPV=1;SPV=0.016686;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:8,4:25,8
+chr19	13291633	.	T	TA	0	PASS	DP=73;GPV=1;SPV=0.00011777;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:22,21:16,14:6,7
+chr19	16341517	.	C	T	0	PASS	DP=99;GPV=1;SPV=9.1667e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:36,16:14,7:22,9
+chr19	18072946	.	CAAAA	C	0	PASS	DP=50;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:12,8:7,1
+chr19	18159144	.	C	CTTTTTTTTTTT	0	PASS	DP=28;GPV=1;SPV=0.016908;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:2,4:7,2
+chr19	18201263	.	A	AAAAGAAAG	0	PASS	DP=75;GPV=1;SPV=0.023995;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,8:15,6:14,2
+chr19	19744153	.	CTT	C	0	PASS	DP=66;GPV=1;SPV=0.10771;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:9,2:29,3
+chr19	20890454	.	T	A	0	PASS	DP=65;GPV=1;SPV=0.046474;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:9,2:18,2
+chr19	21709169	.	C	CAA	0	PASS	DP=64;GPV=1;SPV=0.0097243;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,12:14,8:8,4
+chr19	22655736	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.01458;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:9,3:3,6
+chr19	23417434	.	GTATATA	G	0	PASS	DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:8,4:1,1
+chr19	24346300	.	T	C	0	PASS	DP=138;GPV=1;SPV=0.017291;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:86,11:46,6:40,5
+chr19	25408284	.	G	T	0	PASS	DP=34;GPV=1;SPV=0.13636;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:15,3:2,1:13,2
+chr19	26019887	.	T	G	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr19	27414078	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.0013497;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:40,12:20,6:20,6
+chr19	27437536	.	T	C	0	PASS	DP=89;GPV=1;SPV=2.1314e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:18,5:17,13
+chr19	28819963	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.022285;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:26,2:18,4
+chr19	29548626	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.0007833;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:23,7:21,5
+chr19	29782829	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:13,4:1,0
+chr19	29874253	.	G	C	0	PASS	DP=55;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:1,2:1,2:0,0
+chr19	29900314	.	A	C	0	PASS	DP=29;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,5:3,1:3,4
+chr19	32019290	.	GAGAGAGAGAA	G	0	PASS	DP=45;GPV=1;SPV=0.046683;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,5:7,4:9,1
+chr19	32667832	.	C	CAAA	0	PASS	DP=75;GPV=1;SPV=0.006922;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,15:18,11:15,4
+chr19	33961138	.	C	CTTT	0	PASS	DP=56;GPV=1;SPV=0.0040779;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,10:11,4:11,6
+chr19	34451536	.	GT	G	0	PASS	DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:6,4:6,2
+chr19	36428649	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.03385;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:22,4:5,1
+chr19	36975136	.	A	ATTTC	0	PASS	DP=73;GPV=1;SPV=0.027342;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:11,4:20,7
+chr19	37184356	.	AAAAGAAAGAAAG	A	0	PASS	DP=63;GPV=1;SPV=0.032887;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,7:12,3:12,4
+chr19	37283037	.	G	C	0	PASS	DP=95;GPV=1;SPV=0.013084;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:20,3:21,9
+chr19	37551835	.	G	T	0	PASS	DP=85;GPV=1;SPV=0.010281;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,6:17,5:18,1
+chr19	38422132	.	G	A	0	PASS	DP=122;GPV=1;SPV=8.3659e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:58,18:30,8:28,10
+chr19	43765527	.	G	GAC	0	PASS	DP=86;GPV=1;SPV=0.00034173;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,12:15,3:20,9
+chr19	44338836	.	G	A	0	PASS	DP=107;GPV=1;SPV=0.00035589;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:51,15:30,10:21,5
+chr19	45372147	.	T	TGTGTGTGTGTGTGCGC	0	PASS	DP=67;GPV=1;SPV=0.00033727;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:19,15:6,5:13,10
+chr19	45903858	.	C	CAA	0	PASS	DP=66;GPV=1;SPV=0.019414;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,12:18,10:6,2
+chr19	46157787	.	A	C	0	PASS	DP=86;GPV=1;SPV=0.00027053;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:17,6:11,3
+chr19	47051770	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:8,1:18,3
+chr19	47747779	.	CTTT	C	0	PASS	DP=37;GPV=1;SPV=0.0084717;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:5,5:3,3
+chr19	47895696	.	C	CTT	0	PASS	DP=38;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,6:6,4:5,2
+chr19	48153637	.	A	AACAC	0	PASS	DP=45;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,6:8,3:2,3
+chr19	48331200	.	T	C	0	PASS	DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:13,2:8,3
+chr19	48829635	.	C	CTTT	0	PASS	DP=37;GPV=1;SPV=0.11275;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,5:12,4:7,1
+chr19	48958345	.	AT	A	0	PASS	DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:14,2:2,3
+chr19	49182467	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,4:13,2:6,2
+chr19	49544708	.	CAG	C	0	PASS	DP=60;GPV=1;SPV=0.047358;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:10,2:14,7
+chr19	50346024	.	AT	A	0	PASS	DP=68;GPV=1;SPV=0.101;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:12,3:23,1
+chr19	50618106	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.015393;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:26,3:13,4
+chr19	50738867	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,4:6,1:16,3
+chr19	51393559	.	T	TTTTA	0	PASS	DP=99;GPV=1;SPV=0.038138;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:42,14:20,8:22,6
+chr19	52997685	.	A	G	0	PASS	DP=83;GPV=1;SPV=8.2016e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:23,21:10,9:13,12
+chr19	53470160	.	T	TCCTTCCTTCCTTCCTTCC	0	PASS	DP=57;GPV=1;SPV=0.028482;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,9:13,2:10,7
+chr19	53470177	.	C	CT	0	PASS	DP=60;GPV=1;SPV=0.0069242;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:14,5:8,10
+chr19	53821031	.	CTT	C	0	PASS	DP=38;GPV=1;SPV=0.1039;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,3:10,2:4,1
+chr19	53921585	.	GT	G	0	PASS	DP=32;GPV=1;SPV=0.19536;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:16,3:6,2:10,1
+chr19	53923820	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:7,3:4,5
+chr19	53954418	.	A	ATCTT	0	PASS	DP=88;GPV=1;SPV=0.027602;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:36,14:14,4:22,10
+chr19	54413375	.	GGTGT	G	0	PASS	DP=61;GPV=1;SPV=0.00073139;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,13:12,9:6,4
+chr19	54492716	.	C	T	0	PASS	DP=126;GPV=1;SPV=0.0087887;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:61,15:23,8:38,7
+chr19	54636053	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.014985;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:19,2:13,10
+chr19	54862802	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,7:4,5:1,2
+chr19	55319433	.	CTTTTTTT	C	0	PASS	DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,3:6,1
+chr19	55864705	.	T	C	0	PASS	DP=103;GPV=1;SPV=0.0015871;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:14,4:26,4
+chr19	55990079	.	CTTTTTTTTTTTT	C	0	PASS	DP=20;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:2,3:2,1
+chr19	56696976	.	T	TATATGTGTATAC	0	PASS	DP=63;GPV=1;SPV=0.02769;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,8:11,6:6,2
+chr19	57165803	.	C	CA	0	PASS	DP=60;GPV=1;SPV=0.02761;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,11:16,9:7,2
+chr19	57281556	.	A	AT	0	PASS	DP=54;GPV=1;SPV=0.049356;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:15,4:6,5
+chr19	57457933	.	A	AGTGTGTGTGTGT	0	PASS	DP=32;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:4,3:9,1
+chr19	58232766	.	A	T	0	PASS	DP=75;GPV=1;SPV=0.014077;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:11,6:3,3:8,3
+chr19	58390426	.	CT	C	0	PASS	DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:3,3:2,1
+chr2	913213	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.24396;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:17,2:16,2
+chr2	923366	.	A	ATT	0	PASS	DP=50;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:15,2:11,2
+chr2	1281225	.	GTTTATGTGGTGTGGT	G	0	PASS	DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:13,1:13,3
+chr2	1547975	.	A	C	0	PASS	DP=54;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:1,2:0,0:1,2
+chr2	1719834	.	TTGTG	T	0	PASS	DP=51;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:6,2:13,8
+chr2	3180664	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.040535;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:6,4:8,4
+chr2	3669728	.	C	T	0	PASS	DP=104;GPV=1;SPV=0.00016747;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:21,2:18,9
+chr2	4405526	.	C	CAA	0	PASS	DP=50;GPV=1;SPV=0.044964;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,12:17,10:3,2
+chr2	4522520	.	C	T	0	PASS	DP=82;GPV=1;SPV=5.7203e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:29,13:8,5:21,8
+chr2	5333727	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.0023465;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:22,5:20,4
+chr2	5600394	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,6:14,5:4,1
+chr2	6134131	.	A	G	0	PASS	DP=87;GPV=1;SPV=0.0042725;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:22,9:22,2
+chr2	6862573	.	T	C	0	PASS	DP=94;GPV=1;SPV=0.00044152;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:19,10:24,4
+chr2	9118194	.	TTCTC	T	0	PASS	DP=36;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:5,4:7,4
+chr2	10554207	.	C	G	0	PASS	DP=81;GPV=1;SPV=0.0082048;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:20,7:14,3
+chr2	10554273	.	G	GA	0	PASS	DP=85;GPV=1;SPV=0.014217;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:16,9:20,3
+chr2	10690415	.	C	CAA	0	PASS	DP=50;GPV=1;SPV=0.0064663;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,7:13,6:4,1
+chr2	10727051	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:0,1:17,8
+chr2	12199778	.	CAA	C	0	PASS	DP=35;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:8,6:5,3
+chr2	13280936	.	C	T	0	PASS	DP=98;GPV=1;SPV=0.0013781;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:47,12:22,4:25,8
+chr2	13484441	.	ATGTGTGTGTG	A	0	PASS	DP=58;GPV=1;SPV=0.038795;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,8:9,6:11,2
+chr2	14757402	.	A	G	0	PASS	DP=101;GPV=1;SPV=0.00053467;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:16,5:24,5
+chr2	15846446	.	G	A	0	PASS	DP=110;GPV=1;SPV=5.5211e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:22,9:22,5
+chr2	16092284	.	GT	G	0	PASS	DP=52;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,8:12,6:4,2
+chr2	16299765	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:21,4:11,3:10,1
+chr2	17707999	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:17,5:10,2:7,3
+chr2	17921915	.	G	GTA	0	PASS	DP=32;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:10,4:2,4
+chr2	18029352	.	ATTT	A	0	PASS	DP=42;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:4,4:6,2
+chr2	18296634	.	A	AGT	0	PASS	DP=155;GPV=1;SPV=0.015651;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:69,22:31,18:38,4
+chr2	18530290	.	C	CTT	0	PASS	DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:8,3:5,2
+chr2	19263268	.	G	A	0	PASS	DP=110;GPV=1;SPV=1.2759e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:46,19:25,9:21,10
+chr2	22738315	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.0036201;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:45,10:25,6:20,4
+chr2	23581828	.	C	CAAAAAA	0	PASS	DP=43;GPV=1;SPV=0.052666;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,7:15,6:6,1
+chr2	23918202	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.014414;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:17,10:3,1
+chr2	24621432	.	ATTTTTTTTT	A	0	PASS	DP=32;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:10,4:4,3
+chr2	25901727	.	A	T	0	PASS	DP=34;GPV=1;SPV=0.030792;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:7,4:6,1
+chr2	26668091	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.00061273;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:19,6:20,5
+chr2	27539702	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.10694;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:17,3:6,1:11,2
+chr2	28258632	.	G	T	0	PASS	DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,2:11,2
+chr2	28443199	.	AT	A	0	PASS	DP=52;GPV=1;SPV=0.00094846;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,15:9,9:4,6
+chr2	28939057	.	T	G	0	PASS	DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,3:14,2
+chr2	30193879	.	AT	A	0	PASS	DP=36;GPV=1;SPV=0.0041629;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:8,6:4,2
+chr2	30886989	.	T	C	0	PASS	DP=104;GPV=1;SPV=0.003441;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:19,7:26,1
+chr2	31243452	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,4:8,2:2,2
+chr2	31245545	.	ATATATATATT	A	0	PASS	DP=55;GPV=1;SPV=0.0055032;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,7:12,4:5,3
+chr2	31881495	.	TA	T	0	PASS	DP=39;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:7,5:7,3
+chr2	32030629	.	C	CAA	0	PASS	DP=83;GPV=1;SPV=0.015555;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:30,14:21,12:9,2
+chr2	32343478	.	T	TA	0	PASS	DP=38;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:6,6:7,2
+chr2	32446738	.	G	GT	0	PASS	DP=30;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,3:8,1
+chr2	33654935	.	GA	G	0	PASS	DP=73;GPV=1;SPV=0.0057212;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:19,3:13,5
+chr2	34123925	.	A	G	0	PASS	DP=83;GPV=1;SPV=0.0012005;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:25,9:14,4
+chr2	34314362	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:3,3:10,2
+chr2	35214857	.	A	AT	0	PASS	DP=94;GPV=1;SPV=0.046149;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:24,7:14,4:10,3
+chr2	35541650	.	C	G	0	PASS	DP=60;GPV=1;SPV=0.022366;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:14,9:5,2:9,7
+chr2	35610856	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.0001474;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:22,7:22,7
+chr2	37519556	.	AATATATATGT	A	0	PASS	DP=43;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:13,2:5,2
+chr2	37519805	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:14,4:12,2
+chr2	39978827	.	CTA	C	0	PASS	DP=80;GPV=1;SPV=0.05702;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:32,2:9,3
+chr2	41452723	.	CTT	C	0	PASS	DP=34;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:11,2:5,2
+chr2	42121772	.	G	GA	0	PASS	DP=41;GPV=1;SPV=0.013378;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:12,6:6,3
+chr2	42403477	.	G	GTTT	0	PASS	DP=54;GPV=1;SPV=0.10745;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:13,1:14,3
+chr2	42451204	.	C	CA	0	PASS	DP=44;GPV=1;SPV=0.032622;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,8:12,7:4,1
+chr2	42525516	.	T	C	0	PASS	DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:5,1:28,3
+chr2	42628772	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.026638;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,9:19,5:6,4
+chr2	44588374	.	G	C	0	PASS	DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:1,1:8,6
+chr2	44666612	.	C	CTTTTTTTTTTT	0	PASS	DP=39;GPV=1;SPV=0.22913;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,4:15,3:5,1
+chr2	45064398	.	G	GT	0	PASS	DP=74;GPV=1;SPV=0.0028422;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:17,6:14,8
+chr2	45716732	.	AAAGT	A	0	PASS	DP=39;GPV=1;SPV=0.14853;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,6:16,5:2,1
+chr2	45868214	.	CTT	C	0	PASS	DP=46;GPV=1;SPV=0.0013974;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,12:8,8:2,4
+chr2	46299246	.	G	GCGAAT	0	PASS	DP=121;GPV=1;SPV=0.00018801;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:58,16:28,11:30,5
+chr2	46299254	.	C	G	0	PASS	DP=122;GPV=1;SPV=0.00012803;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:57,16:27,10:30,6
+chr2	47259984	.	G	C	0	PASS	DP=84;GPV=1;SPV=0.00010638;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:34,15:17,11:17,4
+chr2	49358589	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.0014915;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:19,1:18,7
+chr2	51939045	.	G	GT	0	PASS	DP=20;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,7:1,4:1,3
+chr2	53439035	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.00029953;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:19,5:12,7
+chr2	54930953	.	C	CTT	0	PASS	DP=44;GPV=1;SPV=0.092279;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,5:13,4:7,1
+chr2	55425116	.	A	AAG	0	PASS	DP=88;GPV=1;SPV=7.7172e-05;SS=2;SSC=41;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:12,4:15,6
+chr2	57376462	.	A	G	0	PASS	DP=86;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:9,5:3,3:6,2
+chr2	57912417	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.00010821;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:42,17:20,10:22,7
+chr2	60166802	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.00071811;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:20,5:17,5
+chr2	61054725	.	ATG	A	0	PASS	DP=61;GPV=1;SPV=0.031169;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:14,6:10,4
+chr2	61623897	.	TAATAAAATAAAATAA	T	0	PASS	DP=68;GPV=1;SPV=0.016656;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:12,4:11,7
+chr2	61676192	.	GT	G	0	PASS	DP=63;GPV=1;SPV=0.03601;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:15,4:8,4
+chr2	61715319	.	C	CTT	0	PASS	DP=51;GPV=1;SPV=0.024419;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,10:9,6:8,4
+chr2	62629617	.	CTCTCCCTCTCCCCACGG	C	0	PASS	DP=48;GPV=1;SPV=0.12547;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,4:16,3:8,1
+chr2	63455439	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.052103;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:21,2:17,3
+chr2	65220216	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:9,11:4,9:5,2
+chr2	65699924	.	G	C	0	PASS	DP=103;GPV=1;SPV=0.00019326;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:45,14:27,9:18,5
+chr2	67945849	.	C	CTTT	0	PASS	DP=35;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:7,4:7,2
+chr2	69662992	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.0090729;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:8,7:4,1
+chr2	70219738	.	C	CT	0	PASS	DP=45;GPV=1;SPV=0.017733;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:16,10:1,1
+chr2	70396496	.	C	CA	0	PASS	DP=56;GPV=1;SPV=0.013912;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,10:13,9:8,1
+chr2	71161823	.	G	T	0	PASS	DP=107;GPV=1;SPV=8.8589e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:40,22:20,11:20,11
+chr2	75186371	.	C	CA	0	PASS	DP=50;GPV=1;SPV=0.043206;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,7:11,6:6,1
+chr2	76300327	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.048573;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:6,3:12,3
+chr2	77509384	.	G	T	0	PASS	DP=99;GPV=1;SPV=0.00017939;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:45,16:19,9:26,7
+chr2	78858407	.	C	A	0	PASS	DP=91;GPV=1;SPV=0.0015983;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:18,5:22,5
+chr2	79187261	.	TTTTC	T	0	PASS	DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:14,3:12,3
+chr2	79283033	.	T	G	0	PASS	DP=40;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:12,3:6,3
+chr2	79395157	.	C	T	0	PASS	DP=116;GPV=1;SPV=4.2848e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:46,14:32,7:14,7
+chr2	79851737	.	CTT	C	0	PASS	DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,1:7,3
+chr2	79982253	.	TACAC	T	0	PASS	DP=47;GPV=1;SPV=0.031354;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:4,2:11,7
+chr2	80375562	.	C	CTT	0	PASS	DP=27;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:8,4:3,1
+chr2	80932071	.	C	CATAT	0	PASS	DP=49;GPV=1;SPV=0.017571;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,9:9,4:5,5
+chr2	86902578	.	A	G	0	PASS	DP=80;GPV=1;SPV=0.00064447;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:27,23:10,10:17,13
+chr2	87116473	.	A	T	0	PASS	DP=62;GPV=1;SPV=0.015567;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:12,3:7,7
+chr2	87178306	.	T	TG	0	PASS	DP=58;GPV=1;SPV=0.028693;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,10:9,4:16,6
+chr2	87201007	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,2:5,2
+chr2	87247722	.	A	G	0	PASS	DP=111;GPV=1;SPV=0.012017;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:15,8:26,5
+chr2	87345906	.	A	T	0	PASS	DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:4,2:21,2
+chr2	87388545	.	C	G	0	PASS	DP=97;GPV=1;SPV=0.0030596;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:24,9:11,9
+chr2	87398126	.	CGCCA	C	0	PASS	DP=75;GPV=1;SPV=0.079421;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:20,4:21,1
+chr2	87420984	.	C	G	0	PASS	DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:3,2:4,2
+chr2	87706027	.	T	C	0	PASS	DP=116;GPV=1;SPV=0.043168;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:52,14:30,9:22,5
+chr2	89534524	.	G	GTGAT	0	PASS	DP=23;GPV=1;SPV=0.16149;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:10,3:1,0:9,3
+chr2	89597075	.	A	G	0	PASS	DP=121;GPV=1;SPV=2.2566e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:45,23:28,10:17,13
+chr2	89767663	.	GT	G	0	PASS	DP=92;GPV=1;SPV=0.040655;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:49,6:29,4:20,2
+chr2	89837671	.	T	A	0	PASS	DP=143;GPV=1;SPV=0.021811;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:49,14:25,7:24,7
+chr2	90247912	.	G	A	0	PASS	DP=149;GPV=1;SPV=0.0064228;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:58,19:32,12:26,7
+chr2	90249171	.	C	T	0	PASS	DP=114;GPV=1;SPV=0.048023;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:50,13:35,6:15,7
+chr2	90311614	.	T	C	0	PASS	DP=94;GPV=1;SPV=0.0018363;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:32,18:23,11:9,7
+chr2	90323215	.	C	G	0	PASS	DP=110;GPV=1;SPV=0.038293;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:49,7:15,3:34,4
+chr2	90324502	.	A	G	0	PASS	DP=24;GPV=1;SPV=0.013999;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:6,2:1,5
+chr2	90326314	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:11,4:0,0
+chr2	90350028	.	A	T	0	PASS	DP=182;GPV=1;SPV=0.0092286;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:72,19:42,11:30,8
+chr2	90401619	.	G	A	0	PASS	DP=171;GPV=1;SPV=0.019783;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:79,18:45,15:34,3
+chr2	91472627	.	C	T	0	PASS	DP=246;GPV=1;SPV=0.0025124;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:136:113,22:54,12:59,10
+chr2	91476732	.	T	C	0	PASS	DP=270;GPV=1;SPV=0.0036469;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:145:121,24:51,5:70,19
+chr2	91546596	.	A	G	0	PASS	DP=173;GPV=1;SPV=0.00060653;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:71,21:36,7:35,14
+chr2	91601565	.	C	CTTTT	0	PASS	DP=87;GPV=1;SPV=0.027931;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,10:13,5:20,5
+chr2	91711048	.	G	T	0	PASS	DP=121;GPV=1;SPV=0.0012651;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:45,13:12,7:33,6
+chr2	91711082	.	C	T	0	PASS	DP=137;GPV=1;SPV=0.048471;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:55,12:12,8:43,4
+chr2	91895156	.	G	GCT	0	PASS	DP=239;GPV=1;SPV=0.023718;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:104,14:49,10:55,4
+chr2	91911069	.	A	C	0	PASS	DP=186;GPV=1;SPV=0.0052731;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:84,10:35,8:49,2
+chr2	91932523	.	T	G	0	PASS	DP=111;GPV=1;SPV=0.018291;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:57,7:30,3:27,4
+chr2	92198813	.	G	C	0	PASS	DP=56;GPV=1;SPV=0.20884;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,4:30,4:3,0
+chr2	92204805	.	C	G	0	PASS	DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:2,0:19,4
+chr2	92208558	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.20116;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:0,0:32,4
+chr2	92218555	.	A	G	0	PASS	DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:34,4:2,0
+chr2	92295228	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:0,0:7,4
+chr2	92332611	.	G	C	0	PASS	DP=91;GPV=1;SPV=0.023569;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:54,10:28,2:26,8
+chr2	92366760	.	T	G	0	PASS	DP=276;GPV=1;SPV=0.023461;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:155:132,23:2,9:130,14
+chr2	92386741	.	T	A	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:10,3:10,1
+chr2	92392766	.	C	T	0	PASS	DP=192;GPV=1;SPV=0.0050942;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:88,25:40,15:48,10
+chr2	92418824	.	G	C	0	PASS	DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:20,4:0,0
+chr2	92485165	.	C	A	0	PASS	DP=60;GPV=1;SPV=0.12943;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,4:3,0:29,4
+chr2	92491173	.	T	G	0	PASS	DP=135;GPV=1;SPV=0.026545;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:68,9:42,6:26,3
+chr2	92511077	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.022365;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,7:9,6:19,1
+chr2	92564394	.	T	A	0	PASS	DP=244;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:137:113,20:61,5:52,15
+chr2	92674209	.	T	A	0	PASS	DP=135;GPV=1;SPV=0.044237;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:76,10:62,5:14,5
+chr2	92684703	.	T	A	0	PASS	DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:2,0:32,4
+chr2	92746667	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.026152;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:12,5:28,2
+chr2	92746668	.	C	T	0	PASS	DP=77;GPV=1;SPV=0.049115;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,6:11,5:30,1
+chr2	92763497	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.011977;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:19,11:4,1
+chr2	92828797	.	T	A	0	PASS	DP=287;GPV=1;SPV=0.0079688;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:171:153,18:1,1:152,17
+chr2	92856348	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:4,1:5,8
+chr2	92909528	.	C	A	0	PASS	DP=48;GPV=1;SPV=0.022996;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:14,1:10,8
+chr2	92956450	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:0,1:35,4
+chr2	92992587	.	T	A	0	PASS	DP=144;GPV=1;SPV=0.01794;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:75,19:35,13:40,6
+chr2	93070152	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.011208;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,7:5,1
+chr2	93077499	.	C	A	0	PASS	DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,5:5,3
+chr2	93100041	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:35,4:0,0
+chr2	93114949	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:11,3:25,1
+chr2	93164279	.	C	G	0	PASS	DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:17,1:9,3
+chr2	93215666	.	A	T	0	PASS	DP=75;GPV=1;SPV=0.043236;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:17,2:16,5
+chr2	93233897	.	C	A	0	PASS	DP=55;GPV=1;SPV=0.080194;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:8,1:23,5
+chr2	93249883	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:0,0:14,4
+chr2	93432710	.	C	T	0	PASS	DP=143;GPV=1;SPV=0.031747;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:66,12:26,7:40,5
+chr2	93459900	.	T	G	0	PASS	DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:0,3:25,1
+chr2	93551914	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,9:0,5:6,4
+chr2	93575342	.	G	T	0	PASS	DP=73;GPV=1;SPV=0.023393;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:30,7:9,1
+chr2	93596222	.	A	G	0	PASS	DP=89;GPV=1;SPV=0.025703;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:47,7:41,6:6,1
+chr2	93672880	.	C	G	0	PASS	DP=339;GPV=1;SPV=0.017673;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:212:189,23:62,12:127,11
+chr2	93683512	.	A	T	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:5,1:1,1
+chr2	93690772	.	T	A	0	PASS	DP=33;GPV=1;SPV=0.25968;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:13,1:7,3
+chr2	93864295	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.0066847;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:11,5:11,5
+chr2	93958145	.	A	G	0	PASS	DP=241;GPV=1;SPV=0.0012808;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:119,21:98,18:21,3
+chr2	94073421	.	GAA	G	0	PASS	DP=48;GPV=1;SPV=0.23474;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:27,3:18,2:9,1
+chr2	94084064	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.29538;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:20,3:14,1
+chr2	94084147	.	G	T	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,4:1,0
+chr2	94084897	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.14592;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:11,3:18,2
+chr2	94286187	.	A	G	0	PASS	DP=216;GPV=1;SPV=0.011597;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:100,27:56,12:44,15
+chr2	94287837	.	G	T	0	PASS	DP=388;GPV=1;SPV=0.0017827;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:226:198,28:75,3:123,25
+chr2	94851909	.	G	GTT	0	PASS	DP=45;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,4:16,3:3,1
+chr2	95484068	.	T	TA	0	PASS	DP=56;GPV=1;SPV=0.012518;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:12,9:11,3
+chr2	95936776	.	C	A	0	PASS	DP=229;GPV=1;SPV=0.030583;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:122:102,20:70,16:32,4
+chr2	95987605	.	CT	C	0	PASS	DP=36;GPV=1;SPV=0.0047325;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,7:5,3:6,4
+chr2	96009000	.	C	T	0	PASS	DP=95;GPV=1;SPV=6.3244e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:15,6:22,8
+chr2	96023181	.	G	A	0	PASS	DP=108;GPV=1;SPV=0.016968;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:50,6:21,4:29,2
+chr2	96462406	.	C	T	0	PASS	DP=150;GPV=1;SPV=0.015623;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:65,10:35,8:30,2
+chr2	97060632	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.0034588;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:25,5:18,4
+chr2	100014783	.	C	CTTTTTTTTTTT	0	PASS	DP=24;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,4:4,2
+chr2	102487178	.	G	GGT	0	PASS	DP=108;GPV=1;SPV=0.0025178;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:20,3:25,5
+chr2	102818770	.	C	G	0	PASS	DP=86;GPV=1;SPV=0.043302;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:46,6:26,3:20,3
+chr2	103496471	.	T	C	0	PASS	DP=94;GPV=1;SPV=3.4306e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:22,7:14,8
+chr2	103705085	.	TATATATAA	T	0	PASS	DP=45;GPV=1;SPV=0.02121;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:9,7:5,2
+chr2	105522330	.	AAG	A	0	PASS	DP=36;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,4:3,2:7,2
+chr2	106287921	.	AAAC	A	0	PASS	DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:10,1:20,4
+chr2	106394211	.	C	G	0	PASS	DP=69;GPV=1;SPV=0.015335;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:13,5:12,8
+chr2	106464556	.	C	T	0	PASS	DP=117;GPV=1;SPV=0.0044711;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:14,5:29,1
+chr2	107904796	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.003233;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,14:14,11:25,3
+chr2	109606672	.	CTTT	C	0	PASS	DP=30;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:6,3:1,2
+chr2	110175315	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.00037706;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:16,4:17,6
+chr2	111551691	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.0021846;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:2,2:6,9
+chr2	111812295	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:11,3:8,2
+chr2	113236228	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,3:7,1
+chr2	113394909	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:0,1:9,6
+chr2	113561824	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:13,3:16,1
+chr2	113594232	.	AG	A	0	PASS	DP=122;GPV=1;SPV=0.046454;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:58,7:30,2:28,5
+chr2	114026437	.	G	A	0	PASS	DP=110;GPV=1;SPV=0.000332;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:51,14:22,3:29,11
+chr2	116900074	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:12,4:9,1:3,3
+chr2	116900753	.	TC	T	0	PASS	DP=53;GPV=1;SPV=0.011003;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:10,5:11,6
+chr2	117042252	.	T	TTA	0	PASS	DP=68;GPV=1;SPV=0.042657;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:19,7:10,3
+chr2	117736666	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.00015203;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:18,6:10,6
+chr2	118030701	.	T	A	0	PASS	DP=111;GPV=1;SPV=1.0575e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:46,19:25,12:21,7
+chr2	118200387	.	T	C	0	PASS	DP=68;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:24,4:9,3:15,1
+chr2	118200397	.	TATATACAC	T	0	PASS	DP=63;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:21,5:7,3:14,2
+chr2	118563884	.	AAAAGAAAGAAAGAAAGAAAG	A	0	PASS	DP=54;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,7:8,5:4,2
+chr2	119529550	.	CAAAAAAAA	C	0	PASS	DP=36;GPV=1;SPV=0.013393;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:8,13:7,11:1,2
+chr2	121235579	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.0026133;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:7,5:9,6
+chr2	123358800	.	CTTTTTTTTTTTTTTTTTTTTTTTTTTTT	C	0	PASS	DP=17;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:2,4:2,1
+chr2	124237077	.	C	T	0	PASS	DP=108;GPV=1;SPV=0.00019654;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:46,13:22,5:24,8
+chr2	125013436	.	T	TA	0	PASS	DP=18;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:3,4:2,1
+chr2	125032097	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.0029706;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:21,2:12,6
+chr2	125894961	.	CAT	C	0	PASS	DP=30;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:5,1:4,5
+chr2	128606445	.	C	T	0	PASS	DP=77;GPV=1;SPV=0.0068293;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:17,8:20,1
+chr2	129435058	.	C	CTT	0	PASS	DP=41;GPV=1;SPV=0.017739;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:5,8:9,1
+chr2	130226771	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.029035;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:20,1:20,9
+chr2	130637244	.	T	G	0	PASS	DP=82;GPV=1;SPV=0.0082085;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:33,18:20,6:13,12
+chr2	130680549	.	T	G	0	PASS	DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:13,3:9,1
+chr2	131275700	.	C	T	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr2	132012048	.	TA	T	0	PASS	DP=229;GPV=1;SPV=0.023941;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:100,18:36,6:64,12
+chr2	132052015	.	A	C	0	PASS	DP=180;GPV=1;SPV=0.034853;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:90,13:47,3:43,10
+chr2	132723140	.	A	AT	0	PASS	DP=59;GPV=1;SPV=0.020153;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,7:14,5:7,2
+chr2	133302829	.	C	G	0	PASS	DP=107;GPV=1;SPV=1.6041e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:45,19:24,8:21,11
+chr2	133960430	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:9,2:2,2
+chr2	134465189	.	T	TAAAA	0	PASS	DP=83;GPV=1;SPV=0.077652;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:18,3:27,2
+chr2	137781367	.	G	A	0	PASS	DP=99;GPV=1;SPV=4.3552e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:34,16:19,9:15,7
+chr2	137911418	.	ATTTTTTTT	A	0	PASS	DP=57;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,11:9,8:4,3
+chr2	138984952	.	TCTTC	T	0	PASS	DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:7,2:17,2
+chr2	139200479	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.00022098;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:17,3:11,7
+chr2	139975755	.	C	A	0	PASS	DP=93;GPV=1;SPV=0.0012829;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:48,16:27,13:21,3
+chr2	140743990	.	AAGT	A	0	PASS	DP=29;GPV=1;SPV=0.00059538;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:18:1,10:1,4:0,6
+chr2	141645469	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:9,5:1,1
+chr2	141962869	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.0010228;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:20,5:19,6
+chr2	142353850	.	C	G	0	PASS	DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:5,2:5,5
+chr2	143090910	.	C	A	0	PASS	DP=98;GPV=1;SPV=0.0011295;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:15,3:27,7
+chr2	145080448	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.15966;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:17,3:8,1:9,2
+chr2	146135294	.	C	CTT	0	PASS	DP=46;GPV=1;SPV=0.0047012;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:7,9:5,2
+chr2	148411512	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:3,4:10,1
+chr2	149675021	.	A	ATCTATCTATCTATCTATCTATC	0	PASS	DP=100;GPV=1;SPV=0.04668;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:28,8:8,6:20,2
+chr2	149988264	.	T	C	0	PASS	DP=94;GPV=1;SPV=0.0083921;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,7:21,5:21,2
+chr2	150184369	.	A	AACACAC	0	PASS	DP=57;GPV=1;SPV=0.03053;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:18,8:4,3
+chr2	150304967	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.00048032;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,13:22,9:15,4
+chr2	150653021	.	C	A	0	PASS	DP=122;GPV=1;SPV=2.3536e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:41,24:17,8:24,16
+chr2	153069708	.	G	A	0	PASS	DP=109;GPV=1;SPV=8.0829e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:21,7:22,6
+chr2	153345635	.	TTTTC	T	0	PASS	DP=58;GPV=1;SPV=0.009702;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,9:1,6:15,3
+chr2	153414478	.	A	AT	0	PASS	DP=66;GPV=1;SPV=0.010719;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:21,6:8,1
+chr2	154118282	.	C	CTT	0	PASS	DP=51;GPV=1;SPV=0.032462;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,16:10,7:10,9
+chr2	154417282	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,7:12,5:4,2
+chr2	154620996	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.11785;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,6:3,2:10,4
+chr2	155613561	.	T	G	0	PASS	DP=87;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:5,8:3,5:2,3
+chr2	156462454	.	T	A	0	PASS	DP=59;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,4:5,1:13,3
+chr2	156617063	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,4:10,3:13,1
+chr2	156773425	.	T	G	0	PASS	DP=93;GPV=1;SPV=0.0066107;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:19,6:27,3
+chr2	162285325	.	G	A	0	PASS	DP=99;GPV=1;SPV=0.032385;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:28,5:23,1
+chr2	164259174	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.0013605;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:15,5:21,7
+chr2	164584147	.	AT	A	0	PASS	DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:4,3:5,1
+chr2	165520782	.	AT	A	0	PASS	DP=28;GPV=1;SPV=0.32712;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,4:9,3:1,1
+chr2	165766678	.	T	A	0	PASS	DP=46;GPV=1;SPV=0.038035;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:17,6:6,1
+chr2	165927223	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:5,2:5,2
+chr2	167683806	.	C	T	0	PASS	DP=85;GPV=1;SPV=2.1162e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,16:12,6:14,10
+chr2	169079881	.	GAA	G	0	PASS	DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:10,3:6,2
+chr2	169284256	.	C	CTCT	0	PASS	DP=26;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:2,4:5,1
+chr2	169466445	.	TATAAAC	T	0	PASS	DP=43;GPV=1;SPV=0.13115;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,5:17,1:6,4
+chr2	169591920	.	AT	A	0	PASS	DP=45;GPV=1;SPV=0.0095308;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,6:10,2:2,4
+chr2	169969548	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.0011242;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,12:10,9:3,3
+chr2	170230336	.	A	ATTTT	0	PASS	DP=44;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,9:8,4:8,5
+chr2	171496400	.	A	C	0	PASS	DP=85;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,4:16,1:8,3
+chr2	171508528	.	C	A	0	PASS	DP=109;GPV=1;SPV=4.7992e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:24,7:19,7
+chr2	172744982	.	T	C	0	PASS	DP=99;GPV=1;SPV=7.0728e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:17,9:25,7
+chr2	172857881	.	CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=32;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,4:6,3:7,1
+chr2	172911758	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:7,1:10,3
+chr2	173844256	.	C	CGTGTGT	0	PASS	DP=66;GPV=1;SPV=0.0032844;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:13,14:9,8:4,6
+chr2	174110302	.	A	AT	0	PASS	DP=45;GPV=1;SPV=0.0023112;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:9,15:5,12:4,3
+chr2	174540463	.	C	CAAA	0	PASS	DP=36;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,8:4,7:6,1
+chr2	177853678	.	ATATGTG	A	0	PASS	DP=32;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,4:1,2:7,2
+chr2	177855903	.	AACAC	A	0	PASS	DP=63;GPV=1;SPV=0.0023233;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:12,13:8,10:4,3
+chr2	179027646	.	CAAAAAAAAAAA	C	0	PASS	DP=32;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,4:4,3:9,1
+chr2	181301902	.	T	A	0	PASS	DP=85;GPV=1;SPV=0.0089356;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:20,5:23,4
+chr2	181418864	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:10,1:4,4
+chr2	183242462	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.0090729;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,8:4,3:8,5
+chr2	183265413	.	C	CAAAAAAAA	0	PASS	DP=31;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:6,5:8,1
+chr2	183283860	.	TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	T	0	PASS	DP=71;GPV=1;SPV=0.085684;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:16,3:26,3
+chr2	186406821	.	A	T	0	PASS	DP=83;GPV=1;SPV=0.045381;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:20,2:24,4
+chr2	187243808	.	T	TACACACACAC	0	PASS	DP=60;GPV=1;SPV=0.034248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,5:15,3:8,2
+chr2	189835906	.	C	CAAA	0	PASS	DP=58;GPV=1;SPV=0.015597;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,10:19,9:4,1
+chr2	191524061	.	G	GT	0	PASS	DP=31;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,4:8,2:4,2
+chr2	194519854	.	A	AT	0	PASS	DP=61;GPV=1;SPV=0.024221;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:16,4:12,2
+chr2	194623176	.	TTG	T	0	PASS	DP=98;GPV=1;SPV=0.011999;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,7:25,4:21,3
+chr2	196613582	.	T	TA	0	PASS	DP=95;GPV=1;SPV=0.00015878;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:40,14:22,9:18,5
+chr2	196626026	.	CA	C	0	PASS	DP=40;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:6,8:5,2
+chr2	197240374	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.0078195;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,13:12,11:6,2
+chr2	197695447	.	T	TA	0	PASS	DP=97;GPV=1;SPV=0.036723;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:25,2:26,4
+chr2	197853604	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:19,4:20,7
+chr2	198253112	.	G	T	0	PASS	DP=102;GPV=1;SPV=0.0064775;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:48,8:21,6:27,2
+chr2	199290797	.	G	A	0	PASS	DP=96;GPV=1;SPV=3.1445e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:39,17:26,9:13,8
+chr2	199701299	.	TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	T	0	PASS	DP=31;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,7:6,6:4,1
+chr2	203271080	.	ATATTTT	A	0	PASS	DP=27;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,6:4,4:3,2
+chr2	203512621	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.019226;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:9,7:8,2
+chr2	204362490	.	A	AGATAGATAGATAGATG	0	PASS	DP=74;GPV=1;SPV=0.0049095;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,13:11,10:8,3
+chr2	206180734	.	C	CATTATTATT	0	PASS	DP=61;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:16,13:5,7:11,6
+chr2	207820890	.	CTTT	C	0	PASS	DP=24;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:4,4:4,1
+chr2	208173120	.	CAA	C	0	PASS	DP=53;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,11:7,9:3,2
+chr2	209510211	.	G	GT	0	PASS	DP=86;GPV=1;SPV=0.0066158;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:24,6:18,3
+chr2	211317921	.	CG	C	0	PASS	DP=62;GPV=1;SPV=0.044904;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,8:15,5:7,3
+chr2	212949823	.	GTTT	G	0	PASS	DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:7,6:4,3
+chr2	214595549	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.03415;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,11:11,6:15,5
+chr2	214608659	.	T	G	0	PASS	DP=84;GPV=1;SPV=0.041404;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:18,4:16,2
+chr2	215246625	.	C	A	0	PASS	DP=56;GPV=1;SPV=0.076205;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,4:7,3:16,1
+chr2	216187470	.	G	C	0	PASS	DP=44;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:6,2:4,1:2,1
+chr2	217150072	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.00022563;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:25,8:5,3
+chr2	217229439	.	CTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,4:9,2:5,2
+chr2	217293693	.	A	G	0	PASS	DP=101;GPV=1;SPV=2.52e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:20,6:17,8
+chr2	217809576	.	GATAGGTGC	G	0	PASS	DP=61;GPV=1;SPV=0.02182;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,8:9,3:15,5
+chr2	218321623	.	CT	C	0	PASS	DP=50;GPV=1;SPV=0.0062802;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:17,7:5,3
+chr2	218588588	.	CTT	C	0	PASS	DP=27;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,6:4,1:3,5
+chr2	219159526	.	C	CAT	0	PASS	DP=47;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,4:12,2:5,2
+chr2	220791974	.	AT	A	0	PASS	DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:4,1:1,1
+chr2	220833442	.	T	TACACACAC	0	PASS	DP=64;GPV=1;SPV=0.010567;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,15:15,13:8,2
+chr2	221405710	.	T	TTTTGTTTTTTTTTTTTG	0	PASS	DP=36;GPV=1;SPV=0.013894;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,4:3,1:4,3
+chr2	221868009	.	G	A	0	PASS	DP=109;GPV=1;SPV=8.0829e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:19,7:24,6
+chr2	222323434	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.028638;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:4,9:1,4:3,5
+chr2	222816602	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.18154;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:15,3:4,1:11,2
+chr2	223321343	.	G	A	0	PASS	DP=94;GPV=1;SPV=4.8214e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:24,8:13,7
+chr2	223547202	.	A	T	0	PASS	DP=88;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:26,4:13,2:13,2
+chr2	223626106	.	G	GGAA	0	PASS	DP=64;GPV=1;SPV=0.022123;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,6:22,5:5,1
+chr2	223626112	.	G	A	0	PASS	DP=71;GPV=1;SPV=0.023915;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:18,9:11,6:7,3
+chr2	227045783	.	CAT	C	0	PASS	DP=47;GPV=1;SPV=0.052629;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,1:12,4
+chr2	227377124	.	T	A	0	PASS	DP=80;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:1,2:0,1:1,1
+chr2	227427984	.	C	CTCTTTTCTTTCTTT	0	PASS	DP=70;GPV=1;SPV=0.038786;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,5:8,2:24,3
+chr2	228055142	.	C	CAAAAAAAAAAA	0	PASS	DP=46;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:3,2:3,2:0,0
+chr2	228139910	.	T	TTTTCTTTCTTTCTTTCTTTCTTTCTTTC	0	PASS	DP=23;GPV=1;SPV=0.21504;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,3:2,2:8,1
+chr2	228393427	.	T	TATAA	0	PASS	DP=50;GPV=1;SPV=0.05461;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,4:10,2:10,2
+chr2	228403532	.	A	G	0	PASS	DP=122;GPV=1;SPV=0.0020126;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:63,12:36,6:27,6
+chr2	230222840	.	G	GT	0	PASS	DP=46;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,4:15,2:7,2
+chr2	230782817	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:16,1:12,3
+chr2	231852022	.	TC	T	0	PASS	DP=49;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,5:2,3:4,2
+chr2	232886127	.	A	G	0	PASS	DP=91;GPV=1;SPV=0.05558;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:29,5:12,2:17,3
+chr2	233253340	.	G	T	0	PASS	DP=32;GPV=1;SPV=0.0070941;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:5,5:3,5
+chr2	233258016	.	AATATCTAT	A	0	PASS	DP=87;GPV=1;SPV=0.0024809;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,15:13,3:14,12
+chr2	234561655	.	G	T	0	PASS	DP=85;GPV=1;SPV=8.9917e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:17,9:16,5
+chr2	234747587	.	AT	A	0	PASS	DP=38;GPV=1;SPV=0.0030816;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:9,14:5,8:4,6
+chr2	235090896	.	CTTCTTTCTTTCT	C	0	PASS	DP=77;GPV=1;SPV=0.033381;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,12:13,4:22,8
+chr2	236024021	.	G	GT	0	PASS	DP=59;GPV=1;SPV=0.069135;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:11,2:16,2
+chr2	238162785	.	G	A	0	PASS	DP=143;GPV=1;SPV=0.0029955;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:72,10:28,7:44,3
+chr2	239094421	.	C	A	0	PASS	DP=73;GPV=1;SPV=3.883e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:27,17:18,8:9,9
+chr2	241848563	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:1,2:7,5
+chr2	242178601	.	T	G	0	PASS	DP=188;GPV=1;SPV=0.017245;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:89,16:49,9:40,7
+chr20	227692	.	C	A	0	PASS	DP=59;GPV=1;SPV=0.052186;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:13,2:12,2
+chr20	508437	.	A	T	0	PASS	DP=82;GPV=1;SPV=6.7435e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:13,9:15,3
+chr20	1948736	.	AAAAAAG	A	0	PASS	DP=81;GPV=1;SPV=0.034215;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,6:16,3:15,3
+chr20	4103854	.	C	CAA	0	PASS	DP=66;GPV=1;SPV=0.018271;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,9:15,8:6,1
+chr20	4768812	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.12821;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:3,2:2,1:1,1
+chr20	5763290	.	C	CA	0	PASS	DP=71;GPV=1;SPV=0.0049095;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:19,13:17,11:2,2
+chr20	6530251	.	C	T	0	PASS	DP=109;GPV=1;SPV=8.189e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:48,16:24,8:24,8
+chr20	6606159	.	CTT	C	0	PASS	DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:3,1:23,4
+chr20	7810723	.	CT	C	0	PASS	DP=55;GPV=1;SPV=0.045061;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:13,4:12,1
+chr20	8031760	.	GATGTATGTGTGTATGTATGATGT	G	0	PASS	DP=64;GPV=1;SPV=0.046772;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,5:13,4:16,1
+chr20	8123251	.	A	T	0	PASS	DP=76;GPV=1;SPV=0.072687;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:21,3:23,3
+chr20	9189274	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:14,3:6,1
+chr20	9191345	.	AT	A	0	PASS	DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:13,2:5,2
+chr20	10118020	.	A	AAT	0	PASS	DP=28;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,8:6,6:1,2
+chr20	10336200	.	A	G	0	PASS	DP=64;GPV=1;SPV=0.00038475;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:16,4:7,7
+chr20	12341282	.	T	TG	0	PASS	DP=98;GPV=1;SPV=0.045641;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:20,3:21,5
+chr20	13960126	.	A	G	0	PASS	DP=95;GPV=1;SPV=1.8386e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:37,17:22,11:15,6
+chr20	14008889	.	A	G	0	PASS	DP=100;GPV=1;SPV=0.00041767;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:20,6:23,6
+chr20	15294120	.	T	TAAA	0	PASS	DP=59;GPV=1;SPV=0.011404;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,15:10,11:12,4
+chr20	18118892	.	C	CTT	0	PASS	DP=32;GPV=1;SPV=0.44608;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,4:3,2:8,2
+chr20	18464667	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:11,3:5,1
+chr20	20411129	.	C	T	0	PASS	DP=121;GPV=1;SPV=6.1367e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:55,17:28,9:27,8
+chr20	20937991	.	G	A	0	PASS	DP=91;GPV=1;SPV=0.00030699;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:28,9:14,7
+chr20	21463989	.	C	T	0	PASS	DP=108;GPV=1;SPV=0.00089328;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:20,6:19,2
+chr20	21944595	.	C	T	0	PASS	DP=98;GPV=1;SPV=0.00011575;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:23,6:20,10
+chr20	22082620	.	G	GTATATATGA	0	PASS	DP=64;GPV=1;SPV=0.12945;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:17,3:18,1
+chr20	25027351	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.00017575;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:18,5:24,7
+chr20	26514233	.	G	T	0	PASS	DP=257;GPV=1;SPV=0.019443;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:139:124,15:105,6:19,9
+chr20	26534544	.	T	A	0	PASS	DP=248;GPV=1;SPV=0.0069962;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:122,16:122,13:0,3
+chr20	27540217	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:0,0:14,4
+chr20	28518449	.	T	A	0	PASS	DP=1270;GPV=1;SPV=0.039135;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:738:660,78:195,25:465,53
+chr20	28521867	.	T	C	0	PASS	DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:23,2:8,2
+chr20	28547142	.	T	G	0	PASS	DP=547;GPV=1;SPV=0.027317;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:305:273,31:215,23:58,8
+chr20	28614307	.	TTC	T	0	PASS	DP=395;GPV=1;SPV=0.043453;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:223:198,25:112,13:86,12
+chr20	28623285	.	C	T	0	PASS	DP=318;GPV=1;SPV=0.012606;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:185:149,36:105,20:44,16
+chr20	28640875	.	C	T	0	PASS	DP=175;GPV=1;SPV=0.026665;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:99,11:54,9:45,2
+chr20	28645448	.	G	C	0	PASS	DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:10,5:5,3
+chr20	28861781	.	AC	A	0	PASS	DP=146;GPV=1;SPV=0.031078;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:70,13:42,8:28,5
+chr20	28890149	.	C	CA	0	PASS	DP=201;GPV=1;SPV=0.012413;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:96,17:29,4:67,13
+chr20	29073075	.	TA	T	0	PASS	DP=407;GPV=1;SPV=0.03738;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:207:178,29:72,4:106,25
+chr20	29073097	.	C	T	0	PASS	DP=384;GPV=1;SPV=0.048485;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:206:175,31:61,8:114,23
+chr20	29119431	.	T	C	0	PASS	DP=311;GPV=1;SPV=0.028171;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:159:140,19:63,6:77,13
+chr20	29248974	.	C	CA	0	PASS	DP=376;GPV=1;SPV=0.026235;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:256:229,27:131,17:98,10
+chr20	29321156	.	CA	C	0	PASS	DP=296;GPV=1;SPV=0.0019801;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:171:132,39:69,11:63,28
+chr20	29503185	.	A	G	0	PASS	DP=436;GPV=1;SPV=0.014857;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:248:212,36:109,11:103,25
+chr20	29504586	.	AT	A	0	PASS	DP=183;GPV=1;SPV=0.0088583;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:61,19:25,6:36,13
+chr20	29662251	.	T	C	0	PASS	DP=100;GPV=1;SPV=0.042124;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:20,6:18,1
+chr20	29738863	.	A	G	0	PASS	DP=301;GPV=1;SPV=0.043134;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:167:143,24:63,6:80,18
+chr20	29821788	.	T	C	0	PASS	DP=255;GPV=1;SPV=0.0047543;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:118,20:48,15:70,5
+chr20	29880455	.	G	A	0	PASS	DP=928;GPV=1;SPV=0.0029875;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:501:450,51:251,31:199,20
+chr20	29880516	.	G	A	0	PASS	DP=828;GPV=1;SPV=0.01893;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:438:387,51:204,35:183,16
+chr20	29897157	.	G	T	0	PASS	DP=307;GPV=1;SPV=0.046093;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:169:144,25:68,14:76,11
+chr20	30154381	.	C	A	0	PASS	DP=102;GPV=1;SPV=0.0012895;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:49,12:21,7:28,5
+chr20	30727455	.	CACACACACACGT	C	0	PASS	DP=88;GPV=1;SPV=0.024635;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,8:17,6:12,2
+chr20	30727526	.	C	T	0	PASS	DP=120;GPV=1;SPV=0.017892;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:54,11:33,8:21,3
+chr20	31054776	.	T	A	0	PASS	DP=671;GPV=1;SPV=0.033557;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:343:300,43:145,20:155,23
+chr20	31060810	.	G	C	0	PASS	DP=1686;GPV=1;SPV=0.011049;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:995:882,100:445,75:437,25
+chr20	31069228	.	T	A	0	PASS	DP=1178;GPV=1;SPV=0.001115;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:699:588,111:204,27:384,84
+chr20	31072178	.	T	TGGAAA	0	PASS	DP=1113;GPV=1;SPV=0.040867;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:663:553,70:251,41:302,29
+chr20	31171448	.	G	GAAT	0	PASS	DP=78;GPV=1;SPV=0.045288;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:15,5:26,1
+chr20	34650694	.	T	G	0	PASS	DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:12,2:18,3
+chr20	35578117	.	C	CTTT	0	PASS	DP=32;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,6:1,4:4,2
+chr20	35926362	.	C	T	0	PASS	DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:15,4:15,1
+chr20	36317223	.	TTTTC	T	0	PASS	DP=63;GPV=1;SPV=0.0045492;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,9:5,3:17,6
+chr20	37073705	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:8,10:4,4:4,6
+chr20	37480592	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,5:0,3:3,2
+chr20	37519404	.	C	CA	0	PASS	DP=58;GPV=1;SPV=0.011194;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:22,6:3,1
+chr20	38468121	.	C	T	0	PASS	DP=109;GPV=1;SPV=0.00055593;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:49,12:28,5:21,7
+chr20	38662745	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.041365;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:15,3:8,1
+chr20	39636426	.	G	A	0	PASS	DP=105;GPV=1;SPV=0.018013;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:49,6:28,4:21,2
+chr20	39700651	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.00075349;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:40,12:26,10:14,2
+chr20	40094345	.	CTTT	C	0	PASS	DP=36;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:9,3:10,1
+chr20	41555257	.	G	C	0	PASS	DP=36;GPV=1;SPV=0.027859;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:8,5:7,1
+chr20	41848464	.	AT	A	0	PASS	DP=71;GPV=1;SPV=0.0069091;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:18,6:17,4
+chr20	42363270	.	TTATATATATATATA	T	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:16,3:7,1
+chr20	42423178	.	T	TAA	0	PASS	DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:11,6:7,4
+chr20	42655416	.	G	T	0	PASS	DP=94;GPV=1;SPV=0.0011693;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:26,5:18,7
+chr20	45942278	.	C	CT	0	PASS	DP=75;GPV=1;SPV=0.055772;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:20,4:18,1
+chr20	46568401	.	CA	C	0	PASS	DP=52;GPV=1;SPV=0.011308;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:11,7:8,2
+chr20	47039835	.	C	CTTT	0	PASS	DP=32;GPV=1;SPV=0.0012546;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,13:3,11:2,2
+chr20	48515196	.	C	G	0	PASS	DP=124;GPV=1;SPV=0.0065333;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:55,7:15,4:40,3
+chr20	54481002	.	C	CT	0	PASS	DP=113;GPV=1;SPV=0.037368;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:49,11:29,4:20,7
+chr20	55587924	.	G	C	0	PASS	DP=101;GPV=1;SPV=0.00018355;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:48,18:25,4:23,14
+chr20	56114844	.	C	T	0	PASS	DP=91;GPV=1;SPV=0.00029833;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:20,4:13,6
+chr20	57350881	.	G	C	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr20	58736472	.	C	CAA	0	PASS	DP=59;GPV=1;SPV=0.14971;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,7:17,5:8,2
+chr20	59491334	.	ATTTT	A	0	PASS	DP=64;GPV=1;SPV=0.0041352;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,8:13,5:6,3
+chr20	60018702	.	CTTTTTTTTTTT	C	0	PASS	DP=25;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,2:5,3
+chr20	61126462	.	T	TA	0	PASS	DP=79;GPV=1;SPV=0.03212;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:13,7:19,5
+chr20	61329895	.	G	GTCCATCTGT	0	PASS	DP=59;GPV=1;SPV=0.0053893;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,14:2,3:18,11
+chr20	61329897	.	G	C	0	PASS	DP=53;GPV=1;SPV=0.011956;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,14:2,3:17,11
+chr20	62226743	.	G	A	0	PASS	DP=116;GPV=1;SPV=9.3901e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:47,13:23,5:24,8
+chr20	63221510	.	CGGACTGCAGGGATTGCAG	C	0	PASS	DP=133;GPV=1;SPV=0.008266;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:61,10:30,8:31,2
+chr20	63626400	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.045056;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,6:21,5:14,1
+chr20	64131416	.	A	C	0	PASS	DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:17,1:19,3
+chr21	5377310	.	G	GA	0	PASS	DP=75;GPV=1;SPV=0.019526;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:16,8:17,1
+chr21	5377321	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.0090348;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:13,10:16,2
+chr21	7234619	.	C	A	0	PASS	DP=133;GPV=1;SPV=0.019047;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:61,17:35,11:26,6
+chr21	7284211	.	G	A	0	PASS	DP=127;GPV=1;SPV=0.034032;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:62,8:33,3:29,5
+chr21	7311054	.	C	G	0	PASS	DP=118;GPV=1;SPV=0.0082281;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:56,15:17,4:39,11
+chr21	7947593	.	C	T	0	PASS	DP=324;GPV=1;SPV=0.012346;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:139,27:61,10:78,17
+chr21	7956671	.	T	G	0	PASS	DP=261;GPV=1;SPV=0.04126;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:126:111,15:52,5:59,10
+chr21	8032662	.	G	T	0	PASS	DP=148;GPV=1;SPV=0.037103;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:75,11:38,6:37,5
+chr21	8043442	.	T	C	0	PASS	DP=207;GPV=1;SPV=0.024791;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:102,25:39,10:63,15
+chr21	8530938	.	G	T	0	PASS	DP=310;GPV=1;SPV=0.049839;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:173:146,27:68,10:78,17
+chr21	8545244	.	C	T	0	PASS	DP=203;GPV=1;SPV=0.026785;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:88,16:43,6:45,10
+chr21	8549900	.	ACGCGGCTTTTTGCGCCCACCGC	A	0	PASS	DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:18,2:14,2
+chr21	8671742	.	A	C	0	PASS	DP=158;GPV=1;SPV=0.0027686;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:65,24:40,13:25,11
+chr21	8702759	.	C	CAT	0	PASS	DP=267;GPV=1;SPV=0.011216;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:144:101,25:58,9:43,16
+chr21	8763455	.	G	T	0	PASS	DP=366;GPV=1;SPV=0.0029205;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:190:157,33:86,17:71,16
+chr21	8763673	.	G	T	0	PASS	DP=363;GPV=1;SPV=0.043572;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:201:177,24:90,14:87,10
+chr21	8771691	.	T	A	0	PASS	DP=325;GPV=1;SPV=0.049824;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:172:149,23:74,17:75,6
+chr21	8778000	.	G	A	0	PASS	DP=450;GPV=1;SPV=0.032269;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:247:216,31:112,15:104,16
+chr21	8779650	.	T	A	0	PASS	DP=380;GPV=1;SPV=0.016695;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:207:176,31:91,20:85,11
+chr21	8797707	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.022054;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:4,1:26,7
+chr21	8806422	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.028409;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:8,1:16,3
+chr21	8806745	.	G	C	0	PASS	DP=201;GPV=1;SPV=0.04515;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:96,13:61,8:35,5
+chr21	8815758	.	C	T	0	PASS	DP=587;GPV=1;SPV=0.034858;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:321:276,44:96,18:180,26
+chr21	8816612	.	A	G	0	PASS	DP=292;GPV=1;SPV=0.043024;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:160:132,28:114,21:18,7
+chr21	8819382	.	C	A	0	PASS	DP=97;GPV=1;SPV=0.046688;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:24,3:17,3
+chr21	8823242	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.043789;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,3:12,2
+chr21	8825121	.	C	T	0	PASS	DP=440;GPV=1;SPV=0.047395;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:227:202,25:102,11:100,14
+chr21	8839785	.	C	T	0	PASS	DP=357;GPV=1;SPV=0.029043;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:188:168,20:114,9:54,11
+chr21	8878700	.	T	C	0	PASS	DP=841;GPV=1;SPV=0.047098;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:463:412,51:229,31:183,20
+chr21	8987900	.	A	G	0	PASS	DP=2146;GPV=1;SPV=0.0050428;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:1153:1002,143:844,72:158,71
+chr21	8993706	.	C	T	0	PASS	DP=447;GPV=1;SPV=0.04647;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:245:220,25:108,13:112,12
+chr21	9008657	.	T	C	0	PASS	DP=404;GPV=1;SPV=0.018758;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:232:207,25:85,7:122,18
+chr21	9013374	.	A	G	0	PASS	DP=350;GPV=1;SPV=0.0048849;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:183:148,35:82,23:66,12
+chr21	9013554	.	C	CT	0	PASS	DP=326;GPV=1;SPV=0.043271;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:169:141,28:78,11:63,17
+chr21	9013741	.	G	A	0	PASS	DP=367;GPV=1;SPV=0.046477;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:218:185,33:96,16:89,17
+chr21	9015952	.	A	G	0	PASS	DP=522;GPV=1;SPV=0.046044;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:282:243,39:125,20:118,19
+chr21	9020764	.	G	A	0	PASS	DP=500;GPV=1;SPV=0.012366;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:289:251,38:135,19:116,19
+chr21	9024027	.	C	A	0	PASS	DP=529;GPV=1;SPV=0.021783;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:281:249,32:132,16:117,16
+chr21	9024957	.	A	C	0	PASS	DP=476;GPV=1;SPV=0.038402;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:251:220,31:97,16:123,15
+chr21	9032118	.	G	A	0	PASS	DP=544;GPV=1;SPV=0.029411;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:286:257,29:143,20:114,9
+chr21	9033231	.	G	A	0	PASS	DP=511;GPV=1;SPV=0.0026081;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:262:229,33:118,14:111,19
+chr21	9041943	.	G	A	0	PASS	DP=341;GPV=1;SPV=0.042496;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:167:149,18:81,9:68,9
+chr21	9056372	.	A	T	0	PASS	DP=428;GPV=1;SPV=0.036967;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:203,30:131,22:72,8
+chr21	9059642	.	A	T	0	PASS	DP=388;GPV=1;SPV=0.036616;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:222:194,28:121,19:73,9
+chr21	9070128	.	G	A	0	PASS	DP=575;GPV=1;SPV=0.039435;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:285:256,29:133,23:123,6
+chr21	9102690	.	T	G	0	PASS	DP=495;GPV=1;SPV=0.038667;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:272:231,41:151,14:80,27
+chr21	9106027	.	C	T	0	PASS	DP=294;GPV=1;SPV=0.037169;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:135,21:72,12:63,9
+chr21	9110896	.	T	C	0	PASS	DP=780;GPV=1;SPV=0.011975;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:451:383,68:172,26:211,42
+chr21	9120170	.	T	C	0	PASS	DP=497;GPV=1;SPV=0.040604;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:278:245,33:123,17:122,16
+chr21	9123976	.	C	A	0	PASS	DP=852;GPV=1;SPV=0.022951;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:474:417,57:223,31:194,26
+chr21	9131132	.	C	T	0	PASS	DP=874;GPV=1;SPV=0.04638;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:456:396,60:206,28:190,32
+chr21	9150722	.	A	C	0	PASS	DP=750;GPV=1;SPV=0.032696;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:402:348,54:179,29:169,25
+chr21	9155364	.	C	T	0	PASS	DP=467;GPV=1;SPV=0.030253;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:262:231,31:168,23:63,8
+chr21	9166199	.	C	CTTTT	0	PASS	DP=272;GPV=1;SPV=0.037934;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:152:85,21:38,18:47,3
+chr21	9169532	.	T	A	0	PASS	DP=733;GPV=1;SPV=0.02235;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:418:371,47:179,16:192,31
+chr21	9172451	.	A	T	0	PASS	DP=524;GPV=1;SPV=0.038483;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:297:258,39:143,17:115,22
+chr21	9177169	.	C	T	0	PASS	DP=605;GPV=1;SPV=0.0073745;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:339:298,41:176,19:122,22
+chr21	9192936	.	G	GA	0	PASS	DP=457;GPV=1;SPV=0.038651;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:256:215,41:104,12:111,29
+chr21	9255491	.	G	A	0	PASS	DP=952;GPV=1;SPV=0.0017834;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:530:470,54:204,18:266,36
+chr21	9264019	.	T	A	0	PASS	DP=415;GPV=1;SPV=0.021377;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:221:189,32:99,24:90,8
+chr21	9265282	.	AG	A	0	PASS	DP=325;GPV=1;SPV=0.0071758;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:185:156,29:104,19:52,10
+chr21	9286058	.	T	G	0	PASS	DP=270;GPV=1;SPV=0.040609;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:153:133,20:105,12:28,8
+chr21	9292979	.	GT	G	0	PASS	DP=374;GPV=1;SPV=0.021292;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:212:176,36:44,4:132,32
+chr21	9321336	.	GT	G	0	PASS	DP=571;GPV=1;SPV=0.01829;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:308:264,44:132,23:132,21
+chr21	9334566	.	A	G	0	PASS	DP=487;GPV=1;SPV=0.0040494;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:260:211,48:106,20:105,28
+chr21	9348069	.	T	G	0	PASS	DP=669;GPV=1;SPV=0.00026859;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:363:295,68:130,28:165,40
+chr21	9362795	.	C	T	0	PASS	DP=473;GPV=1;SPV=0.00051641;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:264:225,39:123,11:102,28
+chr21	9368395	.	C	T	0	PASS	DP=1221;GPV=1;SPV=0.0091982;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:635:565,70:290,46:275,24
+chr21	9374811	.	G	T	0	PASS	DP=861;GPV=1;SPV=0.040834;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:462:402,60:179,37:223,23
+chr21	9568119	.	GATA	G	0	PASS	DP=207;GPV=1;SPV=0.021101;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:81,19:45,7:36,12
+chr21	9579930	.	G	C	0	PASS	DP=297;GPV=1;SPV=0.00087408;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:157:122,35:57,19:65,16
+chr21	9604525	.	C	CAA	0	PASS	DP=165;GPV=1;SPV=0.0084205;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:66,15:43,10:23,5
+chr21	9619052	.	C	T	0	PASS	DP=189;GPV=1;SPV=0.011468;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:78,22:54,17:24,5
+chr21	9689135	.	C	T	0	PASS	DP=237;GPV=1;SPV=0.026206;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:148:122,26:65,10:57,16
+chr21	9721868	.	C	T	0	PASS	DP=212;GPV=1;SPV=0.033766;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:96,21:57,11:39,10
+chr21	9820722	.	G	T	0	PASS	DP=588;GPV=1;SPV=0.021097;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:313:272,41:139,27:133,14
+chr21	9820972	.	G	A	0	PASS	DP=797;GPV=1;SPV=0.0025079;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:426:371,55:144,25:227,30
+chr21	9858418	.	A	C	0	PASS	DP=211;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:104,26:49,17:55,9
+chr21	9880504	.	G	A	0	PASS	DP=109;GPV=1;SPV=0.0052311;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:45,16:23,8:22,8
+chr21	9942462	.	C	A	0	PASS	DP=308;GPV=1;SPV=0.030683;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:171:145,25:67,11:78,14
+chr21	10024042	.	G	T	0	PASS	DP=155;GPV=1;SPV=0.047615;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:74,20:43,14:31,6
+chr21	10087051	.	A	G	0	PASS	DP=218;GPV=1;SPV=0.00063389;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:102,29:53,17:49,12
+chr21	10325231	.	TATATA	T	0	PASS	DP=170;GPV=1;SPV=0.046502;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:69,9:43,8:26,1
+chr21	10333904	.	C	T	0	PASS	DP=480;GPV=1;SPV=0.0018907;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:264:233,31:84,13:149,18
+chr21	10366189	.	T	C	0	PASS	DP=237;GPV=1;SPV=0.040644;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:141:119,22:54,11:65,11
+chr21	10423803	.	T	A	0	PASS	DP=544;GPV=1;SPV=0.010678;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:279:235,43:134,22:101,21
+chr21	10467542	.	A	G	0	PASS	DP=502;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:269:239,30:120,16:119,14
+chr21	10469473	.	G	A	0	PASS	DP=532;GPV=1;SPV=0.024453;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:291:247,44:120,20:127,24
+chr21	10472512	.	GAAC	G	0	PASS	DP=520;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:269:220,49:120,27:100,22
+chr21	10480244	.	T	C	0	PASS	DP=509;GPV=1;SPV=0.0024418;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:282:237,45:123,28:114,17
+chr21	10480245	.	G	A	0	PASS	DP=518;GPV=1;SPV=0.0042244;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:287:242,45:129,28:113,17
+chr21	10485910	.	C	T	0	PASS	DP=277;GPV=1;SPV=0.011841;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:162:137,25:70,13:67,12
+chr21	10679026	.	ATTCCG	A	0	PASS	DP=223;GPV=1;SPV=0.016439;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:89,20:48,12:41,8
+chr21	10785034	.	A	G	0	PASS	DP=270;GPV=1;SPV=0.0013993;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:169:139,30:56,10:83,20
+chr21	10798374	.	G	A	0	PASS	DP=581;GPV=1;SPV=0.015273;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:361:315,46:170,26:145,20
+chr21	13137513	.	G	A	0	PASS	DP=88;GPV=1;SPV=0.046561;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:43,8:9,7:34,1
+chr21	13144811	.	C	A	0	PASS	DP=124;GPV=1;SPV=0.047696;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:54,6:30,2:24,4
+chr21	13379484	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.013587;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:5,5:9,3
+chr21	13641624	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.032295;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:18,1:13,8
+chr21	13907540	.	G	A	0	PASS	DP=133;GPV=1;SPV=0.03431;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:60,9:35,6:25,3
+chr21	16854693	.	TTTC	T	0	PASS	DP=42;GPV=1;SPV=0.022726;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:7,2:8,6
+chr21	17483379	.	C	CTT	0	PASS	DP=42;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,4:7,1:8,3
+chr21	17973417	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.020011;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:11,6:5,2
+chr21	18982554	.	A	C	0	PASS	DP=94;GPV=1;SPV=0.0067604;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:44,8:26,3:18,5
+chr21	19463992	.	C	CATACATATATATATAT	0	PASS	DP=48;GPV=1;SPV=0.05384;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,5:12,4:9,1
+chr21	19628116	.	C	CAAAA	0	PASS	DP=71;GPV=1;SPV=0.068138;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,4:21,3:11,1
+chr21	22232667	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.052643;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:6,4:8,2
+chr21	23590599	.	CT	C	0	PASS	DP=41;GPV=1;SPV=0.015395;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:13,6:4,1
+chr21	23697931	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.025013;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:21,9:9,1:12,8
+chr21	24846151	.	T	G	0	PASS	DP=32;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,2:5,2:0,0
+chr21	24948990	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.0052229;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:13,4:16,4
+chr21	25615142	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:11,5:4,2:7,3
+chr21	27298891	.	G	GTTTT	0	PASS	DP=34;GPV=1;SPV=0.015718;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,7:4,5:1,2
+chr21	27347967	.	A	G	0	PASS	DP=60;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,4:15,2:15,2
+chr21	27354565	.	T	A	0	PASS	DP=97;GPV=1;SPV=0.0037211;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:26,4:19,5
+chr21	27416163	.	TG	T	0	PASS	DP=26;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:7,4:4,1
+chr21	27814389	.	CACACACACACACACACACACATACACACACACACATATAT	C	0	PASS	DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:9,3:13,3
+chr21	28617212	.	G	T	0	PASS	DP=106;GPV=1;SPV=0.0040373;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:47,8:20,5:27,3
+chr21	28877054	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:5,3:0,0
+chr21	31944841	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.0030877;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:19,5:20,3
+chr21	31947865	.	G	A	0	PASS	DP=98;GPV=1;SPV=2.1435e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:39,17:17,3:22,14
+chr21	32258875	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.0097766;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:19,2:20,6
+chr21	33443898	.	T	TG	0	PASS	DP=80;GPV=1;SPV=0.41384;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:34,4:17,2:17,2
+chr21	33577660	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:6,3:5,3
+chr21	34886880	.	T	G	0	PASS	DP=109;GPV=1;SPV=2.4883e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:37,16:20,10:17,6
+chr21	35224837	.	TAAAAA	T	0	PASS	DP=42;GPV=1;SPV=0.00060756;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,13:3,11:7,2
+chr21	36401545	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:9,2:10,2
+chr21	36679792	.	G	GA	0	PASS	DP=76;GPV=1;SPV=0.03324;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,7:26,3:10,4
+chr21	37715702	.	G	C	0	PASS	DP=119;GPV=1;SPV=3.2932e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:44,17:21,7:23,10
+chr21	38080849	.	G	T	0	PASS	DP=116;GPV=1;SPV=0.00015222;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:17,5:27,6
+chr21	38247073	.	GATGGATGGATGGATGGATGGATGGATGC	G	0	PASS	DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:15,2:18,2
+chr21	38823821	.	C	G	0	PASS	DP=88;GPV=1;SPV=0.00014004;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:10,5:23,7
+chr21	40856359	.	A	T	0	PASS	DP=92;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:22,4:9,1:13,3
+chr21	42726623	.	TA	T	0	PASS	DP=32;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,4:3,2:3,2
+chr21	43285797	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.11553;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:5,1:18,4
+chr21	43285798	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.23453;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:5,1:20,3
+chr21	45798200	.	A	G	0	PASS	DP=78;GPV=1;SPV=0.064069;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:24,2:12,2
+chr21	46011608	.	C	T	0	PASS	DP=42;GPV=1;SPV=0.034481;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:6,2:8,4
+chr21	46135606	.	C	CCCCCTCACAAATGT	0	PASS	DP=41;GPV=1;SPV=0.045809;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:8,5:8,5
+chr21	46290029	.	T	TCG	0	PASS	DP=150;GPV=1;SPV=0.0010541;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:63,17:37,6:26,11
+chr22	10689007	.	G	C	0	PASS	DP=320;GPV=1;SPV=0.0079376;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:160:133,27:55,10:78,17
+chr22	10700391	.	G	C	0	PASS	DP=523;GPV=1;SPV=0.033443;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:298:268,30:126,16:142,14
+chr22	10714537	.	G	A	0	PASS	DP=513;GPV=1;SPV=0.036131;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:283:252,31:148,18:104,13
+chr22	10733494	.	C	T	0	PASS	DP=981;GPV=1;SPV=0.043216;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:518:460,58:232,33:228,25
+chr22	10736687	.	T	C	0	PASS	DP=893;GPV=1;SPV=0.013435;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:485:424,61:222,32:202,29
+chr22	10747965	.	T	TAA	0	PASS	DP=527;GPV=1;SPV=0.0026073;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:279:240,38:123,4:117,34
+chr22	10750862	.	C	A	0	PASS	DP=456;GPV=1;SPV=0.039077;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:265:238,27:134,14:104,13
+chr22	10751852	.	G	T	0	PASS	DP=304;GPV=1;SPV=0.035037;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:171:144,27:57,20:87,7
+chr22	10769175	.	C	T	0	PASS	DP=232;GPV=1;SPV=0.023598;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:139:110,26:42,11:68,15
+chr22	10770017	.	C	T	0	PASS	DP=127;GPV=1;SPV=0.023772;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:53,11:15,2:38,9
+chr22	10859372	.	G	C	0	PASS	DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:10,4:0,0
+chr22	11037850	.	CATGGTCTATCCACCAGAAGCTCCACT	C	0	PASS	DP=409;GPV=1;SPV=0.016737;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:192,25:116,11:76,14
+chr22	11045266	.	A	G	0	PASS	DP=206;GPV=1;SPV=0.049948;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:105,12:62,3:43,9
+chr22	11450271	.	C	G	0	PASS	DP=403;GPV=1;SPV=0.048218;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:221:189,28:69,18:120,10
+chr22	11461986	.	C	T	0	PASS	DP=298;GPV=1;SPV=0.04756;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:158:132,26:86,14:46,12
+chr22	11581793	.	T	A	0	PASS	DP=242;GPV=1;SPV=0.0010021;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:141:108,33:54,17:54,16
+chr22	11681871	.	AT	A	0	PASS	DP=318;GPV=1;SPV=0.035282;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:153:129,24:61,8:68,16
+chr22	11723034	.	C	T	0	PASS	DP=327;GPV=1;SPV=0.045514;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:199:170,29:63,9:107,20
+chr22	11786618	.	A	G	0	PASS	DP=126;GPV=1;SPV=0.043844;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:58,9:24,3:34,6
+chr22	11792346	.	CTA	C	0	PASS	DP=65;GPV=1;SPV=0.00031414;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,13:15,9:5,4
+chr22	11794198	.	G	A	0	PASS	DP=362;GPV=1;SPV=0.0037187;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:197:176,21:79,10:97,11
+chr22	11863677	.	C	T	0	PASS	DP=398;GPV=1;SPV=0.0072569;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:213:187,26:103,15:84,11
+chr22	11879766	.	T	A	0	PASS	DP=976;GPV=1;SPV=0.036518;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:541:469,72:283,42:186,30
+chr22	11903218	.	ATATAT	A	0	PASS	DP=29;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,4:5,3:2,1
+chr22	11909680	.	A	T	0	PASS	DP=352;GPV=1;SPV=0.0010556;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:200:164,36:101,15:63,21
+chr22	11929057	.	C	T	0	PASS	DP=969;GPV=1;SPV=0.022939;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:522:467,55:249,31:218,24
+chr22	11930912	.	A	C	0	PASS	DP=951;GPV=1;SPV=0.044041;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:513:454,59:233,29:221,30
+chr22	11932496	.	T	C	0	PASS	DP=676;GPV=1;SPV=0.044802;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:360:319,41:130,17:189,24
+chr22	11932569	.	G	A	0	PASS	DP=625;GPV=1;SPV=0.031177;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:317:277,40:124,23:153,17
+chr22	11936610	.	G	A	0	PASS	DP=405;GPV=1;SPV=0.027745;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:229:199,30:77,7:122,23
+chr22	11937738	.	C	T	0	PASS	DP=228;GPV=1;SPV=0.0085398;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:94,26:37,4:57,22
+chr22	11942202	.	C	T	0	PASS	DP=445;GPV=1;SPV=0.039894;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:239:210,29:82,20:128,9
+chr22	11946259	.	T	C	0	PASS	DP=148;GPV=1;SPV=0.0058279;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:66,10:33,4:33,6
+chr22	11946261	.	C	T	0	PASS	DP=152;GPV=1;SPV=0.0040059;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:69,11:31,5:38,6
+chr22	11976519	.	C	T	0	PASS	DP=114;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:28,9:21,1
+chr22	11976540	.	C	T	0	PASS	DP=115;GPV=1;SPV=0.008073;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:51,13:33,11:18,2
+chr22	12033461	.	A	C	0	PASS	DP=614;GPV=1;SPV=0.029847;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:334:300,34:150,21:150,13
+chr22	12050597	.	A	T	0	PASS	DP=544;GPV=1;SPV=0.016893;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:322:285,37:127,19:158,18
+chr22	12055207	.	T	G	0	PASS	DP=357;GPV=1;SPV=0.036506;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:191:165,26:80,15:85,11
+chr22	12061675	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:0,0:10,4
+chr22	12088780	.	CTT	C	0	PASS	DP=319;GPV=1;SPV=0.022509;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:171:153,18:83,10:70,8
+chr22	12142166	.	A	T	0	PASS	DP=203;GPV=1;SPV=0.025642;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:91,13:37,6:54,7
+chr22	12152516	.	G	A	0	PASS	DP=107;GPV=1;SPV=0.045548;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:49,12:28,7:21,5
+chr22	12166049	.	G	A	0	PASS	DP=113;GPV=1;SPV=0.021333;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:32,6:11,4
+chr22	12185462	.	G	T	0	PASS	DP=462;GPV=1;SPV=0.038331;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:250:216,34:112,17:104,17
+chr22	12195493	.	A	C	0	PASS	DP=335;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:187:168,19:73,15:95,4
+chr22	12203053	.	A	C	0	PASS	DP=440;GPV=1;SPV=0.011802;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:259:214,45:139,13:75,32
+chr22	12208373	.	T	C	0	PASS	DP=263;GPV=1;SPV=0.02796;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:142:115,27:40,9:75,18
+chr22	12220167	.	T	C	0	PASS	DP=442;GPV=1;SPV=0.047508;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:207,26:121,14:86,12
+chr22	12308408	.	G	T	0	PASS	DP=105;GPV=1;SPV=0.04336;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:47,9:18,1:29,8
+chr22	12309863	.	G	T	0	PASS	DP=214;GPV=1;SPV=0.02033;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:116:103,13:61,11:42,2
+chr22	12318474	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.0012208;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,15:7,6:9,9
+chr22	12367917	.	C	T	0	PASS	DP=190;GPV=1;SPV=0.00052148;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:74,27:30,11:44,16
+chr22	12414131	.	T	G	0	PASS	DP=226;GPV=1;SPV=0.0080936;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:135:106,29:44,15:62,14
+chr22	12414141	.	T	C	0	PASS	DP=231;GPV=1;SPV=0.0039034;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:108,32:44,15:64,17
+chr22	12621815	.	A	G	0	PASS	DP=432;GPV=1;SPV=0.012537;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:242:217,25:105,18:112,7
+chr22	12622715	.	CAT	C	0	PASS	DP=269;GPV=1;SPV=0.01243;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:125,15:58,6:67,9
+chr22	12704191	.	A	C	0	PASS	DP=264;GPV=1;SPV=0.018695;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:142:114,28:48,14:66,14
+chr22	12717397	.	T	A	0	PASS	DP=417;GPV=1;SPV=0.029457;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:230:199,30:91,4:108,26
+chr22	12721141	.	G	A	0	PASS	DP=230;GPV=1;SPV=0.0064155;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:129:101,28:36,18:65,10
+chr22	12721329	.	C	T	0	PASS	DP=344;GPV=1;SPV=0.020704;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:196:163,33:104,17:59,16
+chr22	12725414	.	T	A	0	PASS	DP=200;GPV=1;SPV=0.030986;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:83,20:49,13:34,7
+chr22	12783586	.	A	G	0	PASS	DP=177;GPV=1;SPV=0.041242;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:76,15:34,5:42,10
+chr22	12807090	.	G	T	0	PASS	DP=311;GPV=1;SPV=0.006667;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:172:149,22:75,10:74,12
+chr22	12811984	.	A	C	0	PASS	DP=238;GPV=1;SPV=0.039103;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:133:117,16:54,10:63,6
+chr22	12874391	.	C	T	0	PASS	DP=232;GPV=1;SPV=0.018876;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:116,14:1,1:115,13
+chr22	12899067	.	A	AAG	0	PASS	DP=170;GPV=1;SPV=0.0096207;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:80,22:9,2:71,20
+chr22	12899086	.	C	T	0	PASS	DP=169;GPV=1;SPV=0.016357;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:79,23:10,2:69,21
+chr22	15246055	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.010276;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:18,3:10,5
+chr22	15328198	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.044843;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:46,11:26,6:20,5
+chr22	15362633	.	G	T	0	PASS	DP=86;GPV=1;SPV=0.0054483;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:30,4:11,5
+chr22	15375380	.	A	G	0	PASS	DP=106;GPV=1;SPV=0.015007;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:59,9:32,8:27,1
+chr22	15493116	.	TTTTATTTA	T	0	PASS	DP=38;GPV=1;SPV=0.01404;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:6,1:8,5
+chr22	15522715	.	A	G	0	PASS	DP=76;GPV=1;SPV=0.037221;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:21,8:13,3
+chr22	15541395	.	T	C	0	PASS	DP=216;GPV=1;SPV=0.030268;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:98,19:51,9:47,10
+chr22	15561011	.	A	G	0	PASS	DP=115;GPV=1;SPV=0.037527;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:52,15:23,2:29,13
+chr22	15646529	.	GA	G	0	PASS	DP=179;GPV=1;SPV=0.0033681;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:67,18:43,10:24,8
+chr22	15724758	.	C	T	0	PASS	DP=327;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:175:147,28:85,15:62,13
+chr22	15781692	.	C	T	0	PASS	DP=155;GPV=1;SPV=0.0032617;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:69,11:38,7:31,4
+chr22	15792412	.	C	A	0	PASS	DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:2,1:10,3
+chr22	15811856	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.031652;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:14,1:9,8
+chr22	15813627	.	A	T	0	PASS	DP=148;GPV=1;SPV=0.038366;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:72,10:49,8:23,2
+chr22	15851023	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:12,4:0,0
+chr22	15890034	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.014047;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:2,3:4,1
+chr22	15941887	.	C	G	0	PASS	DP=162;GPV=1;SPV=0.019626;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:65,18:59,17:6,1
+chr22	15941905	.	C	G	0	PASS	DP=170;GPV=1;SPV=0.014796;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:69,19:64,18:5,1
+chr22	15948114	.	T	C	0	PASS	DP=229;GPV=1;SPV=0.0090593;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:124:97,27:52,14:45,13
+chr22	16071022	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:4,2:2,5
+chr22	16149178	.	G	T	0	PASS	DP=104;GPV=1;SPV=2.8187e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:43,17:20,8:23,9
+chr22	16255232	.	C	A	0	PASS	DP=108;GPV=1;SPV=0.00049344;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:41,21:25,15:16,6
+chr22	16358075	.	C	CTGGAATGGAATGGAATGGAA	0	PASS	DP=63;GPV=1;SPV=0.023399;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:12,7:11,3
+chr22	16451280	.	C	T	0	PASS	DP=298;GPV=1;SPV=0.036095;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:148,18:101,14:47,4
+chr22	16545715	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.048152;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:21,4:12,1
+chr22	16558256	.	G	GGCCAGCCAA	0	PASS	DP=74;GPV=1;SPV=0.012849;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:29,14:14,4:15,10
+chr22	16772010	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.012694;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,14:5,12:2,2
+chr22	17710067	.	T	TAA	0	PASS	DP=54;GPV=1;SPV=0.03177;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,9:12,5:7,4
+chr22	18172991	.	G	A	0	PASS	DP=111;GPV=1;SPV=0.018829;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:41,14:18,7:23,7
+chr22	18357235	.	C	A	0	PASS	DP=188;GPV=1;SPV=0.043095;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:79,14:34,8:45,6
+chr22	18501462	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:6,6:9,2
+chr22	18551852	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.01699;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,11:10,2:16,9
+chr22	18775887	.	G	A	0	PASS	DP=141;GPV=1;SPV=0.01;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:58,8:37,1:21,7
+chr22	18856566	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.015096;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:20,1:24,5
+chr22	18864091	.	C	T	0	PASS	DP=96;GPV=1;SPV=0.014772;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:13,5:23,4
+chr22	20201442	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:2,3:0,0:2,3
+chr22	21023436	.	C	T	0	PASS	DP=109;GPV=1;SPV=0.0078472;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:21,4:23,2
+chr22	21123786	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.048804;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:18,3:15,1
+chr22	21129361	.	G	C	0	PASS	DP=225;GPV=1;SPV=0.038397;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:108,26:66,14:42,12
+chr22	21160939	.	C	CA	0	PASS	DP=89;GPV=1;SPV=0.0069435;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:27,13:22,10:5,3
+chr22	21183055	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:23,4:2,0
+chr22	21194980	.	T	C	0	PASS	DP=114;GPV=1;SPV=0.0095288;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:49,9:29,8:20,1
+chr22	21199929	.	A	T	0	PASS	DP=88;GPV=1;SPV=0.040092;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:42,8:19,2:23,6
+chr22	21256321	.	A	G	0	PASS	DP=127;GPV=1;SPV=0.020495;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:52,11:32,6:20,5
+chr22	21276374	.	G	A	0	PASS	DP=167;GPV=1;SPV=0.0032688;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:79,19:30,7:49,12
+chr22	21281758	.	C	CAA	0	PASS	DP=163;GPV=1;SPV=0.038365;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:68,16:41,11:27,5
+chr22	21282567	.	G	A	0	PASS	DP=159;GPV=1;SPV=0.037464;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:76,12:37,2:39,10
+chr22	22906108	.	G	T	0	PASS	DP=71;GPV=1;SPV=0.0089808;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:13,4:20,4
+chr22	23916807	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.017646;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:17,3:1,2
+chr22	23937746	.	A	T	0	PASS	DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:11,2:7,3
+chr22	23937765	.	G	T	0	PASS	DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:15,1:10,3
+chr22	23951323	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.047026;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:26,1:9,3
+chr22	25085783	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:24,3:1,1
+chr22	26294892	.	G	T	0	PASS	DP=75;GPV=1;SPV=0.025639;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:11,3:12,5
+chr22	26773211	.	C	A	0	PASS	DP=72;GPV=1;SPV=0.031743;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:23,9:13,2
+chr22	27506065	.	A	ATTTTTTTTTT	0	PASS	DP=28;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:4,6:5,1
+chr22	27769552	.	A	ATTTTTTTTTTTTT	0	PASS	DP=24;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:3,3:8,1
+chr22	29159129	.	T	G	0	PASS	DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:15,2:9,5
+chr22	31913686	.	CT	C	0	PASS	DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:1,4:4,1
+chr22	32213647	.	TATAC	T	0	PASS	DP=62;GPV=1;SPV=0.0342;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,7:6,4:12,3
+chr22	32409823	.	G	T	0	PASS	DP=68;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:17,4:6,2:11,2
+chr22	34423171	.	C	CT	0	PASS	DP=71;GPV=1;SPV=0.015231;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:15,9:5,4:10,5
+chr22	34440931	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.00013624;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:22,10:17,3
+chr22	34729243	.	C	T	0	PASS	DP=88;GPV=1;SPV=0.00041682;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:16,5:19,6
+chr22	35002572	.	CA	C	0	PASS	DP=40;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,10:12,8:1,2
+chr22	36074155	.	ATATATG	A	0	PASS	DP=66;GPV=1;SPV=0.087004;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,4:19,1:13,3
+chr22	37152929	.	C	CTTT	0	PASS	DP=32;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,5:4,4:6,1
+chr22	37325753	.	CTTTTTTTTTTT	C	0	PASS	DP=26;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:2,5:3,1
+chr22	38550946	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:18,2:11,2
+chr22	39057005	.	G	GTTT	0	PASS	DP=37;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,6:4,4:4,2
+chr22	39110577	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.019973;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:12,2:19,5
+chr22	40075154	.	A	ATT	0	PASS	DP=35;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:11,3:8,1
+chr22	40164779	.	GTT	G	0	PASS	DP=48;GPV=1;SPV=0.00098508;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:29:1,9:0,6:1,3
+chr22	40586903	.	GTGC	G	0	PASS	DP=80;GPV=1;SPV=0.018872;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:20,3:16,3
+chr22	41039446	.	TA	T	0	PASS	DP=63;GPV=1;SPV=0.031685;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:11,4:19,2
+chr22	41187130	.	CA	C	0	PASS	DP=42;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:11,8:4,7:7,1
+chr22	41649139	.	A	AAAAAAAATATATATATATATAT	0	PASS	DP=40;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:7,1:7,3
+chr22	41649160	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.0054797;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:10,5:12,4
+chr22	42982888	.	A	C	0	PASS	DP=35;GPV=1;SPV=0.045968;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:5,3:11,3
+chr22	43281460	.	C	CTTT	0	PASS	DP=39;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,4:8,2:6,2
+chr22	43281461	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,6:7,4:6,2
+chr22	43344508	.	G	GCA	0	PASS	DP=73;GPV=1;SPV=0.029194;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,9:18,8:4,1
+chr22	45321847	.	C	G	0	PASS	DP=92;GPV=1;SPV=0.0059888;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:47,10:29,4:18,6
+chr22	45670438	.	CTT	C	0	PASS	DP=41;GPV=1;SPV=0.047956;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:9,1:4,4
+chr22	46628577	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.042462;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:20,4:4,2
+chr22	47425042	.	A	ATCTCTCTCTCTC	0	PASS	DP=45;GPV=1;SPV=0.015968;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,8:1,3:11,5
+chr22	47822489	.	T	A	0	PASS	DP=114;GPV=1;SPV=0.00016147;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:28,2:18,10
+chr22	48414872	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.013151;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:14,6:19,6
+chr22	48493497	.	G	A	0	PASS	DP=104;GPV=1;SPV=4.2021e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:33,18:22,7:11,11
+chr22	48661949	.	T	TG	0	PASS	DP=59;GPV=1;SPV=0.115;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:20,4:14,1
+chr22	48736261	.	G	C	0	PASS	DP=39;GPV=1;SPV=0.0032318;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:8,8:3,3
+chr22	48926645	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,5:0,1:6,4
+chr22	48942477	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.038776;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:20,2:24,3
+chr22	49071003	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,4:2,1:4,3
+chr22	49981606	.	A	C	0	PASS	DP=67;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,4:18,2:6,2
+chr22	50397790	.	T	TCC	0	PASS	DP=37;GPV=1;SPV=0.027557;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:11,4:1,0
+chr3	539552	.	C	A	0	PASS	DP=119;GPV=1;SPV=2.9334e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:46,14:26,11:20,3
+chr3	594638	.	C	A	0	PASS	DP=99;GPV=1;SPV=8.3492e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:35,21:19,9:16,12
+chr3	760398	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.047242;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:12,2:13,6
+chr3	2798074	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.089726;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:37,6:18,2:19,4
+chr3	4456773	.	C	CGTGTAT	0	PASS	DP=73;GPV=1;SPV=0.026963;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,7:10,3:16,4
+chr3	4457038	.	GTATATATATATACGTGTGTGTATATATATATATATACGTGTGTGTA	G	0	PASS	DP=64;GPV=1;SPV=0.12945;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:18,3:17,1
+chr3	7928613	.	A	G	0	PASS	DP=60;GPV=1;SPV=0.011853;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,14:15,4:8,10
+chr3	7928614	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.015065;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:11,4:9,8
+chr3	9556782	.	A	G	0	PASS	DP=68;GPV=1;SPV=0.040958;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:17,7:13,5
+chr3	12095535	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:1,3:9,1
+chr3	13682097	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.0223;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:12,8:19,2
+chr3	15446818	.	C	CAAAA	0	PASS	DP=50;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:17,6:9,5:8,1
+chr3	17943713	.	C	A	0	PASS	DP=104;GPV=1;SPV=2.4942e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:22,7:18,8
+chr3	18853399	.	T	C	0	PASS	DP=96;GPV=1;SPV=4.4921e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:39,16:19,10:20,6
+chr3	21143522	.	T	TATATAA	0	PASS	DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,1:5,3
+chr3	22541399	.	C	CATATACACACATATGTGTACAT	0	PASS	DP=69;GPV=1;SPV=0.039984;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,10:14,6:12,4
+chr3	23328661	.	TC	T	0	PASS	DP=74;GPV=1;SPV=0.055024;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:28,4:12,2
+chr3	23921570	.	GT	G	0	PASS	DP=58;GPV=1;SPV=0.00098502;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,15:12,13:8,2
+chr3	23921574	.	T	G	0	PASS	DP=64;GPV=1;SPV=0.0022239;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,16:8,13:14,3
+chr3	25849097	.	C	T	0	PASS	DP=91;GPV=1;SPV=1.3678e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:20,11:15,7
+chr3	27902453	.	AT	A	0	PASS	DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:11,2:6,3
+chr3	27916234	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.048274;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:17,5:16,2
+chr3	28865466	.	CCT	C	0	PASS	DP=65;GPV=1;SPV=0.10299;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:14,1:23,4
+chr3	30172443	.	TGA	T	0	PASS	DP=83;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,4:10,2:18,2
+chr3	30509594	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.002901;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:15,2:25,8
+chr3	32938730	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.012825;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:22,10:15,2:7,8
+chr3	33113157	.	G	GA	0	PASS	DP=56;GPV=1;SPV=0.0091169;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:18,4:3,2
+chr3	34543707	.	C	G	0	PASS	DP=88;GPV=1;SPV=0.00010498;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:18,11:17,3
+chr3	34705068	.	A	ATAT	0	PASS	DP=50;GPV=1;SPV=0.022424;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:9,8:11,1
+chr3	34705070	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.014937;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:9,8:10,2
+chr3	36398591	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:8,4:5,1
+chr3	37004861	.	A	G	0	PASS	DP=99;GPV=1;SPV=0.00029634;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:18,4:21,7
+chr3	38161250	.	ATATATTTCATG	A	0	PASS	DP=114;GPV=1;SPV=0.029223;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:54,11:26,7:28,4
+chr3	38949519	.	C	A	0	PASS	DP=99;GPV=1;SPV=5.5261e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:23,5:17,10
+chr3	39169713	.	AGAAG	A	0	PASS	DP=35;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,5:5,4:2,1
+chr3	41123103	.	C	A	0	PASS	DP=101;GPV=1;SPV=7.7811e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:20,6:19,7
+chr3	42272301	.	C	T	0	PASS	DP=109;GPV=1;SPV=2.6976e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:40,18:18,9:22,9
+chr3	43016925	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.016558;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:18,3:17,4
+chr3	43580142	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.036288;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:15,2:5,2
+chr3	44405951	.	CA	C	0	PASS	DP=52;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,9:10,7:3,2
+chr3	46161710	.	A	AT	0	PASS	DP=40;GPV=1;SPV=0.090728;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,6:11,2:10,4
+chr3	49790111	.	TTCTCTCTC	T	0	PASS	DP=42;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,6:4,3:12,3
+chr3	50016829	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,4:13,3:16,1
+chr3	50946094	.	T	TA	0	PASS	DP=30;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,6:5,4:4,2
+chr3	50975454	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.024549;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:12,10:15,2
+chr3	51016122	.	G	GAT	0	PASS	DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:10,4:4,1
+chr3	51760324	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.0046387;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:18,4:11,3
+chr3	54547672	.	CT	C	0	PASS	DP=43;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:7,10:6,3:1,7
+chr3	54918336	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.020817;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,7:11,6:6,1
+chr3	55003739	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.0037149;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:42,8:19,4:23,4
+chr3	55368311	.	CCACA	C	0	PASS	DP=48;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,10:13,8:3,2
+chr3	55651038	.	T	TG	0	PASS	DP=71;GPV=1;SPV=0.0041072;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:18,11:9,2:9,9
+chr3	57959637	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.019611;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:23,3:20,3
+chr3	58386290	.	C	CTTTT	0	PASS	DP=27;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,6:3,4:3,2
+chr3	59082428	.	TATA	T	0	PASS	DP=27;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:3,2:6,4
+chr3	60058130	.	GT	G	0	PASS	DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:11,1:4,3
+chr3	60206152	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.049205;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:17,5:20,2
+chr3	60418374	.	GTGTATATA	G	0	PASS	DP=32;GPV=1;SPV=0.014569;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:1,6:1,5:0,1
+chr3	60418426	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.013387;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:1,1:7,6
+chr3	60859723	.	ATTTTTTTTTTT	A	0	PASS	DP=30;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:9,3:4,1
+chr3	60860722	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.020146;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:9,3:10,6
+chr3	62005690	.	CTTT	C	0	PASS	DP=29;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:5,6:5,2
+chr3	62750353	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:9,8:5,7:4,1
+chr3	62847576	.	A	C	0	PASS	DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,8:0,1:4,7
+chr3	62855091	.	A	ATTTTTTTTTTTTT	0	PASS	DP=32;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:6,1:5,3
+chr3	64475229	.	C	T	0	PASS	DP=99;GPV=1;SPV=3.9759e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:35,17:17,9:18,8
+chr3	65929402	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.0012029;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:25,7:19,4
+chr3	66095020	.	T	TC	0	PASS	DP=32;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,4:9,2:6,2
+chr3	67265479	.	T	A	0	PASS	DP=104;GPV=1;SPV=0.018065;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:22,1:23,7
+chr3	67838857	.	G	A	0	PASS	DP=88;GPV=1;SPV=3.0224e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:30,18:16,12:14,6
+chr3	67911386	.	T	A	0	PASS	DP=97;GPV=1;SPV=0.0044491;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:23,4:23,5
+chr3	68076855	.	C	T	0	PASS	DP=131;GPV=1;SPV=0.04767;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:32,1:18,7
+chr3	68444771	.	A	AATAT	0	PASS	DP=55;GPV=1;SPV=0.0056039;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:12,9:7,3:5,6
+chr3	68760215	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.00061221;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:18,3:17,10
+chr3	68760216	.	A	T	0	PASS	DP=83;GPV=1;SPV=0.0016391;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:39,12:22,3:17,9
+chr3	69263817	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,4:2,2:3,2
+chr3	69477359	.	A	AT	0	PASS	DP=62;GPV=1;SPV=0.0027151;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:9,3:12,12
+chr3	69560415	.	C	CTT	0	PASS	DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,2:3,2
+chr3	70154530	.	G	A	0	PASS	DP=81;GPV=1;SPV=0.00083722;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:12,5:22,6
+chr3	72045562	.	CTATAA	C	0	PASS	DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:3,5:5,1
+chr3	72857229	.	C	CA	0	PASS	DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:25,3:11,1
+chr3	73600335	.	A	ACTCT	0	PASS	DP=50;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,5:2,1:9,4
+chr3	73734013	.	C	T	0	PASS	DP=113;GPV=1;SPV=3.9089e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:42,23:18,16:24,7
+chr3	74210363	.	C	T	0	PASS	DP=90;GPV=1;SPV=1.0504e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:32,16:21,6:11,10
+chr3	75155073	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.0010228;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:22,7:17,4
+chr3	75697563	.	TG	T	0	PASS	DP=346;GPV=1;SPV=0.032276;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:177:150,27:71,15:79,12
+chr3	75880014	.	C	T	0	PASS	DP=93;GPV=1;SPV=2.017e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:34,15:20,7:14,8
+chr3	76273403	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00045564;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:20,5:16,7
+chr3	76682685	.	C	T	0	PASS	DP=111;GPV=1;SPV=2.8766e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:49,19:18,6:31,13
+chr3	76760920	.	C	CT	0	PASS	DP=68;GPV=1;SPV=0.01062;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:15,4:15,3
+chr3	78673605	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,4:4,1:4,3
+chr3	79023696	.	GTT	G	0	PASS	DP=32;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,5:13,1:2,4
+chr3	79024828	.	C	A	0	PASS	DP=110;GPV=1;SPV=2.6242e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:46,17:24,7:22,10
+chr3	84324433	.	G	T	0	PASS	DP=101;GPV=1;SPV=0.00023502;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:18,6:21,5
+chr3	85568473	.	C	CTCTTTCTTTCTTTCTTTCTT	0	PASS	DP=45;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:5,4:0,3:5,1
+chr3	86405125	.	CTTTTTTTTT	C	0	PASS	DP=33;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:7,6:3,5
+chr3	86596078	.	G	A	0	PASS	DP=113;GPV=1;SPV=0.0011685;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:63,19:32,15:31,4
+chr3	86843970	.	T	TAAA	0	PASS	DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,9:3,8:8,1
+chr3	86859807	.	A	AAT	0	PASS	DP=49;GPV=1;SPV=0.24893;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,4:11,3:13,1
+chr3	86859822	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.13783;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,5:12,4:20,1
+chr3	87794982	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:8,4:3,1
+chr3	90798808	.	C	G	0	PASS	DP=281;GPV=1;SPV=0.0046815;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:137,19:4,1:133,18
+chr3	90805489	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:1,3:6,1
+chr3	90831428	.	A	G	0	PASS	DP=126;GPV=1;SPV=0.045123;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:64,11:53,10:11,1
+chr3	90851104	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:1,0:20,4
+chr3	90886829	.	A	T	0	PASS	DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:27,3:1,1
+chr3	90903284	.	A	C	0	PASS	DP=151;GPV=1;SPV=0.0022767;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:64,8:19,7:45,1
+chr3	90903489	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:18,1:11,3
+chr3	90905544	.	G	T	0	PASS	DP=88;GPV=1;SPV=0.017926;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:9,4:25,3
+chr3	90939262	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.0027092;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:11,6:3,2
+chr3	90948816	.	T	A	0	PASS	DP=195;GPV=1;SPV=0.049765;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:90,14:39,12:51,2
+chr3	90954559	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:0,1:31,3
+chr3	90984477	.	T	A	0	PASS	DP=363;GPV=1;SPV=0.0024643;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:209:187,22:117,16:70,6
+chr3	90997507	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:0,3:17,1
+chr3	91002253	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,4:28,1:5,3
+chr3	91014694	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.053889;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:1,0:30,4
+chr3	91018076	.	G	A	0	PASS	DP=288;GPV=1;SPV=0.0016556;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:160:141,19:107,17:34,2
+chr3	91018090	.	C	A	0	PASS	DP=273;GPV=1;SPV=0.0016843;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:152:133,19:97,17:36,2
+chr3	91018462	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.10571;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:1,0:35,4
+chr3	91027672	.	C	A	0	PASS	DP=23;GPV=1;SPV=0.0074891;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:4,1:1,4
+chr3	91048782	.	C	T	0	PASS	DP=184;GPV=1;SPV=0.0011912;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:88,22:76,20:12,2
+chr3	91069464	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:17,1:0,3
+chr3	91090520	.	G	C	0	PASS	DP=147;GPV=1;SPV=0.031628;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:73,11:50,6:23,5
+chr3	91090645	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:7,3:13,3
+chr3	91149523	.	G	T	0	PASS	DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:0,3:32,1
+chr3	91152348	.	T	G	0	PASS	DP=481;GPV=1;SPV=0.005532;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:244:218,26:55,4:163,22
+chr3	91177444	.	A	T	0	PASS	DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:30,4:0,0
+chr3	91283350	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.045135;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:26,4:6,1
+chr3	91932493	.	G	A	0	PASS	DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:12,4:0,0
+chr3	92156121	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.05384;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:3,2:18,3
+chr3	95131785	.	A	T	0	PASS	DP=48;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,4:6,3:6,1
+chr3	96994759	.	A	AGAGAGC	0	PASS	DP=49;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,10:9,5:8,5
+chr3	99263623	.	C	G	0	PASS	DP=20;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:1,3:1,1:0,2
+chr3	100135438	.	ATGTG	A	0	PASS	DP=47;GPV=1;SPV=0.016961;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,9:11,5:5,4
+chr3	100956214	.	AACACACACACAC	A	0	PASS	DP=55;GPV=1;SPV=0.019569;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,7:12,6:8,1
+chr3	101616345	.	CCTTTT	C	0	PASS	DP=47;GPV=1;SPV=0.014604;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:7,7:7,2
+chr3	102517213	.	C	CAAAAA	0	PASS	DP=71;GPV=1;SPV=0.022089;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,15:16,13:12,2
+chr3	103099702	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:2,1:4,2
+chr3	103235162	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.026014;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:3,2:12,2
+chr3	103490639	.	CTTTT	C	0	PASS	DP=35;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:9,4:9,1
+chr3	103750097	.	C	T	0	PASS	DP=116;GPV=1;SPV=0.00017007;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:57,18:32,10:25,8
+chr3	104465360	.	T	C	0	PASS	DP=104;GPV=1;SPV=0.00082723;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:46,11:20,5:26,6
+chr3	105266608	.	T	A	0	PASS	DP=98;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:21,4:9,2:12,2
+chr3	105529504	.	A	T	0	PASS	DP=96;GPV=1;SPV=2.1899e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:38,17:16,7:22,10
+chr3	106707337	.	T	A	0	PASS	DP=62;GPV=1;SPV=0.10396;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,5:11,2:14,3
+chr3	108795945	.	GTTTTTTT	G	0	PASS	DP=56;GPV=1;SPV=0.0053746;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:10,10:4,9:6,1
+chr3	109321582	.	GT	G	0	PASS	DP=54;GPV=1;SPV=0.019606;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:13,8:10,4
+chr3	109527907	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:19,4:8,2:11,2
+chr3	109906974	.	GATAT	G	0	PASS	DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:12,3:3,1
+chr3	109930083	.	C	CCCTTCCCTCCTTCCCTCCTT	0	PASS	DP=42;GPV=1;SPV=0.27439;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,3:7,2:17,1
+chr3	110172450	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.00070127;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:21,7:16,5
+chr3	110648326	.	C	CT	0	PASS	DP=65;GPV=1;SPV=0.0097737;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:12,4:10,1
+chr3	112012215	.	G	C	0	PASS	DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:10,13:1,1:9,12
+chr3	112562096	.	C	A	0	PASS	DP=132;GPV=1;SPV=0.0003713;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:56,11:28,5:28,6
+chr3	115537067	.	TATAG	T	0	PASS	DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:4,2:6,3
+chr3	115776408	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.0034116;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:42,8:32,6:10,2
+chr3	116421443	.	G	A	0	PASS	DP=99;GPV=1;SPV=9.7046e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:18,6:25,10
+chr3	116664364	.	TAAC	T	0	PASS	DP=64;GPV=1;SPV=0.0083333;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:31:0,7:0,5:0,2
+chr3	117131025	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.0097133;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:44,7:20,4:24,3
+chr3	118133343	.	G	C	0	PASS	DP=73;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:25,4:12,3
+chr3	119623721	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.047696;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:5,3:10,3
+chr3	119845421	.	G	A	0	PASS	DP=103;GPV=1;SPV=2.5707e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:38,14:20,6:18,8
+chr3	120169863	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.0049041;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:26,4:20,5
+chr3	122430515	.	A	AGTGTGTGTGTGTGTGT	0	PASS	DP=37;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,4:11,3:6,1
+chr3	123724139	.	CTT	C	0	PASS	DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:10,3:3,1
+chr3	124144641	.	C	T	0	PASS	DP=77;GPV=1;SPV=0.013761;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:18,4:15,2
+chr3	124853407	.	C	T	0	PASS	DP=96;GPV=1;SPV=1.7206e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,15:17,6:18,9
+chr3	131181745	.	C	CAA	0	PASS	DP=48;GPV=1;SPV=0.0084599;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,8:5,7:8,1
+chr3	132355509	.	AT	A	0	PASS	DP=52;GPV=1;SPV=0.041513;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:12,5:5,2
+chr3	134701428	.	A	ATG	0	PASS	DP=70;GPV=1;SPV=0.099673;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:19,1:17,3
+chr3	134860174	.	C	G	0	PASS	DP=73;GPV=1;SPV=0.064086;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:16,3:22,2
+chr3	135738067	.	A	T	0	PASS	DP=72;GPV=1;SPV=0.17024;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,5:11,2:19,3
+chr3	136227187	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.017643;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:16,5:14,9
+chr3	136447596	.	ATTTT	A	0	PASS	DP=45;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,9:14,5:2,4
+chr3	136702123	.	C	G	0	PASS	DP=67;GPV=1;SPV=0.037023;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:24,8:11,3:13,5
+chr3	138397587	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.00048225;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:20,5:20,5
+chr3	138890387	.	CTCTCGCTCGCTT	C	0	PASS	DP=46;GPV=1;SPV=0.039259;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,4:2,2:14,2
+chr3	139860290	.	T	G	0	PASS	DP=102;GPV=1;SPV=5.7843e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:19,9:24,7
+chr3	139955112	.	C	CTATATATATATATA	0	PASS	DP=23;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,4:4,3:2,1
+chr3	140518474	.	G	C	0	PASS	DP=109;GPV=1;SPV=8.0627e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:17,6:20,8
+chr3	141636481	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.0095308;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:12,6:8,3:4,3
+chr3	142920596	.	G	GTGTTTT	0	PASS	DP=49;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:10,6:9,3
+chr3	143920646	.	T	TAC	0	PASS	DP=62;GPV=1;SPV=0.01326;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:16,4:9,2
+chr3	143920676	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.017377;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:13,7:6,2
+chr3	143976584	.	G	GAGAGAGAGAA	0	PASS	DP=57;GPV=1;SPV=0.030474;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,9:9,4:8,5
+chr3	144568320	.	C	CAA	0	PASS	DP=45;GPV=1;SPV=0.0094148;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,10:7,9:4,1
+chr3	145631060	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:6,2:0,1:6,1
+chr3	147818553	.	GA	G	0	PASS	DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:14,3:3,1
+chr3	147936619	.	G	A	0	PASS	DP=124;GPV=1;SPV=1.9997e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:49,15:17,10:32,5
+chr3	149417090	.	G	A	0	PASS	DP=117;GPV=1;SPV=4.8957e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:47,14:18,7:29,7
+chr3	151525002	.	CTTTTTTTTTTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,3:3,2
+chr3	152644923	.	T	TATAGAG	0	PASS	DP=62;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:2,6:2,2:0,4
+chr3	153206221	.	C	A	0	PASS	DP=83;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:28,4:17,1:11,3
+chr3	153350196	.	C	CTCTCTGTGTGTGTGTGTG	0	PASS	DP=68;GPV=1;SPV=0.0034381;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,11:9,4:9,7
+chr3	153711346	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.0035757;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:18,2:15,8
+chr3	154646137	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,4:6,3:6,1
+chr3	155140410	.	CTT	C	0	PASS	DP=44;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,8:6,2:7,6
+chr3	155237763	.	C	CTTTTTT	0	PASS	DP=26;GPV=1;SPV=0.0026248;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,10:3,8:2,2
+chr3	155928019	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,4:3,3:1,1
+chr3	157963976	.	G	A	0	PASS	DP=84;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:17,4:6,1:11,3
+chr3	159691416	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:5,4:2,3
+chr3	160674106	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.045175;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:18,3:21,2
+chr3	160771543	.	C	CTT	0	PASS	DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:14,3:4,1
+chr3	160976605	.	G	T	0	PASS	DP=91;GPV=1;SPV=7.3373e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:34,13:18,9:16,4
+chr3	161369286	.	TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC	T	0	PASS	DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:11,4:7,1
+chr3	161605235	.	T	TTTTATATATATATATATATATA	0	PASS	DP=28;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,4:3,2:3,2
+chr3	162603638	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,6:3,5:6,1
+chr3	163040250	.	TATATAG	T	0	PASS	DP=68;GPV=1;SPV=0.029248;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:17,6:14,3
+chr3	163784956	.	GT	G	0	PASS	DP=75;GPV=1;SPV=1.7096e-05;SS=2;SSC=47;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:16,17:13,12:3,5
+chr3	164011343	.	C	T	0	PASS	DP=75;GPV=1;SPV=0.09921;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:21,1:22,4
+chr3	164765099	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,3:7,1
+chr3	165488881	.	GT	G	0	PASS	DP=29;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,4:6,2:4,2
+chr3	165983125	.	C	G	0	PASS	DP=104;GPV=1;SPV=0.0045735;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:50,9:33,3:17,6
+chr3	166880502	.	AATATATATT	A	0	PASS	DP=34;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:9,3:10,1
+chr3	168568422	.	G	GTGTGTGTGTGTGTGGTGT	0	PASS	DP=91;GPV=1;SPV=9.1446e-07;SS=2;SSC=60;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:16,20:13,9:3,11
+chr3	170285078	.	C	CT	0	PASS	DP=46;GPV=1;SPV=0.0014958;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:13,19:8,17:5,2
+chr3	171562565	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:5,2:15,3
+chr3	171586739	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.035373;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:25,6:15,5
+chr3	171710872	.	C	CT	0	PASS	DP=56;GPV=1;SPV=0.036439;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,18:18,16:6,2
+chr3	172623989	.	A	G	0	PASS	DP=119;GPV=1;SPV=3.4682e-09;SS=2;SSC=84;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:40,31:23,13:17,18
+chr3	173978835	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:12,4:4,2:8,2
+chr3	175174789	.	A	G	0	PASS	DP=91;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:33,4:19,3:14,1
+chr3	175656897	.	T	A	0	PASS	DP=118;GPV=1;SPV=2.561e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:40,35:21,17:19,18
+chr3	177805499	.	T	TAAA	0	PASS	DP=49;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:8,12:2,9:6,3
+chr3	180244709	.	C	CTT	0	PASS	DP=38;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:12,2:10,2
+chr3	180592693	.	CTTTTT	C	0	PASS	DP=28;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:10,2:6,2
+chr3	181702070	.	CCA	C	0	PASS	DP=65;GPV=1;SPV=0.069705;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:22,2:12,3
+chr3	181957214	.	A	T	0	PASS	DP=107;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:27,6:15,1:12,5
+chr3	181976434	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.075059;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,6:11,5:6,1
+chr3	182665652	.	C	T	0	PASS	DP=106;GPV=1;SPV=0.0026749;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:53,11:36,2:17,9
+chr3	183167172	.	C	CTTTT	0	PASS	DP=58;GPV=1;SPV=0.028809;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,7:4,4:17,3
+chr3	183234707	.	T	TTTTTTTA	0	PASS	DP=81;GPV=1;SPV=0.013385;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:32,15:20,4:12,11
+chr3	183609768	.	TA	T	0	PASS	DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:16,1:8,3
+chr3	184617634	.	GAGA	G	0	PASS	DP=68;GPV=1;SPV=0.098102;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:21,1:20,5
+chr3	185091968	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,4:5,3:4,1
+chr3	185454379	.	GATATATGAGAT	G	0	PASS	DP=66;GPV=1;SPV=0.029627;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,13:16,2:11,11
+chr3	185454601	.	TGA	T	0	PASS	DP=74;GPV=1;SPV=0.00065651;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:14,4:12,9
+chr3	185454626	.	G	T	0	PASS	DP=70;GPV=1;SPV=0.0082759;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:13,5:14,8
+chr3	185455148	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,4:19,2:10,2
+chr3	185455151	.	G	T	0	PASS	DP=62;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,4:19,2:12,2
+chr3	185638985	.	CAA	C	0	PASS	DP=50;GPV=1;SPV=0.17119;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,8:13,6:7,2
+chr3	186786051	.	T	G	0	PASS	DP=94;GPV=1;SPV=4.2601e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:33,25:10,14:23,11
+chr3	187856602	.	G	GT	0	PASS	DP=103;GPV=1;SPV=2.4148e-05;SS=2;SSC=46;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:42,17:25,14:17,3
+chr3	188142523	.	GAAGA	G	0	PASS	DP=51;GPV=1;SPV=0.00082127;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:9,9:8,1
+chr3	188524881	.	TTCCTTCCTTCCGTCCG	T	0	PASS	DP=49;GPV=1;SPV=0.0084177;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,10:2,5:15,5
+chr3	188638313	.	AG	A	0	PASS	DP=59;GPV=1;SPV=0.014646;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:15,5:7,3
+chr3	188770347	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.020196;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,5:7,2:7,3
+chr3	189966137	.	AAG	A	0	PASS	DP=72;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:26,6:12,1
+chr3	191632973	.	C	T	0	PASS	DP=112;GPV=1;SPV=0.0011102;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:27,9:22,1
+chr3	191875373	.	CTT	C	0	PASS	DP=50;GPV=1;SPV=0.026352;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,10:9,5:11,5
+chr3	193596361	.	CTTAA	C	0	PASS	DP=51;GPV=1;SPV=0.15731;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:25,3:8,1:17,2
+chr3	195290848	.	A	T	0	PASS	DP=104;GPV=1;SPV=0.03708;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:51,17:33,15:18,2
+chr3	195482567	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.069135;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:19,2:8,2
+chr3	195487256	.	C	G	0	PASS	DP=97;GPV=1;SPV=0.038826;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:46,15:33,13:13,2
+chr3	195487534	.	G	T	0	PASS	DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:17,4:18,1
+chr3	195489437	.	T	A	0	PASS	DP=154;GPV=1;SPV=0.011845;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:82,22:34,3:48,19
+chr3	195622600	.	C	A	0	PASS	DP=104;GPV=1;SPV=0.013931;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:42,8:7,2
+chr3	195698193	.	C	T	0	PASS	DP=142;GPV=1;SPV=0.02706;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:65,15:33,9:32,6
+chr3	195719427	.	CTTT	C	0	PASS	DP=176;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:5,7:1,4:4,3
+chr3	195816817	.	T	TGCCCA	0	PASS	DP=49;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,4:8,1:16,3
+chr3	195978090	.	C	T	0	PASS	DP=275;GPV=1;SPV=0.0068093;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:135,21:71,11:64,10
+chr3	196037653	.	C	CAAAAA	0	PASS	DP=57;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,7:9,6:6,1
+chr3	196052292	.	C	CT	0	PASS	DP=39;GPV=1;SPV=0.10722;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:11,4:10,2
+chr3	196346919	.	C	CTTTTTTTTTTTT	0	PASS	DP=47;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,4:13,3:5,1
+chr3	196910335	.	CT	C	0	PASS	DP=20;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:6,3:1,1
+chr3	196949037	.	T	TC	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,1:4,3
+chr3	197459525	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,2:2,1:4,1
+chr3	197624815	.	C	T	0	PASS	DP=126;GPV=1;SPV=0.010631;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:62,11:29,3:33,8
+chr4	15464	.	G	C	0	PASS	DP=225;GPV=1;SPV=0.018837;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:89,21:62,9:27,12
+chr4	20957	.	T	C	0	PASS	DP=259;GPV=1;SPV=0.033085;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:119:100,19:72,14:28,5
+chr4	24734	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:5,3:0,0
+chr4	34973	.	A	T	0	PASS	DP=229;GPV=1;SPV=0.032843;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:121:103,18:52,11:51,7
+chr4	450958	.	T	A	0	PASS	DP=35;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:3,4:2,3:1,1
+chr4	1906654	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:7,3:3,2
+chr4	3198215	.	AT	A	0	PASS	DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:13,5:2,5
+chr4	3788247	.	C	T	0	PASS	DP=107;GPV=1;SPV=3.9178e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:40,25:25,12:15,13
+chr4	4082660	.	T	TCACACACACACACACACACACACA	0	PASS	DP=64;GPV=1;SPV=0.029276;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:9,4:14,2
+chr4	4606615	.	ATTT	A	0	PASS	DP=37;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:6,1:9,6
+chr4	7115598	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,4:18,3:9,1
+chr4	7566015	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:8,3:9,2
+chr4	8263816	.	G	C	0	PASS	DP=71;GPV=1;SPV=0.051471;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:4,3:2,2:2,1
+chr4	8630136	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:19,4:1,0
+chr4	8652924	.	C	T	0	PASS	DP=120;GPV=1;SPV=5.454e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:54,17:31,9:23,8
+chr4	8692329	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.027874;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:24,4:17,1
+chr4	9090052	.	C	CA	0	PASS	DP=53;GPV=1;SPV=0.025971;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:11,6:4,1
+chr4	9140304	.	CA	C	0	PASS	DP=39;GPV=1;SPV=0.0062652;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:3,4:4,3
+chr4	9981256	.	T	G	0	PASS	DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:1,1:6,7
+chr4	11565730	.	AC	A	0	PASS	DP=22;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,2:0,1:5,1
+chr4	12428449	.	C	CTT	0	PASS	DP=44;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,11:7,7:6,4
+chr4	14834044	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.018064;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:16,6:19,8
+chr4	15664550	.	CTT	C	0	PASS	DP=33;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:6,1:11,4
+chr4	16816407	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,11:12,9:6,2
+chr4	17035717	.	G	A	0	PASS	DP=100;GPV=1;SPV=0.00041767;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:26,5:17,7
+chr4	17154514	.	G	GTTCTTT	0	PASS	DP=56;GPV=1;SPV=0.0051634;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:18,15:10,11:8,4
+chr4	17392769	.	GA	G	0	PASS	DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:20,3:7,1
+chr4	17696172	.	T	C	0	PASS	DP=88;GPV=1;SPV=0.0005289;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:11,5:28,8
+chr4	18160746	.	CT	C	0	PASS	DP=42;GPV=1;SPV=0.022726;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:8,6:7,2
+chr4	18207818	.	T	A	0	PASS	DP=94;GPV=1;SPV=0.0011693;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:21,5:23,7
+chr4	18277327	.	C	CAA	0	PASS	DP=36;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:8,10:7,8:1,2
+chr4	19259011	.	C	A	0	PASS	DP=79;GPV=1;SPV=1.9322e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:28,16:19,11:9,5
+chr4	20211807	.	A	T	0	PASS	DP=76;GPV=1;SPV=0.044785;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:18,6:18,2
+chr4	20716612	.	C	T	0	PASS	DP=77;GPV=1;SPV=1.9388e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:13,5:11,8
+chr4	22084117	.	G	T	0	PASS	DP=98;GPV=1;SPV=0.0010978;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:22,6:24,6
+chr4	22815365	.	ATATATATATATATATATATTTTTTTTTTTTTTTT	A	0	PASS	DP=27;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,5:1,3:2,2
+chr4	23603769	.	TTG	T	0	PASS	DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:13,2:20,2
+chr4	24726335	.	C	CTT	0	PASS	DP=39;GPV=1;SPV=0.0029195;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,11:11,10:2,1
+chr4	25444486	.	G	GTT	0	PASS	DP=33;GPV=1;SPV=0.017473;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:7,2:2,2
+chr4	26316502	.	TATATATTC	T	0	PASS	DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:19,3:9,1
+chr4	27501814	.	G	T	0	PASS	DP=87;GPV=1;SPV=0.00047924;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:20,6:13,4
+chr4	27781760	.	T	A	0	PASS	DP=98;GPV=1;SPV=4.7366e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:18,8:21,7
+chr4	27837405	.	G	T	0	PASS	DP=101;GPV=1;SPV=0.00074812;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:19,8:27,4
+chr4	28397577	.	G	GT	0	PASS	DP=83;GPV=1;SPV=0.047026;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:22,1:13,3
+chr4	28725976	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.022472;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,5:16,1:18,4
+chr4	28933105	.	CAA	C	0	PASS	DP=44;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,6:7,5:5,1
+chr4	29036293	.	T	TAG	0	PASS	DP=48;GPV=1;SPV=0.030558;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:13,10:8,4
+chr4	29055438	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.0030877;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:16,5:23,3
+chr4	29514900	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.00011761;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,14:18,5:21,9
+chr4	31368449	.	C	CCTCTCTCTCT	0	PASS	DP=30;GPV=1;SPV=0.21504;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,3:3,2:7,1
+chr4	32154568	.	CTTTTT	C	0	PASS	DP=38;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,9:9,8:2,1
+chr4	32793744	.	C	CAAAA	0	PASS	DP=59;GPV=1;SPV=0.048633;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,9:14,8:8,1
+chr4	32856257	.	CTTT	C	0	PASS	DP=80;GPV=1;SPV=0.037745;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:37,5:20,3:17,2
+chr4	32862019	.	ATTTT	A	0	PASS	DP=67;GPV=1;SPV=0.034373;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,4:13,2:11,2
+chr4	35953472	.	A	C	0	PASS	DP=55;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:7,2:4,1:3,1
+chr4	36713372	.	C	CTT	0	PASS	DP=56;GPV=1;SPV=0.026985;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:12,8:6,1
+chr4	37348581	.	CTTTT	C	0	PASS	DP=32;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,8:1,6:5,2
+chr4	37774975	.	G	C	0	PASS	DP=111;GPV=1;SPV=0.011371;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:53,7:30,4:23,3
+chr4	37777168	.	T	G	0	PASS	DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:11,2:17,2
+chr4	39297302	.	G	T	0	PASS	DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:12,3:12,1
+chr4	39793488	.	TCCTTTC	T	0	PASS	DP=72;GPV=1;SPV=0.036334;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:19,2:20,5
+chr4	39793511	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.0028438;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:20,5:16,7
+chr4	40045853	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,9:10,8:5,1
+chr4	40405377	.	G	A	0	PASS	DP=101;GPV=1;SPV=7.4138e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:42,15:18,6:24,9
+chr4	43384910	.	T	A	0	PASS	DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:10,3:4,3
+chr4	44282396	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.0007003;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:25,4:13,7
+chr4	46348939	.	A	T	0	PASS	DP=81;GPV=1;SPV=0.011661;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:32,6:10,3
+chr4	47195456	.	T	TAGA	0	PASS	DP=61;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:36:0,2:0,1:0,1
+chr4	48092553	.	TGGACACATTTTTCCAAAAGTGTGACTTACAAGAGCAATGTGTAAAGGGAGAAAGAGTTAGGGCAGCA	T	0	PASS	DP=58;GPV=1;SPV=0.064593;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:12,2:14,2
+chr4	49102880	.	A	ATTCCT	0	PASS	DP=106;GPV=1;SPV=0.021398;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:50,6:24,2:26,4
+chr4	49117668	.	ACCATT	A	0	PASS	DP=122;GPV=1;SPV=0.048559;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:48,6:27,2:21,4
+chr4	49161694	.	C	T	0	PASS	DP=278;GPV=1;SPV=0.018289;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:146:122,24:53,13:69,11
+chr4	49173848	.	G	A	0	PASS	DP=131;GPV=1;SPV=0.0098093;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:71,9:41,1:30,8
+chr4	49235503	.	T	C	0	PASS	DP=181;GPV=1;SPV=0.049851;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:77,18:43,13:34,5
+chr4	49237120	.	G	C	0	PASS	DP=212;GPV=1;SPV=0.024925;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:83,20:33,8:50,12
+chr4	49237791	.	CACTTAAA	C	0	PASS	DP=109;GPV=1;SPV=0.037423;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:48,9:27,2:21,7
+chr4	49246131	.	C	A	0	PASS	DP=402;GPV=1;SPV=0.0056713;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:229:201,28:145,19:56,9
+chr4	49249561	.	C	T	0	PASS	DP=366;GPV=1;SPV=0.032859;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:200:168,32:94,23:74,9
+chr4	49252795	.	C	T	0	PASS	DP=577;GPV=1;SPV=0.04704;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:292:260,32:152,21:108,11
+chr4	49256477	.	T	A	0	PASS	DP=426;GPV=1;SPV=0.0033633;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:178,37:91,25:87,12
+chr4	49257937	.	T	A	0	PASS	DP=413;GPV=1;SPV=0.023553;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:221:192,29:86,15:106,14
+chr4	49264667	.	GTGTT	G	0	PASS	DP=614;GPV=1;SPV=0.0099073;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:342:243,46:159,17:84,29
+chr4	49266327	.	AT	A	0	PASS	DP=712;GPV=1;SPV=0.0051943;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:406:349,54:165,15:184,39
+chr4	49292267	.	G	A	0	PASS	DP=264;GPV=1;SPV=0.0096171;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:145:124,19:69,6:55,13
+chr4	49498308	.	T	C	0	PASS	DP=108;GPV=1;SPV=0.045686;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:46,6:19,1:27,5
+chr4	49519369	.	C	T	0	PASS	DP=191;GPV=1;SPV=0.028218;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:94,13:54,8:40,5
+chr4	49519466	.	TA	T	0	PASS	DP=155;GPV=1;SPV=0.035166;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:65,17:42,9:23,8
+chr4	49554189	.	C	CA	0	PASS	DP=241;GPV=1;SPV=0.0068684;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:118,16:58,7:60,9
+chr4	49556231	.	G	T	0	PASS	DP=116;GPV=1;SPV=0.029547;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:49,11:30,8:19,3
+chr4	49558512	.	T	C	0	PASS	DP=124;GPV=1;SPV=0.012898;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:53,20:26,9:27,11
+chr4	49579191	.	C	T	0	PASS	DP=230;GPV=1;SPV=0.034495;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:108,22:27,7:81,15
+chr4	49591746	.	G	A	0	PASS	DP=303;GPV=1;SPV=0.0043003;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:172:140,32:94,21:46,11
+chr4	49591755	.	G	C	0	PASS	DP=317;GPV=1;SPV=0.009297;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:182:146,36:100,23:46,13
+chr4	49610504	.	A	G	0	PASS	DP=94;GPV=1;SPV=0.014844;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:49,8:17,2:32,6
+chr4	49636085	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:7,9:11,1
+chr4	49647349	.	G	A	0	PASS	DP=169;GPV=1;SPV=0.044924;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:77,9:48,8:29,1
+chr4	49788517	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:8,4:7,1
+chr4	49893276	.	C	A	0	PASS	DP=645;GPV=1;SPV=0.011987;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:362:311,51:144,24:167,27
+chr4	50045157	.	T	G	0	PASS	DP=73;GPV=1;SPV=0.022376;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:30,3:4,7
+chr4	50531544	.	C	A	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr4	50752559	.	T	C	0	PASS	DP=131;GPV=1;SPV=0.045908;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:57,10:57,3:0,7
+chr4	51099347	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr4	51567766	.	C	G	0	PASS	DP=65;GPV=1;SPV=0.016282;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:22,4:6,2
+chr4	51717602	.	G	C	0	PASS	DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,2:7,2
+chr4	52424285	.	G	GAAA	0	PASS	DP=59;GPV=1;SPV=0.036581;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,11:14,9:8,2
+chr4	54622537	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,4:10,2:25,2
+chr4	55117039	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.0077737;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,7:21,3:21,4
+chr4	55344846	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,7:5,6:4,1
+chr4	55542385	.	T	A	0	PASS	DP=56;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:26:0,6:0,1:0,5
+chr4	55761622	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.026414;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,6:19,3:16,3
+chr4	56619681	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.01722;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:27,4:23,4
+chr4	56651878	.	G	GTGTGTT	0	PASS	DP=66;GPV=1;SPV=0.17898;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,5:11,3:25,2
+chr4	56901844	.	GT	G	0	PASS	DP=62;GPV=1;SPV=0.0063671;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,12:11,9:7,3
+chr4	57103659	.	TC	T	0	PASS	DP=41;GPV=1;SPV=0.022451;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:9,5:8,1
+chr4	57429325	.	T	TC	0	PASS	DP=26;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,4:5,3:6,1
+chr4	58216382	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0057881;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:18,4:25,5
+chr4	58877410	.	CTATA	C	0	PASS	DP=74;GPV=1;SPV=0.05753;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:26,5:20,4
+chr4	59158894	.	A	G	0	PASS	DP=95;GPV=1;SPV=3.3036e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:22,4:13,10
+chr4	60170060	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:7,8:6,1
+chr4	60338297	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:3,1:3,3
+chr4	61930175	.	CA	C	0	PASS	DP=80;GPV=1;SPV=5.5762e-05;SS=2;SSC=42;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:31,16:23,12:8,4
+chr4	62079954	.	C	CA	0	PASS	DP=57;GPV=1;SPV=0.042605;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,9:17,8:4,1
+chr4	63417628	.	T	TACAC	0	PASS	DP=47;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,7:9,5:5,2
+chr4	63422490	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.00095274;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:19,4:16,7
+chr4	63509573	.	G	A	0	PASS	DP=100;GPV=1;SPV=8.9306e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:18,7:21,6
+chr4	63535392	.	C	G	0	PASS	DP=52;GPV=1;SPV=0.038888;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:10,3:12,5
+chr4	63535460	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.037131;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:10,5:7,2
+chr4	64653798	.	A	AAAAAAAAAAAAAAGAAAGAAAAGAAAAGAAAAG	0	PASS	DP=53;GPV=1;SPV=0.041838;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:11,2:12,3
+chr4	65334585	.	C	A	0	PASS	DP=118;GPV=1;SPV=0.00025319;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:50,12:26,5:24,7
+chr4	66317249	.	A	G	0	PASS	DP=92;GPV=1;SPV=0.00034554;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:41,14:18,8:23,6
+chr4	66681806	.	G	A	0	PASS	DP=114;GPV=1;SPV=2.344e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:51,20:21,13:30,7
+chr4	67342257	.	C	CAAAA	0	PASS	DP=40;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,8:5,7:3,1
+chr4	67540341	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.0037102;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:21,6:20,2
+chr4	68714842	.	C	A	0	PASS	DP=72;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:20,4:10,2:10,2
+chr4	68977991	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.050238;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:17,3:24,2
+chr4	69335373	.	GTA	G	0	PASS	DP=56;GPV=1;SPV=0.062133;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:15,3:13,2
+chr4	69472099	.	TACAAAA	T	0	PASS	DP=88;GPV=1;SPV=0.0063865;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:30,17:16,7:14,10
+chr4	73349484	.	TA	T	0	PASS	DP=92;GPV=1;SPV=0.028888;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,4:20,2:14,2
+chr4	74561269	.	A	AAT	0	PASS	DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:7,5:4,3
+chr4	75665626	.	AAC	A	0	PASS	DP=66;GPV=1;SPV=0.023939;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:18,3:15,4
+chr4	76167671	.	CT	C	0	PASS	DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:0,0:14,4
+chr4	76889847	.	CA	C	0	PASS	DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:10,7:6,1
+chr4	76917675	.	G	A	0	PASS	DP=126;GPV=1;SPV=0.044051;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:57,9:47,8:10,1
+chr4	76918224	.	C	T	0	PASS	DP=197;GPV=1;SPV=0.0047068;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:81,22:57,14:24,8
+chr4	80750416	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.0017641;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:14,5:18,3
+chr4	82248742	.	CGT	C	0	PASS	DP=53;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,8:7,6:6,2
+chr4	84242410	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.0030266;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:46,11:25,5:21,6
+chr4	86799825	.	CTTTT	C	0	PASS	DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:5,1:2,3
+chr4	87113590	.	T	G	0	PASS	DP=91;GPV=1;SPV=0.0007893;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:15,5:24,6
+chr4	87746818	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.034759;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:12,4:14,6
+chr4	88098645	.	G	GAGATAGAT	0	PASS	DP=70;GPV=1;SPV=0.018938;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,11:13,6:9,5
+chr4	88887530	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:8,4:3,2
+chr4	90865779	.	C	A	0	PASS	DP=96;GPV=1;SPV=0.0019678;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:38,8:21,5:17,3
+chr4	92149762	.	G	A	0	PASS	DP=75;GPV=1;SPV=0.0001398;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:17,6:12,8
+chr4	93244513	.	C	CTATTATA	0	PASS	DP=43;GPV=1;SPV=0.020413;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:10,4:9,3
+chr4	93612825	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.037023;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:16,7:8,1
+chr4	96513383	.	G	A	0	PASS	DP=115;GPV=1;SPV=1.6916e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:45,21:32,9:13,12
+chr4	100104827	.	A	ATATGTATATATG	0	PASS	DP=82;GPV=1;SPV=0.094058;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,4:18,2:18,2
+chr4	100226787	.	GTT	G	0	PASS	DP=37;GPV=1;SPV=0.027005;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,10:8,9:5,1
+chr4	101470541	.	CAT	C	0	PASS	DP=79;GPV=1;SPV=0.041296;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,4:18,3:14,1
+chr4	101470555	.	T	C	0	PASS	DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:16,3:15,1
+chr4	102798279	.	A	AATATATATATATAT	0	PASS	DP=61;GPV=1;SPV=0.017962;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,11:12,8:10,3
+chr4	102926038	.	A	C	0	PASS	DP=117;GPV=1;SPV=0.042888;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:56,10:38,5:18,5
+chr4	103732723	.	C	CCGTATATATGCA	0	PASS	DP=78;GPV=1;SPV=0.0072137;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:25,13:19,7:6,6
+chr4	104220900	.	A	C	0	PASS	DP=65;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,4:6,3:12,1
+chr4	105284064	.	ACGTG	A	0	PASS	DP=39;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,5:9,3:11,2
+chr4	105914373	.	C	A	0	PASS	DP=37;GPV=1;SPV=0.00034907;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:3,6:7,6
+chr4	107719187	.	G	GTTTTTT	0	PASS	DP=73;GPV=1;SPV=0.0024737;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,16:17,13:6,3
+chr4	109753059	.	TATA	T	0	PASS	DP=72;GPV=1;SPV=0.0136;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,6:14,2:16,4
+chr4	109753065	.	A	T	0	PASS	DP=77;GPV=1;SPV=0.036679;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:13,2:17,4
+chr4	113804741	.	A	T	0	PASS	DP=94;GPV=1;SPV=7.1737e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:13,8:22,10
+chr4	115118961	.	G	A	0	PASS	DP=88;GPV=1;SPV=0.016274;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:14,8:23,7
+chr4	117192020	.	ATG	A	0	PASS	DP=42;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,10:9,9:4,1
+chr4	118501329	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.017739;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:9,8:5,1
+chr4	118810137	.	T	G	0	PASS	DP=58;GPV=1;SPV=0.016929;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,9:4,2:9,7
+chr4	118876667	.	CTCTTTCTTTCTTTCTTTCTTTCTT	C	0	PASS	DP=51;GPV=1;SPV=0.012898;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,11:0,2:14,9
+chr4	119418794	.	G	T	0	PASS	DP=26;GPV=1;SPV=0.014047;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:6,4:0,0
+chr4	119479109	.	T	TGATTACCTCTGTAAAATCA	0	PASS	DP=81;GPV=1;SPV=0.023273;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,10:6,5:22,5
+chr4	119531060	.	C	A	0	PASS	DP=88;GPV=1;SPV=0.00432;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:26,4:17,6
+chr4	119576953	.	A	T	0	PASS	DP=87;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:26,4:13,1:13,3
+chr4	119734507	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:27,6:12,5
+chr4	121405687	.	A	ATAT	0	PASS	DP=34;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:11,2:4,2
+chr4	124026110	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.019772;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:11,6:10,3
+chr4	125814698	.	G	GGA	0	PASS	DP=59;GPV=1;SPV=0.0095885;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,16:11,12:12,4
+chr4	128662542	.	C	CT	0	PASS	DP=62;GPV=1;SPV=0.047358;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,9:16,5:8,4
+chr4	128807055	.	C	G	0	PASS	DP=95;GPV=1;SPV=5.3794e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:42,20:21,7:21,13
+chr4	129956700	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.00010382;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:39,12:21,6:18,6
+chr4	130350139	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:0,0:25,4
+chr4	131278724	.	C	CT	0	PASS	DP=101;GPV=1;SPV=0.024074;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:22,1:22,4
+chr4	132783622	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.00029292;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:22,7:16,4
+chr4	132999967	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.0042441;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:17,7:27,5
+chr4	133456730	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.0031698;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:9,3:23,6
+chr4	135272246	.	GT	G	0	PASS	DP=50;GPV=1;SPV=0.0012088;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,16:5,13:8,3
+chr4	136925000	.	G	T	0	PASS	DP=108;GPV=1;SPV=0.00040855;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:22,5:20,5
+chr4	139092416	.	C	A	0	PASS	DP=81;GPV=1;SPV=0.036354;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:23,4:14,4
+chr4	139092417	.	A	C	0	PASS	DP=71;GPV=1;SPV=0.026881;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:24,4:12,3
+chr4	139092418	.	T	A	0	PASS	DP=76;GPV=1;SPV=0.006996;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:34,8:21,4:13,4
+chr4	139989902	.	A	G	0	PASS	DP=65;GPV=1;SPV=0.060769;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:11,3:22,2
+chr4	140800462	.	A	ATATT	0	PASS	DP=45;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,4:17,2:5,2
+chr4	141580080	.	TTC	T	0	PASS	DP=78;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:24,4:9,3:15,1
+chr4	143948795	.	C	T	0	PASS	DP=127;GPV=1;SPV=0.00029442;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:60,14:27,8:33,6
+chr4	144292744	.	C	A	0	PASS	DP=117;GPV=1;SPV=0.024171;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:63,7:30,5:33,2
+chr4	144562388	.	G	A	0	PASS	DP=109;GPV=1;SPV=9.7059e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:41,16:16,6:25,10
+chr4	146542376	.	CT	C	0	PASS	DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,4:5,2
+chr4	148324367	.	T	G	0	PASS	DP=87;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:22,5:14,3:8,2
+chr4	148492842	.	AGTATCCTCTATACATAGTATTTTATATATATC	A	0	PASS	DP=22;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:1,2:1,2:0,0
+chr4	149102144	.	CTT	C	0	PASS	DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:11,3:6,2
+chr4	150380982	.	CAA	C	0	PASS	DP=35;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:9,7:2,1
+chr4	150647352	.	CT	C	0	PASS	DP=20;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,4:1,3:0,1
+chr4	150780633	.	A	ATATATATACGTGTATATATATACATATATATACACG	0	PASS	DP=68;GPV=1;SPV=0.055746;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,4:8,3:16,1
+chr4	150970557	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.065277;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,6:8,3:6,3
+chr4	151008397	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.0015215;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:14,4:19,5
+chr4	151222669	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,2:10,3
+chr4	152701645	.	A	G	0	PASS	DP=91;GPV=1;SPV=0.00040756;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:41,14:23,7:18,7
+chr4	153399890	.	ATT	A	0	PASS	DP=29;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:10,3:4,2
+chr4	153566329	.	G	T	0	PASS	DP=99;GPV=1;SPV=1.6594e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:13,8:18,4
+chr4	154176775	.	C	CT	0	PASS	DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:11,3:13,2
+chr4	154385557	.	G	A	0	PASS	DP=91;GPV=1;SPV=3.8419e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,19:7,12:21,7
+chr4	154433395	.	C	CCTTTTTT	0	PASS	DP=20;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:0,0:5,4
+chr4	154751761	.	A	AAG	0	PASS	DP=27;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,4:3,2:3,2
+chr4	157599693	.	C	G	0	PASS	DP=97;GPV=1;SPV=0.0021288;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:23,4:19,5
+chr4	158255594	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:18,3:15,3
+chr4	158492068	.	T	TTTTC	0	PASS	DP=67;GPV=1;SPV=0.0066451;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:19,14:10,6:9,8
+chr4	160555509	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.00024258;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:42,14:25,8:17,6
+chr4	161887403	.	CT	C	0	PASS	DP=76;GPV=1;SPV=0.067189;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:30,6:15,4:15,2
+chr4	162657480	.	ATATAGTATAGAC	A	0	PASS	DP=65;GPV=1;SPV=0.0077271;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,6:7,5:16,1
+chr4	164864400	.	A	AGAG	0	PASS	DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:7,6:4,1
+chr4	164892111	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.00013794;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,14:13,9:26,5
+chr4	165235571	.	A	G	0	PASS	DP=105;GPV=1;SPV=0.016048;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:48,6:23,3:25,3
+chr4	166473672	.	A	C	0	PASS	DP=95;GPV=1;SPV=0.00048809;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:17,6:24,6
+chr4	167327273	.	C	CAA	0	PASS	DP=45;GPV=1;SPV=0.0074763;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,8:8,7:2,1
+chr4	169103086	.	ATT	A	0	PASS	DP=51;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,9:8,7:8,2
+chr4	172552837	.	T	TAAAAAAAA	0	PASS	DP=22;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,4:1,3:2,1
+chr4	176418256	.	C	CT	0	PASS	DP=68;GPV=1;SPV=0.001413;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:24,23:10,10:14,13
+chr4	176809676	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.0012733;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:20,5:15,6
+chr4	177205827	.	CA	C	0	PASS	DP=66;GPV=1;SPV=0.016636;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:10,3:23,5
+chr4	177511398	.	AT	A	0	PASS	DP=101;GPV=1;SPV=0.0010149;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:23,7:20,3
+chr4	177919881	.	A	AT	0	PASS	DP=55;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,10:13,6:7,4
+chr4	178098024	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.043916;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:30,2:19,8
+chr4	180436765	.	C	CAA	0	PASS	DP=60;GPV=1;SPV=0.036153;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:14,9:13,2
+chr4	181411099	.	A	AG	0	PASS	DP=59;GPV=1;SPV=0.0062613;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:10,5:15,3
+chr4	181825425	.	A	C	0	PASS	DP=41;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,7:4,3:6,4
+chr4	181844536	.	C	T	0	PASS	DP=100;GPV=1;SPV=0.00013137;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:42,14:20,6:22,8
+chr4	182049097	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.02185;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:48,9:23,3:25,6
+chr4	184308769	.	C	CAAAAAAA	0	PASS	DP=42;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,7:5,5:3,2
+chr4	184607094	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.00075514;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:16,2:16,6
+chr4	184928147	.	CAAAAAAAA	C	0	PASS	DP=51;GPV=1;SPV=0.034441;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,8:6,6:8,2
+chr4	185443342	.	A	ATATATATTTTTT	0	PASS	DP=24;GPV=1;SPV=0.27198;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,4:7,1:1,3
+chr4	186478194	.	T	G	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:4,1:3,1
+chr4	186970880	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,4:5,5
+chr4	186981764	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,4:12,2:16,2
+chr4	187078357	.	T	TTGTGTGTGTGTGTGTGTGTGTG	0	PASS	DP=60;GPV=1;SPV=0.047407;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:10,9:15,1
+chr4	187298453	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.0011232;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:15,3:19,8
+chr4	187639769	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:7,3:3,2
+chr4	187943519	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.0066158;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:17,4:25,5
+chr4	188443382	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.084679;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:9,4:10,1
+chr4	188698800	.	G	A	0	PASS	DP=107;GPV=1;SPV=1.959e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,13:20,6:17,7
+chr4	188974431	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.14474;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:8,3:2,2:6,1
+chr4	189205947	.	T	A	0	PASS	DP=71;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,5:11,2:12,3
+chr4	189447454	.	A	C	0	PASS	DP=85;GPV=1;SPV=0.0086439;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,6:18,4:15,2
+chr4	189447455	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.032947;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,5:18,3:25,2
+chr4	189685393	.	A	C	0	PASS	DP=59;GPV=1;SPV=0.019428;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:19,11:13,9:6,2
+chr4	189757141	.	G	GT	0	PASS	DP=64;GPV=1;SPV=0.015407;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,13:10,3:15,10
+chr4	190050837	.	C	T	0	PASS	DP=293;GPV=1;SPV=0.049845;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:159:138,21:65,14:73,7
+chr4	190116123	.	T	C	0	PASS	DP=303;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:159:117,18:58,9:59,9
+chr5	100875	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.16035;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:23,3:13,2:10,1
+chr5	502907	.	C	T	0	PASS	DP=151;GPV=1;SPV=0.025674;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:79,13:35,11:44,2
+chr5	649065	.	TG	T	0	PASS	DP=56;GPV=1;SPV=0.062133;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:18,3:10,2
+chr5	649720	.	CCG	C	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:6,2:2,2
+chr5	682627	.	C	G	0	PASS	DP=113;GPV=1;SPV=0.020165;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:59,7:32,2:27,5
+chr5	700911	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.027715;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:15,3:11,4
+chr5	700916	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:16,3:11,3
+chr5	714493	.	AT	A	0	PASS	DP=93;GPV=1;SPV=0.031765;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:6,3:30,7
+chr5	847849	.	T	G	0	PASS	DP=124;GPV=1;SPV=0.041895;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:58,7:23,2:35,5
+chr5	1238415	.	G	GA	0	PASS	DP=90;GPV=1;SPV=0.035178;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:39,5:18,1:21,4
+chr5	2580850	.	CCTTCCTTTCTTT	C	0	PASS	DP=55;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:8,5:2,1:6,4
+chr5	2594305	.	TGCACAGAGATACACACAGACACACAGAGATACACAGGCACAGACAGAC	T	0	PASS	DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:22,3:13,1
+chr5	4040418	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,5:8,1:9,4
+chr5	4506713	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.014858;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:47,7:20,2:27,5
+chr5	4559105	.	A	G	0	PASS	DP=94;GPV=1;SPV=0.01722;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:25,5:25,3
+chr5	5816146	.	GAT	G	0	PASS	DP=39;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,6:2,1:16,5
+chr5	6260056	.	A	T	0	PASS	DP=94;GPV=1;SPV=0.00057272;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:17,5:20,5
+chr5	6313801	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.011847;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:13,6:7,4
+chr5	6995984	.	C	T	0	PASS	DP=97;GPV=1;SPV=1.2479e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:37,17:15,10:22,7
+chr5	7288807	.	TTCTTCTTC	T	0	PASS	DP=63;GPV=1;SPV=0.016301;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:12,3:15,3
+chr5	7776193	.	T	TA	0	PASS	DP=68;GPV=1;SPV=0.0051328;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:16,16:7,14:9,2
+chr5	8454942	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.03854;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:18,2:16,8
+chr5	9021991	.	C	T	0	PASS	DP=100;GPV=1;SPV=4.3022e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:41,16:16,7:25,9
+chr5	9674709	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.00043374;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:22,7:12,3
+chr5	9766290	.	T	C	0	PASS	DP=105;GPV=1;SPV=1.3389e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:35,17:21,6:14,11
+chr5	9954291	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.0032629;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:22,5:12,2
+chr5	10285688	.	C	CTCTCTCTT	0	PASS	DP=73;GPV=1;SPV=0.03878;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,11:14,6:13,5
+chr5	10352719	.	T	G	0	PASS	DP=107;GPV=1;SPV=0.00039347;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:50,14:20,8:30,6
+chr5	10864421	.	AT	A	0	PASS	DP=41;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:5,3:9,5
+chr5	11228353	.	C	CA	0	PASS	DP=37;GPV=1;SPV=0.036457;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,7:10,5:6,2
+chr5	12099554	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.0059953;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,8:16,3:12,5
+chr5	13029343	.	A	AGGG	0	PASS	DP=23;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,5:5,3:0,2
+chr5	13149494	.	CAGATAGAT	C	0	PASS	DP=73;GPV=1;SPV=0.011623;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:35,17:18,8:17,9
+chr5	15033020	.	CT	C	0	PASS	DP=42;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:16,5:6,1
+chr5	15265506	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.068062;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:20,1:22,4
+chr5	15379417	.	G	A	0	PASS	DP=75;GPV=1;SPV=0.00076695;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:13,5:16,5
+chr5	16142884	.	CTT	C	0	PASS	DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:7,5:1,1
+chr5	16232857	.	A	T	0	PASS	DP=83;GPV=1;SPV=0.0021309;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:40,12:26,7:14,5
+chr5	17217075	.	A	T	0	PASS	DP=69;GPV=1;SPV=0.060567;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:8,1:23,3
+chr5	17343355	.	A	AAATAATAAT	0	PASS	DP=70;GPV=1;SPV=0.0042467;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:16,13:8,8:8,5
+chr5	17595177	.	G	A	0	PASS	DP=156;GPV=1;SPV=0.040357;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:65,11:65,7:0,4
+chr5	18369049	.	A	ATGG	0	PASS	DP=80;GPV=1;SPV=0.024981;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,4:13,1:5,3
+chr5	18780674	.	AT	A	0	PASS	DP=25;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,8:1,4:5,4
+chr5	19382635	.	T	TTGTGTGTG	0	PASS	DP=56;GPV=1;SPV=0.020403;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,10:13,4:8,6
+chr5	20095323	.	G	A	0	PASS	DP=37;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,2:4,1:1,1
+chr5	21970839	.	CAAAA	C	0	PASS	DP=18;GPV=1;SPV=0.0082418;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:2,4:0,0
+chr5	22466525	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.022062;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:15,3:17,2
+chr5	25382046	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.011784;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:13,7:17,4
+chr5	26121258	.	A	G	0	PASS	DP=98;GPV=1;SPV=0.0016467;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:46,11:24,3:22,8
+chr5	26803072	.	A	G	0	PASS	DP=114;GPV=1;SPV=0.00058548;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:54,13:30,8:24,5
+chr5	27949409	.	CTT	C	0	PASS	DP=25;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:3,3:5,1
+chr5	29877631	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.06407;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:12,4:11,1
+chr5	29947445	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.000239;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:18,7:19,7
+chr5	30771958	.	G	A	0	PASS	DP=109;GPV=1;SPV=5.3599e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:43,19:29,12:14,7
+chr5	33178032	.	CCA	C	0	PASS	DP=69;GPV=1;SPV=0.00021757;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,19:8,3:10,16
+chr5	33881564	.	C	CT	0	PASS	DP=74;GPV=1;SPV=0.023403;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:21,2:10,3
+chr5	33911832	.	T	C	0	PASS	DP=93;GPV=1;SPV=0.00064041;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:18,8:23,4
+chr5	34665043	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:6,2:10,2
+chr5	35880888	.	A	G	0	PASS	DP=112;GPV=1;SPV=0.00011099;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:52,17:34,9:18,8
+chr5	39028201	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:7,3:20,1
+chr5	39371299	.	G	A	0	PASS	DP=121;GPV=1;SPV=1.7232e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:47,15:29,7:18,8
+chr5	40294210	.	C	A	0	PASS	DP=99;GPV=1;SPV=2.9026e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:38,15:21,9:17,6
+chr5	40546086	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.0065197;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:11,2:16,11
+chr5	41426844	.	A	AT	0	PASS	DP=109;GPV=1;SPV=1.7371e-06;SS=2;SSC=57;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:36,16:19,10:17,6
+chr5	42917957	.	C	T	0	PASS	DP=103;GPV=1;SPV=0.00047993;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:20,4:23,7
+chr5	43645657	.	C	A	0	PASS	DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:5,1:6,8
+chr5	44748860	.	G	T	0	PASS	DP=66;GPV=1;SPV=0.035343;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:16,5:6,1:10,4
+chr5	45807187	.	ATGTG	A	0	PASS	DP=39;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,5:11,3:2,2
+chr5	46663683	.	A	C	0	PASS	DP=44;GPV=1;SPV=0.017166;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:7,2:12,5
+chr5	46665462	.	C	A	0	PASS	DP=82;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:1,1:34,12
+chr5	46665464	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.0093922;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:1,1:31,13
+chr5	46756249	.	G	C	0	PASS	DP=30;GPV=1;SPV=0.013393;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:6,4:2,4
+chr5	46783409	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.011463;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:54,11:16,2:38,9
+chr5	47112438	.	C	G	0	PASS	DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:7,3:22,3
+chr5	47112440	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.071601;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:8,3:23,3
+chr5	47116274	.	C	A	0	PASS	DP=50;GPV=1;SPV=0.28678;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:4,2:29,2
+chr5	47116995	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.10478;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:29,4:7,2
+chr5	47297581	.	G	A	0	PASS	DP=260;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:147:127,20:78,9:49,11
+chr5	50141951	.	C	A	0	PASS	DP=190;GPV=1;SPV=0.025998;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:87,16:21,8:66,8
+chr5	50145036	.	T	G	0	PASS	DP=460;GPV=1;SPV=0.020017;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:248:221,27:69,8:152,19
+chr5	50628618	.	T	A	0	PASS	DP=98;GPV=1;SPV=0.0033793;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:31,5:14,4
+chr5	50655431	.	C	CTT	0	PASS	DP=58;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,7:3,1:11,6
+chr5	51500712	.	C	CCTCT	0	PASS	DP=32;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,5:6,4:4,1
+chr5	51567438	.	G	GTA	0	PASS	DP=45;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,8:11,4:7,4
+chr5	51609127	.	C	CAA	0	PASS	DP=41;GPV=1;SPV=0.020314;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:12,7:6,1
+chr5	51879386	.	CAA	C	0	PASS	DP=35;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,4:11,3:7,1
+chr5	52103502	.	G	GATTTT	0	PASS	DP=89;GPV=1;SPV=0.00077065;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,19:12,8:16,11
+chr5	54798863	.	A	AAGAC	0	PASS	DP=37;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:6,5:2,3:4,2
+chr5	58817454	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.0095669;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:19,5:21,3
+chr5	60668159	.	T	TTTTA	0	PASS	DP=47;GPV=1;SPV=0.0098611;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,10:5,5:7,5
+chr5	60874986	.	G	T	0	PASS	DP=108;GPV=1;SPV=1.3278e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:44,18:28,10:16,8
+chr5	61638540	.	T	C	0	PASS	DP=95;GPV=1;SPV=1.2598e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:36,17:15,10:21,7
+chr5	62238968	.	A	AT	0	PASS	DP=94;GPV=1;SPV=0.028602;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:43,8:24,7:19,1
+chr5	62238999	.	T	TG	0	PASS	DP=99;GPV=1;SPV=0.039663;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:48,8:28,7:20,1
+chr5	64463583	.	G	T	0	PASS	DP=95;GPV=1;SPV=0.019795;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:20,5:23,7
+chr5	65007626	.	CTTT	C	0	PASS	DP=47;GPV=1;SPV=0.0045748;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:8,12:6,7:2,5
+chr5	66389037	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.0040054;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:40,9:20,4:20,5
+chr5	66522574	.	T	A	0	PASS	DP=102;GPV=1;SPV=0.0047446;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,8:15,6:31,2
+chr5	67398893	.	A	ATTATTTATTTATTTATTTAT	0	PASS	DP=79;GPV=1;SPV=0.031786;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,8:8,4:20,4
+chr5	67508890	.	G	GTATATA	0	PASS	DP=34;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:7,3:5,1
+chr5	68217627	.	G	GGTGTGTGT	0	PASS	DP=72;GPV=1;SPV=0.028582;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,17:20,14:13,3
+chr5	73682418	.	C	CT	0	PASS	DP=78;GPV=1;SPV=0.011394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:20,13:15,5
+chr5	76829263	.	CTT	C	0	PASS	DP=80;GPV=1;SPV=0.20253;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:22,4:14,2:8,2
+chr5	77443876	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:9,4:4,3
+chr5	79567406	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.062905;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:12,9:11,1
+chr5	80066094	.	CA	C	0	PASS	DP=54;GPV=1;SPV=0.048297;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:11,5:7,2
+chr5	80338707	.	T	G	0	PASS	DP=98;GPV=1;SPV=0.0090267;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:48,8:18,7:30,1
+chr5	80600615	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,5:8,2:9,3
+chr5	80612791	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,5:11,4:3,1
+chr5	80617029	.	CTATATATATA	C	0	PASS	DP=47;GPV=1;SPV=0.11013;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,4:17,2:5,2
+chr5	80762778	.	T	TTTTTA	0	PASS	DP=95;GPV=1;SPV=0.029694;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,11:16,7:21,4
+chr5	82050839	.	CA	C	0	PASS	DP=39;GPV=1;SPV=0.038556;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,4:5,2
+chr5	82472884	.	ATATAT	A	0	PASS	DP=88;GPV=1;SPV=0.042665;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:37,9:3,1
+chr5	82505422	.	C	A	0	PASS	DP=107;GPV=1;SPV=0.027702;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:54,6:26,2:28,4
+chr5	84238665	.	G	GTTTTTT	0	PASS	DP=28;GPV=1;SPV=0.0074891;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,5:1,4:4,1
+chr5	84359577	.	C	T	0	PASS	DP=109;GPV=1;SPV=8.5136e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:23,7:18,5
+chr5	85392531	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.010345;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:25,4:16,4
+chr5	85392541	.	C	T	0	PASS	DP=88;GPV=1;SPV=0.015734;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:43,7:24,3:19,4
+chr5	85392546	.	CA	C	0	PASS	DP=92;GPV=1;SPV=0.043084;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:25,3:20,2
+chr5	85420733	.	A	C	0	PASS	DP=73;GPV=1;SPV=0.031527;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:40,8:17,4:23,4
+chr5	85420734	.	TTA	T	0	PASS	DP=78;GPV=1;SPV=0.022898;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:42,8:17,4:25,4
+chr5	86218528	.	A	T	0	PASS	DP=98;GPV=1;SPV=3.9621e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:20,11:17,3
+chr5	89121849	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.031077;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:13,3:10,2
+chr5	89480700	.	T	A	0	PASS	DP=74;GPV=1;SPV=5.7039e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:13,8:11,4
+chr5	91035846	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:8,2:3,2
+chr5	91150009	.	CTTT	C	0	PASS	DP=48;GPV=1;SPV=0.015726;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr5	93142335	.	A	T	0	PASS	DP=89;GPV=1;SPV=3.7484e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:37,19:22,10:15,9
+chr5	93341444	.	C	CTTT	0	PASS	DP=40;GPV=1;SPV=0.0092864;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,7:8,6:5,1
+chr5	93351645	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.00053646;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:25,8:19,3
+chr5	96680383	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,2:1,1:6,1
+chr5	97634997	.	G	GT	0	PASS	DP=66;GPV=1;SPV=0.015665;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,8:15,7:10,1
+chr5	98071411	.	A	AAGAGAGAGAGAGAGAGAGAGAGAG	0	PASS	DP=25;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,5:6,3:2,2
+chr5	98851539	.	CTTTTTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:15,4:1,0
+chr5	99954797	.	C	CA	0	PASS	DP=88;GPV=1;SPV=0.00080682;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,11:14,6:23,5
+chr5	101381937	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,4:13,3:15,1
+chr5	102050841	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:6,1:5,5
+chr5	102414907	.	GTAAA	G	0	PASS	DP=80;GPV=1;SPV=0.029668;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:14,9:20,5
+chr5	107827145	.	GA	G	0	PASS	DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:14,3:3,1
+chr5	108558362	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:6,2:2,1:4,1
+chr5	109780510	.	CTG	C	0	PASS	DP=83;GPV=1;SPV=0.0024346;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:31,20:18,14:13,6
+chr5	109932957	.	T	TTG	0	PASS	DP=71;GPV=1;SPV=0.049775;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,11:14,6:14,5
+chr5	111098300	.	C	G	0	PASS	DP=101;GPV=1;SPV=0.00075282;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:18,9:26,2
+chr5	111964873	.	A	T	0	PASS	DP=40;GPV=1;SPV=0.026042;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:8,1:5,3
+chr5	112035948	.	ATGTTTAGTTCTCACTTATAAGTGAGAGCATACAGTATTTGGTTTTC	A	0	PASS	DP=55;GPV=1;SPV=0.018989;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:12,9:9,4
+chr5	112377215	.	G	GA	0	PASS	DP=52;GPV=1;SPV=0.0082887;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:15,9:9,1
+chr5	113418689	.	T	C	0	PASS	DP=92;GPV=1;SPV=0.024912;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:18,4:16,2
+chr5	113424132	.	T	TACACACACACAC	0	PASS	DP=43;GPV=1;SPV=0.0037215;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,6:7,2:2,4
+chr5	113942875	.	CTT	C	0	PASS	DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,5:4,4:4,1
+chr5	114385521	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.065336;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:16,4:21,1
+chr5	115547937	.	G	GTGTGTGTGTGTGTATA	0	PASS	DP=27;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:11,2:4,2
+chr5	118300419	.	G	A	0	PASS	DP=107;GPV=1;SPV=0.00035702;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:54,18:31,9:23,9
+chr5	119089293	.	T	TA	0	PASS	DP=28;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,1:2,4
+chr5	119259999	.	TAAAAAAAAAAA	T	0	PASS	DP=43;GPV=1;SPV=0.025988;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,7:6,4:7,3
+chr5	119503076	.	T	TTG	0	PASS	DP=72;GPV=1;SPV=0.030283;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:21,4:6,8
+chr5	120048971	.	T	G	0	PASS	DP=47;GPV=1;SPV=0.027654;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:6,5:11,2
+chr5	121758050	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.00033668;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:42,15:21,7:21,8
+chr5	121946774	.	A	T	0	PASS	DP=81;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:52:1,3:1,2:0,1
+chr5	122768581	.	GAAGAAGAAGAAA	G	0	PASS	DP=67;GPV=1;SPV=0.040341;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:20,4:6,2
+chr5	125385480	.	A	ATTTTTTTTTT	0	PASS	DP=33;GPV=1;SPV=0.0046299;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,11:3,4:4,7
+chr5	126209194	.	C	CGACACTTATGACCTCACTTAATCTTAACTACT	0	PASS	DP=62;GPV=1;SPV=0.044908;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:10,4:22,2
+chr5	126301689	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.020196;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,5:10,3:4,2
+chr5	127674413	.	T	TC	0	PASS	DP=57;GPV=1;SPV=0.0023514;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,10:12,5:8,5
+chr5	128479998	.	A	C	0	PASS	DP=22;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,3:5,1:2,2
+chr5	128818607	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.02607;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:9,2:2,2
+chr5	128818611	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:10,2:3,3
+chr5	128862735	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00054719;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:38,13:19,7:19,6
+chr5	133040733	.	T	TTGTGTG	0	PASS	DP=54;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:17,4:3,6
+chr5	133132133	.	A	AT	0	PASS	DP=92;GPV=1;SPV=0.038534;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:16,2:21,6
+chr5	133132135	.	A	T	0	PASS	DP=81;GPV=1;SPV=0.04432;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:15,1:15,6
+chr5	133625816	.	TC	T	0	PASS	DP=47;GPV=1;SPV=0.11664;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:14,3:11,2
+chr5	133625871	.	CCATAT	C	0	PASS	DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:14,2:4,2
+chr5	133625903	.	CCAT	C	0	PASS	DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,2:5,2
+chr5	134581621	.	C	A	0	PASS	DP=91;GPV=1;SPV=0.012341;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:43,7:14,4:29,3
+chr5	135465724	.	C	CA	0	PASS	DP=115;GPV=1;SPV=2.2194e-05;SS=2;SSC=46;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:45,15:22,6:23,9
+chr5	135886603	.	AT	A	0	PASS	DP=27;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,4:3,1:0,3
+chr5	135886606	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:1,2:1,1:0,1
+chr5	137160497	.	C	CTA	0	PASS	DP=22;GPV=1;SPV=0.020124;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:0,2:7,5
+chr5	137916478	.	T	C	0	PASS	DP=70;GPV=1;SPV=0.043214;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:20,5:14,4
+chr5	138719109	.	C	CA	0	PASS	DP=57;GPV=1;SPV=0.0072028;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,11:17,10:1,1
+chr5	138947465	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.0001115;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:45,15:21,9:24,6
+chr5	139003676	.	G	A	0	PASS	DP=85;GPV=1;SPV=8.4049e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:12,7:18,5
+chr5	140286600	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:1,3:1,2:0,1
+chr5	140467115	.	TTG	T	0	PASS	DP=102;GPV=1;SPV=0.018474;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:52,7:27,4:25,3
+chr5	142188590	.	A	G	0	PASS	DP=84;GPV=1;SPV=0.024367;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:23,5:11,2
+chr5	142683857	.	AATCCTTT	A	0	PASS	DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:11,4:3,4
+chr5	144465779	.	C	CTT	0	PASS	DP=44;GPV=1;SPV=0.028042;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:7,5:5,2
+chr5	145502843	.	G	GT	0	PASS	DP=77;GPV=1;SPV=0.0034956;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:12,5:22,4
+chr5	147260167	.	C	CTG	0	PASS	DP=24;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,2:2,1:3,1
+chr5	147651165	.	T	TTTATCATTACTATAAGAAAA	0	PASS	DP=72;GPV=1;SPV=0.014541;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:14,7:11,5
+chr5	148212537	.	T	TATATA	0	PASS	DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:6,2:8,3
+chr5	151474176	.	A	G	0	PASS	DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:9,2:10,2
+chr5	151474178	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.024248;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:9,2:8,3
+chr5	152278458	.	G	GTTTT	0	PASS	DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,4:3,2:4,2
+chr5	153189298	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.00097618;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,11:27,8:15,3
+chr5	153217085	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.0032114;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:3,4:8,4
+chr5	153428652	.	AG	A	0	PASS	DP=66;GPV=1;SPV=0.046412;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:21,8:12,2
+chr5	154464170	.	C	T	0	PASS	DP=106;GPV=1;SPV=0.0014109;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:56,15:21,4:35,11
+chr5	155032165	.	A	G	0	PASS	DP=56;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,4:13,2:14,2
+chr5	155033235	.	TA	T	0	PASS	DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:23,3:5,1
+chr5	156660289	.	C	T	0	PASS	DP=136;GPV=1;SPV=0.010351;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:51,17:31,10:20,7
+chr5	157890366	.	AT	A	0	PASS	DP=95;GPV=1;SPV=0.028779;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:35,6:17,2:18,4
+chr5	158567730	.	C	CTTTCTTT	0	PASS	DP=47;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,7:6,4:13,3
+chr5	160354597	.	AG	A	0	PASS	DP=51;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:9,10:4,2:5,8
+chr5	161809637	.	TTTTCTTTCTTTCTTTCTTTC	T	0	PASS	DP=61;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:16,11:3,2:13,9
+chr5	162681843	.	A	T	0	PASS	DP=82;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:5,3:3,2:2,1
+chr5	162685313	.	C	CTT	0	PASS	DP=46;GPV=1;SPV=0.00035338;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:28:1,13:0,9:1,4
+chr5	162688688	.	G	T	0	PASS	DP=98;GPV=1;SPV=0.0040464;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:43,8:22,4:21,4
+chr5	162688689	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.0040417;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:23,4:22,4
+chr5	163626366	.	ACT	A	0	PASS	DP=48;GPV=1;SPV=0.0072753;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:8,7:7,6
+chr5	165884152	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.0071318;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:22,3:15,4
+chr5	167181504	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:7,3:17,1
+chr5	168502386	.	T	A	0	PASS	DP=74;GPV=1;SPV=0.052808;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:23,1:14,4
+chr5	168539872	.	A	ATTTTTTTT	0	PASS	DP=61;GPV=1;SPV=0.015377;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,11:14,6:12,5
+chr5	168908214	.	C	T	0	PASS	DP=92;GPV=1;SPV=7.9266e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:19,9:14,3
+chr5	170264978	.	CTTTTTT	C	0	PASS	DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:9,6:3,3
+chr5	170503711	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.016386;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:16,4:7,2
+chr5	170731693	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.068336;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:16,3:5,2
+chr5	172052164	.	G	T	0	PASS	DP=99;GPV=1;SPV=0.0030721;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:18,6:27,3
+chr5	172725544	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0039154;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:16,3:19,4
+chr5	172857589	.	C	G	0	PASS	DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,2:0,1:1,1
+chr5	173289783	.	CCCTTCCTTCCTTCCTTCCTTCCTT	C	0	PASS	DP=30;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,4:0,0:11,4
+chr5	173516978	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:8,4:10,2
+chr5	174061909	.	CT	C	0	PASS	DP=55;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:17,7:5,3
+chr5	175918325	.	C	G	0	PASS	DP=50;GPV=1;SPV=0.039973;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:8,5:13,3
+chr5	178018091	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.011798;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:48,7:27,2:21,5
+chr5	178027845	.	T	G	0	PASS	DP=89;GPV=1;SPV=0.006972;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:22,8:22,1
+chr5	178027971	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.021516;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:59,9:30,1:29,8
+chr5	179013776	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:13,1:9,3
+chr5	179397489	.	GTATATATATATATA	G	0	PASS	DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:6,3:5,1
+chr5	179429980	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.027835;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,13:16,9:12,4
+chr5	179594547	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,14:1,2:7,12
+chr5	180300049	.	G	A	0	PASS	DP=173;GPV=1;SPV=0.018747;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:78,10:44,1:34,9
+chr5	180530909	.	C	G	0	PASS	DP=139;GPV=1;SPV=0.032217;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:58,12:24,2:34,10
+chr5	181032233	.	AG	A	0	PASS	DP=53;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:5,2:3,1:2,1
+chr5	181032238	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:3,2:1,1:2,1
+chr6	1111770	.	C	G	0	PASS	DP=86;GPV=1;SPV=1.727e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:16,7:13,7
+chr6	1512694	.	AAAAG	A	0	PASS	DP=49;GPV=1;SPV=0.0068176;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:9,4:8,6
+chr6	2828420	.	G	GA	0	PASS	DP=32;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,6:5,3:1,3
+chr6	2940604	.	G	A	0	PASS	DP=71;GPV=1;SPV=0.02519;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:13,7:19,2
+chr6	4867772	.	G	GT	0	PASS	DP=74;GPV=1;SPV=0.043808;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,5:14,4:21,1
+chr6	5292829	.	G	A	0	PASS	DP=99;GPV=1;SPV=0.022916;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:52,7:33,5:19,2
+chr6	6332752	.	TA	T	0	PASS	DP=65;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:7,8:3,4:4,4
+chr6	6817878	.	C	CTTTT	0	PASS	DP=37;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,4:9,3:7,1
+chr6	7117388	.	GTTTTTTTTTTTTTTT	G	0	PASS	DP=36;GPV=1;SPV=0.0097821;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,7:5,5:4,2
+chr6	7449715	.	A	ATT	0	PASS	DP=49;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,6:13,3:8,3
+chr6	7659339	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:8,10:5,6:3,4
+chr6	7957018	.	A	AGTGTGT	0	PASS	DP=48;GPV=1;SPV=0.0066622;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,6:11,4:4,2
+chr6	8041312	.	C	CTTTT	0	PASS	DP=48;GPV=1;SPV=0.028628;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:9,7:11,4
+chr6	8901169	.	T	TAAAA	0	PASS	DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,11:5,8:1,3
+chr6	9204743	.	T	C	0	PASS	DP=108;GPV=1;SPV=0.0014733;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:51,11:23,4:28,7
+chr6	9494455	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.10909;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,2:2,1:0,1
+chr6	12337054	.	C	A	0	PASS	DP=100;GPV=1;SPV=0.00065809;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:48,14:33,9:15,5
+chr6	13732406	.	C	A	0	PASS	DP=92;GPV=1;SPV=0.0071789;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:18,5:22,2
+chr6	14448843	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.041422;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,6:11,3:17,3
+chr6	14684389	.	A	G	0	PASS	DP=82;GPV=1;SPV=0.0011599;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:17,7:17,3
+chr6	15277795	.	C	A	0	PASS	DP=67;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:21,5:6,1:15,4
+chr6	16443208	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:8,4:0,1
+chr6	18570841	.	C	G	0	PASS	DP=79;GPV=1;SPV=0.048187;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:17,3:22,2
+chr6	19941221	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.040102;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:19,2:10,4
+chr6	20021488	.	A	AAAATAAAT	0	PASS	DP=85;GPV=1;SPV=0.02282;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:17,7:19,8
+chr6	20273024	.	CTTTTTTTT	C	0	PASS	DP=38;GPV=1;SPV=0.04287;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:11,5:4,4
+chr6	20371541	.	CA	C	0	PASS	DP=47;GPV=1;SPV=0.017517;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:13,8:6,4
+chr6	21156424	.	C	CAAA	0	PASS	DP=48;GPV=1;SPV=0.0020034;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:8,9:5,3
+chr6	21965351	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:1,0:13,4
+chr6	22162978	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.038803;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:15,3:6,7
+chr6	22162980	.	AGT	A	0	PASS	DP=58;GPV=1;SPV=0.011696;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:16,4:8,7
+chr6	22163000	.	ATAGATAGT	A	0	PASS	DP=58;GPV=1;SPV=0.002513;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:13,4:11,6
+chr6	23731309	.	ATT	A	0	PASS	DP=58;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:2,4:1,3:1,1
+chr6	26137737	.	CATATATATATATATATATATAT	C	0	PASS	DP=24;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:7,4:0,3
+chr6	26315902	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,4:10,2:6,2
+chr6	26382666	.	A	G	0	PASS	DP=68;GPV=1;SPV=0.011098;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,6:12,4:15,2
+chr6	26522893	.	A	T	0	PASS	DP=111;GPV=1;SPV=0.0027576;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:47,8:24,4:23,4
+chr6	26605221	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.0048714;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:16,2:10,8
+chr6	27100546	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:5,1:11,3
+chr6	27217046	.	A	AAAAACAAAACAAAAC	0	PASS	DP=57;GPV=1;SPV=0.049992;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,6:14,4:15,2
+chr6	27217081	.	A	C	0	PASS	DP=45;GPV=1;SPV=0.0026559;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,18:10,8:4,10
+chr6	27235620	.	T	G	0	PASS	DP=33;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,4:2,1:5,3
+chr6	27748895	.	C	T	0	PASS	DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:21,5:18,6
+chr6	29238947	.	TTATA	T	0	PASS	DP=90;GPV=1;SPV=0.10966;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:26,4:11,3:15,1
+chr6	29932035	.	C	G	0	PASS	DP=45;GPV=1;SPV=0.01269;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:9,3:6,2
+chr6	30467010	.	ATTTTTTTTTTTTTT	A	0	PASS	DP=46;GPV=1;SPV=0.016525;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:6,1:12,5
+chr6	31487417	.	CA	C	0	PASS	DP=121;GPV=1;SPV=0.0038365;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:64,11:41,3:23,8
+chr6	31487481	.	G	T	0	PASS	DP=162;GPV=1;SPV=0.028495;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:69,19:45,6:24,13
+chr6	32979047	.	G	T	0	PASS	DP=42;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,4:8,2:10,2
+chr6	32993949	.	TTTTTTTTTTTTTGG	T	0	PASS	DP=31;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,8:6,7:4,1
+chr6	33361461	.	G	C	0	PASS	DP=89;GPV=1;SPV=0.00079781;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:22,6:16,5
+chr6	34212002	.	CAAAAAA	C	0	PASS	DP=37;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,10:3,8:5,2
+chr6	34258748	.	A	ATATTTTTTTT	0	PASS	DP=25;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,5:2,3:5,2
+chr6	35543076	.	T	A	0	PASS	DP=113;GPV=1;SPV=0.00017103;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:31,10:17,3
+chr6	35652253	.	A	G	0	PASS	DP=111;GPV=1;SPV=0.040434;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:51,7:33,6:18,1
+chr6	35791058	.	AG	A	0	PASS	DP=135;GPV=1;SPV=0.030144;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:62,19:19,9:43,10
+chr6	36153472	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.00026004;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:24,4:14,7
+chr6	37262032	.	T	C	0	PASS	DP=41;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,4:5,2:3,2
+chr6	38228351	.	C	CCA	0	PASS	DP=34;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,4:5,1:3,3
+chr6	38772971	.	CTTTTTTT	C	0	PASS	DP=37;GPV=1;SPV=0.021064;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:5,9:7,2
+chr6	39058671	.	C	T	0	PASS	DP=110;GPV=1;SPV=0.012167;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:48,15:25,6:23,9
+chr6	41802025	.	G	GT	0	PASS	DP=87;GPV=1;SPV=0.0081641;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,6:19,2:15,4
+chr6	41985304	.	CTT	C	0	PASS	DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:7,8:1,1
+chr6	42138850	.	A	AACACACACACACACACAC	0	PASS	DP=44;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,9:4,5:6,4
+chr6	42494445	.	T	TC	0	PASS	DP=28;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,6:6,3:4,3
+chr6	43570311	.	CAAA	C	0	PASS	DP=31;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:9,4:0,2
+chr6	44271370	.	G	T	0	PASS	DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:24,2:11,2
+chr6	45100541	.	T	TA	0	PASS	DP=55;GPV=1;SPV=0.031247;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:9,7:13,5
+chr6	45399773	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:13,3:9,2
+chr6	45891633	.	C	CA	0	PASS	DP=57;GPV=1;SPV=0.020186;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,10:11,8:9,2
+chr6	46877227	.	C	CTTTCTTTCTTTCTTTCT	0	PASS	DP=66;GPV=1;SPV=0.033698;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,7:8,2:17,5
+chr6	48304249	.	T	G	0	PASS	DP=91;GPV=1;SPV=0.00047744;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:14,7:23,4
+chr6	53157950	.	AAAG	A	0	PASS	DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:11,3:14,2
+chr6	54675034	.	A	G	0	PASS	DP=97;GPV=1;SPV=0.018053;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:49,7:28,4:21,3
+chr6	55962557	.	T	C	0	PASS	DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:12,2:21,4
+chr6	57539658	.	A	G	0	PASS	DP=63;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,4:8,3:15,1
+chr6	57913549	.	C	T	0	PASS	DP=100;GPV=1;SPV=5.9634e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:40,21:21,10:19,11
+chr6	58755015	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr6	59422846	.	T	G	0	PASS	DP=52;GPV=1;SPV=0.031141;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:6,5:10,2
+chr6	63148838	.	CA	C	0	PASS	DP=56;GPV=1;SPV=0.040965;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:19,4:6,1
+chr6	63458066	.	TTA	T	0	PASS	DP=72;GPV=1;SPV=0.079949;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:17,2:18,2
+chr6	67659586	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.024816;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:24,3:16,3
+chr6	68904069	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:10,3:0,1
+chr6	69533355	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.027692;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:21,3:22,3
+chr6	69921531	.	C	CAT	0	PASS	DP=101;GPV=1;SPV=0.0048013;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:38,14:20,8:18,6
+chr6	72074925	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.0018753;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:20,10:24,4
+chr6	74438585	.	AT	A	0	PASS	DP=67;GPV=1;SPV=0.046916;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:17,2:11,2
+chr6	75137886	.	A	T	0	PASS	DP=100;GPV=1;SPV=0.00022955;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:24,10:20,4
+chr6	75456565	.	C	CT	0	PASS	DP=68;GPV=1;SPV=0.00056917;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:19,6:4,3
+chr6	75536160	.	A	T	0	PASS	DP=18;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:0,4:0,1:0,3
+chr6	76272024	.	CTT	C	0	PASS	DP=54;GPV=1;SPV=0.0056817;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,7:1,3:18,4
+chr6	77270294	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.0009357;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:12,5:11,7
+chr6	77561686	.	G	C	0	PASS	DP=94;GPV=1;SPV=0.00032937;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:17,3:15,6
+chr6	79373616	.	C	T	0	PASS	DP=104;GPV=1;SPV=6.6836e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:18,10:18,5
+chr6	80318686	.	T	TA	0	PASS	DP=62;GPV=1;SPV=0.027805;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:10,8:15,5
+chr6	80806606	.	G	C	0	PASS	DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:16,2:20,2
+chr6	81559728	.	C	A	0	PASS	DP=87;GPV=1;SPV=0.0055147;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:18,3:18,4
+chr6	81612427	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.0054566;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,18:13,8:15,10
+chr6	82422987	.	A	T	0	PASS	DP=88;GPV=1;SPV=0.00070597;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:14,6:23,5
+chr6	85872303	.	TTC	T	0	PASS	DP=42;GPV=1;SPV=0.037674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,9:4,2:14,7
+chr6	86090284	.	CTT	C	0	PASS	DP=79;GPV=1;SPV=0.039205;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:12,2:20,2
+chr6	86167786	.	A	T	0	PASS	DP=85;GPV=1;SPV=8.9917e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:16,3:17,11
+chr6	86743844	.	TG	T	0	PASS	DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:11,2:13,2
+chr6	89845243	.	ATG	A	0	PASS	DP=30;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,10:5,9:2,1
+chr6	90473373	.	C	CTG	0	PASS	DP=54;GPV=1;SPV=0.043685;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,8:10,6:9,2
+chr6	90964127	.	TATATACTAC	T	0	PASS	DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:2,2:11,2
+chr6	91841142	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.045802;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:7,2:15,4
+chr6	93015866	.	TCCTCTGTAAAGAG	T	0	PASS	DP=98;GPV=1;SPV=0.0028658;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:22,5:19,3
+chr6	94917868	.	C	CA	0	PASS	DP=67;GPV=1;SPV=0.027604;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:13,2:11,4
+chr6	95121561	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.0054024;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:9,3:7,4
+chr6	95323596	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.0014181;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,11:28,6:14,5
+chr6	95601716	.	ATT	A	0	PASS	DP=34;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:7,2:6,2
+chr6	96136242	.	T	A	0	PASS	DP=87;GPV=1;SPV=4.1533e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:33,15:16,6:17,9
+chr6	96411350	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.00019202;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:14,3:22,9
+chr6	96594227	.	TTATATATATATA	T	0	PASS	DP=44;GPV=1;SPV=0.20757;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,11:6,8:8,3
+chr6	97091981	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.05132;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,4:9,2:4,2
+chr6	98623447	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.00047803;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:17,4:15,9
+chr6	100497438	.	T	C	0	PASS	DP=84;GPV=1;SPV=0.00069443;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:17,3:16,7
+chr6	100659197	.	G	T	0	PASS	DP=94;GPV=1;SPV=0.00035126;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:45,17:25,6:20,11
+chr6	102463894	.	C	A	0	PASS	DP=31;GPV=1;SPV=0.0083313;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:5,7:6,4
+chr6	102757247	.	A	C	0	PASS	DP=97;GPV=1;SPV=0.0025743;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:18,6:25,3
+chr6	103465401	.	C	G	0	PASS	DP=89;GPV=1;SPV=7.238e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,13:16,5:17,8
+chr6	103999545	.	C	A	0	PASS	DP=89;GPV=1;SPV=8.6514e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:20,5:10,6
+chr6	104020542	.	A	G	0	PASS	DP=79;GPV=1;SPV=0.032802;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:13,5:17,3
+chr6	105542764	.	C	CTTTTTTT	0	PASS	DP=32;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,7:7,6:6,1
+chr6	110270837	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,6:12,5:7,1
+chr6	111058932	.	C	CTT	0	PASS	DP=59;GPV=1;SPV=0.0015829;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,12:11,7:8,5
+chr6	113582269	.	T	A	0	PASS	DP=63;GPV=1;SPV=0.056492;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:16,2:18,4
+chr6	114320954	.	G	A	0	PASS	DP=66;GPV=1;SPV=4.5866e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:9,6:11,6
+chr6	114913348	.	T	A	0	PASS	DP=106;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:5,4:3,3:2,1
+chr6	117069620	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.0057488;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:8,7:8,10
+chr6	117738740	.	TA	T	0	PASS	DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:8,6:6,1
+chr6	118519466	.	GTGTGT	G	0	PASS	DP=28;GPV=1;SPV=0.016499;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:5,5:1,1
+chr6	118760105	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.00073099;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:14,11:21,2
+chr6	122228508	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.0017182;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:49,11:22,8:27,3
+chr6	122353620	.	A	T	0	PASS	DP=95;GPV=1;SPV=0.00029045;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:39,12:21,5:18,7
+chr6	124139079	.	A	ATTTTTTT	0	PASS	DP=35;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:8,10:4,7:4,3
+chr6	124658961	.	A	T	0	PASS	DP=76;GPV=1;SPV=0.020406;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:14,2:17,3
+chr6	124687519	.	TAC	T	0	PASS	DP=40;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:4,6:8,1
+chr6	128291921	.	C	T	0	PASS	DP=102;GPV=1;SPV=0.0034056;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:19,2:21,5
+chr6	129055186	.	TTA	T	0	PASS	DP=71;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,4:17,1:17,3
+chr6	130728750	.	C	CAAAAAAAA	0	PASS	DP=63;GPV=1;SPV=0.010573;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,10:13,9:7,1
+chr6	131499479	.	G	GT	0	PASS	DP=29;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,4:5,1:1,3
+chr6	131559893	.	C	CT	0	PASS	DP=67;GPV=1;SPV=0.0060843;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,13:13,6:11,7
+chr6	133394282	.	GTGTTTTTTTTTTTT	G	0	PASS	DP=32;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,7:5,6:1,1
+chr6	133644593	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.00076721;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:19,6:9,6
+chr6	136369356	.	T	C	0	PASS	DP=123;GPV=1;SPV=0.00015018;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:50,12:30,7:20,5
+chr6	138853256	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.00015449;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:14,7:29,6
+chr6	139341552	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.0013696;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,9:10,5:24,4
+chr6	141441319	.	T	G	0	PASS	DP=70;GPV=1;SPV=0.032222;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:14,3:16,8
+chr6	142818711	.	G	GA	0	PASS	DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:15,3:5,2
+chr6	142818723	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:15,3:6,1
+chr6	142908854	.	C	CAAA	0	PASS	DP=69;GPV=1;SPV=0.0010314;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:13,16:10,13:3,3
+chr6	145301406	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.0012682;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:20,5:17,4
+chr6	148326414	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.0098884;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:4,5:4,1
+chr6	148482688	.	A	ATTTTTTTTTT	0	PASS	DP=60;GPV=1;SPV=0.044564;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,9:16,5:11,4
+chr6	149915078	.	C	CCTTTT	0	PASS	DP=35;GPV=1;SPV=0.10911;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:16,2:3,4
+chr6	150833044	.	T	A	0	PASS	DP=68;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:7,2:5,1:2,1
+chr6	153349342	.	CA	C	0	PASS	DP=66;GPV=1;SPV=0.01339;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:24,3:8,5
+chr6	153496288	.	C	A	0	PASS	DP=94;GPV=1;SPV=0.00014589;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:22,10:14,2
+chr6	154331405	.	A	AAGAAAGAAAGAAAGAAAGAG	0	PASS	DP=75;GPV=1;SPV=0.049488;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,6:27,2:8,4
+chr6	154687498	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,3:12,2
+chr6	154812292	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:8,7:4,1
+chr6	156003552	.	A	G	0	PASS	DP=92;GPV=1;SPV=0.0017721;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:41,10:19,4:22,6
+chr6	157279320	.	A	AAG	0	PASS	DP=84;GPV=1;SPV=0.018965;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,7:19,3:23,4
+chr6	157522730	.	CTCCTCCCTCCCTCCCTTTCT	C	0	PASS	DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:1,2:8,3
+chr6	158761301	.	C	CTTTTTT	0	PASS	DP=51;GPV=1;SPV=0.099229;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,5:18,4:8,1
+chr6	159010200	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.040224;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:6,1:21,4
+chr6	159133753	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.04992;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,7:9,1:18,6
+chr6	160872501	.	C	CTTTTCT	0	PASS	DP=31;GPV=1;SPV=0.019162;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:4,3:8,4
+chr6	162021463	.	T	A	0	PASS	DP=58;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,4:9,3:5,1
+chr6	162418613	.	A	AGTGTGTGTGTGTGTGTGTGTGT	0	PASS	DP=61;GPV=1;SPV=0.046347;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,6:14,4:9,2
+chr6	162612597	.	CAAAAA	C	0	PASS	DP=58;GPV=1;SPV=0.0073681;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:16,11:5,4
+chr6	162658671	.	AAAG	A	0	PASS	DP=88;GPV=1;SPV=0.00483;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:36,21:13,7:23,14
+chr6	164370462	.	TA	T	0	PASS	DP=82;GPV=1;SPV=0.00012362;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:18,11:6,3:12,8
+chr6	164513819	.	G	T	0	PASS	DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,3:5,2
+chr6	164848823	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.00016948;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:16,4:13,5
+chr6	165136817	.	C	G	0	PASS	DP=74;GPV=1;SPV=0.075844;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:25,2:15,3
+chr6	166164374	.	C	G	0	PASS	DP=97;GPV=1;SPV=9.7731e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:18,9:18,3
+chr6	167376005	.	T	C	0	PASS	DP=75;GPV=1;SPV=0.020267;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:11,8:16,3
+chr6	167941643	.	A	AG	0	PASS	DP=27;GPV=1;SPV=0.024799;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:7,4:2,1
+chr6	168001615	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.00074754;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,12:7,3:9,9
+chr6	168560884	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr6	168589727	.	G	GCC	0	PASS	DP=100;GPV=1;SPV=0.047311;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:28,3:17,6
+chr6	168589730	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.036692;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:24,5:15,8
+chr6	168911467	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,4:10,2:5,2
+chr6	170039884	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,5:15,2:4,3
+chr6	170736435	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.21163;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:24,1:6,4
+chr7	1190285	.	G	GAGTC	0	PASS	DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:17,1:11,3
+chr7	1408585	.	A	G	0	PASS	DP=90;GPV=1;SPV=0.0012326;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:19,6:14,2
+chr7	2452593	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:0,0:11,4
+chr7	2859404	.	C	CAT	0	PASS	DP=34;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,10:1,7:7,3
+chr7	2895183	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:9,5:3,1
+chr7	3280111	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.012883;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:11,4:11,7
+chr7	4083708	.	T	TGCTC	0	PASS	DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:0,1:15,7
+chr7	4598967	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,1:8,3
+chr7	6457972	.	CT	C	0	PASS	DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:13,2:10,2
+chr7	6745558	.	T	G	0	PASS	DP=32;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,4:5,3:10,1
+chr7	6757889	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:13,4:15,1
+chr7	9045935	.	A	ATT	0	PASS	DP=33;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,4:10,1:5,3
+chr7	9143957	.	A	ATATATAAACATATATATATAAATATATG	0	PASS	DP=41;GPV=1;SPV=0.047035;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,4:4,1:5,3
+chr7	9203198	.	ATTTTTTTTTTTTTTTTTTTTTT	A	0	PASS	DP=28;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:7,1:5,3
+chr7	10723665	.	C	G	0	PASS	DP=84;GPV=1;SPV=0.012866;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:19,11:10,7:9,4
+chr7	11179957	.	TATATATAATGTATATATACATAATATATA	T	0	PASS	DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:3,1:20,4
+chr7	13148829	.	CA	C	0	PASS	DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,1:14,4
+chr7	13587394	.	G	GTT	0	PASS	DP=68;GPV=1;SPV=0.0012561;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:20,17:11,8:9,9
+chr7	14259379	.	TTCTC	T	0	PASS	DP=66;GPV=1;SPV=0.017938;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:13,4:15,2
+chr7	14418390	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:10,4:11,7
+chr7	15014868	.	C	CTTTT	0	PASS	DP=31;GPV=1;SPV=0.0088578;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,7:0,5:1,2
+chr7	15406281	.	CAT	C	0	PASS	DP=85;GPV=1;SPV=0.03714;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:42,9:15,5:27,4
+chr7	15735093	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.017694;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,6:9,5:3,1
+chr7	16415707	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.0029154;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:14,6:16,4
+chr7	16990931	.	C	CTGTG	0	PASS	DP=81;GPV=1;SPV=0.033577;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,11:16,9:14,2
+chr7	17752194	.	G	GT	0	PASS	DP=72;GPV=1;SPV=0.0013728;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:14,9:18,3
+chr7	18706160	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.082337;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,6:7,4:9,2
+chr7	19302139	.	C	CA	0	PASS	DP=54;GPV=1;SPV=0.041838;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,5:14,4:9,1
+chr7	20661540	.	C	CTT	0	PASS	DP=70;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,6:13,4:13,2
+chr7	20668664	.	C	A	0	PASS	DP=134;GPV=1;SPV=0.035422;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:73,14:25,7:48,7
+chr7	22114012	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.016586;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:7,3:18,4
+chr7	23046402	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.0037629;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,14:15,11:4,3
+chr7	23637163	.	AG	A	0	PASS	DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:7,3:5,1
+chr7	23690199	.	A	ATATATATAT	0	PASS	DP=41;GPV=1;SPV=0.04287;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,9:4,4:11,5
+chr7	24355915	.	CTA	C	0	PASS	DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:17,2:18,3
+chr7	24430732	.	ATATATATAAATG	A	0	PASS	DP=65;GPV=1;SPV=0.064403;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:14,3:15,1
+chr7	25253506	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.0021281;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:21,3:12,4
+chr7	26083654	.	C	T	0	PASS	DP=117;GPV=1;SPV=1.5421e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:41,22:23,12:18,10
+chr7	26962990	.	TAAAAAAAAAAAA	T	0	PASS	DP=37;GPV=1;SPV=0.051628;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:7,7:11,1
+chr7	28057410	.	T	C	0	PASS	DP=96;GPV=1;SPV=6.763e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:42,18:21,9:21,9
+chr7	28725645	.	T	TTAAA	0	PASS	DP=89;GPV=1;SPV=0.047268;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,12:25,7:12,5
+chr7	29123628	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,1:5,3
+chr7	29784970	.	A	C	0	PASS	DP=120;GPV=1;SPV=0.00038558;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:59,15:26,9:33,6
+chr7	29986717	.	AT	A	0	PASS	DP=82;GPV=1;SPV=0.034293;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,12:24,4:13,8
+chr7	30766197	.	A	T	0	PASS	DP=92;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:29,4:21,2:8,2
+chr7	32374118	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:19,4:1,0
+chr7	32954414	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,4:4,2:6,2
+chr7	33695812	.	T	TTATATATATATATA	0	PASS	DP=32;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,7:2,5:4,2
+chr7	34128086	.	G	A	0	PASS	DP=104;GPV=1;SPV=3.0233e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:39,14:16,7:23,7
+chr7	34953728	.	A	G	0	PASS	DP=108;GPV=1;SPV=0.047669;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:29,8:12,5:17,3
+chr7	36517204	.	TTC	T	0	PASS	DP=56;GPV=1;SPV=0.02403;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,8:3,4:12,4
+chr7	37882605	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.047759;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,5:11,3:4,2
+chr7	39015837	.	A	ATT	0	PASS	DP=32;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:2,3:1,2:1,1
+chr7	39015991	.	A	T	0	PASS	DP=35;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,5:14,4:5,1
+chr7	39015997	.	T	TTATATATATTATATA	0	PASS	DP=41;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,4:14,3:6,1
+chr7	43983807	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.03116;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:20,1:13,4
+chr7	44032112	.	A	T	0	PASS	DP=69;GPV=1;SPV=0.023029;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:23,3:9,3
+chr7	45841359	.	G	T	0	PASS	DP=90;GPV=1;SPV=4.0373e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:14,6:16,6
+chr7	46010128	.	T	G	0	PASS	DP=44;GPV=1;SPV=0.1599;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,8:7,3:12,5
+chr7	46843617	.	TA	T	0	PASS	DP=45;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,10:3,9:7,1
+chr7	48550265	.	C	CTTTTTTTTTTT	0	PASS	DP=71;GPV=1;SPV=0.0040597;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:9,10:15,2
+chr7	48913634	.	T	G	0	PASS	DP=71;GPV=1;SPV=0.047959;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,7:16,1:15,6
+chr7	48922573	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.0031611;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:13,4:13,4
+chr7	49014897	.	C	T	0	PASS	DP=102;GPV=1;SPV=1.4291e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:41,18:28,9:13,9
+chr7	49032613	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.00054309;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:21,5:16,6
+chr7	52476780	.	G	C	0	PASS	DP=71;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,5:11,3:14,2
+chr7	52562752	.	C	CAAA	0	PASS	DP=63;GPV=1;SPV=0.045845;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,8:20,7:6,1
+chr7	53458023	.	G	C	0	PASS	DP=115;GPV=1;SPV=0.00010387;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:57,21:29,12:28,9
+chr7	53700155	.	A	T	0	PASS	DP=95;GPV=1;SPV=6.5776e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:30,18:14,9:16,9
+chr7	53761057	.	G	T	0	PASS	DP=95;GPV=1;SPV=0.00048809;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:23,6:18,6
+chr7	54397052	.	T	G	0	PASS	DP=59;GPV=1;SPV=0.06127;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:17,4:15,2
+chr7	54397100	.	T	TA	0	PASS	DP=60;GPV=1;SPV=0.026658;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:12,5:18,2
+chr7	54397143	.	T	TA	0	PASS	DP=73;GPV=1;SPV=0.0071548;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:11,6:21,7
+chr7	54416638	.	A	T	0	PASS	DP=71;GPV=1;SPV=0.062192;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,6:10,2:7,4
+chr7	55323229	.	A	C	0	PASS	DP=60;GPV=1;SPV=0.052719;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,5:14,2:13,3
+chr7	56736408	.	A	C	0	PASS	DP=88;GPV=1;SPV=0.028989;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:17,2:20,5
+chr7	56736546	.	G	C	0	PASS	DP=71;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:17,1:19,8
+chr7	56802275	.	T	C	0	PASS	DP=151;GPV=1;SPV=0.021192;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:65,16:38,6:27,10
+chr7	56870984	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.043084;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:20,3:25,2
+chr7	56972510	.	G	T	0	PASS	DP=136;GPV=1;SPV=0.02467;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:54,16:31,11:23,5
+chr7	57389185	.	G	A	0	PASS	DP=109;GPV=1;SPV=5.8494e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:21,7:15,7
+chr7	59452090	.	C	G	0	PASS	DP=57;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:0,0:31,4
+chr7	60996788	.	GAGATGAAA	G	0	PASS	DP=185;GPV=1;SPV=0.0069242;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:91,11:58,9:33,2
+chr7	61247396	.	G	A	0	PASS	DP=78;GPV=1;SPV=5.4574e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:13,8:14,5
+chr7	61381733	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.011433;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:16,7:20,3
+chr7	63759651	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.043658;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:0,1:27,3
+chr7	64254999	.	C	CAAA	0	PASS	DP=55;GPV=1;SPV=0.0013639;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:8,10:3,9:5,1
+chr7	65123873	.	T	C	0	PASS	DP=119;GPV=1;SPV=0.035299;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:58,8:23,1:35,7
+chr7	65622845	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.016132;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:24,13:12,9:12,4
+chr7	66421225	.	C	CAA	0	PASS	DP=51;GPV=1;SPV=0.010685;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,12:10,10:6,2
+chr7	66562091	.	AG	A	0	PASS	DP=77;GPV=1;SPV=0.048716;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:15,1:13,4
+chr7	66598828	.	T	TCTGCTGCTGCTG	0	PASS	DP=49;GPV=1;SPV=0.0027565;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:10,13:6,9:4,4
+chr7	67180423	.	TA	T	0	PASS	DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:10,3:14,1
+chr7	67252893	.	C	CAAAT	0	PASS	DP=83;GPV=1;SPV=3.1103e-06;SS=2;SSC=55;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:26,26:12,17:14,9
+chr7	67409850	.	TTC	T	0	PASS	DP=40;GPV=1;SPV=0.036036;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:1,0:12,4
+chr7	67435937	.	CT	C	0	PASS	DP=35;GPV=1;SPV=0.00015256;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:3,14:1,11:2,3
+chr7	67548523	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.0073893;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:44,8:22,3:22,5
+chr7	67903888	.	T	TA	0	PASS	DP=74;GPV=1;SPV=0.036173;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:21,9:10,1
+chr7	67989694	.	T	TAAAAAAAAAA	0	PASS	DP=51;GPV=1;SPV=0.12446;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,5:15,4:13,1
+chr7	68600503	.	C	CT	0	PASS	DP=63;GPV=1;SPV=0.041607;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:22,9:10,5:12,4
+chr7	70084077	.	C	CA	0	PASS	DP=78;GPV=1;SPV=3.4423e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:14,6:13,8
+chr7	71290347	.	G	A	0	PASS	DP=108;GPV=1;SPV=9.1458e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:50,18:30,11:20,7
+chr7	72299689	.	C	CT	0	PASS	DP=48;GPV=1;SPV=0.0095364;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,9:6,8:7,1
+chr7	72593820	.	TAAA	T	0	PASS	DP=41;GPV=1;SPV=0.020128;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:7,6:3,1
+chr7	72756201	.	T	TTTTTATTTTA	0	PASS	DP=93;GPV=1;SPV=0.037443;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:30,14:7,10:23,4
+chr7	72876661	.	C	CAA	0	PASS	DP=28;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,4:3,3:4,1
+chr7	73211608	.	C	CTT	0	PASS	DP=66;GPV=1;SPV=0.035907;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:16,6:6,1
+chr7	74016494	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,2:5,3
+chr7	74671079	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:7,4:3,1
+chr7	74861501	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,9:4,8:4,1
+chr7	74955968	.	G	T	0	PASS	DP=42;GPV=1;SPV=0.043618;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:7,1:9,6
+chr7	74960683	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,10:10,7:11,3
+chr7	76046341	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.023045;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,9:3,4:4,5
+chr7	76088684	.	CA	C	0	PASS	DP=80;GPV=1;SPV=0.069135;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,4:15,3:12,1
+chr7	76262840	.	GA	G	0	PASS	DP=70;GPV=1;SPV=0.079534;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:28,4:10,1
+chr7	76460515	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:13,3:14,1
+chr7	76500368	.	C	G	0	PASS	DP=73;GPV=1;SPV=0.031994;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,9:10,1:15,8
+chr7	76622297	.	C	T	0	PASS	DP=101;GPV=1;SPV=0.016746;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:25,1:21,8
+chr7	76641285	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:9,2:15,2
+chr7	76969216	.	T	G	0	PASS	DP=55;GPV=1;SPV=0.010634;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:2,6:12,3
+chr7	76970542	.	C	T	0	PASS	DP=122;GPV=1;SPV=0.023497;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:51,9:25,3:26,6
+chr7	78070630	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:24,1:8,3
+chr7	78430240	.	C	CTTTT	0	PASS	DP=33;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,5:6,3:6,2
+chr7	79625141	.	T	TATATA	0	PASS	DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:13,3:20,2
+chr7	79767092	.	G	A	0	PASS	DP=115;GPV=1;SPV=4.326e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:49,16:24,9:25,7
+chr7	80152558	.	CT	C	0	PASS	DP=45;GPV=1;SPV=0.026716;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:14,6:3,2
+chr7	80964594	.	A	T	0	PASS	DP=71;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:4,5:2,3:2,2
+chr7	81736894	.	G	GGTGTGTGTGTGTGT	0	PASS	DP=63;GPV=1;SPV=0.018698;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:10,6:10,4
+chr7	82322451	.	C	CAA	0	PASS	DP=43;GPV=1;SPV=0.019737;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,8:8,7:2,1
+chr7	82512544	.	G	A	0	PASS	DP=101;GPV=1;SPV=1.8109e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:37,20:18,10:19,10
+chr7	84736856	.	A	T	0	PASS	DP=92;GPV=1;SPV=0.12591;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:27,4:19,1:8,3
+chr7	84750620	.	G	A	0	PASS	DP=96;GPV=1;SPV=8.6302e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:32,19:17,6:15,13
+chr7	85481067	.	A	ATGTG	0	PASS	DP=46;GPV=1;SPV=0.0020696;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:6,6:11,4
+chr7	85717463	.	CT	C	0	PASS	DP=51;GPV=1;SPV=0.0096405;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:16,9:11,8:5,1
+chr7	87350028	.	T	C	0	PASS	DP=106;GPV=1;SPV=2.9752e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:23,6:20,10
+chr7	87766872	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.017595;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:46,7:21,5:25,2
+chr7	88604328	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.00034961;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:18,8:12,3
+chr7	91922242	.	AAAAAAAC	A	0	PASS	DP=42;GPV=1;SPV=0.0050167;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:7,4:10,7
+chr7	93405435	.	T	G	0	PASS	DP=74;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:13,4:20,2
+chr7	96868173	.	A	ATTT	0	PASS	DP=33;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,6:5,5:6,1
+chr7	96898974	.	T	TTTATTATTATTATTATTATTA	0	PASS	DP=61;GPV=1;SPV=0.0063671;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:7,6:11,6
+chr7	97712859	.	C	T	0	PASS	DP=90;GPV=1;SPV=1.9538e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:36,19:20,10:16,9
+chr7	98420585	.	G	GTA	0	PASS	DP=77;GPV=1;SPV=0.036437;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:14,5:19,2
+chr7	99180901	.	A	C	0	PASS	DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:4,1:2,1
+chr7	100457801	.	A	ATGTGTGTG	0	PASS	DP=40;GPV=1;SPV=0.027751;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,5:5,3:4,2
+chr7	100998245	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:1,1:6,1
+chr7	101140194	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:4,2:12,2
+chr7	101140236	.	GAA	G	0	PASS	DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,1:0,3
+chr7	101146056	.	C	A	0	PASS	DP=98;GPV=1;SPV=0.0017227;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:48,12:28,7:20,5
+chr7	101241637	.	C	CTT	0	PASS	DP=49;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,7:13,6:3,1
+chr7	102547818	.	GAA	G	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:8,4:0,0
+chr7	102554519	.	G	A	0	PASS	DP=222;GPV=1;SPV=0.0040935;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:126:104,22:24,12:80,10
+chr7	102570134	.	GA	G	0	PASS	DP=44;GPV=1;SPV=0.034481;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:4,2:10,4
+chr7	102572592	.	T	C	0	PASS	DP=588;GPV=1;SPV=0.044139;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:304:264,40:139,20:125,20
+chr7	102665519	.	T	G	0	PASS	DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:5,1:19,3
+chr7	102668693	.	G	A	0	PASS	DP=160;GPV=1;SPV=0.037009;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:84,19:39,10:45,9
+chr7	105071580	.	GTGTATATATATATA	G	0	PASS	DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:5,3:8,1
+chr7	105455567	.	G	C	0	PASS	DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:7,3:13,1
+chr7	105727777	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.072836;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,7:7,4:9,3
+chr7	107065336	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,3:3,2:3,1
+chr7	107158258	.	TAGAA	T	0	PASS	DP=95;GPV=1;SPV=0.01609;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:25,2:18,4
+chr7	107158264	.	G	C	0	PASS	DP=96;GPV=1;SPV=0.011583;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:24,2:17,4
+chr7	107909839	.	CT	C	0	PASS	DP=55;GPV=1;SPV=0.035511;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,9:12,6:6,3
+chr7	108549354	.	T	G	0	PASS	DP=107;GPV=1;SPV=0.0010134;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:20,7:26,3
+chr7	108891130	.	GTTTTT	G	0	PASS	DP=32;GPV=1;SPV=0.1371;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:13,5:4,1
+chr7	109038790	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:9,3:4,1
+chr7	109751577	.	GTTTTTTT	G	0	PASS	DP=27;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,4:6,3:1,1
+chr7	111537527	.	CT	C	0	PASS	DP=41;GPV=1;SPV=0.0037321;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:10,8:5,1
+chr7	116562964	.	A	AAAG	0	PASS	DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:20,3:7,1
+chr7	116562978	.	GGA	G	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:22,3:6,1
+chr7	117529217	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:4,4:16,1
+chr7	119646481	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.00014726;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:15,4:11,8
+chr7	119654833	.	G	GA	0	PASS	DP=82;GPV=1;SPV=0.0057229;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:39,9:19,7:20,2
+chr7	120050531	.	T	A	0	PASS	DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:9,3:16,2
+chr7	120167623	.	G	A	0	PASS	DP=122;GPV=1;SPV=2.0285e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:46,14:28,7:18,7
+chr7	120265704	.	G	A	0	PASS	DP=88;GPV=1;SPV=0.039155;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:22,3:20,2
+chr7	121380733	.	T	TTATATATATATATATATATATA	0	PASS	DP=50;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:17,2:9,2
+chr7	121395252	.	G	GATAC	0	PASS	DP=91;GPV=1;SPV=0.031169;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,5:21,3:14,2
+chr7	123990564	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.0018214;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:16,1:17,6
+chr7	124784842	.	CTTTTTTT	C	0	PASS	DP=22;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:5,3:3,1
+chr7	124991025	.	G	A	0	PASS	DP=119;GPV=1;SPV=0.00024999;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:58,16:33,4:25,12
+chr7	125143216	.	CTT	C	0	PASS	DP=30;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,7:6,5:4,2
+chr7	125289405	.	G	GATATATATATATATATATAT	0	PASS	DP=23;GPV=1;SPV=0.0055944;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:1,8:1,7:0,1
+chr7	126763472	.	TACACAC	T	0	PASS	DP=53;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:4,2:3,1:1,1
+chr7	127029006	.	A	C	0	PASS	DP=93;GPV=1;SPV=0.00047793;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:23,5:15,6
+chr7	127125765	.	A	AACACACACACAC	0	PASS	DP=46;GPV=1;SPV=0.0015492;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:5,9:4,6:1,3
+chr7	129114664	.	C	T	0	PASS	DP=89;GPV=1;SPV=8.8849e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:18,4:14,8
+chr7	129659073	.	C	CTTTT	0	PASS	DP=50;GPV=1;SPV=0.016464;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:17,3:3,3
+chr7	129696084	.	A	AAAC	0	PASS	DP=38;GPV=1;SPV=0.032005;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,5:8,2:1,3
+chr7	129790556	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:10,5:3,1:7,4
+chr7	129884416	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.036457;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,7:8,6:8,1
+chr7	130257636	.	C	T	0	PASS	DP=23;GPV=1;SPV=0.019231;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,4:0,0:3,4
+chr7	131189547	.	C	A	0	PASS	DP=108;GPV=1;SPV=0.083225;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:25,5:11,2:14,3
+chr7	131227477	.	C	CTT	0	PASS	DP=67;GPV=1;SPV=0.086167;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:12,2:21,2
+chr7	131227493	.	TTC	T	0	PASS	DP=66;GPV=1;SPV=0.069705;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,5:12,3:22,2
+chr7	132217179	.	A	T	0	PASS	DP=101;GPV=1;SPV=0.0002238;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:22,5:19,7
+chr7	132615927	.	A	ATCTCTCTCTCTCTCTCTC	0	PASS	DP=47;GPV=1;SPV=0.25076;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,4:8,1:21,3
+chr7	133247882	.	AT	A	0	PASS	DP=50;GPV=1;SPV=0.034541;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:14,7:8,3
+chr7	133737909	.	C	CTTTT	0	PASS	DP=30;GPV=1;SPV=0.27368;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,7:2,5:9,2
+chr7	135309610	.	C	CTT	0	PASS	DP=37;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,8:5,5:7,3
+chr7	135819017	.	T	C	0	PASS	DP=112;GPV=1;SPV=4.4906e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:50,18:26,7:24,11
+chr7	136191578	.	C	A	0	PASS	DP=102;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:25,10:14,5:11,5
+chr7	137792282	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.0071224;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:47,9:29,6:18,3
+chr7	138636470	.	A	AT	0	PASS	DP=82;GPV=1;SPV=0.0019055;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:18,5:18,5
+chr7	138745963	.	AT	A	0	PASS	DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:7,2:13,2
+chr7	139905057	.	T	TTCTTTCTTTC	0	PASS	DP=60;GPV=1;SPV=0.025917;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,5:14,1:10,4
+chr7	140266059	.	A	ATT	0	PASS	DP=59;GPV=1;SPV=0.024063;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:14,7:7,2
+chr7	140961346	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.047956;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:3,1:10,4
+chr7	141432146	.	CTTT	C	0	PASS	DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,5:5,1
+chr7	142378361	.	G	GTT	0	PASS	DP=85;GPV=1;SPV=0.033108;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:17,2:22,3
+chr7	142814163	.	CTTTTTTTTTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.0053554;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,8:2,6:5,2
+chr7	144318748	.	G	A	0	PASS	DP=25;GPV=1;SPV=0.0068026;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:0,3:4,3
+chr7	145673910	.	C	CAAAAAAAAAA	0	PASS	DP=52;GPV=1;SPV=0.022623;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,6:11,5:5,1
+chr7	146901870	.	C	CT	0	PASS	DP=45;GPV=1;SPV=0.0068445;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,10:4,6:14,4
+chr7	147033176	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:6,4:3,1:3,3
+chr7	147239929	.	G	C	0	PASS	DP=106;GPV=1;SPV=0.00041262;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:31,10:17,3
+chr7	148598765	.	G	T	0	PASS	DP=41;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:4,8:4,3:0,5
+chr7	149542686	.	C	CA	0	PASS	DP=56;GPV=1;SPV=0.0042972;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,12:14,11:3,1
+chr7	150007999	.	C	G	0	PASS	DP=128;GPV=1;SPV=0.028806;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:55,9:29,1:26,8
+chr7	150797514	.	G	A	0	PASS	DP=108;GPV=1;SPV=6.6865e-10;SS=2;SSC=91;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:30,27:17,18:13,9
+chr7	152238768	.	T	C	0	PASS	DP=109;GPV=1;SPV=0.03511;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:47,14:23,7:24,7
+chr7	152480647	.	A	T	0	PASS	DP=72;GPV=1;SPV=0.012115;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,8:21,3:14,5
+chr7	152511786	.	C	CT	0	PASS	DP=48;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,10:13,8:3,2
+chr7	152874515	.	G	GC	0	PASS	DP=45;GPV=1;SPV=0.16482;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:2,2:25,3
+chr7	152938560	.	C	T	0	PASS	DP=94;GPV=1;SPV=8.7178e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:20,4:16,9
+chr7	153762484	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.0056915;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:18,4:22,3
+chr7	153845294	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.001855;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:46,11:27,5:19,6
+chr7	154776250	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.047725;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:41,11:32,4:9,7
+chr7	155050527	.	T	TACACAC	0	PASS	DP=71;GPV=1;SPV=0.038903;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,12:20,10:11,2
+chr7	155111533	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:2,5:7,1
+chr7	155539625	.	G	A	0	PASS	DP=96;GPV=1;SPV=3.4257e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:21,7:16,8
+chr7	156024264	.	C	A	0	PASS	DP=118;GPV=1;SPV=0.00017676;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:56,16:27,9:29,7
+chr7	156389357	.	C	T	0	PASS	DP=114;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:58,8:28,2:30,6
+chr7	157498375	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.037307;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:10,3:15,2
+chr7	157982292	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:5,2:6,4
+chr7	158089591	.	A	T	0	PASS	DP=104;GPV=1;SPV=0.018729;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:27,4:14,5
+chr7	158166518	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.039387;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:13,5:6,1
+chr7	158320111	.	ACACACACACAGCCTCCCT	A	0	PASS	DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:17,1:0,3
+chr8	283011	.	G	A	0	PASS	DP=37;GPV=1;SPV=0.26049;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:21,3:18,1:3,2
+chr8	403891	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:11,1:16,3
+chr8	1017526	.	C	CTG	0	PASS	DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:12,3:7,2
+chr8	1104182	.	G	T	0	PASS	DP=82;GPV=1;SPV=8.0217e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:20,10:13,6
+chr8	1275848	.	T	TAA	0	PASS	DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:7,3:18,1
+chr8	1275920	.	AAT	A	0	PASS	DP=46;GPV=1;SPV=0.031602;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:11,1:10,5
+chr8	2120675	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.020362;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,5:0,2:4,3
+chr8	2516725	.	T	A	0	PASS	DP=106;GPV=1;SPV=6.5335e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:33,21:17,8:16,13
+chr8	3068584	.	C	T	0	PASS	DP=98;GPV=1;SPV=0.00020622;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:41,13:26,7:15,6
+chr8	3390899	.	G	A	0	PASS	DP=96;GPV=1;SPV=6.289e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:40,16:26,8:14,8
+chr8	3906261	.	G	T	0	PASS	DP=91;GPV=1;SPV=0.0010064;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:14,7:26,4
+chr8	4409642	.	CT	C	0	PASS	DP=39;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,8:2,7:2,1
+chr8	5269651	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.0049996;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:21,8:24,1
+chr8	5624850	.	T	TAA	0	PASS	DP=41;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,4:12,3:7,1
+chr8	5655618	.	A	C	0	PASS	DP=93;GPV=1;SPV=0.0012714;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:20,3:20,7
+chr8	6113421	.	TACTATATACAGTGTATATACACTATAGAC	T	0	PASS	DP=42;GPV=1;SPV=0.32127;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:16,2:12,2
+chr8	6261270	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.014917;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:18,2:23,5
+chr8	6768735	.	GAA	G	0	PASS	DP=67;GPV=1;SPV=0.029045;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,7:14,5:8,2
+chr8	7207095	.	C	G	0	PASS	DP=52;GPV=1;SPV=0.0093016;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:8,10:13,5
+chr8	7376048	.	T	C	0	PASS	DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,3:11,1
+chr8	7376049	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.098182;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:12,2:10,1
+chr8	7482193	.	A	G	0	PASS	DP=131;GPV=1;SPV=0.016522;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:56,18:31,5:25,13
+chr8	7583423	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:17,4:0,0
+chr8	7801383	.	C	A	0	PASS	DP=74;GPV=1;SPV=0.00038792;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,18:23,14:5,4
+chr8	7818239	.	T	G	0	PASS	DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:11,5:1,1
+chr8	8057148	.	A	C	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:8,4:0,0
+chr8	8067091	.	G	A	0	PASS	DP=213;GPV=1;SPV=0.024755;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:92,14:54,4:38,10
+chr8	8142268	.	A	T	0	PASS	DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:0,0:14,4
+chr8	8183755	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.077596;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:16,4:20,1
+chr8	8313737	.	T	A	0	PASS	DP=96;GPV=1;SPV=1.4277e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:13,9:20,5
+chr8	8436016	.	G	GT	0	PASS	DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:6,3:5,1
+chr8	8447410	.	CTT	C	0	PASS	DP=36;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,5:9,1:6,4
+chr8	8558379	.	C	A	0	PASS	DP=115;GPV=1;SPV=4.326e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:49,16:13,5:36,11
+chr8	8879564	.	C	T	0	PASS	DP=89;GPV=1;SPV=8.3554e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:25,5:11,10
+chr8	9973961	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.040392;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,7:16,5:12,2
+chr8	10048938	.	GT	G	0	PASS	DP=96;GPV=1;SPV=0.00070234;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:43,12:23,9:20,3
+chr8	11700075	.	T	C	0	PASS	DP=112;GPV=1;SPV=0.00053331;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:48,11:24,8:24,3
+chr8	12001900	.	C	CTT	0	PASS	DP=48;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:3,4:0,3:3,1
+chr8	12209513	.	C	G	0	PASS	DP=137;GPV=1;SPV=0.040163;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:60,15:28,9:32,6
+chr8	12286375	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:13,3:5,1
+chr8	12442343	.	A	T	0	PASS	DP=65;GPV=1;SPV=0.040934;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:14,2:12,7
+chr8	12522519	.	CTCT	C	0	PASS	DP=187;GPV=1;SPV=0.028869;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:89,20:35,10:54,10
+chr8	12555537	.	C	A	0	PASS	DP=266;GPV=1;SPV=0.049651;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:143:118,25:41,9:77,16
+chr8	12556968	.	G	A	0	PASS	DP=279;GPV=1;SPV=0.036536;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:117,23:67,10:50,13
+chr8	12559343	.	G	A	0	PASS	DP=281;GPV=1;SPV=0.010149;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:157:125,32:59,14:66,18
+chr8	12566962	.	C	G	0	PASS	DP=290;GPV=1;SPV=0.040469;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:155:131,24:64,8:67,16
+chr8	12590428	.	G	A	0	PASS	DP=309;GPV=1;SPV=0.044471;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:157:134,23:58,12:76,11
+chr8	12591444	.	G	A	0	PASS	DP=231;GPV=1;SPV=0.011397;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:94,26:40,11:54,15
+chr8	12774582	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.042981;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:10,5:8,2
+chr8	14948879	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.019247;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:19,9:14,4:5,5
+chr8	15648068	.	C	T	0	PASS	DP=94;GPV=1;SPV=7.0149e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:34,17:20,7:14,10
+chr8	15782334	.	C	T	0	PASS	DP=117;GPV=1;SPV=1.8338e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:51,19:26,9:25,10
+chr8	16122843	.	CT	C	0	PASS	DP=41;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:11,9:4,4
+chr8	16707079	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,2:2,1:4,1
+chr8	16947855	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.079663;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:24,4:11,1
+chr8	18509669	.	G	A	0	PASS	DP=79;GPV=1;SPV=2.8323e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:11,7:16,7
+chr8	21813654	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.046916;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:12,2:16,2
+chr8	22592057	.	T	A	0	PASS	DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:10,2:21,2
+chr8	22860188	.	ATATG	A	0	PASS	DP=93;GPV=1;SPV=0.020178;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:21,1:16,6
+chr8	23374399	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.010763;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:26,4:18,5
+chr8	23652544	.	CCTTCCTTCCTTTCTTT	C	0	PASS	DP=59;GPV=1;SPV=0.017837;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:7,3:13,6
+chr8	25903607	.	G	T	0	PASS	DP=113;GPV=1;SPV=0.00089077;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:21,6:24,3
+chr8	26731248	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.095044;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,5:23,4:4,1
+chr8	28881475	.	GA	G	0	PASS	DP=81;GPV=1;SPV=0.048964;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:44,6:28,2:16,4
+chr8	30046474	.	TAAAAAAA	T	0	PASS	DP=29;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,4:7,2:9,2
+chr8	30089770	.	A	C	0	PASS	DP=82;GPV=1;SPV=0.032967;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:1,2:0,0:1,2
+chr8	30173970	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.016248;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:14,5:16,1
+chr8	30692495	.	C	CT	0	PASS	DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,7:4,5:4,2
+chr8	32389771	.	T	A	0	PASS	DP=83;GPV=1;SPV=0.0030396;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:14,2:17,5
+chr8	32412421	.	TAC	T	0	PASS	DP=41;GPV=1;SPV=0.34673;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,3:13,1:11,2
+chr8	35523578	.	CT	C	0	PASS	DP=54;GPV=1;SPV=0.023028;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:24,9:5,3
+chr8	38574646	.	T	G	0	PASS	DP=112;GPV=1;SPV=0.019217;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:58,7:37,3:21,4
+chr8	39749587	.	G	A	0	PASS	DP=97;GPV=1;SPV=0.036723;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:31,4:20,2
+chr8	40067256	.	TTC	T	0	PASS	DP=48;GPV=1;SPV=0.089038;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:19,3:5,1:14,2
+chr8	40332741	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:14,4:6,1
+chr8	40680701	.	T	C	0	PASS	DP=73;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:15,4:5,3:10,1
+chr8	42203992	.	T	C	0	PASS	DP=60;GPV=1;SPV=0.01549;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,9:8,1:11,8
+chr8	44933113	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:5,2:1,1
+chr8	48746954	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.00018197;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:18,9:21,4
+chr8	49787630	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.00012803;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:22,4:18,11
+chr8	51349171	.	GT	G	0	PASS	DP=98;GPV=1;SPV=0.092709;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:32,4:16,3:16,1
+chr8	54478540	.	C	CTTT	0	PASS	DP=48;GPV=1;SPV=0.010436;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:7,7:10,3
+chr8	55750541	.	C	CTT	0	PASS	DP=43;GPV=1;SPV=0.0033813;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,7:6,1
+chr8	56633257	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,6:5,5:4,1
+chr8	61166136	.	T	A	0	PASS	DP=78;GPV=1;SPV=0.027483;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:14,3:24,3
+chr8	61262000	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.026618;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:21,3:25,7
+chr8	61752495	.	CA	C	0	PASS	DP=49;GPV=1;SPV=0.021168;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:7,4:14,2
+chr8	61752509	.	C	A	0	PASS	DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:5,3:15,1
+chr8	63017600	.	C	A	0	PASS	DP=101;GPV=1;SPV=0.00028775;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:23,6:19,6
+chr8	63166003	.	T	C	0	PASS	DP=94;GPV=1;SPV=3.2412e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:38,17:16,4:22,13
+chr8	63819075	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.00071194;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:15,8:21,3
+chr8	64040802	.	C	A	0	PASS	DP=99;GPV=1;SPV=7.4953e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:34,20:17,11:17,9
+chr8	64549678	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.023574;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:5,6:5,2
+chr8	65596309	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.016761;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,6:5,1:7,5
+chr8	66851018	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.0080832;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:53,9:22,4:31,5
+chr8	67403755	.	A	G	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chr8	67468972	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.00017122;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:19,5:9,5
+chr8	67475817	.	CCTTTCT	C	0	PASS	DP=38;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,6:2,2:12,4
+chr8	68095500	.	AATAC	A	0	PASS	DP=79;GPV=1;SPV=0.012987;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:14,3:17,5
+chr8	68095521	.	A	T	0	PASS	DP=74;GPV=1;SPV=0.016986;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:10,4:17,8
+chr8	68268006	.	T	G	0	PASS	DP=30;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,5:2,2:7,3
+chr8	68525956	.	C	CTT	0	PASS	DP=36;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,4:12,3:8,1
+chr8	70643527	.	T	A	0	PASS	DP=93;GPV=1;SPV=4.5526e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:17,9:18,5
+chr8	72152181	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.014234;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:16,6:14,5
+chr8	73090922	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.00024465;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:24,6:15,7
+chr8	74802578	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.0015192;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:15,3:19,8
+chr8	75287608	.	AAT	A	0	PASS	DP=81;GPV=1;SPV=0.093588;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:26,4:10,3:16,1
+chr8	75584552	.	C	G	0	PASS	DP=83;GPV=1;SPV=0.00019435;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:17,6:11,4
+chr8	75644593	.	A	T	0	PASS	DP=97;GPV=1;SPV=5.4584e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,12:11,8:23,4
+chr8	76731856	.	C	CATTATT	0	PASS	DP=72;GPV=1;SPV=0.0060061;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:12,8:13,3
+chr8	77133292	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:8,4:4,1
+chr8	77473407	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:7,2:3,1:4,1
+chr8	77486236	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:10,3:13,2
+chr8	79683371	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:8,6:3,1
+chr8	80086101	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,6:4,1
+chr8	81980963	.	TATATATA	T	0	PASS	DP=34;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,7:4,3:7,4
+chr8	84151550	.	C	T	0	PASS	DP=114;GPV=1;SPV=0.00027199;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:54,15:36,8:18,7
+chr8	85180511	.	CATATATATATATATAT	C	0	PASS	DP=38;GPV=1;SPV=0.0044521;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:5,10:3,7:2,3
+chr8	85654505	.	G	C	0	PASS	DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:18,3:5,1
+chr8	85657690	.	A	G	0	PASS	DP=733;GPV=1;SPV=0.037764;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:378:331,47:95,18:236,29
+chr8	85741876	.	C	G	0	PASS	DP=812;GPV=1;SPV=0.020207;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:452:399,53:195,28:204,25
+chr8	86162635	.	T	TTA	0	PASS	DP=25;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:4,4:2,1
+chr8	86162674	.	A	ATAATATATAT	0	PASS	DP=29;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:8,4:2,1
+chr8	86162689	.	T	TTA	0	PASS	DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:11,3:3,1
+chr8	86600776	.	ATTTTTT	A	0	PASS	DP=46;GPV=1;SPV=0.039565;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,9:8,5:15,4
+chr8	88749707	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.0014381;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:28,8:20,3:8,5
+chr8	88830408	.	ATATATGTACTATATATGCATGTATGCATC	A	0	PASS	DP=76;GPV=1;SPV=0.024749;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:17,8:22,5
+chr8	88867842	.	ATATATATAGT	A	0	PASS	DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:4,2:4,2
+chr8	89753827	.	T	A	0	PASS	DP=85;GPV=1;SPV=0.053564;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:50,7:26,3:24,4
+chr8	89753830	.	ATATT	A	0	PASS	DP=87;GPV=1;SPV=0.058382;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:52,7:29,3:23,4
+chr8	90202884	.	CTTT	C	0	PASS	DP=43;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:11,8:2,1
+chr8	92631352	.	A	AGT	0	PASS	DP=65;GPV=1;SPV=0.036061;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,12:22,9:10,3
+chr8	95553955	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.098694;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:19,4:12,1
+chr8	95581559	.	G	A	0	PASS	DP=118;GPV=1;SPV=6.5448e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:18,2:26,10
+chr8	95625128	.	C	T	0	PASS	DP=91;GPV=1;SPV=0.0020227;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:18,5:25,6
+chr8	98105121	.	A	C	0	PASS	DP=55;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:7,2:2,1:5,1
+chr8	98115388	.	CAAA	C	0	PASS	DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:6,6:12,2
+chr8	98421016	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.0035237;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:25,6:21,4
+chr8	98680981	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:5,9:5,2
+chr8	98858323	.	T	TATAGAG	0	PASS	DP=32;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:5,6:3,5:2,1
+chr8	101049459	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:0,2:19,3
+chr8	101592100	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.018648;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,5:1,1:2,4
+chr8	102371275	.	T	A	0	PASS	DP=50;GPV=1;SPV=0.060124;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,5:8,4:5,1
+chr8	103059898	.	C	A	0	PASS	DP=66;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:5,3:1,2:4,1
+chr8	103684539	.	TTTTTATTTTATTTTATTTTA	T	0	PASS	DP=64;GPV=1;SPV=0.042981;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,7:6,4:12,3
+chr8	104549400	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.010488;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:9,7:8,5
+chr8	106161086	.	T	A	0	PASS	DP=78;GPV=1;SPV=0.0048593;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:18,5:18,4
+chr8	106704393	.	CTTTTTTTTT	C	0	PASS	DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,5:3,3:6,2
+chr8	106984409	.	G	A	0	PASS	DP=93;GPV=1;SPV=4.5526e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:15,5:20,9
+chr8	107033169	.	A	AAAAAAAAAAG	0	PASS	DP=48;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,7:7,4:7,3
+chr8	108097991	.	AGAAGGAAG	A	0	PASS	DP=37;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:13,3:6,1
+chr8	108098147	.	AGAAGGAAGGAAGGAAG	A	0	PASS	DP=45;GPV=1;SPV=0.17137;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,4:20,1:1,3
+chr8	108614685	.	A	G	0	PASS	DP=106;GPV=1;SPV=4.1184e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:41,14:18,5:23,9
+chr8	109608824	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.00011817;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:21,10:18,3
+chr8	110152082	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:4,2:7,4
+chr8	113537715	.	T	A	0	PASS	DP=81;GPV=1;SPV=0.002391;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:18,4:14,4
+chr8	116366082	.	GGGAAGGAAGGAAGGAA	G	0	PASS	DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:10,6:8,2
+chr8	116752665	.	GAAGAAAGAAAGA	G	0	PASS	DP=58;GPV=1;SPV=0.039029;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:11,3:8,2
+chr8	117920671	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.00018514;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:17,5:14,7
+chr8	120078337	.	CAA	C	0	PASS	DP=66;GPV=1;SPV=0.0049412;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,12:17,8:8,4
+chr8	120920575	.	TTATA	T	0	PASS	DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:16,1:7,4
+chr8	121112767	.	A	G	0	PASS	DP=86;GPV=1;SPV=1.8286e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:33,18:17,10:16,8
+chr8	123702459	.	A	G	0	PASS	DP=102;GPV=1;SPV=1.0881e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,13:15,7:18,6
+chr8	125540475	.	G	A	0	PASS	DP=81;GPV=1;SPV=0.00083722;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:18,5:16,6
+chr8	126196445	.	A	G	0	PASS	DP=98;GPV=1;SPV=1.613e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:40,19:16,13:24,6
+chr8	127817460	.	AAT	A	0	PASS	DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:11,3:11,1
+chr8	129449402	.	G	C	0	PASS	DP=22;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,2:6,2:0,0
+chr8	132409076	.	T	A	0	PASS	DP=104;GPV=1;SPV=9.7521e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:41,18:20,14:21,4
+chr8	133578440	.	AAGAAAAAG	A	0	PASS	DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,2:5,2
+chr8	134113457	.	T	C	0	PASS	DP=79;GPV=1;SPV=0.0034446;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:24,6:11,3
+chr8	134190431	.	GGTTGT	G	0	PASS	DP=117;GPV=1;SPV=0.048023;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:50,13:32,11:18,2
+chr8	134214861	.	C	CT	0	PASS	DP=32;GPV=1;SPV=0.024674;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:9,5:4,4
+chr8	135515365	.	TAAAAAAAA	T	0	PASS	DP=39;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,5:8,4:7,1
+chr8	135645992	.	ATTT	A	0	PASS	DP=43;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,4:11,2:6,2
+chr8	135782500	.	C	A	0	PASS	DP=103;GPV=1;SPV=6.0337e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:17,5:20,7
+chr8	137237914	.	G	T	0	PASS	DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:16,3:14,1
+chr8	137433570	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.0011997;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:19,5:22,4
+chr8	137569743	.	T	A	0	PASS	DP=91;GPV=1;SPV=0.00084558;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,12:22,8:19,4
+chr8	140033660	.	T	TTTTTG	0	PASS	DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:6,1:15,4
+chr8	140902036	.	T	A	0	PASS	DP=96;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:6,3:3,1:3,2
+chr8	141540940	.	C	CACAG	0	PASS	DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:13,3:18,1
+chr8	142760623	.	C	A	0	PASS	DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:4,2:1,1
+chr8	142887418	.	G	C	0	PASS	DP=69;GPV=1;SPV=0.038264;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:17,6:7,1
+chr8	143908400	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.00031571;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:21,3:14,7
+chr8	144188449	.	ATTTTT	A	0	PASS	DP=39;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:1,0:12,4
+chr9	400004	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,3:5,1
+chr9	528469	.	CT	C	0	PASS	DP=18;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:5,3:1,1
+chr9	932654	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.001805;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:18,6:20,5
+chr9	1551518	.	C	CT	0	PASS	DP=102;GPV=1;SPV=1.467e-06;SS=2;SSC=58;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:17,5:14,10
+chr9	4465756	.	A	T	0	PASS	DP=72;GPV=1;SPV=0.0096404;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:38,11:13,3:25,8
+chr9	4857407	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.0017262;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:14,5:17,3
+chr9	5919543	.	A	AACACACACACACACACACAC	0	PASS	DP=34;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,6:8,4:2,2
+chr9	6179458	.	T	C	0	PASS	DP=104;GPV=1;SPV=0.01818;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:53,7:35,5:18,2
+chr9	9034725	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.0016349;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,10:16,4:22,6
+chr9	9158600	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.0040567;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:26,4:13,4
+chr9	11399613	.	A	G	0	PASS	DP=84;GPV=1;SPV=0.0040654;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:19,6:17,2
+chr9	12019965	.	G	A	0	PASS	DP=117;GPV=1;SPV=5.0519e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:49,15:29,4:20,11
+chr9	12038241	.	G	T	0	PASS	DP=78;GPV=1;SPV=7.9911e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,13:19,3:9,10
+chr9	12386854	.	CATATAT	C	0	PASS	DP=26;GPV=1;SPV=0.25826;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:8,2:2,2
+chr9	14768275	.	A	T	0	PASS	DP=79;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:42:1,4:0,0:1,4
+chr9	15345467	.	C	A	0	PASS	DP=87;GPV=1;SPV=0.054832;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:25,5:13,2:12,3
+chr9	15363370	.	CAT	C	0	PASS	DP=28;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:5,7:5,1
+chr9	15534643	.	T	A	0	PASS	DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:21,3:10,9
+chr9	16367422	.	A	ATT	0	PASS	DP=33;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:6,2:5,2
+chr9	17608147	.	C	CTTT	0	PASS	DP=39;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,8:2,4:5,4
+chr9	18283607	.	T	TAA	0	PASS	DP=30;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,6:5,4:3,2
+chr9	22361749	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.0022864;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:15,3:21,5
+chr9	22753409	.	C	CA	0	PASS	DP=50;GPV=1;SPV=0.00071247;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:16,11:2,1
+chr9	22830913	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,4:18,3:7,1
+chr9	22905412	.	AT	A	0	PASS	DP=85;GPV=1;SPV=8.9917e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:21,11:12,3
+chr9	23159451	.	C	G	0	PASS	DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:5,2:6,4
+chr9	23228610	.	G	GA	0	PASS	DP=74;GPV=1;SPV=0.017057;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,16:20,12:10,4
+chr9	23289832	.	CAA	C	0	PASS	DP=60;GPV=1;SPV=0.115;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:24,4:10,1
+chr9	23627441	.	GTATATATATATATA	G	0	PASS	DP=32;GPV=1;SPV=0.0045822;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:5,9:5,3
+chr9	24471382	.	C	T	0	PASS	DP=94;GPV=1;SPV=4.6702e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:34,13:16,6:18,7
+chr9	24609154	.	A	AT	0	PASS	DP=60;GPV=1;SPV=0.0048907;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:11,9:17,2
+chr9	25012710	.	A	T	0	PASS	DP=91;GPV=1;SPV=5.8151e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:18,6:18,9
+chr9	25460823	.	C	CAAAAAAAAA	0	PASS	DP=83;GPV=1;SPV=0.035008;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,10:21,9:12,1
+chr9	25552600	.	T	A	0	PASS	DP=83;GPV=1;SPV=0.00018501;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,15:18,10:17,5
+chr9	26003300	.	G	A	0	PASS	DP=96;GPV=1;SPV=7.3924e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:38,14:22,7:16,7
+chr9	26121984	.	C	A	0	PASS	DP=106;GPV=1;SPV=1.5702e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:41,16:19,9:22,7
+chr9	27875868	.	AAC	A	0	PASS	DP=58;GPV=1;SPV=0.0049255;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,9:13,5:12,4
+chr9	27880014	.	G	A	0	PASS	DP=134;GPV=1;SPV=7.2274e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:52,16:30,8:22,8
+chr9	28848160	.	ATATAGT	A	0	PASS	DP=26;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:12,3:8,2:4,1
+chr9	29024836	.	G	A	0	PASS	DP=94;GPV=1;SPV=1.9604e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:18,6:15,8
+chr9	29085281	.	T	TA	0	PASS	DP=35;GPV=1;SPV=0.33771;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,4:14,3:6,1
+chr9	32165011	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.00041078;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:17,7:15,4
+chr9	32601670	.	T	A	0	PASS	DP=101;GPV=1;SPV=0.0001031;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:18,4:22,9
+chr9	34416213	.	A	T	0	PASS	DP=34;GPV=1;SPV=0.029588;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,10:8,9:4,1
+chr9	35333964	.	G	T	0	PASS	DP=88;GPV=1;SPV=0.036676;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:17,4:12,2:5,2
+chr9	36156385	.	TAA	T	0	PASS	DP=39;GPV=1;SPV=0.044451;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:12,8:4,3
+chr9	36792753	.	CCA	C	0	PASS	DP=74;GPV=1;SPV=0.028317;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:24,5:12,1
+chr9	38460772	.	CTTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:9,3:3,1
+chr9	38989371	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.051196;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:18,3:16,3
+chr9	39054976	.	C	T	0	PASS	DP=110;GPV=1;SPV=0.042295;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:60,10:32,7:28,3
+chr9	39584585	.	A	AAAAAAAG	0	PASS	DP=146;GPV=1;SPV=0.02264;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:68,8:36,4:32,4
+chr9	39796987	.	T	A	0	PASS	DP=52;GPV=1;SPV=0.054403;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:11,1:16,5
+chr9	40040894	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:16,4:5,2
+chr9	40068507	.	C	T	0	PASS	DP=84;GPV=1;SPV=0.039226;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:24,5:13,2
+chr9	40200174	.	GTTTT	G	0	PASS	DP=112;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:44,16:24,10:20,6
+chr9	40516774	.	T	C	0	PASS	DP=43;GPV=1;SPV=0.039259;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:7,3:9,1
+chr9	40731686	.	A	AT	0	PASS	DP=81;GPV=1;SPV=0.025396;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,6:15,1:23,5
+chr9	40804756	.	C	CCTTT	0	PASS	DP=57;GPV=1;SPV=0.015839;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,11:8,3:14,8
+chr9	40851579	.	A	G	0	PASS	DP=107;GPV=1;SPV=0.012703;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:47,6:18,3:29,3
+chr9	40960658	.	A	T	0	PASS	DP=240;GPV=1;SPV=0.037876;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:115,25:58,18:57,7
+chr9	40973717	.	G	A	0	PASS	DP=316;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:173:155,18:76,13:79,5
+chr9	40979805	.	TAA	T	0	PASS	DP=386;GPV=1;SPV=0.047842;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:227:202,25:114,13:88,12
+chr9	40995624	.	G	C	0	PASS	DP=151;GPV=1;SPV=0.0046679;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:76,9:57,8:19,1
+chr9	41075176	.	TGTGTAC	T	0	PASS	DP=94;GPV=1;SPV=0.029296;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,13:13,3:24,10
+chr9	41112893	.	A	T	0	PASS	DP=64;GPV=1;SPV=0.036359;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,9:10,8:15,1
+chr9	41203255	.	G	A	0	PASS	DP=168;GPV=1;SPV=0.042316;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:70,9:29,3:41,6
+chr9	41204487	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:6,3:8,2
+chr9	41221222	.	G	A	0	PASS	DP=393;GPV=1;SPV=0.010139;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:203:172,31:104,19:68,12
+chr9	41253107	.	G	C	0	PASS	DP=217;GPV=1;SPV=0.0010047;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:99,16:47,7:52,9
+chr9	41275062	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.0041548;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:7,7:24,7
+chr9	41275865	.	C	T	0	PASS	DP=324;GPV=1;SPV=0.008596;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:144,22:59,6:85,16
+chr9	41326243	.	A	C	0	PASS	DP=76;GPV=1;SPV=0.018267;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:17,3:13,11
+chr9	41338692	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.0096193;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:20,10:12,3
+chr9	41460901	.	G	T	0	PASS	DP=89;GPV=1;SPV=0.041853;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:15,1:25,6
+chr9	41460991	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.0016204;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:4,2:20,10
+chr9	41482510	.	T	A	0	PASS	DP=105;GPV=1;SPV=0.033965;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:53,9:20,3:33,6
+chr9	41501442	.	T	C	0	PASS	DP=68;GPV=1;SPV=0.026137;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:11,6:16,4
+chr9	41717094	.	A	AT	0	PASS	DP=141;GPV=1;SPV=0.022536;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:58,13:37,5:21,8
+chr9	41920840	.	G	A	0	PASS	DP=209;GPV=1;SPV=0.0053225;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:97,28:60,18:37,10
+chr9	41932622	.	C	T	0	PASS	DP=197;GPV=1;SPV=0.0060414;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:79,25:41,9:38,16
+chr9	42187574	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.026125;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:18,2:9,6
+chr9	42189883	.	T	C	0	PASS	DP=120;GPV=1;SPV=0.021814;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:59,17:33,9:26,8
+chr9	43005960	.	A	T	0	PASS	DP=170;GPV=1;SPV=0.02464;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:76,16:50,5:26,11
+chr9	43034421	.	G	A	0	PASS	DP=142;GPV=1;SPV=0.04063;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:72,8:33,2:39,6
+chr9	43040612	.	T	C	0	PASS	DP=118;GPV=1;SPV=0.017696;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:44,14:29,11:15,3
+chr9	43319585	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.0013404;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:27,5:17,7
+chr9	43435546	.	T	G	0	PASS	DP=157;GPV=1;SPV=0.03335;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:70,13:62,11:8,2
+chr9	43497226	.	T	G	0	PASS	DP=139;GPV=1;SPV=0.019473;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:63,8:42,3:21,5
+chr9	43555952	.	C	T	0	PASS	DP=265;GPV=1;SPV=0.046991;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:145:122,23:93,19:29,4
+chr9	43657784	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:15,1:6,4
+chr9	43737971	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr9	44129620	.	G	A	0	PASS	DP=387;GPV=1;SPV=0.028788;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:191,26:132,23:59,3
+chr9	44310318	.	A	C	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr9	44414745	.	T	C	0	PASS	DP=199;GPV=1;SPV=0.019624;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:90,14:23,3:67,11
+chr9	44843023	.	A	G	0	PASS	DP=132;GPV=1;SPV=0.016542;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:62,19:56,2:6,17
+chr9	44895497	.	G	C	0	PASS	DP=467;GPV=1;SPV=0.010463;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:255:219,36:140,29:79,7
+chr9	44934534	.	T	A	0	PASS	DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:4,2:11,2
+chr9	45123799	.	G	C	0	PASS	DP=455;GPV=1;SPV=0.006184;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:239:215,24:123,12:92,12
+chr9	45374360	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:29,4:1,0
+chr9	45419343	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.025685;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:2,8:12,1
+chr9	60610139	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:1,0:22,4
+chr9	61161872	.	T	G	0	PASS	DP=43;GPV=1;SPV=0.0091926;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:6,9:9,2
+chr9	61915782	.	G	T	0	PASS	DP=90;GPV=1;SPV=0.017906;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:45,7:19,1:26,6
+chr9	62099604	.	C	T	0	PASS	DP=19;GPV=1;SPV=0.0011775;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:1,10:0,2:1,8
+chr9	62800114	.	C	T	0	PASS	DP=487;GPV=1;SPV=0.031305;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:279:240,39:124,15:116,24
+chr9	62802278	.	C	T	0	PASS	DP=480;GPV=1;SPV=0.043145;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:254:215,39:100,14:115,25
+chr9	62811764	.	T	C	0	PASS	DP=310;GPV=1;SPV=0.025293;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:164:139,25:62,13:77,12
+chr9	62826395	.	G	C	0	PASS	DP=253;GPV=1;SPV=0.02156;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:143:127,16:69,2:58,14
+chr9	62835638	.	G	C	0	PASS	DP=296;GPV=1;SPV=0.01712;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:169:150,19:79,6:71,13
+chr9	62840770	.	G	C	0	PASS	DP=341;GPV=1;SPV=0.0035057;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:190:164,26:39,6:125,20
+chr9	62841157	.	A	T	0	PASS	DP=258;GPV=1;SPV=0.033344;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:110,21:55,5:55,16
+chr9	62885216	.	C	T	0	PASS	DP=94;GPV=1;SPV=0.0432;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:14,3:26,8
+chr9	62904052	.	G	A	0	PASS	DP=83;GPV=1;SPV=0.023646;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:19,8:9,1
+chr9	62905632	.	TC	T	0	PASS	DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:31,4:0,0
+chr9	63345898	.	T	G	0	PASS	DP=115;GPV=1;SPV=0.01398;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:43,15:16,7:27,8
+chr9	63757194	.	C	T	0	PASS	DP=106;GPV=1;SPV=0.00082552;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:51,13:32,9:19,4
+chr9	63812339	.	C	T	0	PASS	DP=117;GPV=1;SPV=0.032541;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:51,9:28,4:23,5
+chr9	63819760	.	G	T	0	PASS	DP=567;GPV=1;SPV=0.014374;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:300:261,39:120,23:141,16
+chr9	63861709	.	C	A	0	PASS	DP=263;GPV=1;SPV=0.015469;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:112,28:35,7:77,21
+chr9	63861710	.	A	G	0	PASS	DP=260;GPV=1;SPV=0.023576;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:139:112,27:39,7:73,20
+chr9	63870056	.	A	G	0	PASS	DP=131;GPV=1;SPV=0.020167;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:51,12:33,7:18,5
+chr9	63870158	.	G	A	0	PASS	DP=129;GPV=1;SPV=0.021202;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:57,10:31,3:26,7
+chr9	63870195	.	CT	C	0	PASS	DP=118;GPV=1;SPV=0.014363;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:51,6:29,1:22,5
+chr9	64077123	.	C	CA	0	PASS	DP=55;GPV=1;SPV=0.03931;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,12:16,10:3,2
+chr9	64107800	.	C	A	0	PASS	DP=400;GPV=1;SPV=0.046046;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:209:182,27:90,18:92,9
+chr9	64375598	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.010536;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:8,4:11,9
+chr9	64386168	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:17,4:3,1
+chr9	64469826	.	C	CTTTT	0	PASS	DP=35;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,4:4,1:3,3
+chr9	64492136	.	C	A	0	PASS	DP=75;GPV=1;SPV=0.041089;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:10,7:17,2
+chr9	64493849	.	T	C	0	PASS	DP=91;GPV=1;SPV=0.041004;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:36,2:8,3
+chr9	64682117	.	G	T	0	PASS	DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:0,5:3,1
+chr9	65256879	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.015873;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:0,1:16,7
+chr9	65269468	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.3426;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:19,3:16,2:3,1
+chr9	65287393	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.0019324;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:2,4:4,3
+chr9	65653714	.	T	G	0	PASS	DP=247;GPV=1;SPV=0.017356;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:128:109,19:62,13:47,6
+chr9	65936253	.	A	C	0	PASS	DP=152;GPV=1;SPV=0.049277;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:65,13:30,7:35,6
+chr9	65967821	.	G	T	0	PASS	DP=118;GPV=1;SPV=0.03329;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:53,12:23,5:30,7
+chr9	66031944	.	T	C	0	PASS	DP=169;GPV=1;SPV=0.0014401;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:71,23:40,12:31,11
+chr9	66042285	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:3,3:7,2
+chr9	66171597	.	T	C	0	PASS	DP=186;GPV=1;SPV=0.049508;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:75,16:38,9:37,7
+chr9	66171811	.	T	A	0	PASS	DP=135;GPV=1;SPV=0.018795;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:52,16:26,9:26,7
+chr9	66176323	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.027751;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:7,1:2,4
+chr9	66220831	.	C	T	0	PASS	DP=172;GPV=1;SPV=0.031662;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:79,16:42,9:37,7
+chr9	66354771	.	AAAGG	A	0	PASS	DP=38;GPV=1;SPV=0.26573;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,4:1,0:22,4
+chr9	66356240	.	G	GT	0	PASS	DP=46;GPV=1;SPV=0.016558;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,6:11,1:6,5
+chr9	66738566	.	G	T	0	PASS	DP=94;GPV=1;SPV=0.024045;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:21,8:19,2
+chr9	66886167	.	A	ATT	0	PASS	DP=55;GPV=1;SPV=0.038251;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:12,4:9,7
+chr9	67126309	.	A	C	0	PASS	DP=132;GPV=1;SPV=0.00032488;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:61,13:34,8:27,5
+chr9	67505891	.	A	T	0	PASS	DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:5,8:3,1
+chr9	67616303	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.023721;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:6,2:18,3
+chr9	67749642	.	G	T	0	PASS	DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:0,0:12,4
+chr9	67778907	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.028868;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:6,3:28,4
+chr9	67810124	.	A	T	0	PASS	DP=171;GPV=1;SPV=0.020503;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:73,9:35,7:38,2
+chr9	67897767	.	G	GT	0	PASS	DP=70;GPV=1;SPV=0.064244;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:15,1:17,3
+chr9	68235379	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.047588;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,10:16,6:19,4
+chr9	68257015	.	GGTTTTTT	G	0	PASS	DP=19;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:2,1:2,1
+chr9	68263305	.	G	T	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,0:8,4
+chr9	68293018	.	C	G	0	PASS	DP=63;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:34,4:1,0
+chr9	68302441	.	C	A	0	PASS	DP=37;GPV=1;SPV=0.02545;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:9,5:3,2
+chr9	68331415	.	C	T	0	PASS	DP=110;GPV=1;SPV=0.027329;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:60,7:28,5:32,2
+chr9	68331508	.	A	G	0	PASS	DP=126;GPV=1;SPV=0.03356;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:65,9:21,2:44,7
+chr9	68356290	.	C	T	0	PASS	DP=99;GPV=1;SPV=0.044109;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:26,7:18,2
+chr9	70505606	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.011214;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:18,1:19,9
+chr9	70505607	.	CT	C	0	PASS	DP=65;GPV=1;SPV=0.11654;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:15,1:23,4
+chr9	71928186	.	CAAAAAAAA	C	0	PASS	DP=43;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:6,15:3,13:3,2
+chr9	74549551	.	A	G	0	PASS	DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,3:5,3:0,0
+chr9	74847168	.	T	G	0	PASS	DP=100;GPV=1;SPV=0.00019647;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:40,12:21,6:19,6
+chr9	76351610	.	GA	G	0	PASS	DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:18,2:6,3
+chr9	77431748	.	G	A	0	PASS	DP=113;GPV=1;SPV=3.6348e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:44,19:21,10:23,9
+chr9	77951092	.	C	CTT	0	PASS	DP=45;GPV=1;SPV=0.019062;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,5:6,4:6,1
+chr9	79516885	.	C	CA	0	PASS	DP=74;GPV=1;SPV=0.064152;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:19,2:15,2
+chr9	79516891	.	G	A	0	PASS	DP=83;GPV=1;SPV=0.024282;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:15,6:9,3:6,3
+chr9	79845036	.	C	A	0	PASS	DP=95;GPV=1;SPV=0.00017085;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:17,5:18,6
+chr9	80682810	.	G	GTGTGTACATA	0	PASS	DP=86;GPV=1;SPV=0.0012204;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:25,17:15,7:10,10
+chr9	80758140	.	CACAT	C	0	PASS	DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:6,2:10,2
+chr9	81017974	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.00035994;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:15,5:14,7
+chr9	81082749	.	TTC	T	0	PASS	DP=44;GPV=1;SPV=0.020884;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,9:6,1:10,8
+chr9	82276208	.	A	G	0	PASS	DP=74;GPV=1;SPV=0.013935;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:15,6:15,6
+chr9	83158653	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,4:17,2:13,2
+chr9	83378261	.	G	GT	0	PASS	DP=56;GPV=1;SPV=0.014733;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:16,15:4,11:12,4
+chr9	84773759	.	A	C	0	PASS	DP=92;GPV=1;SPV=0.00042036;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:21,4:16,7
+chr9	84797611	.	A	T	0	PASS	DP=20;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,2:0,0:6,2
+chr9	84924229	.	TAGAAAGAA	T	0	PASS	DP=67;GPV=1;SPV=0.0010569;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,16:13,10:9,6
+chr9	85219269	.	T	A	0	PASS	DP=95;GPV=1;SPV=0.0052387;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:43,8:18,3:25,5
+chr9	85259866	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:6,1:7,6
+chr9	87183343	.	G	T	0	PASS	DP=108;GPV=1;SPV=0.00025363;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:45,12:20,6:25,6
+chr9	88136022	.	C	G	0	PASS	DP=119;GPV=1;SPV=0.020238;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:58,17:31,7:27,10
+chr9	88178055	.	C	A	0	PASS	DP=70;GPV=1;SPV=0.039403;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,10:6,2:17,8
+chr9	88423726	.	AT	A	0	PASS	DP=63;GPV=1;SPV=0.0034815;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:29,14:17,10:12,4
+chr9	90352561	.	A	T	0	PASS	DP=103;GPV=1;SPV=1.2761e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:33,21:18,12:15,9
+chr9	91372933	.	T	TTTG	0	PASS	DP=38;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,4:3,1:9,3
+chr9	92156756	.	A	G	0	PASS	DP=87;GPV=1;SPV=0.03611;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:16,2:14,8
+chr9	96165262	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.014087;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:23,3:18,3
+chr9	96456759	.	CAAAAA	C	0	PASS	DP=24;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:2,3:2,1
+chr9	97946938	.	G	A	0	PASS	DP=101;GPV=1;SPV=2.6269e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:43,19:20,13:23,6
+chr9	98246667	.	TC	T	0	PASS	DP=104;GPV=1;SPV=0.00032303;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:44,12:19,9:25,3
+chr9	98729589	.	C	T	0	PASS	DP=96;GPV=1;SPV=0.0056752;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:44,8:19,5:25,3
+chr9	100973502	.	A	C	0	PASS	DP=30;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:14:0,2:0,0:0,2
+chr9	102747129	.	A	T	0	PASS	DP=88;GPV=1;SPV=7.4988e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:21,9:13,5
+chr9	102910576	.	A	T	0	PASS	DP=82;GPV=1;SPV=0.0001091;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:14,8:18,6
+chr9	103157090	.	AT	A	0	PASS	DP=88;GPV=1;SPV=1.6127e-05;SS=2;SSC=47;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:14,7:17,8
+chr9	103157095	.	A	T	0	PASS	DP=85;GPV=1;SPV=3.0255e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:13,6:17,8
+chr9	103168002	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.007985;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:50,9:22,7:28,2
+chr9	103739609	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:2,1:11,3
+chr9	109332155	.	T	A	0	PASS	DP=68;GPV=1;SPV=0.033265;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,6:8,3:5,3
+chr9	109510558	.	TAAAA	T	0	PASS	DP=57;GPV=1;SPV=0.059209;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,5:11,1:15,4
+chr9	110245653	.	TA	T	0	PASS	DP=26;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:1,3:1,1:0,2
+chr9	111153004	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.0022504;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,13:10,10:2,3
+chr9	111985797	.	G	T	0	PASS	DP=94;GPV=1;SPV=0.00032727;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:21,8:16,3
+chr9	112161821	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:7,4:5,1:2,3
+chr9	112290707	.	T	TACACACACAA	0	PASS	DP=50;GPV=1;SPV=0.011333;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,11:5,4:11,7
+chr9	112477701	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:22,5:17,6
+chr9	112775542	.	T	TTGTGTGTGTG	0	PASS	DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:12,3:5,2
+chr9	113248462	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:3,4:3,1
+chr9	114496542	.	A	C	0	PASS	DP=83;GPV=1;SPV=0.020919;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:22,6:8,5:14,1
+chr9	114949683	.	C	CTT	0	PASS	DP=51;GPV=1;SPV=0.080194;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,5:5,2:21,3
+chr9	114949709	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.020314;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:1,3:17,5
+chr9	115298062	.	CAAA	C	0	PASS	DP=47;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,5:12,1:9,4
+chr9	116141871	.	T	TGGAAGGAA	0	PASS	DP=37;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,5:7,4:7,1
+chr9	119043947	.	A	T	0	PASS	DP=80;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:26,4:13,1:13,3
+chr9	121002240	.	ATATGTATATATATG	A	0	PASS	DP=49;GPV=1;SPV=0.012978;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:12,3:10,5
+chr9	122391368	.	T	TAC	0	PASS	DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:9,2:7,2
+chr9	123848228	.	TAA	T	0	PASS	DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:13,3:5,1
+chr9	123946971	.	AT	A	0	PASS	DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,1:7,3
+chr9	125126591	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.025527;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:16,4:6,1
+chr9	125368651	.	TTA	T	0	PASS	DP=40;GPV=1;SPV=0.024893;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,10:7,5:7,5
+chr9	126043190	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.00025457;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:17,5:15,7
+chr9	126720734	.	T	TA	0	PASS	DP=75;GPV=1;SPV=0.013592;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:18,2:17,5
+chr9	128830632	.	CTTTTTTTTTTTTTTTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.0036482;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,9:5,2:1,7
+chr9	129493970	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.0091766;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:14,4:3,1
+chr9	130334549	.	G	GTT	0	PASS	DP=57;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:10,11:6,9:4,2
+chr9	130955308	.	G	T	0	PASS	DP=21;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,6:0,5:3,1
+chr9	131462836	.	T	TAAAA	0	PASS	DP=30;GPV=1;SPV=0.040316;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:4,2:1,2
+chr9	132313931	.	T	G	0	PASS	DP=101;GPV=1;SPV=0.11505;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:31,4:22,2:9,2
+chr9	132708087	.	AAGAAAG	A	0	PASS	DP=60;GPV=1;SPV=0.027472;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,9:10,3:10,6
+chr9	132964743	.	CT	C	0	PASS	DP=47;GPV=1;SPV=0.0036125;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,6:4,2:3,4
+chr9	134679626	.	C	T	0	PASS	DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr9	135125996	.	GT	G	0	PASS	DP=92;GPV=1;SPV=0.043084;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:16,1:29,4
+chr9	136452449	.	CAAAAA	C	0	PASS	DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:11,9:5,1
+chr9	136802875	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,4:4,3:23,1
+chr9	137323590	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.022631;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:27,12:24,10:3,2
+chr9	137379006	.	A	G	0	PASS	DP=28;GPV=1;SPV=0.23663;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:4,1:12,3
+chr9	138218119	.	T	C	0	PASS	DP=99;GPV=1;SPV=0.046765;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:58,7:35,6:23,1
+chrM	4201	.	G	A	0	PASS	DP=14053;GPV=1;SPV=0;SS=2;SSC=255;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:7031:5235,1795:2022,765:3213,1030
+chrX	3092212	.	G	C	0	PASS	DP=57;GPV=1;SPV=0.029045;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:8,4:14,3
+chrX	3309177	.	A	AAT	0	PASS	DP=52;GPV=1;SPV=0.00068379;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:10,8:9,4
+chrX	3659728	.	TG	T	0	PASS	DP=33;GPV=1;SPV=0.10909;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:2,2:0,1:2,1
+chrX	4121774	.	T	TCTC	0	PASS	DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:7,1:10,3
+chrX	7992178	.	T	TTCTC	0	PASS	DP=20;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:0,4:3,1
+chrX	9313051	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:0,4:0,4:0,0
+chrX	9411434	.	G	C	0	PASS	DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:12,3:18,1
+chrX	13675572	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:14,2:10,2
+chrX	14545758	.	C	T	0	PASS	DP=51;GPV=1;SPV=1.7034e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:6,7:6,5
+chrX	18214152	.	G	A	0	PASS	DP=49;GPV=1;SPV=4.9037e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:11,15:7,7:4,8
+chrX	21331652	.	C	T	0	PASS	DP=42;GPV=1;SPV=0.00017618;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,15:6,8:6,7
+chrX	22690043	.	A	T	0	PASS	DP=50;GPV=1;SPV=2.9309e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:5,7:8,6
+chrX	26425516	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.00012264;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:6,3:5,8
+chrX	27042819	.	TA	T	0	PASS	DP=42;GPV=1;SPV=9.7816e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:6,6:5,7
+chrX	27096437	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:19:0,2:0,0:0,2
+chrX	28945905	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.068336;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:11,2:10,3
+chrX	33412878	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:14,4:14,2
+chrX	34032854	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.00010021;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,11:4,7:5,4
+chrX	38518516	.	C	CT	0	PASS	DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:12,5:7,1
+chrX	44125010	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,4:1,0
+chrX	44616563	.	G	T	0	PASS	DP=37;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:3,2:3,2:0,0
+chrX	45302124	.	G	T	0	PASS	DP=36;GPV=1;SPV=0.19342;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:14,3:8,3
+chrX	46037998	.	GATATATAT	G	0	PASS	DP=29;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,12:4,3:3,9
+chrX	46917834	.	C	CCTCT	0	PASS	DP=17;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,5:2,3:0,2
+chrX	48779797	.	T	C	0	PASS	DP=52;GPV=1;SPV=4.5999e-09;SS=2;SSC=83;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,17:6,8:0,9
+chrX	51692739	.	A	ACGCG	0	PASS	DP=27;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:7,3:1,5
+chrX	53078022	.	C	G	0	PASS	DP=52;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:25:1,4:1,3:0,1
+chrX	53463626	.	T	TTCTTCTTTCTA	0	PASS	DP=47;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,4:8,1:12,3
+chrX	55940070	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.0033075;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,6:5,2
+chrX	59031791	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.0050575;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,5:2,1
+chrX	61711362	.	G	C	0	PASS	DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:0,0:11,4
+chrX	72049295	.	G	A	0	PASS	DP=53;GPV=1;SPV=4.8084e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,15:6,7:10,8
+chrX	79631705	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.0010246;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:6,5:9,5
+chrX	80453521	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.00053602;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:7,7:2,5
+chrX	82060681	.	C	CTCT	0	PASS	DP=40;GPV=1;SPV=0.13462;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:18,3:6,2:12,1
+chrX	82593914	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.095675;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:18,2:12,4
+chrX	83754213	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.063124;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:19,2:16,3
+chrX	87257915	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.003412;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:7,3:9,5
+chrX	87796085	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.00013922;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:8,5:5,5
+chrX	88491057	.	G	T	0	PASS	DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:6,1:7,5
+chrX	88811126	.	C	T	0	PASS	DP=53;GPV=1;SPV=2.0919e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,15:3,9:6,6
+chrX	90203941	.	C	CTCTTTCTT	0	PASS	DP=30;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,6:2,2:4,4
+chrX	91286984	.	C	A	0	PASS	DP=52;GPV=1;SPV=7.3793e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:8,3:6,8
+chrX	91807176	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:13,4:3,1
+chrX	91893509	.	C	T	0	PASS	DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:7,5:6,6
+chrX	93083071	.	ATTTTAT	A	0	PASS	DP=45;GPV=1;SPV=0.051203;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:13,1:7,5
+chrX	93083081	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.02299;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:14,1:10,5
+chrX	97016615	.	A	T	0	PASS	DP=47;GPV=1;SPV=1.3047e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:3,6:8,8
+chrX	100214822	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:1,2:0,1:1,1
+chrX	100501914	.	A	G	0	PASS	DP=26;GPV=1;SPV=0.26154;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:14,3:10,1:4,2
+chrX	107347815	.	A	AT	0	PASS	DP=32;GPV=1;SPV=0.0071858;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:3,4:8,4
+chrX	107623602	.	C	T	0	PASS	DP=33;GPV=1;SPV=0.035315;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:4,3:11,5
+chrX	110091519	.	T	C	0	PASS	DP=40;GPV=1;SPV=3.3228e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:6,12:3,7:3,5
+chrX	110912416	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,2:5,1:1,1
+chrX	111269239	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.001265;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,14:9,5:7,9
+chrX	111766846	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.0014461;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:8,5:2,3
+chrX	116312761	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:12,3:12,1
+chrX	117350431	.	T	A	0	PASS	DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:7,2:9,4
+chrX	117350432	.	A	T	0	PASS	DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:6,2:9,3
+chrX	118009278	.	G	T	0	PASS	DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:9,3:10,1
+chrX	123694621	.	A	G	0	PASS	DP=43;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:0,2:0,1:0,1
+chrX	123916752	.	AAGTT	A	0	PASS	DP=27;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,2:3,3
+chrX	124536737	.	G	A	0	PASS	DP=48;GPV=1;SPV=8.1543e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:7,17:4,8:3,9
+chrX	126872642	.	T	G	0	PASS	DP=39;GPV=1;SPV=0.0023473;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:3,4:10,5
+chrX	126945081	.	A	C	0	PASS	DP=31;GPV=1;SPV=0.1839;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,5:3,2:9,3
+chrX	126945083	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.2066;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:10,4:2,2:8,2
+chrX	127531176	.	TGTA	T	0	PASS	DP=31;GPV=1;SPV=0.0041657;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:4,3:6,8
+chrX	127921041	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:28:1,4:1,1:0,3
+chrX	128936893	.	GTA	G	0	PASS	DP=29;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,2:3,1:0,1
+chrX	129599558	.	C	G	0	PASS	DP=42;GPV=1;SPV=1.5459e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,14:2,5:7,9
+chrX	130732698	.	T	TCA	0	PASS	DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:8,2:9,2
+chrX	139415082	.	A	T	0	PASS	DP=47;GPV=1;SPV=5.8711e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,14:4,5:9,9
+chrX	147897926	.	T	A	0	PASS	DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:10,1:7,3
+chrX	152244389	.	G	A	0	PASS	DP=50;GPV=1;SPV=8.2699e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,14:7,6:8,8
+chrX	153679546	.	T	TTTTTC	0	PASS	DP=23;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:2,2:9,2
+chrX	154888408	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,4:8,2:8,2
+chrX	155051710	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.0042541;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:11,5:7,4
+chrY	3056481	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:8,2:14,2
+chrY	3309359	.	C	A	0	PASS	DP=60;GPV=1;SPV=0.091905;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:17,1:16,4
+chrY	3773083	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,2:0,1:6,1
+chrY	3795271	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.073354;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,2:14,2
+chrY	3809249	.	C	G	0	PASS	DP=54;GPV=1;SPV=4.3264e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,15:9,10:4,5
+chrY	4571151	.	C	T	0	PASS	DP=67;GPV=1;SPV=5.6034e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:15,20:9,10:6,10
+chrY	4616746	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:14,2:13,3
+chrY	4631875	.	T	C	0	PASS	DP=48;GPV=1;SPV=0.073845;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:14,1:12,5
+chrY	5682239	.	GTTTTT	G	0	PASS	DP=18;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:4,1:1,1
+chrY	6718333	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.023207;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,1:12,4
+chrY	8465534	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,2:5,3
+chrY	9196507	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.0004971;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:5,4:4,4
+chrY	9462573	.	G	C	0	PASS	DP=305;GPV=1;SPV=0.040288;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:150:133,17:52,5:81,12
+chrY	9469163	.	G	A	0	PASS	DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:1,0:10,4
+chrY	10065090	.	C	T	0	PASS	DP=49;GPV=1;SPV=5.941e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:4,6:10,8
+chrY	10669371	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.23636;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:11,3:8,2:3,1
+chrY	11123549	.	CT	C	0	PASS	DP=258;GPV=1;SPV=0.0092257;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:121:96,25:54,13:42,12
+chrY	11161812	.	T	A	0	PASS	DP=158;GPV=1;SPV=0.028338;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:73,12:41,9:32,3
+chrY	11193193	.	C	A	0	PASS	DP=183;GPV=1;SPV=0.045127;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:77,14:35,5:42,9
+chrY	11222315	.	T	C	0	PASS	DP=618;GPV=1;SPV=0.012111;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:324:285,39:156,20:129,19
+chrY	11240134	.	T	C	0	PASS	DP=820;GPV=1;SPV=0.018731;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:432:380,52:202,25:178,27
+chrY	11250509	.	C	T	0	PASS	DP=122;GPV=1;SPV=0.0094467;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:51,11:26,4:25,7
+chrY	11259114	.	T	A	0	PASS	DP=110;GPV=1;SPV=0.04336;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:47,9:28,7:19,2
+chrY	11266802	.	G	C	0	PASS	DP=205;GPV=1;SPV=0.011379;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:112:92,20:52,12:40,8
+chrY	11280375	.	T	C	0	PASS	DP=499;GPV=1;SPV=0.017248;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:274:244,30:105,11:139,19
+chrY	11299445	.	T	TTTCCA	0	PASS	DP=51;GPV=1;SPV=0.020935;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,9:11,4:14,5
+chrY	11548439	.	T	TATGGAATGGAATGGA	0	PASS	DP=108;GPV=1;SPV=0.014981;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:36,6:22,5:14,1
+chrY	12093051	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:3,3:4,1
+chrY	13654970	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.00026317;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:5,5:3,3
+chrY	15682277	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:4,1:9,3
+chrY	20082265	.	A	T	0	PASS	DP=66;GPV=1;SPV=0.033133;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:16,2:11,5
+chrY	20087972	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:14,7:6,1
+chrY	22241393	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,8:5,7:5,1
+chrY	22241422	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:10,4:2,4
+chrY	26671555	.	T	A	0	PASS	DP=1600;GPV=1;SPV=0.041367;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:888:797,89:312,39:485,50
+chrY	56728619	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:0,0:22,4
+chrY	56752448	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.083915;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,4:0,0:29,4
+chrY	56828396	.	T	G	0	PASS	DP=232;GPV=1;SPV=0.00081136;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:121:105,16:55,12:50,4
+chrY	56834375	.	CTCTAT	C	0	PASS	DP=380;GPV=1;SPV=0.01997;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:205:173,28:94,15:79,13
+chrY	56854458	.	C	G	0	PASS	DP=422;GPV=1;SPV=0.046799;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:218:185,33:108,18:77,15
+chrY	56871363	.	G	T	0	PASS	DP=934;GPV=1;SPV=0.037494;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:499:435,64:207,37:228,27
+chrY	56878387	.	A	G	0	PASS	DP=839;GPV=1;SPV=0.048414;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:458:408,50:204,23:204,27
+chrY	56879897	.	T	C	0	PASS	DP=317;GPV=1;SPV=0.028389;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:154:129,25:77,14:52,11
+chrY	56883281	.	G	A	0	PASS	DP=251;GPV=1;SPV=0.035565;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:124,14:55,8:69,6
diff -r 000000000000 -r 924c527fb379 test-data/EGF167.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/EGF167.vcf	Sun Sep 13 18:40:29 2020 +0000
@@ -0,0 +1,4432 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##reference=hg38
+##source=varscan.py
+##contig=<ID=chr1,length=248956422>
+##contig=<ID=chr10,length=133797422>
+##contig=<ID=chr11,length=135086622>
+##contig=<ID=chr12,length=133275309>
+##contig=<ID=chr13,length=114364328>
+##contig=<ID=chr14,length=107043718>
+##contig=<ID=chr15,length=101991189>
+##contig=<ID=chr16,length=90338345>
+##contig=<ID=chr17,length=83257441>
+##contig=<ID=chr18,length=80373285>
+##contig=<ID=chr19,length=58617616>
+##contig=<ID=chr2,length=242193529>
+##contig=<ID=chr20,length=64444167>
+##contig=<ID=chr21,length=46709983>
+##contig=<ID=chr22,length=50818468>
+##contig=<ID=chr3,length=198295559>
+##contig=<ID=chr4,length=190214555>
+##contig=<ID=chr5,length=181538259>
+##contig=<ID=chr6,length=170805979>
+##contig=<ID=chr7,length=159345973>
+##contig=<ID=chr8,length=145138636>
+##contig=<ID=chr9,length=138394717>
+##contig=<ID=chrM,length=16569>
+##contig=<ID=chrX,length=156040895>
+##contig=<ID=chrY,length=57227415>
+##filter="SOMATIC"
+##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
+##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
+##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
+##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
+##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
+##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
+##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
+##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
+##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads">
+##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05">
+##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90">
+##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1">
+##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1">
+##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100">
+##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15">
+##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15">
+##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01">
+##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90">
+##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1">
+##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1">
+##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15">
+##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15">
+##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100">
+##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50">
+##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50">
+##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50">
+##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50">
+##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
+##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand">
+##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TUMOR
+chr1	64976	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.045103;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:13,1:9,7
+chr1	103756	.	G	T	0	PASS	DP=66;GPV=1;SPV=0.032644;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:16,5:6,2
+chr1	185034	.	A	G	0	PASS	DP=89;GPV=1;SPV=0.00088719;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:15,3:19,6
+chr1	186728	.	A	T	0	PASS	DP=139;GPV=1;SPV=0.018661;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:61,15:31,5:30,10
+chr1	739365	.	G	A	0	PASS	DP=125;GPV=1;SPV=0.043949;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:59,7:27,3:32,4
+chr1	790461	.	T	G	0	PASS	DP=77;GPV=1;SPV=0.047347;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:17,4:14,4
+chr1	1290925	.	G	A	0	PASS	DP=123;GPV=1;SPV=2.0989e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:38,21:20,12:18,9
+chr1	1749629	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:5,3:4,2
+chr1	2687442	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.045135;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:19,4:13,1
+chr1	3934011	.	C	CTT	0	PASS	DP=45;GPV=1;SPV=0.004222;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,9:6,6:3,3
+chr1	5673561	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.00023464;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:12,8:13,3
+chr1	5750713	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.00053311;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:15,5:16,4
+chr1	6160432	.	GAGA	G	0	PASS	DP=42;GPV=1;SPV=0.096892;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:18,4:1,0
+chr1	6662128	.	G	GT	0	PASS	DP=55;GPV=1;SPV=0.039538;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,9:13,5:10,4
+chr1	7083961	.	C	CT	0	PASS	DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:7,4:9,4
+chr1	7572902	.	T	C	0	PASS	DP=115;GPV=1;SPV=2.2819e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:39,26:18,16:21,10
+chr1	8007444	.	T	A	0	PASS	DP=47;GPV=1;SPV=0.026369;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:11,4:7,4
+chr1	8263331	.	ACG	A	0	PASS	DP=79;GPV=1;SPV=0.037745;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:22,3:15,2
+chr1	8781356	.	C	CAA	0	PASS	DP=55;GPV=1;SPV=0.004796;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:11,9:9,3
+chr1	10273740	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.20798;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:8,5:5,2:3,3
+chr1	10538613	.	T	TTC	0	PASS	DP=94;GPV=1;SPV=0.00068981;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:24,5:16,6
+chr1	11631652	.	C	T	0	PASS	DP=70;GPV=1;SPV=2.0105e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:8,5:7,4
+chr1	12043425	.	C	A	0	PASS	DP=45;GPV=1;SPV=0.13907;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:16,3:10,2
+chr1	12876485	.	C	G	0	PASS	DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:10,4:0,0
+chr1	12879513	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.01756;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:39,13:19,9:20,4
+chr1	12887164	.	A	T	0	PASS	DP=108;GPV=1;SPV=0.022406;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:18,3:26,6
+chr1	12936058	.	G	T	0	PASS	DP=149;GPV=1;SPV=4.5404e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:65,15:49,8:16,7
+chr1	13251355	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:2,4:3,1
+chr1	14124658	.	C	T	0	PASS	DP=92;GPV=1;SPV=8.4105e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:14,13:13,3
+chr1	15251295	.	C	A	0	PASS	DP=75;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:17,5:6,4:11,1
+chr1	15971571	.	A	C	0	PASS	DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:13,2:13,2
+chr1	16200383	.	A	G	0	PASS	DP=103;GPV=1;SPV=6.2138e-11;SS=2;SSC=102;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:26,31:21,15:5,16
+chr1	16508168	.	C	T	0	PASS	DP=231;GPV=1;SPV=0.032064;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:103,12:52,3:51,9
+chr1	16553056	.	T	G	0	PASS	DP=150;GPV=1;SPV=0.045458;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:59,15:26,12:33,3
+chr1	16561095	.	C	A	0	PASS	DP=347;GPV=1;SPV=0.0093043;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:184:156,28:85,16:71,12
+chr1	16575059	.	C	T	0	PASS	DP=179;GPV=1;SPV=0.048526;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:75,12:35,5:40,7
+chr1	16578491	.	T	C	0	PASS	DP=300;GPV=1;SPV=0.032164;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:143:118,25:48,12:70,13
+chr1	16596571	.	G	A	0	PASS	DP=339;GPV=1;SPV=0.032119;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:184:160,24:80,16:80,8
+chr1	16610160	.	C	T	0	PASS	DP=376;GPV=1;SPV=0.031944;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:195:170,25:88,14:82,11
+chr1	16613024	.	G	T	0	PASS	DP=390;GPV=1;SPV=0.017709;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:221:186,35:94,15:92,20
+chr1	16632466	.	C	G	0	PASS	DP=303;GPV=1;SPV=0.025558;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:149:122,27:68,10:54,17
+chr1	16653179	.	T	C	0	PASS	DP=148;GPV=1;SPV=0.03937;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:63,16:36,8:27,8
+chr1	16692440	.	G	A	0	PASS	DP=147;GPV=1;SPV=0.008973;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:60,20:34,16:26,4
+chr1	16701425	.	G	A	0	PASS	DP=128;GPV=1;SPV=0.048492;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:66,8:36,5:30,3
+chr1	16731644	.	T	C	0	PASS	DP=126;GPV=1;SPV=0.027018;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:54,9:29,2:25,7
+chr1	16756272	.	A	T	0	PASS	DP=398;GPV=1;SPV=0.036166;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:201:171,30:86,11:85,19
+chr1	16774088	.	T	C	0	PASS	DP=171;GPV=1;SPV=0.00059662;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:65,21:29,12:36,9
+chr1	16882059	.	TAA	T	0	PASS	DP=57;GPV=1;SPV=0.020314;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,8:9,2:9,6
+chr1	16896455	.	C	G	0	PASS	DP=202;GPV=1;SPV=0.03107;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:100,18:34,7:66,11
+chr1	16902883	.	G	A	0	PASS	DP=116;GPV=1;SPV=0.048236;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:47,9:20,6:27,3
+chr1	17175906	.	CTA	C	0	PASS	DP=22;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,7:2,5:2,2
+chr1	17487165	.	T	A	0	PASS	DP=85;GPV=1;SPV=2.8454e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:22,7:9,8
+chr1	19683758	.	CTTTTTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.0074891;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,5:3,4:2,1
+chr1	20651805	.	A	T	0	PASS	DP=72;GPV=1;SPV=0.029828;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:10,3:17,8
+chr1	21387063	.	CG	C	0	PASS	DP=17;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:3,1:2,1
+chr1	21945968	.	CA	C	0	PASS	DP=36;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:5,8:4,5:1,3
+chr1	24901173	.	C	A	0	PASS	DP=86;GPV=1;SPV=8.7093e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:22,23:12,12:10,11
+chr1	25098735	.	G	A	0	PASS	DP=100;GPV=1;SPV=2.3507e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:32,20:13,10:19,10
+chr1	25764475	.	C	T	0	PASS	DP=85;GPV=1;SPV=1.2544e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:24,20:12,11:12,9
+chr1	26037226	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:7,3:7,2
+chr1	26095828	.	G	A	0	PASS	DP=88;GPV=1;SPV=4.9557e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:35,16:18,10:17,6
+chr1	26407725	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,16:8,5:6,11
+chr1	26593918	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.03809;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,7:13,6:5,1
+chr1	26818069	.	T	TG	0	PASS	DP=46;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,1:8,3
+chr1	28236460	.	T	A	0	PASS	DP=98;GPV=1;SPV=1.8875e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:16,6:14,9
+chr1	29873254	.	T	TA	0	PASS	DP=50;GPV=1;SPV=0.035132;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:13,7:7,1
+chr1	31186395	.	T	G	0	PASS	DP=41;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,4:2,3:2,1
+chr1	31850450	.	GT	G	0	PASS	DP=48;GPV=1;SPV=0.030558;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:13,8:8,6
+chr1	34362437	.	C	T	0	PASS	DP=89;GPV=1;SPV=3.6106e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:34,25:16,11:18,14
+chr1	34371742	.	T	TA	0	PASS	DP=46;GPV=1;SPV=0.00054583;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:2,10:1,2:1,8
+chr1	34512079	.	T	C	0	PASS	DP=101;GPV=1;SPV=1.245e-09;SS=2;SSC=89;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:25,23:9,12:16,11
+chr1	35705066	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.011795;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:8,6:4,1
+chr1	36213962	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.031374;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,7:11,5:3,2
+chr1	37078451	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:6,2:3,1:3,1
+chr1	37359811	.	G	T	0	PASS	DP=78;GPV=1;SPV=0.00099533;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:11,4:13,3
+chr1	39194317	.	ATTTCTTTTCT	A	0	PASS	DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:6,2:23,2
+chr1	39940663	.	A	C	0	PASS	DP=104;GPV=1;SPV=3.7619e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:39,27:27,13:12,14
+chr1	41545371	.	C	A	0	PASS	DP=37;GPV=1;SPV=0.0020332;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:6,5:3,5
+chr1	42057169	.	T	TA	0	PASS	DP=55;GPV=1;SPV=0.0021337;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,8:13,4:6,4
+chr1	42921136	.	C	CTTTT	0	PASS	DP=44;GPV=1;SPV=0.0034225;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:9,10:2,1
+chr1	44065405	.	GTT	G	0	PASS	DP=47;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:10,7:6,1
+chr1	44091635	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.016023;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:9,9:4,1
+chr1	44259924	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.022447;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:30,7:10,4
+chr1	44386736	.	T	C	0	PASS	DP=96;GPV=1;SPV=8.408e-10;SS=2;SSC=90;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:24,25:9,9:15,16
+chr1	46232818	.	T	A	0	PASS	DP=76;GPV=1;SPV=0.01117;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:24,15:14,6:10,9
+chr1	47550338	.	CTT	C	0	PASS	DP=31;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,7:4,5:4,2
+chr1	54476217	.	A	C	0	PASS	DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:4,2:26,2
+chr1	55047134	.	T	C	0	PASS	DP=69;GPV=1;SPV=3.8594e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:4,3:14,7
+chr1	56322079	.	C	CAA	0	PASS	DP=44;GPV=1;SPV=0.021839;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,12:8,9:4,3
+chr1	57924627	.	T	A	0	PASS	DP=52;GPV=1;SPV=0.046726;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:10,2:11,2
+chr1	58387722	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,3:6,3:0,0
+chr1	59846599	.	TC	T	0	PASS	DP=30;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:0,1:7,3
+chr1	60376642	.	A	ACAC	0	PASS	DP=61;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:3,6:1,2:2,4
+chr1	61952253	.	T	TGAGAGAGA	0	PASS	DP=78;GPV=1;SPV=0.0020298;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,16:13,12:13,4
+chr1	64603266	.	G	A	0	PASS	DP=73;GPV=1;SPV=2.2204e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:19,19:13,10:6,9
+chr1	65708676	.	C	CT	0	PASS	DP=19;GPV=1;SPV=0.00087413;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:1,6:0,5:1,1
+chr1	66434631	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.21414;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:12,3:10,2
+chr1	67953866	.	T	TCTC	0	PASS	DP=22;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:3,2:2,5
+chr1	68354547	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,5:6,1:3,4
+chr1	69004827	.	T	G	0	PASS	DP=83;GPV=1;SPV=1.1895e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:31,19:13,11:18,8
+chr1	70658070	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:6,2:10,2
+chr1	71597432	.	G	C	0	PASS	DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:3,2:2,1
+chr1	72088796	.	CTTTTTTT	C	0	PASS	DP=33;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,7:6,6:2,1
+chr1	74056251	.	C	T	0	PASS	DP=82;GPV=1;SPV=2.1076e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:16,15:11,4
+chr1	77449659	.	G	T	0	PASS	DP=75;GPV=1;SPV=0.04342;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:17,2:19,3
+chr1	79571375	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:7,2:12,2
+chr1	79649737	.	C	CTCTT	0	PASS	DP=52;GPV=1;SPV=0.022632;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:5,7:12,2
+chr1	82541637	.	C	A	0	PASS	DP=88;GPV=1;SPV=4.3414e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,16:9,7:15,9
+chr1	83487712	.	T	G	0	PASS	DP=94;GPV=1;SPV=0.019975;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:19,2:20,8
+chr1	84498559	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.028003;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:10,3:11,2
+chr1	86738252	.	G	GT	0	PASS	DP=73;GPV=1;SPV=0.027342;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:18,7:13,4
+chr1	86768048	.	G	A	0	PASS	DP=95;GPV=1;SPV=2.5366e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,18:12,9:16,9
+chr1	87891193	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,8:10,7:3,1
+chr1	88047083	.	GAA	G	0	PASS	DP=47;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,4:9,3:4,1
+chr1	89502764	.	T	TCACACACACA	0	PASS	DP=45;GPV=1;SPV=0.047956;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:5,3:8,2
+chr1	89776380	.	TA	T	0	PASS	DP=72;GPV=1;SPV=0.077619;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:22,3:17,2
+chr1	89776412	.	T	TA	0	PASS	DP=64;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:19,10:10,7:9,3
+chr1	96825934	.	ATGTGTGTG	A	0	PASS	DP=48;GPV=1;SPV=0.0054311;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:5,5:8,5
+chr1	100327770	.	G	GTGTGT	0	PASS	DP=59;GPV=1;SPV=0.0045922;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,14:6,8:11,6
+chr1	100327773	.	T	G	0	PASS	DP=55;GPV=1;SPV=0.01147;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:17,13:8,7:9,6
+chr1	100550598	.	C	CT	0	PASS	DP=58;GPV=1;SPV=0.17898;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,5:6,2:30,3
+chr1	101258579	.	GTCTTTCTT	G	0	PASS	DP=62;GPV=1;SPV=0.038416;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,5:6,3:15,2
+chr1	101855904	.	G	C	0	PASS	DP=80;GPV=1;SPV=5.197e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:16,6:14,9
+chr1	102769692	.	G	A	0	PASS	DP=79;GPV=1;SPV=1.1765e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:26,15:12,3:14,12
+chr1	105154315	.	A	C	0	PASS	DP=95;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:46:1,3:1,1:0,2
+chr1	105171195	.	CTT	C	0	PASS	DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,4:2,1
+chr1	108658099	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,4:8,3:8,1
+chr1	108865213	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,6:13,3:1,3
+chr1	109171951	.	C	A	0	PASS	DP=78;GPV=1;SPV=0.0019813;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:18,6:21,9
+chr1	111005120	.	T	TA	0	PASS	DP=55;GPV=1;SPV=0.040965;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:13,4:12,1
+chr1	111502084	.	AAT	A	0	PASS	DP=52;GPV=1;SPV=0.0025292;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:6,4:9,9
+chr1	111502097	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.0020721;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,14:7,4:8,10
+chr1	111502124	.	A	ATAGG	0	PASS	DP=56;GPV=1;SPV=0.0019759;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:7,3:12,9
+chr1	111502125	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.0025754;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:7,3:9,9
+chr1	112337596	.	CTTTTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,8:5,6:2,2
+chr1	113069477	.	C	CA	0	PASS	DP=18;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:2,7:1,1:1,6
+chr1	113070430	.	G	A	0	PASS	DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:21,4:2,0
+chr1	113938941	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.006865;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,6:2,3:4,3
+chr1	114660139	.	C	T	0	PASS	DP=73;GPV=1;SPV=3.1203e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:27,18:9,11:18,7
+chr1	114789069	.	C	CTTTCTTTT	0	PASS	DP=46;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,4:6,1:7,3
+chr1	115079137	.	C	CCACA	0	PASS	DP=59;GPV=1;SPV=0.0041929;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:7,4:7,6
+chr1	115415941	.	G	GATATATATATATATATAT	0	PASS	DP=45;GPV=1;SPV=0.11013;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,4:10,3:12,1
+chr1	115910145	.	C	CA	0	PASS	DP=55;GPV=1;SPV=0.0017056;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:11,6:6,1
+chr1	116253903	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00092166;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:11,2:19,6
+chr1	117134134	.	G	GTGTACGTA	0	PASS	DP=84;GPV=1;SPV=0.01036;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,7:14,5:19,2
+chr1	118139338	.	A	G	0	PASS	DP=98;GPV=1;SPV=0.0025423;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:27,2:19,8
+chr1	118784421	.	C	CATAT	0	PASS	DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:2,6:3,2
+chr1	120168801	.	T	TCA	0	PASS	DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:14,2:9,2
+chr1	120169213	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.051443;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:21,4:18,1
+chr1	120345124	.	T	G	0	PASS	DP=64;GPV=1;SPV=0.031399;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:9,4:12,3
+chr1	120446150	.	A	T	0	PASS	DP=108;GPV=1;SPV=0.006307;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:44,15:24,11:20,4
+chr1	120860952	.	A	G	0	PASS	DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:2,6:6,1
+chr1	121537706	.	C	A	0	PASS	DP=123;GPV=1;SPV=0.03412;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:53,16:29,13:24,3
+chr1	121537819	.	C	G	0	PASS	DP=113;GPV=1;SPV=0.0057897;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:42,18:26,7:16,11
+chr1	121673339	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr1	121692848	.	A	T	0	PASS	DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:1,1:7,3
+chr1	121817176	.	T	C	0	PASS	DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:8,3:16,1
+chr1	121817303	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:19,2:12,2
+chr1	121817879	.	A	T	0	PASS	DP=69;GPV=1;SPV=0.048616;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:17,3:11,3
+chr1	121908948	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.026058;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:1,2:21,8
+chr1	121919722	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.018729;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:8,5:6,2
+chr1	122070636	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,9:2,3:3,6
+chr1	122382529	.	T	C	0	PASS	DP=119;GPV=1;SPV=0.047399;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:55,9:40,8:15,1
+chr1	123243045	.	T	G	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr1	124797823	.	A	T	0	PASS	DP=71;GPV=1;SPV=0.0051201;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:20,7:11,7
+chr1	124804084	.	T	A	0	PASS	DP=135;GPV=1;SPV=0.045229;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:54,7:30,6:24,1
+chr1	124820032	.	C	A	0	PASS	DP=48;GPV=1;SPV=0.13227;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:4,3:25,3
+chr1	124846536	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:26,3:2,1
+chr1	124847040	.	T	C	0	PASS	DP=277;GPV=1;SPV=0.0091812;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:143:121,22:21,10:100,12
+chr1	124847056	.	A	T	0	PASS	DP=239;GPV=1;SPV=0.0069251;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:100,20:15,11:85,9
+chr1	124861830	.	T	G	0	PASS	DP=181;GPV=1;SPV=0.019611;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:80,16:71,15:9,1
+chr1	124864475	.	G	C	0	PASS	DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:29,3:6,1
+chr1	124881542	.	C	A	0	PASS	DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:1,0:32,4
+chr1	124895211	.	T	A	0	PASS	DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:8,3:9,2
+chr1	124919453	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:11,1:11,5
+chr1	125141867	.	T	G	0	PASS	DP=112;GPV=1;SPV=0.036077;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,7:16,5:26,2
+chr1	125174130	.	G	T	0	PASS	DP=304;GPV=1;SPV=0.0015423;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:165:128,37:90,32:38,5
+chr1	143210830	.	A	T	0	PASS	DP=697;GPV=1;SPV=0.030353;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:360:312,48:298,24:14,24
+chr1	143210881	.	C	T	0	PASS	DP=780;GPV=1;SPV=0.010966;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:407:357,49:338,25:19,24
+chr1	143258960	.	A	C	0	PASS	DP=202;GPV=1;SPV=0.015095;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:84,23:23,5:61,18
+chr1	143287623	.	TA	T	0	PASS	DP=71;GPV=1;SPV=0.073933;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:25,4:13,1
+chr1	143287625	.	T	G	0	PASS	DP=72;GPV=1;SPV=0.060799;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:25,4:12,1
+chr1	143287626	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.034354;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:26,5:13,1
+chr1	143306655	.	TA	T	0	PASS	DP=114;GPV=1;SPV=0.036552;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:47,8:34,4:13,4
+chr1	143306705	.	T	A	0	PASS	DP=116;GPV=1;SPV=0.0049119;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:49,10:38,6:11,4
+chr1	143341813	.	TA	T	0	PASS	DP=28;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:7,5:1,2
+chr1	144106291	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:6,3:2,6
+chr1	144422041	.	C	A	0	PASS	DP=51;GPV=1;SPV=0.041838;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:8,4:15,1
+chr1	144926620	.	G	T	0	PASS	DP=105;GPV=1;SPV=0.0043757;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:25,8:18,2
+chr1	144956439	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:5,3:6,1
+chr1	146040573	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:9,4:8,1
+chr1	146122266	.	C	G	0	PASS	DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:0,0:12,4
+chr1	146186479	.	C	T	0	PASS	DP=111;GPV=1;SPV=0.044985;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:23,9:25,4
+chr1	146670550	.	C	G	0	PASS	DP=42;GPV=1;SPV=0.00042668;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:10,18:6,13:4,5
+chr1	146911184	.	T	C	0	PASS	DP=114;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:58,8:26,2:32,6
+chr1	147202313	.	T	C	0	PASS	DP=41;GPV=1;SPV=0.046544;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:12,6:5,3
+chr1	148156731	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.019962;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:0,3:24,2
+chr1	148418215	.	G	T	0	PASS	DP=95;GPV=1;SPV=0.027816;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:54,8:26,4:28,4
+chr1	148702391	.	C	T	0	PASS	DP=76;GPV=1;SPV=0.032289;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:13,4:25,2
+chr1	148941544	.	T	G	0	PASS	DP=33;GPV=1;SPV=0.024462;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,3:3,1
+chr1	148952750	.	T	G	0	PASS	DP=83;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,4:8,3:15,1
+chr1	149075897	.	TA	T	0	PASS	DP=151;GPV=1;SPV=0.01295;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:67,16:30,7:37,9
+chr1	149137986	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:14,1:9,3
+chr1	150318976	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.020934;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:14,1:16,6
+chr1	150885343	.	CAAA	C	0	PASS	DP=42;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,7:4,6:3,1
+chr1	151450023	.	A	ATT	0	PASS	DP=46;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,6:11,4:3,2
+chr1	151517853	.	C	CTT	0	PASS	DP=64;GPV=1;SPV=0.00072083;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:20,20:9,17:11,3
+chr1	151629586	.	A	AT	0	PASS	DP=74;GPV=1;SPV=0.009128;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,9:17,6:19,3
+chr1	151692406	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,4:2,2:5,2
+chr1	152644015	.	TCACA	T	0	PASS	DP=63;GPV=1;SPV=0.023594;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:16,9:9,2
+chr1	152964062	.	A	AC	0	PASS	DP=64;GPV=1;SPV=0.17382;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,5:30,2:10,3
+chr1	153112676	.	C	T	0	PASS	DP=114;GPV=1;SPV=0.00027577;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:59,20:29,13:30,7
+chr1	153406780	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.0015324;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:25,5:19,6
+chr1	153987515	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,4:10,3:14,1
+chr1	154490794	.	G	GT	0	PASS	DP=82;GPV=1;SPV=0.0084221;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,10:19,7:23,3
+chr1	154868936	.	CAA	C	0	PASS	DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:13,1:23,3
+chr1	155436491	.	C	CTT	0	PASS	DP=47;GPV=1;SPV=0.15941;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,4:13,3:12,1
+chr1	155729884	.	C	T	0	PASS	DP=111;GPV=1;SPV=0.001145;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:57,14:27,9:30,5
+chr1	156310037	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,12:8,11:1,1
+chr1	156313363	.	AG	A	0	PASS	DP=61;GPV=1;SPV=0.13544;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:13,1:20,3
+chr1	156578259	.	T	A	0	PASS	DP=58;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:6,5:19,7
+chr1	157180917	.	A	ACTCTCTCTCTCTCT	0	PASS	DP=52;GPV=1;SPV=0.0020002;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,12:8,3:6,9
+chr1	159483237	.	T	C	0	PASS	DP=75;GPV=1;SPV=0.007626;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:23,4:16,7
+chr1	159932249	.	C	T	0	PASS	DP=100;GPV=1;SPV=2.2441e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:42,19:25,12:17,7
+chr1	160112965	.	C	G	0	PASS	DP=67;GPV=1;SPV=0.033188;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:20,7:11,2
+chr1	160751856	.	CTCTCTCTATATATATA	C	0	PASS	DP=50;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:5,4:15,5
+chr1	160853782	.	TA	T	0	PASS	DP=49;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:21,8:7,7:14,1
+chr1	161471866	.	G	C	0	PASS	DP=297;GPV=1;SPV=0.048391;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:147,19:71,5:76,14
+chr1	161559730	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.039102;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:47,9:26,4:21,5
+chr1	161641777	.	T	A	0	PASS	DP=95;GPV=1;SPV=0.051843;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:53,6:29,4:24,2
+chr1	161646609	.	G	T	0	PASS	DP=108;GPV=1;SPV=0.0037074;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:54,16:25,10:29,6
+chr1	162403488	.	GAAAAAAAAA	G	0	PASS	DP=52;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,4:15,2:9,2
+chr1	163548254	.	GTTTTTT	G	0	PASS	DP=41;GPV=1;SPV=0.0089185;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:10,4:7,5
+chr1	163794200	.	T	C	0	PASS	DP=103;GPV=1;SPV=0.021113;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:53,11:27,8:26,3
+chr1	164927646	.	C	CTTT	0	PASS	DP=47;GPV=1;SPV=0.0098611;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,10:5,9:7,1
+chr1	165622729	.	G	C	0	PASS	DP=67;GPV=1;SPV=0.0063951;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:23,5:8,4
+chr1	165820486	.	T	TAC	0	PASS	DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:14,2:8,2
+chr1	166677437	.	G	GTATATATATA	0	PASS	DP=54;GPV=1;SPV=0.028036;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,12:14,10:10,2
+chr1	167061586	.	GT	G	0	PASS	DP=52;GPV=1;SPV=0.034541;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,10:17,8:5,2
+chr1	167985210	.	T	G	0	PASS	DP=97;GPV=1;SPV=0.0023257;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:45,10:15,2:30,8
+chr1	168639090	.	TTC	T	0	PASS	DP=52;GPV=1;SPV=0.047306;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,10:5,5:18,5
+chr1	169620795	.	T	TTGTGTG	0	PASS	DP=40;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,8:0,3:7,5
+chr1	169778636	.	TG	T	0	PASS	DP=53;GPV=1;SPV=0.24396;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,4:16,2:17,2
+chr1	169810834	.	ATTTTTT	A	0	PASS	DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:8,2:5,2
+chr1	169847313	.	TAAAAA	T	0	PASS	DP=41;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:9,12:8,9:1,3
+chr1	170226562	.	T	TCCTCCCTCCCTCCCTCCCTC	0	PASS	DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:0,0:13,4
+chr1	170585727	.	T	TA	0	PASS	DP=35;GPV=1;SPV=0.2201;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:16,5:5,1
+chr1	170667312	.	A	G	0	PASS	DP=97;GPV=1;SPV=0.16587;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:11,5:8,2:3,3
+chr1	171353802	.	CT	C	0	PASS	DP=72;GPV=1;SPV=0.01601;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:38,9:25,5:13,4
+chr1	171944377	.	A	G	0	PASS	DP=94;GPV=1;SPV=0.0034588;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:22,5:21,4
+chr1	172694443	.	C	CAT	0	PASS	DP=110;GPV=1;SPV=0.025491;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:57,7:22,2:35,5
+chr1	172758534	.	C	CTTTT	0	PASS	DP=48;GPV=1;SPV=0.0034427;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,12:7,9:8,3
+chr1	174136219	.	T	A	0	PASS	DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:9,2:20,2
+chr1	174265544	.	G	GA	0	PASS	DP=37;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,8:6,6:6,2
+chr1	174378863	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.0011386;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:11,1:10,8
+chr1	174378864	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.0018974;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:12,1:11,8
+chr1	175125703	.	CTCTTTCTTTCTT	C	0	PASS	DP=36;GPV=1;SPV=0.34557;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,4:0,2:14,2
+chr1	175403206	.	G	A	0	PASS	DP=99;GPV=1;SPV=3.1057e-13;SS=2;SSC=125;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:19,34:9,14:10,20
+chr1	176041345	.	CT	C	0	PASS	DP=75;GPV=1;SPV=0.10224;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:48,7:26,5:22,2
+chr1	176178338	.	CAA	C	0	PASS	DP=81;GPV=1;SPV=0.12076;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:51,6:35,3:16,3
+chr1	177734589	.	GCTT	G	0	PASS	DP=47;GPV=1;SPV=0.068571;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:8,2:17,4
+chr1	178696324	.	AGAT	A	0	PASS	DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:9,3:13,4
+chr1	179597332	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:9,8:7,1
+chr1	180980206	.	C	CAAAA	0	PASS	DP=35;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,5:9,4:5,1
+chr1	181894088	.	G	A	0	PASS	DP=100;GPV=1;SPV=2.0132e-09;SS=2;SSC=86;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:29,41:17,23:12,18
+chr1	182341376	.	CT	C	0	PASS	DP=54;GPV=1;SPV=0.11921;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:18,4:13,1
+chr1	183438201	.	G	GAA	0	PASS	DP=82;GPV=1;SPV=0.051443;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,5:26,2:13,3
+chr1	184884215	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:6,2:2,4
+chr1	185652665	.	A	T	0	PASS	DP=105;GPV=1;SPV=0.0013673;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:51,12:21,7:30,5
+chr1	185927910	.	A	G	0	PASS	DP=91;GPV=1;SPV=0.00015783;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:18,6:21,9
+chr1	186631576	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,6:9,4:5,2
+chr1	186868071	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.018671;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,8:8,7:5,1
+chr1	186966119	.	A	T	0	PASS	DP=63;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,4:13,2:15,2
+chr1	187686787	.	A	C	0	PASS	DP=115;GPV=1;SPV=3.8302e-12;SS=2;SSC=114;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:30,45:13,23:17,22
+chr1	189117603	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,5:7,4:7,1
+chr1	189161360	.	T	A	0	PASS	DP=36;GPV=1;SPV=0.0014886;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:7,20:3,9:4,11
+chr1	190018670	.	G	GAT	0	PASS	DP=24;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,6:1,4:2,2
+chr1	190195804	.	C	G	0	PASS	DP=83;GPV=1;SPV=0.00048878;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:16,6:21,8
+chr1	190365808	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.26877;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:13,6:7,4:6,2
+chr1	191299707	.	C	CTT	0	PASS	DP=39;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,6:11,5:8,1
+chr1	191349460	.	ATTTTTTTTTTT	A	0	PASS	DP=50;GPV=1;SPV=0.0073497;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,9:11,7:9,2
+chr1	191907551	.	TTC	T	0	PASS	DP=67;GPV=1;SPV=0.039036;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:8,2:23,3
+chr1	192799509	.	TA	T	0	PASS	DP=46;GPV=1;SPV=0.049128;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:16,4:8,3
+chr1	192857317	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr1	193550723	.	T	A	0	PASS	DP=77;GPV=1;SPV=4.8037e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:31,21:16,13:15,8
+chr1	194098959	.	T	TA	0	PASS	DP=40;GPV=1;SPV=0.027999;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,16:8,6:6,10
+chr1	194280332	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:7,2:1,2
+chr1	194303668	.	TATAA	T	0	PASS	DP=197;GPV=1;SPV=0.042129;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:123:101,22:58,9:43,13
+chr1	194398803	.	G	C	0	PASS	DP=92;GPV=1;SPV=0.074661;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:6,6:4,2:2,4
+chr1	194578836	.	C	A	0	PASS	DP=84;GPV=1;SPV=0.0037205;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:17,3:23,7
+chr1	195886836	.	C	A	0	PASS	DP=98;GPV=1;SPV=0.0032849;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:51,12:31,7:20,5
+chr1	195990833	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.21542;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:12,3:24,2
+chr1	196820506	.	T	G	0	PASS	DP=57;GPV=1;SPV=0.0043846;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:10,5:8,7
+chr1	198524124	.	T	A	0	PASS	DP=86;GPV=1;SPV=0.54715;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:16,4:5,1:11,3
+chr1	200127708	.	AAATAT	A	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,2:8,2
+chr1	200383093	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:16,2:3,2
+chr1	200509269	.	C	CTTT	0	PASS	DP=36;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,9:2,8:2,1
+chr1	200581761	.	CT	C	0	PASS	DP=49;GPV=1;SPV=0.003052;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,15:8,7:9,8
+chr1	200686036	.	C	CAAAAAAAA	0	PASS	DP=44;GPV=1;SPV=0.057386;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:16,10:8,9:8,1
+chr1	200774073	.	G	T	0	PASS	DP=120;GPV=1;SPV=3.62e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:51,16:30,7:21,9
+chr1	200774074	.	T	C	0	PASS	DP=116;GPV=1;SPV=0.00029843;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:52,13:30,6:22,7
+chr1	202149367	.	A	G	0	PASS	DP=87;GPV=1;SPV=1.984e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:30,20:14,10:16,10
+chr1	202401361	.	A	AT	0	PASS	DP=24;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,5:6,2:3,3
+chr1	202786166	.	A	AT	0	PASS	DP=44;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:6,12:4,10:2,2
+chr1	202938064	.	AAAAG	A	0	PASS	DP=32;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:6,7:8,3
+chr1	203479706	.	CAA	C	0	PASS	DP=59;GPV=1;SPV=0.060553;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,9:19,8:9,1
+chr1	204158411	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,8:6,7:4,1
+chr1	204452288	.	C	CTTTT	0	PASS	DP=33;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,6:3,2:10,4
+chr1	204811028	.	CT	C	0	PASS	DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:9,4:3,1
+chr1	206267113	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.021607;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:55,7:30,3:25,4
+chr1	206523350	.	AT	A	0	PASS	DP=40;GPV=1;SPV=0.035283;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:4,1:15,6
+chr1	207617691	.	CCTTT	C	0	PASS	DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,16:5,11:8,5
+chr1	208086990	.	TGAGA	T	0	PASS	DP=44;GPV=1;SPV=0.004662;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:1,7:0,5:1,2
+chr1	208221381	.	GTT	G	0	PASS	DP=41;GPV=1;SPV=0.039921;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,7:12,6:3,1
+chr1	208844667	.	GAAAGGA	G	0	PASS	DP=60;GPV=1;SPV=0.0091986;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:16,7:11,1
+chr1	208845676	.	AATAG	A	0	PASS	DP=88;GPV=1;SPV=9.3443e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:23,19:14,11:9,8
+chr1	209698180	.	TAGA	T	0	PASS	DP=89;GPV=1;SPV=0.040883;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:25,6:12,2:13,4
+chr1	210109590	.	AG	A	0	PASS	DP=70;GPV=1;SPV=0.057106;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:12,1:19,3
+chr1	210867364	.	T	C	0	PASS	DP=96;GPV=1;SPV=0.1569;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:39,7:19,3:20,4
+chr1	211029334	.	TA	T	0	PASS	DP=46;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,13:6,6:10,7
+chr1	212168573	.	A	ATATTTTTT	0	PASS	DP=40;GPV=1;SPV=0.023342;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,6:10,3:5,3
+chr1	212481402	.	T	TAA	0	PASS	DP=54;GPV=1;SPV=0.15614;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,4:14,2:14,2
+chr1	212633936	.	C	CT	0	PASS	DP=58;GPV=1;SPV=0.027364;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:19,4:8,2
+chr1	212851790	.	TA	T	0	PASS	DP=53;GPV=1;SPV=0.00096505;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:19,13:2,1
+chr1	213363772	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.0045767;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,3:4,3
+chr1	214350707	.	A	ATTT	0	PASS	DP=42;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,10:7,6:4,4
+chr1	216039333	.	G	A	0	PASS	DP=99;GPV=1;SPV=0.0018064;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:47,11:21,8:26,3
+chr1	216098427	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.0032764;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:44,11:27,6:17,5
+chr1	216377791	.	GAGAAGGAAAGAAATAA	G	0	PASS	DP=37;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,4:9,3:7,1
+chr1	217080671	.	GTT	G	0	PASS	DP=48;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:15,4:9,3:6,1
+chr1	217188193	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.028508;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,6:15,1:10,5
+chr1	217694010	.	G	A	0	PASS	DP=53;GPV=1;SPV=0.03781;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,14:14,9:11,5
+chr1	217795362	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.087294;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,7:6,6:7,1
+chr1	220032243	.	T	A	0	PASS	DP=75;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:6,3:3,1:3,2
+chr1	220835311	.	GA	G	0	PASS	DP=48;GPV=1;SPV=0.027649;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:20,5:3,2
+chr1	220883332	.	C	G	0	PASS	DP=73;GPV=1;SPV=3.0121e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:20,31:10,13:10,18
+chr1	220952530	.	C	CTA	0	PASS	DP=63;GPV=1;SPV=0.058243;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:16,5:20,2
+chr1	220971720	.	A	AAT	0	PASS	DP=68;GPV=1;SPV=0.027829;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:14,2:21,5
+chr1	221983183	.	C	CGT	0	PASS	DP=37;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,12:8,9:6,3
+chr1	222039722	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.012061;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,7:10,1:10,6
+chr1	222138220	.	GTA	G	0	PASS	DP=75;GPV=1;SPV=0.0014895;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,12:15,4:19,8
+chr1	222154901	.	AAAAAAC	A	0	PASS	DP=43;GPV=1;SPV=0.017042;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:12,9:4,1
+chr1	222480540	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:15,1:7,3
+chr1	223439672	.	T	TCTC	0	PASS	DP=53;GPV=1;SPV=0.20063;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:12,2:22,3
+chr1	223675743	.	C	G	0	PASS	DP=61;GPV=1;SPV=0.10445;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,7:22,3:3,4
+chr1	223682908	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:12,2:2,2
+chr1	223930244	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.0024349;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:7,9:18,1
+chr1	224209064	.	G	A	0	PASS	DP=71;GPV=1;SPV=0.049315;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:25,9:18,6:7,3
+chr1	224443682	.	GATATCT	G	0	PASS	DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:12,4:8,1
+chr1	224452781	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,15:8,13:6,2
+chr1	225831560	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.031932;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:26,7:5,1:21,6
+chr1	226064434	.	A	T	0	PASS	DP=75;GPV=1;SPV=0.031822;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:42,8:23,5:19,3
+chr1	226504641	.	A	G	0	PASS	DP=83;GPV=1;SPV=0.0073028;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:45,12:33,6:12,6
+chr1	227126468	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:29,4:14,2:15,2
+chr1	227156121	.	T	G	0	PASS	DP=82;GPV=1;SPV=0.030583;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:11,7:7,4:4,3
+chr1	227196338	.	C	CTTTTTTT	0	PASS	DP=32;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,8:3,5:3,3
+chr1	227380955	.	G	T	0	PASS	DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:14,3:20,1
+chr1	228819196	.	G	A	0	PASS	DP=92;GPV=1;SPV=5.8392e-09;SS=2;SSC=82;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:26,38:17,19:9,19
+chr1	229590256	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.024751;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:12,7:4,1:8,6
+chr1	230319848	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:6,9:4,2
+chr1	231615380	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.026121;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,12:11,6:16,6
+chr1	232123741	.	C	T	0	PASS	DP=119;GPV=1;SPV=0.0057052;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:46,19:18,6:28,13
+chr1	232568977	.	G	A	0	PASS	DP=101;GPV=1;SPV=5.4628e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:41,15:27,6:14,9
+chr1	232656016	.	A	ATTTTT	0	PASS	DP=54;GPV=1;SPV=0.011272;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:10,14:6,10:4,4
+chr1	233918822	.	A	C	0	PASS	DP=65;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:11,7:5,1:6,6
+chr1	233922486	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.0023473;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:13,17:9,7:4,10
+chr1	234143288	.	C	CT	0	PASS	DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:21,3:8,1
+chr1	234446633	.	A	AAATTATATAATTTCTTAATATAT	0	PASS	DP=97;GPV=1;SPV=0.014645;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:40,14:23,4:17,10
+chr1	234779794	.	C	T	0	PASS	DP=267;GPV=1;SPV=0.009407;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:148:118,30:62,18:56,12
+chr1	234946032	.	AAAAAAATATATATATAT	A	0	PASS	DP=26;GPV=1;SPV=0.018593;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,9:4,6:4,3
+chr1	236842784	.	G	GTATATATATA	0	PASS	DP=42;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,10:5,6:4,4
+chr1	237565157	.	C	CTT	0	PASS	DP=55;GPV=1;SPV=0.015259;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,12:1,3:24,9
+chr1	237952151	.	TATATATATATATA	T	0	PASS	DP=28;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:6,1:5,4
+chr1	237952166	.	A	T	0	PASS	DP=26;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,4:4,1:0,3
+chr1	238153670	.	TTCTCTCTCTC	T	0	PASS	DP=51;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,13:5,7:12,6
+chr1	238188360	.	CCTCCTCCTTCTTCTTCTTCTT	C	0	PASS	DP=40;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,4:1,0:19,4
+chr1	240178447	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.0055469;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:10,8:8,3:2,5
+chr1	240742610	.	CTTTT	C	0	PASS	DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,3:3,1
+chr1	240919005	.	G	T	0	PASS	DP=101;GPV=1;SPV=9.1325e-14;SS=2;SSC=130;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:19,46:9,18:10,28
+chr1	241017411	.	G	A	0	PASS	DP=79;GPV=1;SPV=2.0643e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:21,30:8,11:13,19
+chr1	241068203	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.0020554;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:9,3:13,9
+chr1	241744410	.	T	C	0	PASS	DP=90;GPV=1;SPV=0.0032559;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:46,12:19,5:27,7
+chr1	242207878	.	TTATATA	T	0	PASS	DP=49;GPV=1;SPV=0.022676;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:8,5:13,9
+chr1	242337258	.	T	TCATGAGGCAGTAGATTGTATTTTAAAGATGAC	0	PASS	DP=65;GPV=1;SPV=0.003144;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,13:7,10:18,3
+chr1	242490879	.	A	G	0	PASS	DP=90;GPV=1;SPV=0.00025984;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:40,15:17,7:23,8
+chr1	243583193	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:8,1:11,4
+chr1	245045757	.	G	A	0	PASS	DP=91;GPV=1;SPV=0.10542;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:34,5:20,1:14,4
+chr1	245857516	.	T	TGCATAGGTCTGGTCCTGGATTCTCCCTCTGCTTC	0	PASS	DP=81;GPV=1;SPV=0.034415;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:34,14:16,6:18,8
+chr1	246362764	.	G	C	0	PASS	DP=172;GPV=1;SPV=0.023364;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:84,20:46,15:38,5
+chr1	246892301	.	CTTTT	C	0	PASS	DP=28;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,4:2,2:8,2
+chr1	247219140	.	T	C	0	PASS	DP=97;GPV=1;SPV=0.011658;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:16,9:27,4
+chr1	247852918	.	CAGAGAGAGAGAGAGAG	C	0	PASS	DP=56;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:3,5:2,2:1,3
+chr1	247907113	.	TTTTTTC	T	0	PASS	DP=61;GPV=1;SPV=0.073271;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:5,1:27,4
+chr1	248168028	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.012992;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:8,3:9,7
+chr1	248306538	.	CG	C	0	PASS	DP=32;GPV=1;SPV=0.046615;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:3,4:12,4
+chr1	248452271	.	CA	C	0	PASS	DP=31;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:13,2:2,5
+chr1	248943908	.	C	G	0	PASS	DP=170;GPV=1;SPV=0.0028471;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:76,24:42,12:34,12
+chr10	1265691	.	C	G	0	PASS	DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:10,3:16,1
+chr10	3818912	.	T	TC	0	PASS	DP=37;GPV=1;SPV=0.001984;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,13:7,5:1,8
+chr10	4149533	.	G	C	0	PASS	DP=126;GPV=1;SPV=0.027754;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:55,7:28,4:27,3
+chr10	6155205	.	C	CTTTTT	0	PASS	DP=48;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,5:13,4:6,1
+chr10	6170702	.	AGG	A	0	PASS	DP=62;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,4:10,2:11,2
+chr10	6932014	.	CA	C	0	PASS	DP=47;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:10,12:6,8:4,4
+chr10	7220830	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:12,1:17,5
+chr10	8026028	.	T	A	0	PASS	DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:5,5:4,4
+chr10	8280630	.	A	T	0	PASS	DP=67;GPV=1;SPV=0.015156;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:10,3:19,7
+chr10	8422085	.	C	CTTTCTTTTTTT	0	PASS	DP=33;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:5,1:12,3
+chr10	8545427	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,4:2,1:4,3
+chr10	9358808	.	C	T	0	PASS	DP=71;GPV=1;SPV=1.1265e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:9,11:7,6
+chr10	10296730	.	C	CTCTTTTT	0	PASS	DP=17;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:1,3:4,1
+chr10	14209718	.	C	CA	0	PASS	DP=60;GPV=1;SPV=0.0030692;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:12,7:12,2
+chr10	15469418	.	C	G	0	PASS	DP=82;GPV=1;SPV=0.0030239;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:24,3:12,6
+chr10	16841910	.	C	CAAA	0	PASS	DP=41;GPV=1;SPV=0.30409;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,4:6,3:6,1
+chr10	18600978	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:8,1:2,3
+chr10	19064769	.	CA	C	0	PASS	DP=41;GPV=1;SPV=0.0086203;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:9,5:5,1
+chr10	19467802	.	T	A	0	PASS	DP=72;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:41:1,3:0,2:1,1
+chr10	19955074	.	A	ATT	0	PASS	DP=48;GPV=1;SPV=0.031815;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,7:12,6:4,1
+chr10	21343903	.	AAAAG	A	0	PASS	DP=29;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,5:7,4:5,1
+chr10	21704329	.	T	TTCTC	0	PASS	DP=38;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,5:10,2:8,3
+chr10	21881844	.	T	TA	0	PASS	DP=44;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:11,6:5,2
+chr10	23457003	.	T	TGTGTGTGCGC	0	PASS	DP=42;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,6:6,3:6,3
+chr10	23818343	.	TATA	T	0	PASS	DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:13,3:10,1
+chr10	24895253	.	C	CTTTTTT	0	PASS	DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,3:1,2:2,1
+chr10	24972517	.	A	T	0	PASS	DP=88;GPV=1;SPV=1.9991e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:26,15:10,4:16,11
+chr10	25639028	.	ATTTC	A	0	PASS	DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:6,2:17,2
+chr10	28836271	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:10,4:1,0:9,4
+chr10	29776765	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,5:3,1:14,4
+chr10	30410480	.	A	G	0	PASS	DP=102;GPV=1;SPV=9.1412e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:23,9:13,6
+chr10	30890083	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:8,5:4,1
+chr10	32438069	.	C	G	0	PASS	DP=81;GPV=1;SPV=9.6275e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:19,21:13,8:6,13
+chr10	33028330	.	CTT	C	0	PASS	DP=43;GPV=1;SPV=0.12337;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:8,2:16,3
+chr10	33121193	.	T	C	0	PASS	DP=81;GPV=1;SPV=4.2988e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:17,7:12,7
+chr10	33671715	.	A	ATATGAC	0	PASS	DP=32;GPV=1;SPV=0.0099416;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:5,4:4,1
+chr10	33671725	.	G	A	0	PASS	DP=25;GPV=1;SPV=0.0047431;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:0,4:5,1
+chr10	33671731	.	A	ATATATATATGAC	0	PASS	DP=29;GPV=1;SPV=0.0072239;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,4:2,3:1,1
+chr10	34645186	.	T	A	0	PASS	DP=75;GPV=1;SPV=0.019307;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:17,4:20,3
+chr10	35745310	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.001927;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:20,5:16,4
+chr10	36050368	.	A	T	0	PASS	DP=75;GPV=1;SPV=0.0056445;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:18,3:17,6
+chr10	36322330	.	G	A	0	PASS	DP=79;GPV=1;SPV=1.015e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:21,20:11,10:10,10
+chr10	36480667	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.013537;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:14,10:11,6
+chr10	37113363	.	T	C	0	PASS	DP=109;GPV=1;SPV=0.014496;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:47,11:19,8:28,3
+chr10	38327263	.	T	TTC	0	PASS	DP=42;GPV=1;SPV=0.0074752;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,9:4,4:2,5
+chr10	38496005	.	C	A	0	PASS	DP=59;GPV=1;SPV=0.033228;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:13,2:15,4
+chr10	38496006	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.027512;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,9:11,6:13,3
+chr10	38576386	.	AAATGG	A	0	PASS	DP=23;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,4:5,3:2,1
+chr10	38651476	.	CAT	C	0	PASS	DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:17,1:18,3
+chr10	38652470	.	T	G	0	PASS	DP=83;GPV=1;SPV=0.04533;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:16,3:13,5
+chr10	38689754	.	G	A	0	PASS	DP=164;GPV=1;SPV=0.00022978;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:76,13:42,6:34,7
+chr10	38923521	.	T	C	0	PASS	DP=336;GPV=1;SPV=0.0033879;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:177:157,20:87,10:70,10
+chr10	39835327	.	A	T	0	PASS	DP=294;GPV=1;SPV=0.041879;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:150:135,15:74,6:61,9
+chr10	40287592	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:6,3:23,3
+chr10	40300954	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.034849;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:9,1:22,3
+chr10	40691595	.	A	T	0	PASS	DP=79;GPV=1;SPV=0.041896;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:17,6:15,5
+chr10	40761927	.	A	C	0	PASS	DP=147;GPV=1;SPV=0.014577;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:69,9:27,1:42,8
+chr10	40857299	.	C	A	0	PASS	DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:0,0:4,4
+chr10	40884373	.	G	C	0	PASS	DP=166;GPV=1;SPV=0.0030742;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:67,19:12,5:55,14
+chr10	40892303	.	G	A	0	PASS	DP=588;GPV=1;SPV=0.025852;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:310:261,39:147,23:114,16
+chr10	40920706	.	C	G	0	PASS	DP=41;GPV=1;SPV=0.06379;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:14,3:2,2:12,1
+chr10	40963788	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:7,1:14,3
+chr10	40965940	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.0005505;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:17,9:9,1
+chr10	41104823	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:22,4:1,0
+chr10	41494604	.	C	G	0	PASS	DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:24,4:2,0
+chr10	41527518	.	A	C	0	PASS	DP=53;GPV=1;SPV=0.059209;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:11,3:15,2
+chr10	41584168	.	C	T	0	PASS	DP=669;GPV=1;SPV=0.022969;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:351:303,48:227,41:76,7
+chr10	41881947	.	CGAGTGTAATT	C	0	PASS	DP=310;GPV=1;SPV=0.030017;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:164:144,20:112,14:32,6
+chr10	41882734	.	T	C	0	PASS	DP=371;GPV=1;SPV=0.033617;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:208:176,32:93,21:83,11
+chr10	41891344	.	C	A	0	PASS	DP=80;GPV=1;SPV=0.031173;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:21,4:15,1
+chr10	41892391	.	A	T	0	PASS	DP=123;GPV=1;SPV=0.042405;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:54,7:29,2:25,5
+chr10	41896230	.	G	GGAATGGAATC	0	PASS	DP=169;GPV=1;SPV=0.018345;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:77,9:46,5:31,4
+chr10	41900107	.	A	T	0	PASS	DP=157;GPV=1;SPV=0.0011011;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:53,10:30,1:23,9
+chr10	41906114	.	C	CAATGG	0	PASS	DP=102;GPV=1;SPV=0.026485;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,7:22,4:12,3
+chr10	41912903	.	T	A	0	PASS	DP=251;GPV=1;SPV=0.031646;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:111,19:47,15:64,4
+chr10	41914068	.	G	A	0	PASS	DP=203;GPV=1;SPV=0.0015108;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:84,29:39,17:45,12
+chr10	42080954	.	C	T	0	PASS	DP=1854;GPV=1;SPV=0.0032918;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:979:878,99:59,15:819,84
+chr10	42130201	.	C	G	0	PASS	DP=604;GPV=1;SPV=0.010879;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:328:286,42:114,11:172,31
+chr10	42152600	.	GTATATC	G	0	PASS	DP=151;GPV=1;SPV=0.042771;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:61,16:24,3:37,13
+chr10	42182059	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.16534;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:26,3:23,2:3,1
+chr10	42213791	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.038396;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:17,1:4,6
+chr10	42213848	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.028463;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:14,1:5,4
+chr10	42281418	.	A	G	0	PASS	DP=157;GPV=1;SPV=0.029327;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:65,18:29,3:36,15
+chr10	42299381	.	T	C	0	PASS	DP=84;GPV=1;SPV=0.11288;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:32,4:20,2:12,2
+chr10	44878064	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.19205;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:15,5:9,2:6,3
+chr10	45391072	.	CCACGG	C	0	PASS	DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:4,5:5,2
+chr10	45749836	.	A	AAAAAAAATATATAT	0	PASS	DP=55;GPV=1;SPV=0.05321;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,8:15,1:10,7
+chr10	45823138	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.017469;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:6,3:5,5
+chr10	45889994	.	C	CA	0	PASS	DP=35;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:7,2:5,5
+chr10	45890429	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.0035718;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:15,1:9,7
+chr10	46408881	.	T	G	0	PASS	DP=129;GPV=1;SPV=0.0042791;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:59,8:33,3:26,5
+chr10	46660447	.	T	TA	0	PASS	DP=40;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:15,4:0,0
+chr10	46768125	.	G	A	0	PASS	DP=110;GPV=1;SPV=0.019877;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:25,10:18,3
+chr10	46935640	.	A	C	0	PASS	DP=71;GPV=1;SPV=0.046112;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:23,7:8,3
+chr10	46979530	.	A	G	0	PASS	DP=74;GPV=1;SPV=0.046521;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:14,3:22,2
+chr10	47235996	.	T	A	0	PASS	DP=81;GPV=1;SPV=5.3434e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:27,17:13,14:14,3
+chr10	47938554	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.034525;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:17,4:1,0
+chr10	47987548	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.042061;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:23,4:15,3
+chr10	48080905	.	A	C	0	PASS	DP=94;GPV=1;SPV=0.013329;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:20,6:21,3
+chr10	48928398	.	T	G	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:12,2:16,2
+chr10	49891621	.	ATATTTT	A	0	PASS	DP=31;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,4:2,2:2,2
+chr10	49962894	.	C	CT	0	PASS	DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:11,5:14,1
+chr10	50109548	.	G	T	0	PASS	DP=87;GPV=1;SPV=0.03763;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:19,8:15,2
+chr10	51464890	.	CA	C	0	PASS	DP=49;GPV=1;SPV=0.014937;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:11,8:8,2
+chr10	54853422	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.011736;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,6:19,3:4,3
+chr10	55235906	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:8,8:3,7:5,1
+chr10	55602627	.	C	G	0	PASS	DP=83;GPV=1;SPV=0.072974;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:45,5:16,1:29,4
+chr10	55609015	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.01056;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:18,2:13,9
+chr10	55830519	.	GA	G	0	PASS	DP=54;GPV=1;SPV=0.0029888;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:15,5:8,6
+chr10	55953998	.	CA	C	0	PASS	DP=47;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:17,2:2,2
+chr10	56858096	.	G	T	0	PASS	DP=85;GPV=1;SPV=6.9536e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:27,20:15,10:12,10
+chr10	57420264	.	CTTTT	C	0	PASS	DP=31;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:2,4:3,1
+chr10	58009272	.	CAAAA	C	0	PASS	DP=44;GPV=1;SPV=0.0073773;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,7:6,2
+chr10	59037349	.	A	C	0	PASS	DP=95;GPV=1;SPV=0.00022306;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:19,6:17,5
+chr10	59681738	.	TATG	T	0	PASS	DP=24;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,4:5,2:5,2
+chr10	60158685	.	C	CTTTTTTTTTTTT	0	PASS	DP=61;GPV=1;SPV=0.014013;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,8:9,7:8,1
+chr10	61263235	.	C	T	0	PASS	DP=72;GPV=1;SPV=5.3195e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:16,18:8,14:8,4
+chr10	63606263	.	T	TTTTCTTTCTTTCTTTTTC	0	PASS	DP=54;GPV=1;SPV=0.028555;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:6,3:12,5
+chr10	63861106	.	C	CGCGTGTGTGTGTGT	0	PASS	DP=48;GPV=1;SPV=0.0057417;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,7:5,1:3,6
+chr10	65087396	.	TAC	T	0	PASS	DP=37;GPV=1;SPV=0.37283;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,4:2,1:17,3
+chr10	67833444	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.060665;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,5:10,4:15,1
+chr10	68059870	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.014395;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:12,8:8,2
+chr10	68923937	.	CTTTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,5:2,4:8,1
+chr10	72283779	.	CAA	C	0	PASS	DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:4,7:8,2
+chr10	72454784	.	A	C	0	PASS	DP=57;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:3,2:1,1:2,1
+chr10	73250711	.	T	C	0	PASS	DP=75;GPV=1;SPV=1.1858e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:22,18:8,7:14,11
+chr10	73756899	.	AT	A	0	PASS	DP=36;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,6:5,1:8,5
+chr10	73833909	.	G	GT	0	PASS	DP=33;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,4:8,2:6,2
+chr10	74128124	.	AGGAAAAG	A	0	PASS	DP=34;GPV=1;SPV=0.22807;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,4:3,2:8,2
+chr10	74201684	.	C	G	0	PASS	DP=65;GPV=1;SPV=0.035087;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,6:12,2:14,4
+chr10	74760868	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:6,7:3,1
+chr10	75856489	.	C	CAAGT	0	PASS	DP=83;GPV=1;SPV=0.00014322;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:12,6:17,5
+chr10	76084364	.	ATTTT	A	0	PASS	DP=35;GPV=1;SPV=0.010792;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,2:5,3
+chr10	76379161	.	T	TTGTG	0	PASS	DP=49;GPV=1;SPV=0.0068919;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:8,2:12,6
+chr10	79183824	.	TCC	T	0	PASS	DP=75;GPV=1;SPV=0.0010762;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:14,5:12,3
+chr10	81167688	.	C	CT	0	PASS	DP=86;GPV=1;SPV=0.0051557;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:25,10:11,7:14,3
+chr10	81693963	.	GAT	G	0	PASS	DP=25;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:2,2:6,4
+chr10	82031071	.	C	A	0	PASS	DP=82;GPV=1;SPV=2.2667e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:23,19:14,10:9,9
+chr10	83081279	.	A	G	0	PASS	DP=93;GPV=1;SPV=4.0149e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:29,19:10,7:19,12
+chr10	84007300	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:9,2:3,2
+chr10	84018271	.	A	T	0	PASS	DP=70;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:14,4:7,2:7,2
+chr10	84884296	.	T	A	0	PASS	DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:12,5:18,5
+chr10	85854248	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.00061273;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:22,5:17,6
+chr10	86939833	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.053518;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:25,7:12,3:13,4
+chr10	87354692	.	C	T	0	PASS	DP=104;GPV=1;SPV=0.012964;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:20,5:22,11
+chr10	87389196	.	A	G	0	PASS	DP=100;GPV=1;SPV=0.0076335;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:48,8:24,7:24,1
+chr10	87390198	.	A	G	0	PASS	DP=103;GPV=1;SPV=0.0043761;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,8:15,6:31,2
+chr10	87418174	.	TTATA	T	0	PASS	DP=79;GPV=1;SPV=0.013809;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:17,5:17,1
+chr10	87523518	.	T	A	0	PASS	DP=71;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:3,3:2,1:1,2
+chr10	87701339	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.10738;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,4:18,2:13,2
+chr10	89576802	.	G	A	0	PASS	DP=80;GPV=1;SPV=4.9339e-09;SS=2;SSC=83;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:19,24:10,12:9,12
+chr10	90976006	.	A	AAAAAAAAAAAAG	0	PASS	DP=79;GPV=1;SPV=0.0010173;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:23,17:12,11:11,6
+chr10	92199392	.	A	C	0	PASS	DP=59;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:4,2:1,1:3,1
+chr10	92948573	.	C	CACTACTACTACTACT	0	PASS	DP=58;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:16,5:14,3:2,2
+chr10	94883510	.	C	CA	0	PASS	DP=72;GPV=1;SPV=0.00064847;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:17,8:8,5
+chr10	96817689	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,7:2,4:4,3
+chr10	97657811	.	ACTGTCACCACCATCCATCTCCAGAGCTCTTTTTGTTGTTGTTGAGACCGAGTCTTGCT	A	0	PASS	DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:19,3:11,1
+chr10	98386546	.	C	CTTTT	0	PASS	DP=53;GPV=1;SPV=0.00024277;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,14:6,10:6,4
+chr10	103265049	.	CAAAAAAAAAAAAAAA	C	0	PASS	DP=39;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,10:8,5:3,5
+chr10	103278903	.	G	GCACACACACACA	0	PASS	DP=53;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:13,9:7,1
+chr10	104534877	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,5:11,3:3,2
+chr10	105771010	.	G	T	0	PASS	DP=88;GPV=1;SPV=5.8491e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:8,10:11,5
+chr10	106899591	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:8,4:6,2
+chr10	109059631	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.0001197;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:17,3:11,8
+chr10	109208025	.	AT	A	0	PASS	DP=55;GPV=1;SPV=0.015273;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,1:10,4
+chr10	111119516	.	GCT	G	0	PASS	DP=55;GPV=1;SPV=0.032855;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:15,9:6,1
+chr10	112966194	.	A	T	0	PASS	DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:3,4:8,4
+chr10	113803008	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.1538;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:21,4:10,1:11,3
+chr10	113948684	.	TATATATATATATATATATATACACAC	T	0	PASS	DP=21;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:3,3:0,2
+chr10	114066524	.	C	A	0	PASS	DP=82;GPV=1;SPV=0.0021577;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:15,3:17,5
+chr10	114202173	.	G	A	0	PASS	DP=89;GPV=1;SPV=3.8111e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:31,18:11,12:20,6
+chr10	115383511	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.0045408;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:13,5:20,3
+chr10	118949359	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:2,3:1,1
+chr10	119411842	.	CTT	C	0	PASS	DP=21;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,2:2,1:3,1
+chr10	119955275	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.0003337;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,10:3,8:5,2
+chr10	120368900	.	C	T	0	PASS	DP=79;GPV=1;SPV=3.0775e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:11,11:15,2
+chr10	121636873	.	C	CTTTT	0	PASS	DP=53;GPV=1;SPV=0.022531;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,14:15,10:8,4
+chr10	121667273	.	G	T	0	PASS	DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:19,1:15,4
+chr10	122423110	.	A	T	0	PASS	DP=70;GPV=1;SPV=0.026993;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:15,9:8,3:7,6
+chr10	122681334	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:5,2:3,4
+chr10	123181855	.	A	AT	0	PASS	DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:11,2:4,4
+chr10	123653723	.	AG	A	0	PASS	DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:5,4:5,5
+chr10	123738268	.	T	G	0	PASS	DP=71;GPV=1;SPV=0.065402;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:20,4:20,2
+chr10	124158737	.	T	G	0	PASS	DP=75;GPV=1;SPV=0.033359;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:14,3:20,2
+chr10	125892689	.	G	A	0	PASS	DP=171;GPV=1;SPV=0.027462;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:75,15:23,2:52,13
+chr10	127045200	.	T	TA	0	PASS	DP=28;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,8:7,6:1,2
+chr10	127093202	.	C	CTTTCTTTCTTTCTTTCTTTCTTTG	0	PASS	DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:1,1:11,3
+chr10	129841050	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.0006809;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:15,7:16,3
+chr10	130530431	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.002853;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:17,6:7,6
+chr10	131675469	.	C	T	0	PASS	DP=95;GPV=1;SPV=2.2497e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:31,22:15,10:16,12
+chr10	133423970	.	A	AGGAGCGCCGCGGTG	0	PASS	DP=67;GPV=1;SPV=0.0019513;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,15:16,6:4,9
+chr10	133464329	.	G	GC	0	PASS	DP=70;GPV=1;SPV=0.050579;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:18,3:12,1
+chr11	180483	.	A	C	0	PASS	DP=49;GPV=1;SPV=0.019748;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:9,9:8,2
+chr11	287677	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:13,1:3,3
+chr11	1087343	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:4,3:9,2
+chr11	1116392	.	CGGGCTGTTCCCTGAGTGTGCTGGGCT	C	0	PASS	DP=78;GPV=1;SPV=0.030923;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,8:23,4:12,4
+chr11	1417831	.	G	T	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:5,1:1,1
+chr11	1597972	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.1671;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,5:8,4:10,1
+chr11	3111965	.	GTGTGCATATGTGTGCGCGCA	G	0	PASS	DP=65;GPV=1;SPV=0.012858;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:10,8:16,1
+chr11	3782570	.	A	AT	0	PASS	DP=58;GPV=1;SPV=0.0045225;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,13:17,8:5,5
+chr11	3920129	.	T	A	0	PASS	DP=86;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:6,2:2,1:4,1
+chr11	4045762	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:8,2:3,2
+chr11	4327773	.	C	T	0	PASS	DP=83;GPV=1;SPV=5.1287e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:19,6:8,10
+chr11	4895219	.	AAATTCTTTATATACATCATTAC	A	0	PASS	DP=84;GPV=1;SPV=0.0033007;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:32,19:18,12:14,7
+chr11	4898833	.	G	C	0	PASS	DP=62;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:9,6:4,2:5,4
+chr11	5838847	.	C	A	0	PASS	DP=80;GPV=1;SPV=1.3989e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:23,16:11,6:12,10
+chr11	5870589	.	ACC	A	0	PASS	DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:15,2:6,3
+chr11	6301244	.	C	T	0	PASS	DP=94;GPV=1;SPV=7.7872e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:36,19:19,8:17,11
+chr11	6578652	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.056165;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:14,1:19,4
+chr11	8314484	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:11,4:8,3:3,1
+chr11	8462402	.	C	CAT	0	PASS	DP=50;GPV=1;SPV=0.010978;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,8:9,4:6,4
+chr11	9375041	.	C	CAA	0	PASS	DP=45;GPV=1;SPV=0.0204;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,10:11,8:6,2
+chr11	10504138	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.040341;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:12,4:14,2
+chr11	10731941	.	A	ATG	0	PASS	DP=50;GPV=1;SPV=0.038709;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:16,4:7,2
+chr11	11463225	.	C	G	0	PASS	DP=69;GPV=1;SPV=0.0095002;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:10,5:15,3
+chr11	13363127	.	CATATATAT	C	0	PASS	DP=30;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,10:2,6:5,4
+chr11	13534505	.	G	A	0	PASS	DP=97;GPV=1;SPV=1.1462e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:30,21:12,13:18,8
+chr11	14841349	.	A	C	0	PASS	DP=53;GPV=1;SPV=0.0025048;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:7,2:12,6
+chr11	15651738	.	C	CTT	0	PASS	DP=40;GPV=1;SPV=0.0067861;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,9:4,1:7,8
+chr11	15998454	.	TG	T	0	PASS	DP=54;GPV=1;SPV=0.042668;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:6,5:9,2
+chr11	16196830	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:8,2:4,2
+chr11	16994530	.	G	A	0	PASS	DP=80;GPV=1;SPV=3.8991e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:20,20:13,10:7,10
+chr11	18622101	.	A	AAAAAAAAAAAC	0	PASS	DP=23;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,4:2,1:0,3
+chr11	23317106	.	C	A	0	PASS	DP=43;GPV=1;SPV=0.019285;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:4,3:9,1
+chr11	24328584	.	T	C	0	PASS	DP=90;GPV=1;SPV=0.034902;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:23,2:19,3
+chr11	24649978	.	C	G	0	PASS	DP=69;GPV=1;SPV=0.023995;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:15,3:14,5
+chr11	24918965	.	T	C	0	PASS	DP=178;GPV=1;SPV=0.0072049;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:87,14:41,3:46,11
+chr11	27496001	.	A	AAC	0	PASS	DP=66;GPV=1;SPV=0.0006722;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:14,5:12,7
+chr11	28310962	.	GTGGGT	G	0	PASS	DP=45;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,4:18,4:0,0
+chr11	30103519	.	G	A	0	PASS	DP=41;GPV=1;SPV=0.00031821;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,10:6,8:0,2
+chr11	31142102	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.0058719;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:19,3:13,3
+chr11	31204428	.	GA	G	0	PASS	DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:11,6:10,6
+chr11	32201444	.	T	C	0	PASS	DP=64;GPV=1;SPV=7.7194e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:23,16:10,6:13,10
+chr11	35894837	.	C	CTT	0	PASS	DP=18;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:2,3:2,1
+chr11	36054840	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.033054;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,7:3,2:6,5
+chr11	37881192	.	TA	T	0	PASS	DP=52;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:1,2:1,1:0,1
+chr11	39220874	.	AGAAG	A	0	PASS	DP=27;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,5:3,3:3,2
+chr11	40665325	.	A	T	0	PASS	DP=21;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:0,3:0,2:0,1
+chr11	40851180	.	GA	G	0	PASS	DP=86;GPV=1;SPV=0.00070074;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:14,2:20,8
+chr11	41182848	.	TAA	T	0	PASS	DP=75;GPV=1;SPV=0.0038457;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:21,12:11,7:10,5
+chr11	41460454	.	C	T	0	PASS	DP=62;GPV=1;SPV=1.1624e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,17:8,7:11,10
+chr11	41655087	.	T	TCTC	0	PASS	DP=29;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,5:1,1:9,4
+chr11	43619164	.	G	GAT	0	PASS	DP=36;GPV=1;SPV=0.0041629;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:8,3:4,6
+chr11	43619215	.	A	AAT	0	PASS	DP=37;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:9,3:7,6
+chr11	44379144	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:7,4:4,2
+chr11	46271364	.	G	A	0	PASS	DP=76;GPV=1;SPV=5.9715e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:10,6:15,6
+chr11	47046665	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:6,4:9,2
+chr11	48500539	.	C	G	0	PASS	DP=88;GPV=1;SPV=7.0452e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:28,20:17,14:11,6
+chr11	49002488	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:12,2:15,2
+chr11	49926902	.	A	G	0	PASS	DP=86;GPV=1;SPV=0.00010628;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:21,7:13,7
+chr11	50023502	.	C	A	0	PASS	DP=75;GPV=1;SPV=0.036467;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:18,1:14,6
+chr11	51572510	.	G	T	0	PASS	DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:3,0:30,4
+chr11	51664424	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:5,1:21,3
+chr11	52107622	.	T	C	0	PASS	DP=201;GPV=1;SPV=0.029527;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:95,14:37,8:58,6
+chr11	52129259	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.033358;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:13,1:21,9
+chr11	53175444	.	A	T	0	PASS	DP=36;GPV=1;SPV=0.048962;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:4,2:7,3
+chr11	53602042	.	A	G	0	PASS	DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:6,4:0,0
+chr11	54234630	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,0:8,4
+chr11	54270934	.	C	A	0	PASS	DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,3:3,2
+chr11	54334166	.	A	C	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr11	54382388	.	G	T	0	PASS	DP=106;GPV=1;SPV=0.043161;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:49,7:38,4:11,3
+chr11	54382389	.	G	T	0	PASS	DP=104;GPV=1;SPV=0.038418;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:47,7:36,4:11,3
+chr11	54392352	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.074501;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:11,5:3,2
+chr11	54416246	.	A	T	0	PASS	DP=89;GPV=1;SPV=0.045941;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:5,2:39,3
+chr11	55873506	.	C	A	0	PASS	DP=121;GPV=1;SPV=3.0487e-10;SS=2;SSC=95;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:38,34:20,23:18,11
+chr11	56157088	.	A	T	0	PASS	DP=69;GPV=1;SPV=1.5006e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:7,10:14,4
+chr11	56267744	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.00092696;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,8:5,6:3,2
+chr11	57185270	.	CTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.0059696;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,8:5,7:3,1
+chr11	59554905	.	A	AAG	0	PASS	DP=39;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,7:12,6:5,1
+chr11	59554927	.	GA	G	0	PASS	DP=42;GPV=1;SPV=0.056428;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:17,5:4,1
+chr11	60832412	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.00075779;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:9,7:14,2
+chr11	64022867	.	A	AT	0	PASS	DP=39;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,6:4,4:7,2
+chr11	64196395	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.022431;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,8:16,7:6,1
+chr11	64310536	.	GT	G	0	PASS	DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:7,3:11,1
+chr11	65734436	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,7:6,5:2,2
+chr11	66311088	.	AC	A	0	PASS	DP=76;GPV=1;SPV=0.21429;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:2,2:2,2:0,0
+chr11	68219436	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,4:10,1:6,3
+chr11	69274380	.	C	G	0	PASS	DP=83;GPV=1;SPV=6.8415e-10;SS=2;SSC=91;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:19,28:9,16:10,12
+chr11	71168031	.	G	C	0	PASS	DP=47;GPV=1;SPV=0.038682;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:14,7:6,2
+chr11	72201585	.	T	TAC	0	PASS	DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:12,1:10,3
+chr11	73253497	.	C	CATAT	0	PASS	DP=29;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,6:5,5:2,1
+chr11	75757189	.	AAAAG	A	0	PASS	DP=67;GPV=1;SPV=0.031686;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,9:8,4:10,5
+chr11	77314398	.	A	ATATATATATATAT	0	PASS	DP=20;GPV=1;SPV=0.10909;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,2:0,0:2,2
+chr11	79643065	.	GGGAA	G	0	PASS	DP=32;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:9,4:3,3
+chr11	79696275	.	C	CATAT	0	PASS	DP=54;GPV=1;SPV=0.014848;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:12,5:12,2
+chr11	83148729	.	G	A	0	PASS	DP=76;GPV=1;SPV=2.3326e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:14,7:10,6
+chr11	84313641	.	A	AAAAGAAAGAAAGAAAGAAAGAAAGAAAG	0	PASS	DP=28;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:0,4:0,3:0,1
+chr11	84483430	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:8,5:8,3
+chr11	84990342	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.0019129;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:13,4:15,5
+chr11	85232357	.	C	T	0	PASS	DP=92;GPV=1;SPV=2.1719e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:27,25:9,9:18,16
+chr11	85630075	.	C	T	0	PASS	DP=80;GPV=1;SPV=4.9752e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:10,7:9,11
+chr11	85816915	.	C	CAAAA	0	PASS	DP=40;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,7:6,5:3,2
+chr11	86110351	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.047306;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:10,8:14,3
+chr11	86319242	.	A	ATTTTTTTT	0	PASS	DP=28;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,9:0,6:6,3
+chr11	86328929	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:1,2:1,1:0,1
+chr11	87080165	.	A	AGT	0	PASS	DP=43;GPV=1;SPV=0.00012649;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:3,7:8,7
+chr11	87675968	.	A	AT	0	PASS	DP=83;GPV=1;SPV=3.3064e-06;SS=2;SSC=54;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:11,9:14,6
+chr11	88928484	.	GTATATATGTA	G	0	PASS	DP=65;GPV=1;SPV=0.07299;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,4:9,2:21,2
+chr11	89751342	.	G	GACTA	0	PASS	DP=49;GPV=1;SPV=0.045385;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:8,3:8,4
+chr11	91053193	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.03148;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:16,9:7,4:9,5
+chr11	91525961	.	AATT	A	0	PASS	DP=66;GPV=1;SPV=0.056777;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:14,1:15,3
+chr11	92478948	.	C	CTTTCT	0	PASS	DP=52;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:4,5:16,3
+chr11	92754700	.	CA	C	0	PASS	DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,4:3,1
+chr11	96522974	.	C	A	0	PASS	DP=29;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,2:1,1:6,1
+chr11	96585172	.	AT	A	0	PASS	DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:9,1:8,3
+chr11	96800198	.	C	T	0	PASS	DP=72;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:40:0,2:0,1:0,1
+chr11	98636046	.	AT	A	0	PASS	DP=89;GPV=1;SPV=5.3143e-07;SS=2;SSC=62;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:30,23:21,11:9,12
+chr11	104119230	.	T	C	0	PASS	DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:0,4:4,1
+chr11	105172422	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.017391;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,7:2,3:7,4
+chr11	106272580	.	ATATAT	A	0	PASS	DP=51;GPV=1;SPV=0.050554;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:16,2:8,3
+chr11	106272616	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.047988;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,5:9,2:12,3
+chr11	108241742	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.0037594;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:3,8:2,3:1,5
+chr11	110215369	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.044583;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,7:4,3:10,4
+chr11	112084799	.	C	CTTT	0	PASS	DP=46;GPV=1;SPV=0.016961;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,9:8,4:8,5
+chr11	112095884	.	G	T	0	PASS	DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:5,3:15,1
+chr11	112273033	.	TCTTTCCTTCTTC	T	0	PASS	DP=58;GPV=1;SPV=0.0094722;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:13,1:13,7
+chr11	113894392	.	C	CAAAAAAAAAA	0	PASS	DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:10,8:7,1
+chr11	115134000	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.02121;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:14,9:6,2:8,7
+chr11	115257841	.	GCAT	G	0	PASS	DP=85;GPV=1;SPV=1.3324e-05;SS=2;SSC=48;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,14:15,7:12,7
+chr11	116818336	.	TA	T	0	PASS	DP=52;GPV=1;SPV=0.036166;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:12,4:13,2
+chr11	117329839	.	C	CT	0	PASS	DP=44;GPV=1;SPV=0.012248;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:13,4:6,5
+chr11	117769222	.	TTGTATATATTATATATTTTATATA	T	0	PASS	DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:3,3:6,1
+chr11	120943107	.	T	TACACAC	0	PASS	DP=51;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:12,9:7,6:5,3
+chr11	122167018	.	C	CAT	0	PASS	DP=37;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:6,11:3,8:3,3
+chr11	123318282	.	A	T	0	PASS	DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:21,5:12,1
+chr11	123704349	.	C	T	0	PASS	DP=79;GPV=1;SPV=1.6295e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:10,8:13,4
+chr11	124317257	.	TTG	T	0	PASS	DP=59;GPV=1;SPV=0.0084125;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,11:10,7:7,4
+chr11	125401768	.	T	A	0	PASS	DP=97;GPV=1;SPV=0.026556;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:52,7:16,5:36,2
+chr11	125665869	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:2,2:7,4
+chr11	126131217	.	A	ATGTGTGTGTGTGTG	0	PASS	DP=44;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:5,5:9,4
+chr11	126683357	.	A	T	0	PASS	DP=72;GPV=1;SPV=1.6465e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,20:11,9:11,11
+chr11	127323554	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,7:9,5:8,2
+chr11	127799896	.	TTG	T	0	PASS	DP=61;GPV=1;SPV=0.01106;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:11,2:5,7
+chr11	129095191	.	C	T	0	PASS	DP=87;GPV=1;SPV=1.0506e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,18:15,10:8,8
+chr11	129564218	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.019156;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:13,4:9,4
+chr11	130090969	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:16,1:17,3
+chr11	130294538	.	CA	C	0	PASS	DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:20,4:2,0
+chr11	130590053	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.032575;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:9,2:12,5
+chr11	131003590	.	GTGTTTTTTTTTT	G	0	PASS	DP=19;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,5:2,4:2,1
+chr11	131265322	.	GAT	G	0	PASS	DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:9,3:10,2
+chr11	131265436	.	C	A	0	PASS	DP=33;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:8,3:8,3
+chr11	131577151	.	A	G	0	PASS	DP=93;GPV=1;SPV=3.768e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:32,17:13,8:19,9
+chr11	131680400	.	C	T	0	PASS	DP=45;GPV=1;SPV=0.0972;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:10,4:14,1
+chr11	133766032	.	T	C	0	PASS	DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:31,17:19,7:12,10
+chr11	134284924	.	CT	C	0	PASS	DP=35;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,9:6,6:4,3
+chr11	134840333	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.11818;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:25,3:13,2:12,1
+chr12	44285	.	T	C	0	PASS	DP=100;GPV=1;SPV=0.042124;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:21,1:17,6
+chr12	748212	.	A	T	0	PASS	DP=30;GPV=1;SPV=0.1866;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:4,1:7,3
+chr12	4874098	.	A	G	0	PASS	DP=70;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:11,4:5,2:6,2
+chr12	5489833	.	G	T	0	PASS	DP=91;GPV=1;SPV=1.9282e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:32,20:14,12:18,8
+chr12	9284447	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.017823;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:48,12:22,6:26,6
+chr12	9308117	.	C	T	0	PASS	DP=101;GPV=1;SPV=0.016746;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:24,1:22,8
+chr12	9607334	.	TC	T	0	PASS	DP=47;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:8,2:13,4
+chr12	9869858	.	CAA	C	0	PASS	DP=72;GPV=1;SPV=0.033575;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:19,1:17,5
+chr12	11938175	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.0054163;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,1:5,3
+chr12	13016392	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.016493;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:12,5:7,1
+chr12	13445435	.	C	T	0	PASS	DP=73;GPV=1;SPV=1.6036e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:19,20:9,10:10,10
+chr12	13776177	.	C	G	0	PASS	DP=89;GPV=1;SPV=1.5071e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:25,25:9,12:16,13
+chr12	14235266	.	C	T	0	PASS	DP=97;GPV=1;SPV=2.606e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,17:15,8:18,9
+chr12	14323950	.	G	C	0	PASS	DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:6,1:0,2
+chr12	14481935	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.044629;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:12,3:17,1
+chr12	17161030	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.00029978;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:26,14:13,7:13,7
+chr12	17237002	.	T	C	0	PASS	DP=44;GPV=1;SPV=0.11628;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:19,3:14,1:5,2
+chr12	19280036	.	GT	G	0	PASS	DP=34;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,5:4,1
+chr12	19896768	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.04058;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:14,2:12,3
+chr12	21555502	.	T	G	0	PASS	DP=71;GPV=1;SPV=2.5408e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:22,13:11,7:11,6
+chr12	22303848	.	A	C	0	PASS	DP=68;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:7,2:5,1:2,1
+chr12	22895817	.	T	A	0	PASS	DP=79;GPV=1;SPV=2.1151e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:26,20:13,8:13,12
+chr12	26617691	.	G	A	0	PASS	DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:14,3:1,1
+chr12	30915287	.	C	T	0	PASS	DP=115;GPV=1;SPV=0.014385;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:52,6:25,3:27,3
+chr12	31685810	.	AG	A	0	PASS	DP=33;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:1,4:12,1
+chr12	31685815	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,3:4,1
+chr12	32061587	.	CTATATATATATA	C	0	PASS	DP=24;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:2,3:5,1
+chr12	32148032	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.0013413;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:18,4:14,6
+chr12	33153456	.	C	A	0	PASS	DP=71;GPV=1;SPV=0.0021888;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:13,3:16,6
+chr12	33475345	.	C	T	0	PASS	DP=76;GPV=1;SPV=6.7478e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:7,4:13,12
+chr12	34836788	.	T	A	0	PASS	DP=41;GPV=1;SPV=0.011343;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:12,7:2,3
+chr12	34915929	.	T	A	0	PASS	DP=373;GPV=1;SPV=0.012968;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:190:169,21:150,20:19,1
+chr12	35245095	.	G	A	0	PASS	DP=149;GPV=1;SPV=0.00069823;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:68,15:38,10:30,5
+chr12	36205455	.	G	C	0	PASS	DP=364;GPV=1;SPV=0.024344;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:204:181,23:118,5:63,18
+chr12	36239917	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr12	36247818	.	A	C	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,3:3,1
+chr12	36381030	.	A	T	0	PASS	DP=45;GPV=1;SPV=0.039138;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,5:11,4:8,1
+chr12	38468208	.	G	A	0	PASS	DP=75;GPV=1;SPV=4.4106e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:23,16:13,6:10,10
+chr12	40113195	.	A	C	0	PASS	DP=78;GPV=1;SPV=5.2636e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,15:15,7:14,8
+chr12	40602940	.	A	G	0	PASS	DP=30;GPV=1;SPV=0.092308;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,4:2,2:3,2
+chr12	40760042	.	C	A	0	PASS	DP=51;GPV=1;SPV=0.0086626;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:8,4:8,1
+chr12	41458994	.	TGAGGAATTAGGTTTGAGATCAGAGTTCAAAG	T	0	PASS	DP=52;GPV=1;SPV=0.0047364;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:9,7:14,4
+chr12	41673678	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.0096038;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:16,2:5,8
+chr12	43161497	.	G	GTTTTT	0	PASS	DP=46;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:8,10:4,7:4,3
+chr12	44447451	.	TA	T	0	PASS	DP=85;GPV=1;SPV=0.020567;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,11:21,3:21,8
+chr12	44862859	.	G	C	0	PASS	DP=71;GPV=1;SPV=0.00013315;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:29,19:14,12:15,7
+chr12	45554574	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,3:14,2
+chr12	45561590	.	TTTCC	T	0	PASS	DP=55;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:13,8:6,4:7,4
+chr12	46089097	.	C	CTT	0	PASS	DP=40;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:6,1:11,4
+chr12	47232905	.	TTTTA	T	0	PASS	DP=70;GPV=1;SPV=0.002519;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:7,12:15,3
+chr12	47634583	.	T	C	0	PASS	DP=16;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,2:2,1:1,1
+chr12	48186521	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:13,2:8,2
+chr12	48186530	.	TGTATATGTGC	T	0	PASS	DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:13,2:21,2
+chr12	48207769	.	C	CT	0	PASS	DP=29;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,6:1,3:2,3
+chr12	48540100	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,9:9,8:2,1
+chr12	48635402	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.038921;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,5:0,2:7,3
+chr12	49004813	.	CTGTG	C	0	PASS	DP=60;GPV=1;SPV=0.00012936;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,17:8,9:9,8
+chr12	49880551	.	CGT	C	0	PASS	DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:7,1:10,3
+chr12	50754334	.	T	TC	0	PASS	DP=55;GPV=1;SPV=0.0042405;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:10,8:7,5
+chr12	50872860	.	AT	A	0	PASS	DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:14,1:9,4
+chr12	50872864	.	C	CG	0	PASS	DP=52;GPV=1;SPV=0.031932;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:17,1:9,6
+chr12	50949526	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,5:4,1
+chr12	52745107	.	G	A	0	PASS	DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,2:11,2
+chr12	52938136	.	C	CTATA	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:1,3:4,1
+chr12	55100164	.	C	A	0	PASS	DP=47;GPV=1;SPV=0.013049;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:4,6:11,5
+chr12	55411261	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.1253;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:20,3:12,2
+chr12	56363209	.	A	T	0	PASS	DP=57;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,4:17,1:7,3
+chr12	58373220	.	C	A	0	PASS	DP=97;GPV=1;SPV=3.9106e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:28,21:11,8:17,13
+chr12	59013656	.	C	T	0	PASS	DP=92;GPV=1;SPV=6.2842e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:29,26:8,19:21,7
+chr12	59486352	.	G	GTATA	0	PASS	DP=37;GPV=1;SPV=0.027005;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:6,4:7,6
+chr12	60694394	.	C	T	0	PASS	DP=78;GPV=1;SPV=2.4229e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:28,16:18,4:10,12
+chr12	62507315	.	C	CTT	0	PASS	DP=60;GPV=1;SPV=0.020181;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,9:7,3:14,6
+chr12	62939616	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,7:5,5:0,2
+chr12	63538702	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.02161;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:26,7:20,2
+chr12	64258945	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:5,2:5,2
+chr12	64288489	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.016203;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:12,4:3,4
+chr12	65639747	.	T	TCTCTCTGACACA	0	PASS	DP=44;GPV=1;SPV=0.00052506;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,11:6,7:4,4
+chr12	65639748	.	G	C	0	PASS	DP=38;GPV=1;SPV=0.00096036;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,12:6,7:3,5
+chr12	68277320	.	A	G	0	PASS	DP=58;GPV=1;SPV=0.048259;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:17,3:7,1
+chr12	68417459	.	G	GAA	0	PASS	DP=53;GPV=1;SPV=0.064826;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:19,1:4,3
+chr12	68450327	.	T	TTA	0	PASS	DP=18;GPV=1;SPV=0.0037707;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,7:2,3:1,4
+chr12	68528198	.	CTTT	C	0	PASS	DP=23;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:2,4:2,3:0,1
+chr12	68937641	.	G	A	0	PASS	DP=86;GPV=1;SPV=1.277e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,19:16,10:12,9
+chr12	69357532	.	C	CTT	0	PASS	DP=40;GPV=1;SPV=0.073359;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,4:8,2:8,2
+chr12	69817653	.	T	TACACACACACACAC	0	PASS	DP=55;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:10,11:5,7:5,4
+chr12	70018140	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,2:5,2
+chr12	71468709	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.0069996;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,7:4,6:2,1
+chr12	73061526	.	AAT	A	0	PASS	DP=41;GPV=1;SPV=0.0051416;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:8,6:7,4
+chr12	73488896	.	G	A	0	PASS	DP=67;GPV=1;SPV=3.6127e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,16:11,8:8,8
+chr12	76077980	.	C	CAA	0	PASS	DP=46;GPV=1;SPV=0.0073947;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:7,9:4,1
+chr12	77946260	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:19,4:11,1:8,3
+chr12	80962382	.	AC	A	0	PASS	DP=70;GPV=1;SPV=0.047571;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:26,1:8,4
+chr12	81145358	.	G	A	0	PASS	DP=98;GPV=1;SPV=1.9952e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:28,22:13,11:15,11
+chr12	81498080	.	G	A	0	PASS	DP=89;GPV=1;SPV=1.6776e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:28,23:15,10:13,13
+chr12	81562574	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.00082339;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:21,8:21,4
+chr12	82993260	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.0013338;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:15,7:24,4
+chr12	84352437	.	A	AT	0	PASS	DP=58;GPV=1;SPV=0.012731;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,7:12,4:13,3
+chr12	84554009	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:3,5:4,2
+chr12	85201243	.	C	CT	0	PASS	DP=47;GPV=1;SPV=0.0093112;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:11,6:5,3
+chr12	85860503	.	G	T	0	PASS	DP=33;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,2:3,1:4,1
+chr12	86433743	.	G	A	0	PASS	DP=83;GPV=1;SPV=5.1287e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:15,8:12,8
+chr12	87549406	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,3:6,3:0,0
+chr12	88548425	.	G	C	0	PASS	DP=77;GPV=1;SPV=3.4893e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,20:11,13:11,7
+chr12	88664963	.	A	ATGTGTG	0	PASS	DP=48;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:11,10:5,7:6,3
+chr12	89412848	.	T	TTCCTTCCTTTCC	0	PASS	DP=48;GPV=1;SPV=0.017166;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,7:5,1:14,6
+chr12	91240357	.	A	T	0	PASS	DP=93;GPV=1;SPV=5.8593e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:34,18:17,8:17,10
+chr12	92680235	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.040413;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:19,1:9,8
+chr12	92761625	.	AG	A	0	PASS	DP=62;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:14,6:9,4:5,2
+chr12	93548022	.	CCCTTCCTTCCTTCCTT	C	0	PASS	DP=48;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,8:6,3:8,5
+chr12	94692459	.	G	GTATATATAATA	0	PASS	DP=51;GPV=1;SPV=0.1056;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,5:19,4:8,1
+chr12	95216669	.	C	CAA	0	PASS	DP=41;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,4:7,3:3,1
+chr12	96086880	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:8,3:2,1
+chr12	96190492	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,3:7,1
+chr12	97144381	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.0056092;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:34,8:14,4:20,4
+chr12	97595809	.	G	T	0	PASS	DP=82;GPV=1;SPV=0.0019055;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:36,10:12,7:24,3
+chr12	100515057	.	C	T	0	PASS	DP=81;GPV=1;SPV=4.2346e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:12,8:18,7
+chr12	101185906	.	C	T	0	PASS	DP=79;GPV=1;SPV=1.2848e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:24,18:12,6:12,12
+chr12	101212484	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:8,11:5,9:3,2
+chr12	101591837	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.0154;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:6,3:16,6
+chr12	101614325	.	T	A	0	PASS	DP=85;GPV=1;SPV=0.053518;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:25,7:7,4:18,3
+chr12	101661915	.	A	AAAAGAAAGAAAGAAAG	0	PASS	DP=37;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:8,2:9,3
+chr12	106908276	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:5,3:1,2
+chr12	107196356	.	T	G	0	PASS	DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:6,1:13,3
+chr12	107999325	.	G	GTT	0	PASS	DP=49;GPV=1;SPV=0.040159;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:11,5:3,1
+chr12	108212615	.	A	T	0	PASS	DP=53;GPV=1;SPV=0.01641;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:12,3:10,3
+chr12	108347833	.	T	TTTTGTAAATATATA	0	PASS	DP=58;GPV=1;SPV=0.10313;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,4:14,2:11,2
+chr12	108425213	.	TTTTTGTTTTG	T	0	PASS	DP=62;GPV=1;SPV=0.0018135;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:2,6:15,8
+chr12	108490233	.	T	TAAA	0	PASS	DP=47;GPV=1;SPV=0.25822;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,5:15,3:11,2
+chr12	108712570	.	CA	C	0	PASS	DP=45;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:15,9:5,1
+chr12	109046092	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:3,7:3,1
+chr12	110392092	.	C	A	0	PASS	DP=46;GPV=1;SPV=0.071485;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,7:15,2:3,5
+chr12	110867438	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,3:8,1
+chr12	111616957	.	A	T	0	PASS	DP=62;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:4,2:4,1:0,1
+chr12	113976473	.	A	AAAG	0	PASS	DP=57;GPV=1;SPV=0.043024;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,9:7,2:13,7
+chr12	114367244	.	ACAAAAAAG	A	0	PASS	DP=59;GPV=1;SPV=0.16219;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:22,3:12,1
+chr12	114580338	.	C	CAA	0	PASS	DP=32;GPV=1;SPV=0.0032151;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:2,10:1,9:1,1
+chr12	114589716	.	C	CAAAAA	0	PASS	DP=31;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:6,4:2,1
+chr12	116120479	.	A	T	0	PASS	DP=47;GPV=1;SPV=0.027836;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,4:7,2:3,2
+chr12	118179207	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00035448;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:22,3:7,6
+chr12	118362317	.	T	TAAA	0	PASS	DP=45;GPV=1;SPV=0.025088;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:14,3:5,3
+chr12	118777194	.	A	T	0	PASS	DP=77;GPV=1;SPV=2.6323e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:22,21:12,12:10,9
+chr12	119160301	.	C	G	0	PASS	DP=81;GPV=1;SPV=0.049315;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:25,9:7,5:18,4
+chr12	119234527	.	CATATATATATAT	C	0	PASS	DP=32;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,6:5,5:1,1
+chr12	119456064	.	C	A	0	PASS	DP=45;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:16,11:7,7:9,4
+chr12	120952465	.	CAA	C	0	PASS	DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,9:5,7:8,2
+chr12	120960569	.	G	GA	0	PASS	DP=56;GPV=1;SPV=0.00018161;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,10:9,9:7,1
+chr12	122336415	.	A	T	0	PASS	DP=73;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:5,2:2,1:3,1
+chr12	122701007	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.0092671;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:13,5:11,8
+chr12	122712596	.	C	CAA	0	PASS	DP=54;GPV=1;SPV=0.006529;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,9:11,6:6,3
+chr12	123693376	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:3,3:11,3
+chr12	124134997	.	C	CTTT	0	PASS	DP=36;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,4:8,2:9,2
+chr12	124602540	.	C	CTT	0	PASS	DP=39;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,9:4,7:3,2
+chr12	125885746	.	T	C	0	PASS	DP=77;GPV=1;SPV=4.2952e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,15:14,9:14,6
+chr12	126289622	.	G	A	0	PASS	DP=76;GPV=1;SPV=6.5336e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:9,6:10,9
+chr12	127304833	.	A	T	0	PASS	DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:8,2:17,2
+chr12	128236113	.	G	A	0	PASS	DP=77;GPV=1;SPV=1.4921e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:13,8:9,4
+chr12	128841485	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.0077765;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,7:4,2:3,5
+chr12	128965732	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,7:11,2:6,5
+chr12	129241850	.	C	A	0	PASS	DP=73;GPV=1;SPV=0.00064966;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:16,5:13,6
+chr12	129514986	.	T	A	0	PASS	DP=85;GPV=1;SPV=1.9327e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:27,26:12,14:15,12
+chr12	129586993	.	T	A	0	PASS	DP=84;GPV=1;SPV=1.6403e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:24,20:11,13:13,7
+chr12	129877174	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.11988;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:17,1:16,4
+chr12	130015247	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:7,1:8,3
+chr12	131579543	.	CTCTCTGTACTGTGTCTG	C	0	PASS	DP=58;GPV=1;SPV=0.0053893;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,14:13,2:7,12
+chr12	132267812	.	C	CAT	0	PASS	DP=82;GPV=1;SPV=0.01279;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:14,7:18,7
+chr12	133237285	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.036709;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:13,5:9,4
+chr13	18339332	.	G	T	0	PASS	DP=47;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:18,4:1,0
+chr13	19710163	.	C	A	0	PASS	DP=82;GPV=1;SPV=0.0084761;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:19,3:17,4
+chr13	20283337	.	G	A	0	PASS	DP=100;GPV=1;SPV=1.2226e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:37,22:20,12:17,10
+chr13	21447930	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.043206;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:13,6:4,1
+chr13	21743410	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:6,1:8,3
+chr13	22215066	.	A	C	0	PASS	DP=65;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:5,3:3,1:2,2
+chr13	22625441	.	C	CATATAT	0	PASS	DP=22;GPV=1;SPV=0.043512;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,5:2,2:1,3
+chr13	22781019	.	T	TTG	0	PASS	DP=58;GPV=1;SPV=0.00023992;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,11:10,6:9,5
+chr13	22868769	.	TATA	T	0	PASS	DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:6,3:10,2
+chr13	24318682	.	T	C	0	PASS	DP=101;GPV=1;SPV=0.030381;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:45,10:24,6:21,4
+chr13	26178591	.	C	CGTGTGTGTGT	0	PASS	DP=21;GPV=1;SPV=0.11053;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:5,2:0,0
+chr13	28493115	.	C	CA	0	PASS	DP=87;GPV=1;SPV=4.1567e-05;SS=2;SSC=43;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:34,16:16,5:18,11
+chr13	28819747	.	A	AGCTGGG	0	PASS	DP=73;GPV=1;SPV=0.010181;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:25,9:8,3
+chr13	30928825	.	G	A	0	PASS	DP=102;GPV=1;SPV=6.8293e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:20,2:17,10
+chr13	32405892	.	CTT	C	0	PASS	DP=42;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,6:9,3:8,3
+chr13	32436785	.	C	CA	0	PASS	DP=33;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,5:6,4:3,1
+chr13	32631118	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.048309;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:9,7:8,3:1,4
+chr13	34885994	.	A	C	0	PASS	DP=51;GPV=1;SPV=0.043479;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:14,7:5,2
+chr13	35010753	.	T	A	0	PASS	DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:4,4:6,1
+chr13	36009672	.	G	T	0	PASS	DP=40;GPV=1;SPV=0.29987;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:14,2:12,2
+chr13	36869777	.	C	T	0	PASS	DP=70;GPV=1;SPV=2.1223e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:10,8:10,4
+chr13	37259431	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.0063578;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:10,3:4,3
+chr13	38646241	.	C	T	0	PASS	DP=74;GPV=1;SPV=0.0011256;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:15,4:13,5
+chr13	38866667	.	C	CA	0	PASS	DP=55;GPV=1;SPV=0.00043265;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:17,10:12,9:5,1
+chr13	39114436	.	T	G	0	PASS	DP=100;GPV=1;SPV=3.6897e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:30,22:20,11:10,11
+chr13	39490095	.	CAA	C	0	PASS	DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:21,3:13,1
+chr13	39562603	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.025505;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,8:14,4:7,4
+chr13	39562605	.	TAC	T	0	PASS	DP=64;GPV=1;SPV=0.036217;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,8:16,3:9,5
+chr13	41447470	.	A	AT	0	PASS	DP=129;GPV=1;SPV=0.00010853;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:50,24:24,8:26,16
+chr13	43940571	.	TTTC	T	0	PASS	DP=63;GPV=1;SPV=0.03601;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:8,4:15,4
+chr13	44717446	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.0098053;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:15,4:16,2
+chr13	45103866	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:7,7:5,5
+chr13	45938615	.	G	A	0	PASS	DP=78;GPV=1;SPV=3.542e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:12,7:11,8
+chr13	46635467	.	C	CTT	0	PASS	DP=37;GPV=1;SPV=0.023879;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:4,3:10,3
+chr13	46876399	.	TATATA	T	0	PASS	DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:13,3:8,3
+chr13	48834704	.	C	A	0	PASS	DP=78;GPV=1;SPV=0.22206;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:26,4:18,3:8,1
+chr13	49620861	.	TA	T	0	PASS	DP=66;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,4:15,3:10,1
+chr13	51371263	.	C	G	0	PASS	DP=82;GPV=1;SPV=3.5378e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,19:14,11:14,8
+chr13	54456982	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:8,1:17,3
+chr13	54822460	.	C	A	0	PASS	DP=78;GPV=1;SPV=0.0030923;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:15,5:19,4
+chr13	54978196	.	T	TCTG	0	PASS	DP=76;GPV=1;SPV=0.0031698;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,9:15,4:17,5
+chr13	54978198	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.0047817;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,9:0,4:15,5
+chr13	55939310	.	CA	C	0	PASS	DP=30;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,8:3,7:4,1
+chr13	56047122	.	G	GAA	0	PASS	DP=47;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,4:10,2:4,2
+chr13	56059202	.	G	T	0	PASS	DP=51;GPV=1;SPV=1.7034e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:10,8:2,4
+chr13	56673893	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.068138;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:12,2:20,2
+chr13	56886793	.	G	C	0	PASS	DP=92;GPV=1;SPV=0.0057679;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:42,8:18,5:24,3
+chr13	59366827	.	A	AAAAAAAAAAAAAGAAAAAAG	0	PASS	DP=54;GPV=1;SPV=0.01134;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:3,3:11,5
+chr13	60567892	.	T	A	0	PASS	DP=53;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:6,2:3,1:3,1
+chr13	62709373	.	G	A	0	PASS	DP=89;GPV=1;SPV=2.6125e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:21,22:9,12:12,10
+chr13	63651229	.	CAAAA	C	0	PASS	DP=53;GPV=1;SPV=0.016883;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:12,7:6,3
+chr13	64029473	.	C	T	0	PASS	DP=83;GPV=1;SPV=2.0665e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:24,15:12,9:12,6
+chr13	65030733	.	CTTTT	C	0	PASS	DP=40;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,12:4,6:6,6
+chr13	65287935	.	TTA	T	0	PASS	DP=40;GPV=1;SPV=0.015215;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:7,3:6,5
+chr13	65550403	.	A	AT	0	PASS	DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:15,5:17,2
+chr13	65937905	.	CTCTCTCAGTGTG	C	0	PASS	DP=62;GPV=1;SPV=0.030107;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:11,2:9,5
+chr13	67280322	.	C	T	0	PASS	DP=81;GPV=1;SPV=5.3034e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:15,6:9,8
+chr13	67861113	.	A	T	0	PASS	DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,13:4,4:3,9
+chr13	68341888	.	C	G	0	PASS	DP=101;GPV=1;SPV=1.1616e-09;SS=2;SSC=89;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:26,24:14,11:12,13
+chr13	68520918	.	G	A	0	PASS	DP=75;GPV=1;SPV=0.043461;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:20,6:17,3
+chr13	69231759	.	C	CT	0	PASS	DP=36;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:8,5:3,1
+chr13	71477108	.	T	A	0	PASS	DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:6,5:8,1
+chr13	71864180	.	T	TACAC	0	PASS	DP=27;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:1,5:6,2
+chr13	72628285	.	C	T	0	PASS	DP=84;GPV=1;SPV=1.467e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:32,19:18,12:14,7
+chr13	72809132	.	C	CTTTT	0	PASS	DP=30;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,8:3,6:3,2
+chr13	75106360	.	AC	A	0	PASS	DP=90;GPV=1;SPV=2.1173e-06;SS=2;SSC=56;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:31,19:12,8:19,11
+chr13	75391036	.	A	C	0	PASS	DP=59;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:2,2:1,1:1,1
+chr13	75687265	.	G	A	0	PASS	DP=81;GPV=1;SPV=9.9664e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:23,5:10,11
+chr13	76031962	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:8,2:12,2
+chr13	76259937	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.00079043;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,10:2,8:12,2
+chr13	79438248	.	AT	A	0	PASS	DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,2:5,2
+chr13	79619710	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.0007273;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:14,2:12,7
+chr13	79669998	.	A	AACACACACAC	0	PASS	DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:5,3:5,1
+chr13	80106247	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,1:9,3
+chr13	80648002	.	T	C	0	PASS	DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:10,1:16,3
+chr13	80648035	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:7,4:3,2:4,2
+chr13	80803021	.	C	T	0	PASS	DP=76;GPV=1;SPV=0.22704;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:9,7:7,4:2,3
+chr13	82684632	.	T	A	0	PASS	DP=76;GPV=1;SPV=0.029693;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:8,6:18,3
+chr13	84745270	.	G	GA	0	PASS	DP=53;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,4:6,3:8,1
+chr13	85437319	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.027663;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:17,4:15,2
+chr13	85437344	.	G	T	0	PASS	DP=67;GPV=1;SPV=0.027663;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:18,2:14,4
+chr13	85560807	.	G	A	0	PASS	DP=72;GPV=1;SPV=1.721e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:17,17:12,13:5,4
+chr13	86078171	.	TACAC	T	0	PASS	DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,1:5,5
+chr13	86078187	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:8,1:8,4
+chr13	86538288	.	G	GTGTA	0	PASS	DP=35;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:20:1,3:1,1:0,2
+chr13	86655220	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:5,2:5,3
+chr13	88224501	.	C	G	0	PASS	DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,4:2,3:1,1
+chr13	88930417	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,2:3,1:0,1
+chr13	89441265	.	A	AATGGATGG	0	PASS	DP=53;GPV=1;SPV=0.0095925;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,5:7,4
+chr13	90249759	.	A	AGAAAG	0	PASS	DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:13,2:12,2
+chr13	90372376	.	CA	C	0	PASS	DP=51;GPV=1;SPV=0.11845;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:23,3:6,2
+chr13	91398650	.	GGGCGGCGGAGGCGGC	G	0	PASS	DP=102;GPV=1;SPV=0.0060488;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:20,2:19,4
+chr13	93491145	.	A	G	0	PASS	DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:10,1:18,3
+chr13	95025502	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.00054667;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:10:1,9:1,8:0,1
+chr13	96468477	.	T	C	0	PASS	DP=73;GPV=1;SPV=0.010062;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:6,9:3,8:3,1
+chr13	96499030	.	T	A	0	PASS	DP=71;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:7,2:5,1:2,1
+chr13	97001186	.	C	T	0	PASS	DP=75;GPV=1;SPV=0.04045;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:22,5:17,1
+chr13	97001187	.	C	T	0	PASS	DP=73;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,8:19,6:15,2
+chr13	97320261	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:8,6:6,2
+chr13	97696568	.	C	T	0	PASS	DP=103;GPV=1;SPV=2.8389e-08;SS=2;SSC=75;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,19:14,12:14,7
+chr13	98559002	.	TAAAAAAAAAAA	T	0	PASS	DP=38;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,10:4,7:5,3
+chr13	99637962	.	CT	C	0	PASS	DP=39;GPV=1;SPV=0.0059157;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,7:5,5:6,2
+chr13	100043996	.	A	ATT	0	PASS	DP=31;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:2,1:5,4
+chr13	100505843	.	T	G	0	PASS	DP=52;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:1,2:0,1:1,1
+chr13	101346089	.	A	C	0	PASS	DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:11,3:14,2
+chr13	101346091	.	A	C	0	PASS	DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:11,2:12,2
+chr13	102245264	.	G	T	0	PASS	DP=94;GPV=1;SPV=1.9604e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:15,6:18,8
+chr13	103445508	.	C	A	0	PASS	DP=85;GPV=1;SPV=0.0017218;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:26,5:9,4
+chr13	104097476	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.015935;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:19,5:18,2
+chr13	104302092	.	A	T	0	PASS	DP=100;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:30,4:18,1:12,3
+chr13	104325344	.	G	T	0	PASS	DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:13,2:22,2
+chr13	104512774	.	T	A	0	PASS	DP=103;GPV=1;SPV=0.00037812;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:46,13:24,7:22,6
+chr13	107279043	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:6,2:5,4
+chr13	108699076	.	GTC	G	0	PASS	DP=75;GPV=1;SPV=0.0016383;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,18:12,8:13,10
+chr13	108873751	.	T	G	0	PASS	DP=40;GPV=1;SPV=0.0023885;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,11:4,3:7,8
+chr13	109228451	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00028692;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:38,15:21,5:17,10
+chr13	109346813	.	A	ATGTGTGTG	0	PASS	DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:10,3:11,1
+chr13	112195638	.	C	CCCTT	0	PASS	DP=47;GPV=1;SPV=0.04242;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:4,1:13,5
+chr13	112297897	.	G	C	0	PASS	DP=46;GPV=1;SPV=0.036642;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:7,1:9,5
+chr13	114195916	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.0015389;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:9,12:5,2
+chr14	18275569	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.040392;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,7:16,3:12,4
+chr14	18277913	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.031674;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:0,1:3,4
+chr14	18293396	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.027835;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,13:24,8:4,5
+chr14	18348735	.	T	A	0	PASS	DP=46;GPV=1;SPV=0.03876;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:11,2:9,3
+chr14	18600029	.	A	G	0	PASS	DP=101;GPV=1;SPV=0.03782;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:44,9:34,7:10,2
+chr14	18623916	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.048554;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,13:31,12:6,1
+chr14	18675772	.	G	A	0	PASS	DP=106;GPV=1;SPV=0.0018642;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:26,15:13,11:13,4
+chr14	18701161	.	C	CA	0	PASS	DP=109;GPV=1;SPV=0.0075688;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:39,17:27,15:12,2
+chr14	18883954	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:8,1:15,3
+chr14	18903501	.	C	A	0	PASS	DP=71;GPV=1;SPV=0.023213;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:1,4:32,6
+chr14	18930867	.	G	T	0	PASS	DP=268;GPV=1;SPV=0.0090992;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:116,24:72,14:44,10
+chr14	18967593	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:6,2:0,1
+chr14	19008500	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:8,1:26,3
+chr14	19009534	.	G	T	0	PASS	DP=138;GPV=1;SPV=0.04659;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:61,15:21,8:40,7
+chr14	19023336	.	TTCTTTTTCCTTCC	T	0	PASS	DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:14,3:18,1
+chr14	19075816	.	A	G	0	PASS	DP=65;GPV=1;SPV=0.0071887;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:15,4:9,2
+chr14	19080792	.	C	T	0	PASS	DP=138;GPV=1;SPV=0.021872;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:65,11:45,7:20,4
+chr14	19130715	.	T	C	0	PASS	DP=171;GPV=1;SPV=0.028804;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:66,17:39,9:27,8
+chr14	19132173	.	T	C	0	PASS	DP=147;GPV=1;SPV=0.036884;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:63,10:30,7:33,3
+chr14	19157089	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.039124;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:49,8:35,7:14,1
+chr14	19158466	.	C	G	0	PASS	DP=115;GPV=1;SPV=0.0074315;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:51,10:27,9:24,1
+chr14	19167784	.	T	G	0	PASS	DP=302;GPV=1;SPV=0.0051068;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:162:132,30:63,10:69,20
+chr14	19182046	.	C	T	0	PASS	DP=289;GPV=1;SPV=0.025097;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:153:131,22:59,18:72,4
+chr14	19203458	.	C	A	0	PASS	DP=196;GPV=1;SPV=0.025927;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:84,18:45,7:39,11
+chr14	19209070	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:6,3:14,1
+chr14	19267820	.	C	T	0	PASS	DP=379;GPV=1;SPV=0.02757;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:206:183,23:91,15:92,8
+chr14	19296488	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:21,4:0,0
+chr14	19296490	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:18,4:0,0
+chr14	19303656	.	C	G	0	PASS	DP=88;GPV=1;SPV=0.0023146;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:16,8:16,5
+chr14	19331110	.	T	C	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:5,3:0,0
+chr14	19340923	.	C	A	0	PASS	DP=116;GPV=1;SPV=0.04753;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:59,8:52,5:7,3
+chr14	19367032	.	T	A	0	PASS	DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:6,4:0,0
+chr14	19436243	.	C	G	0	PASS	DP=296;GPV=1;SPV=0.0055829;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:152:129,23:80,6:49,17
+chr14	19487998	.	C	T	0	PASS	DP=325;GPV=1;SPV=0.012617;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:172:153,19:91,10:62,9
+chr14	19498454	.	G	T	0	PASS	DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:5,2:0,2
+chr14	19507184	.	G	C	0	PASS	DP=60;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,6:8,2:13,4
+chr14	19716664	.	CTTTTT	C	0	PASS	DP=39;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,4:10,3:7,1
+chr14	19724259	.	G	T	0	PASS	DP=143;GPV=1;SPV=0.013119;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:66,9:34,8:32,1
+chr14	19724585	.	C	G	0	PASS	DP=133;GPV=1;SPV=0.0079005;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:51,19:25,11:26,8
+chr14	20275448	.	A	G	0	PASS	DP=87;GPV=1;SPV=0.0048847;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:27,4:14,5
+chr14	20638971	.	A	G	0	PASS	DP=63;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:6,5:4,1:2,4
+chr14	21255222	.	G	C	0	PASS	DP=84;GPV=1;SPV=1.2576e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:13,7:14,12
+chr14	21302865	.	G	GT	0	PASS	DP=34;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:12,4:2,2
+chr14	23858347	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:24,3:12,1
+chr14	25206151	.	C	T	0	PASS	DP=95;GPV=1;SPV=0.038164;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:25,5:16,4
+chr14	25866235	.	CTATA	C	0	PASS	DP=24;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:3,9:1,5:2,4
+chr14	26452982	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.052515;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:11,2:15,2
+chr14	26624273	.	C	A	0	PASS	DP=77;GPV=1;SPV=0.0034956;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:24,6:10,3
+chr14	26975883	.	T	C	0	PASS	DP=84;GPV=1;SPV=7.5582e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:12,9:20,5
+chr14	27030195	.	GT	G	0	PASS	DP=31;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,8:7,6:2,2
+chr14	27069381	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.0013223;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:15,5:7,3
+chr14	27420828	.	C	T	0	PASS	DP=85;GPV=1;SPV=8.4049e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:10,6:20,6
+chr14	28242328	.	G	A	0	PASS	DP=89;GPV=1;SPV=3.8111e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:31,18:18,8:13,10
+chr14	28370799	.	C	A	0	PASS	DP=86;GPV=1;SPV=1.8466e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:9,8:16,7
+chr14	29722786	.	T	G	0	PASS	DP=77;GPV=1;SPV=5.3456e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:10,9:10,7
+chr14	30003083	.	CT	C	0	PASS	DP=83;GPV=1;SPV=0.0086439;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:16,4:17,2
+chr14	30084265	.	C	A	0	PASS	DP=86;GPV=1;SPV=1.2077e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:25,21:13,11:12,10
+chr14	31650291	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.044578;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:27,8:21,6:6,2
+chr14	31831518	.	T	C	0	PASS	DP=74;GPV=1;SPV=0.040005;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:21,5:11,5
+chr14	31831522	.	CT	C	0	PASS	DP=75;GPV=1;SPV=0.011327;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:22,3:12,4
+chr14	32068460	.	C	CATACATACATAGATAG	0	PASS	DP=52;GPV=1;SPV=0.0051214;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,11:11,5:7,6
+chr14	32532619	.	G	A	0	PASS	DP=95;GPV=1;SPV=1.5483e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:28,19:14,11:14,8
+chr14	32800165	.	C	T	0	PASS	DP=64;GPV=1;SPV=0.042367;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:19,5:10,3
+chr14	32967914	.	T	A	0	PASS	DP=93;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:3,3:1,2:2,1
+chr14	33165234	.	C	T	0	PASS	DP=103;GPV=1;SPV=3.0434e-08;SS=2;SSC=75;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:31,22:18,8:13,14
+chr14	34341564	.	G	GTTTTTTTTTTTT	0	PASS	DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:18,2:9,2
+chr14	34442955	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.0088608;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:4,6:10,2
+chr14	34477676	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.00016626;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:9,8:14,7
+chr14	35314744	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,4:10,1:9,3
+chr14	36913491	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.0014226;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:19,4:24,10
+chr14	37144786	.	T	G	0	PASS	DP=73;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:34:0,2:0,1:0,1
+chr14	37200900	.	ATT	A	0	PASS	DP=29;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,5:3,2:4,3
+chr14	38020623	.	G	GGAAA	0	PASS	DP=46;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:2,2:1,1:1,1
+chr14	40079351	.	C	G	0	PASS	DP=74;GPV=1;SPV=2.4501e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:18,23:11,13:7,10
+chr14	40327825	.	T	C	0	PASS	DP=60;GPV=1;SPV=0.027884;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:18,2:4,7
+chr14	44939478	.	T	C	0	PASS	DP=81;GPV=1;SPV=8.2732e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,14:13,8:12,6
+chr14	47328511	.	G	A	0	PASS	DP=83;GPV=1;SPV=1.3827e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:19,19:7,10:12,9
+chr14	48092117	.	CT	C	0	PASS	DP=63;GPV=1;SPV=0.0016295;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:19,7:5,2
+chr14	48117599	.	T	G	0	PASS	DP=81;GPV=1;SPV=5.9462e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:20,19:11,8:9,11
+chr14	48297784	.	T	C	0	PASS	DP=88;GPV=1;SPV=2.3127e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:18,7:15,9
+chr14	48623342	.	CAAT	C	0	PASS	DP=60;GPV=1;SPV=0.01186;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:11,3:13,3
+chr14	48838104	.	A	AGTATAT	0	PASS	DP=96;GPV=1;SPV=0.0016268;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:48,13:22,11:26,2
+chr14	48864561	.	C	T	0	PASS	DP=79;GPV=1;SPV=1.1187e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,14:11,6:9,8
+chr14	50298241	.	C	CA	0	PASS	DP=70;GPV=1;SPV=0.0028764;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,9:14,6:15,3
+chr14	50592913	.	C	CAA	0	PASS	DP=48;GPV=1;SPV=0.0090305;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,8:6,3:4,5
+chr14	50706587	.	C	A	0	PASS	DP=46;GPV=1;SPV=0.030455;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,7:6,1:5,6
+chr14	50804024	.	T	C	0	PASS	DP=89;GPV=1;SPV=0.00013722;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:17,5:18,8
+chr14	52114937	.	T	TTTCCTTCCTTCC	0	PASS	DP=55;GPV=1;SPV=0.0090318;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,7:6,2:11,5
+chr14	53220706	.	C	CT	0	PASS	DP=72;GPV=1;SPV=0.015262;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:22,1:12,6
+chr14	56952731	.	A	AATTT	0	PASS	DP=53;GPV=1;SPV=0.0033813;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:15,8:9,5:6,3
+chr14	59706254	.	G	A	0	PASS	DP=93;GPV=1;SPV=1.1021e-09;SS=2;SSC=89;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:22,23:14,16:8,7
+chr14	60150195	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.041463;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:14,3:14,3
+chr14	62069460	.	T	A	0	PASS	DP=88;GPV=1;SPV=0.0022758;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:19,4:21,6
+chr14	65242028	.	C	CA	0	PASS	DP=54;GPV=1;SPV=0.016958;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,13:13,10:6,3
+chr14	67239659	.	C	T	0	PASS	DP=86;GPV=1;SPV=3.4636e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:18,9:15,7
+chr14	67610681	.	T	G	0	PASS	DP=93;GPV=1;SPV=1.1251e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:13,6:18,8
+chr14	70612062	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.046393;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:14,2:14,4
+chr14	71462760	.	G	A	0	PASS	DP=94;GPV=1;SPV=2.4736e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,15:10,9:19,6
+chr14	71741826	.	C	T	0	PASS	DP=78;GPV=1;SPV=2.6327e-08;SS=2;SSC=75;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,19:6,10:12,9
+chr14	72825700	.	A	T	0	PASS	DP=46;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:3,2:0,0:3,2
+chr14	73404927	.	A	G	0	PASS	DP=90;GPV=1;SPV=2.6657e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:23,25:9,15:14,10
+chr14	73537688	.	C	T	0	PASS	DP=78;GPV=1;SPV=0.07266;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:15,3:27,2
+chr14	78500814	.	AC	A	0	PASS	DP=93;GPV=1;SPV=8.6e-07;SS=2;SSC=60;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:32,21:14,12:18,9
+chr14	78500816	.	T	A	0	PASS	DP=89;GPV=1;SPV=1.1886e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:30,20:13,12:17,8
+chr14	79958641	.	C	G	0	PASS	DP=87;GPV=1;SPV=1.1457e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,19:18,12:6,7
+chr14	81593003	.	TTCTC	T	0	PASS	DP=72;GPV=1;SPV=0.01488;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:12,3:19,3
+chr14	82675517	.	C	CCT	0	PASS	DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:15,3:12,1
+chr14	82675520	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.14145;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,4:16,3:18,1
+chr14	82745894	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.026013;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:21,5:16,2
+chr14	83518393	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.013612;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:11,11:8,2
+chr14	83643358	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.079949;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:19,1:16,3
+chr14	83643359	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:19,1:16,3
+chr14	84975142	.	A	ATTTT	0	PASS	DP=51;GPV=1;SPV=0.037117;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,10:9,7:12,3
+chr14	85700546	.	T	TGTATATATATATATACAC	0	PASS	DP=50;GPV=1;SPV=0.041607;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:13,5:9,4
+chr14	85757078	.	G	A	0	PASS	DP=83;GPV=1;SPV=0.00011418;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:13,4:17,8
+chr14	86443404	.	T	A	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:4,3:6,1
+chr14	86443424	.	T	TATTA	0	PASS	DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:5,2:7,2
+chr14	86443426	.	A	AT	0	PASS	DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:4,2:7,2
+chr14	86443457	.	ATAT	A	0	PASS	DP=22;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:4,3:3,2
+chr14	87053919	.	C	CAT	0	PASS	DP=83;GPV=1;SPV=0.031137;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,11:17,4:19,7
+chr14	87298808	.	A	T	0	PASS	DP=70;GPV=1;SPV=0.0042046;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:15,4:16,5
+chr14	87592377	.	TACATATATATAC	T	0	PASS	DP=22;GPV=1;SPV=0.025112;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,4:0,2:3,2
+chr14	87625150	.	G	GGTGTGTGTGTGTGTGTGT	0	PASS	DP=62;GPV=1;SPV=0.0047438;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,13:6,7:12,6
+chr14	87690858	.	C	CAAA	0	PASS	DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,8:10,7:4,1
+chr14	87754364	.	TAA	T	0	PASS	DP=27;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:7,4:3,1
+chr14	87997375	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:15,3:2,1
+chr14	88279364	.	CGT	C	0	PASS	DP=71;GPV=1;SPV=0.016381;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:27,4:7,6
+chr14	89246542	.	C	CTTTTTTT	0	PASS	DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,3:2,1
+chr14	89446196	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,5:0,2:3,3
+chr14	90126442	.	T	C	0	PASS	DP=87;GPV=1;SPV=0.03614;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:19,4:24,5
+chr14	90142313	.	CTT	C	0	PASS	DP=33;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,5:6,4:4,1
+chr14	90235234	.	G	T	0	PASS	DP=100;GPV=1;SPV=9.4293e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:33,24:19,13:14,11
+chr14	90793611	.	TTC	T	0	PASS	DP=83;GPV=1;SPV=0.047211;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:20,4:21,1
+chr14	91235478	.	TA	T	0	PASS	DP=61;GPV=1;SPV=0.017694;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:12,6:7,5:5,1
+chr14	91967135	.	CTTTT	C	0	PASS	DP=45;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:14,8:6,3
+chr14	92661723	.	T	TCACACACACACACA	0	PASS	DP=64;GPV=1;SPV=0.011835;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:9,8:12,4
+chr14	93758594	.	CA	C	0	PASS	DP=50;GPV=1;SPV=0.0021328;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:17,16:10,13:7,3
+chr14	94577597	.	A	AATGGATGGATGGATGG	0	PASS	DP=40;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,8:7,6:8,2
+chr14	94577713	.	A	G	0	PASS	DP=49;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,6:7,3:9,3
+chr14	95565365	.	CAAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=27;GPV=1;SPV=0.0012204;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,9:3,6:1,3
+chr14	95731012	.	CA	C	0	PASS	DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:17,4:3,1
+chr14	96288807	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.067038;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,5:17,1:1,4
+chr14	96340090	.	ATATGC	A	0	PASS	DP=42;GPV=1;SPV=0.0063215;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:5,5:10,2
+chr14	96340102	.	G	T	0	PASS	DP=38;GPV=1;SPV=0.0041611;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:5,6:8,2
+chr14	96340103	.	A	C	0	PASS	DP=38;GPV=1;SPV=0.016908;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:9,6:3,4:6,2
+chr14	96402185	.	G	GCA	0	PASS	DP=60;GPV=1;SPV=0.040001;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,11:15,9:9,2
+chr14	96923926	.	C	G	0	PASS	DP=50;GPV=1;SPV=0.14923;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:24,3:15,2:9,1
+chr14	97788393	.	AT	A	0	PASS	DP=45;GPV=1;SPV=0.024094;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:10,7:8,3
+chr14	99040695	.	G	A	0	PASS	DP=81;GPV=1;SPV=4.9392e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:18,5:7,10
+chr14	99090775	.	G	C	0	PASS	DP=72;GPV=1;SPV=2.5041e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:11,8:14,8
+chr14	101724124	.	C	CTATA	0	PASS	DP=31;GPV=1;SPV=0.0075746;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:2,3:6,2
+chr14	101724481	.	A	ATG	0	PASS	DP=63;GPV=1;SPV=0.019978;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,6:9,3:11,3
+chr14	102534417	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.033617;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:12,6:5,1
+chr14	102919147	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,5:2,3:3,2
+chr14	103455725	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.0039567;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,12:7,9:4,3
+chr14	104618695	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.016099;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:15,3:27,3
+chr14	104941075	.	A	G	0	PASS	DP=89;GPV=1;SPV=5.6174e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:30,16:15,10:15,6
+chr14	105117430	.	C	T	0	PASS	DP=92;GPV=1;SPV=2.9216e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:27,18:14,10:13,8
+chr14	105578997	.	C	G	0	PASS	DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:8,4:3,3
+chr14	106336406	.	C	T	0	PASS	DP=111;GPV=1;SPV=0.0066012;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:44,17:23,5:21,12
+chr14	106364035	.	A	C	0	PASS	DP=164;GPV=1;SPV=0.023607;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:76,15:46,9:30,6
+chr14	106616599	.	AT	A	0	PASS	DP=59;GPV=1;SPV=0.015078;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,10:17,3:7,7
+chr14	106718552	.	T	C	0	PASS	DP=54;GPV=1;SPV=0.0042611;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:7,4:8,6
+chr14	106742478	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:7,3:10,1
+chr15	17043584	.	A	T	0	PASS	DP=78;GPV=1;SPV=0.036099;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,6:11,5:18,1
+chr15	17071844	.	T	TAATAA	0	PASS	DP=156;GPV=1;SPV=0.0075974;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:62,21:32,13:30,8
+chr15	17745355	.	C	A	0	PASS	DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:1,4:4,1
+chr15	19940628	.	A	G	0	PASS	DP=172;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:73,16:21,2:52,14
+chr15	19947231	.	C	T	0	PASS	DP=98;GPV=1;SPV=0.04413;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:17,4:24,2
+chr15	19970462	.	G	A	0	PASS	DP=88;GPV=1;SPV=5.014e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:23,19:11,10:12,9
+chr15	20046046	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr15	20297628	.	A	ATGTGTG	0	PASS	DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:17,3:8,2
+chr15	20338480	.	C	T	0	PASS	DP=136;GPV=1;SPV=0.034269;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:62,7:32,1:30,6
+chr15	20446348	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,2:2,2
+chr15	20447359	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.015935;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:19,6:18,1
+chr15	20514557	.	G	T	0	PASS	DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:11,3:7,1
+chr15	20550996	.	AT	A	0	PASS	DP=57;GPV=1;SPV=0.093185;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,4:12,3:9,1
+chr15	20761447	.	G	C	0	PASS	DP=60;GPV=1;SPV=0.039629;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:10,6:10,3
+chr15	20792295	.	A	T	0	PASS	DP=47;GPV=1;SPV=0.030143;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:6,1:9,7
+chr15	21109547	.	T	A	0	PASS	DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:9,4:1,0
+chr15	21109799	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.019651;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:13,2:16,4
+chr15	21130291	.	C	T	0	PASS	DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:17,1:7,3
+chr15	21390562	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:6,3:12,1
+chr15	21600826	.	TTC	T	0	PASS	DP=53;GPV=1;SPV=0.13742;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,4:10,1:14,3
+chr15	21611434	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:9,5:2,3
+chr15	22597817	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.05944;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:17,2:13,3
+chr15	22671885	.	G	C	0	PASS	DP=45;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:10,5:5,3
+chr15	23175822	.	C	G	0	PASS	DP=125;GPV=1;SPV=0.0021754;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:52,8:29,7:23,1
+chr15	23187645	.	CT	C	0	PASS	DP=250;GPV=1;SPV=0.00038121;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:128:109,19:49,13:60,6
+chr15	23223334	.	A	C	0	PASS	DP=134;GPV=1;SPV=0.01981;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:59,10:33,2:26,8
+chr15	23226593	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.081933;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:0,0:24,4
+chr15	23788490	.	A	G	0	PASS	DP=81;GPV=1;SPV=8.5877e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,17:13,10:15,7
+chr15	24104211	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.00033318;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:11,7:9,3
+chr15	24381735	.	T	A	0	PASS	DP=94;GPV=1;SPV=0.00011781;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:37,13:17,7:20,6
+chr15	24918765	.	T	C	0	PASS	DP=37;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,4:6,1:7,3
+chr15	25977620	.	TTGTG	T	0	PASS	DP=40;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,7:7,4:3,3
+chr15	26037581	.	C	T	0	PASS	DP=76;GPV=1;SPV=2.2745e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:8,5:11,8
+chr15	27997863	.	A	G	0	PASS	DP=53;GPV=1;SPV=0.0025754;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:12,6:3,6
+chr15	28313192	.	A	ATT	0	PASS	DP=60;GPV=1;SPV=0.00039787;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,12:15,9:6,3
+chr15	28340529	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.016632;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:15,5:0,1
+chr15	28488252	.	C	G	0	PASS	DP=99;GPV=1;SPV=0.034622;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:47,8:29,7:18,1
+chr15	30211882	.	G	A	0	PASS	DP=93;GPV=1;SPV=0.022897;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:24,3:13,6
+chr15	30524903	.	G	A	0	PASS	DP=125;GPV=1;SPV=0.034072;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:51,14:31,6:20,8
+chr15	30747226	.	C	T	0	PASS	DP=88;GPV=1;SPV=7.1199e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:17,8:8,8
+chr15	31019495	.	G	A	0	PASS	DP=105;GPV=1;SPV=5.3546e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:19,6:16,5
+chr15	31704792	.	T	G	0	PASS	DP=91;GPV=1;SPV=0.015927;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:22,9:12,5
+chr15	32737928	.	C	CAAAAAA	0	PASS	DP=34;GPV=1;SPV=0.46076;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,5:8,4:7,1
+chr15	32777904	.	C	CATTT	0	PASS	DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:2,2:15,2
+chr15	32994212	.	C	CCTCTCTCT	0	PASS	DP=57;GPV=1;SPV=0.043916;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,11:9,7:13,4
+chr15	33933524	.	CAGAGAGAGAG	C	0	PASS	DP=65;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:7,7:6,4:1,3
+chr15	34424470	.	C	A	0	PASS	DP=61;GPV=1;SPV=0.023399;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:13,4:10,6
+chr15	34685910	.	TTG	T	0	PASS	DP=77;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:7,5:4,2:3,3
+chr15	35083633	.	G	GGCTTCTATCAATGTTGTCCTTA	0	PASS	DP=80;GPV=1;SPV=0.079262;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:46,6:18,3:28,3
+chr15	35732877	.	C	CAA	0	PASS	DP=68;GPV=1;SPV=0.00083319;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:21,16:14,10:7,6
+chr15	36743179	.	G	A	0	PASS	DP=99;GPV=1;SPV=1.843e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:29,23:14,13:15,10
+chr15	37695262	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.012757;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,11:4,4:6,7
+chr15	38266651	.	C	A	0	PASS	DP=66;GPV=1;SPV=0.042491;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,7:9,1:10,6
+chr15	38269024	.	C	T	0	PASS	DP=98;GPV=1;SPV=9.2124e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:26,17:16,9:10,8
+chr15	40839018	.	T	C	0	PASS	DP=82;GPV=1;SPV=0.02675;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:27,3:13,3
+chr15	43537708	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:7,2:2,1:5,1
+chr15	43628891	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.039873;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:12,3:13,1
+chr15	44540265	.	ATATT	A	0	PASS	DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:6,2:9,4
+chr15	44772919	.	G	GTT	0	PASS	DP=43;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:5,10:4,8:1,2
+chr15	45070502	.	C	T	0	PASS	DP=117;GPV=1;SPV=0.012262;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:61,8:32,5:29,3
+chr15	45082496	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.0087902;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:13,1:16,9
+chr15	46625108	.	C	T	0	PASS	DP=105;GPV=1;SPV=5.2105e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:39,24:23,15:16,9
+chr15	47025527	.	CAA	C	0	PASS	DP=57;GPV=1;SPV=0.0037333;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:17,11:14,8:3,3
+chr15	47903612	.	A	T	0	PASS	DP=118;GPV=1;SPV=1.2618e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:41,29:19,18:22,11
+chr15	47989175	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:13,1:14,3
+chr15	50085959	.	ATATT	A	0	PASS	DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:2,4:9,3
+chr15	51353734	.	A	C	0	PASS	DP=24;GPV=1;SPV=0.00033652;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,8:1,6:2,2
+chr15	52964525	.	GTTT	G	0	PASS	DP=39;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:7,6:5,5:2,1
+chr15	53187110	.	C	A	0	PASS	DP=72;GPV=1;SPV=2.6047e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:23,21:13,9:10,12
+chr15	53650893	.	G	GTTT	0	PASS	DP=43;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,8:9,7:5,1
+chr15	55089869	.	G	A	0	PASS	DP=94;GPV=1;SPV=4.6867e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:27,21:13,9:14,12
+chr15	55363799	.	C	CTTT	0	PASS	DP=26;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:5,3:2,1
+chr15	55627492	.	GT	G	0	PASS	DP=42;GPV=1;SPV=0.0094148;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:8,9:3,1
+chr15	56103129	.	A	AT	0	PASS	DP=41;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,6:8,5:1,1
+chr15	58269300	.	G	A	0	PASS	DP=72;GPV=1;SPV=4.2691e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:13,3:8,8
+chr15	58274244	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:6,8:4,1
+chr15	58787140	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:4,4:8,3
+chr15	59072450	.	CTT	C	0	PASS	DP=31;GPV=1;SPV=0.017591;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,7:6,6:2,1
+chr15	60011899	.	T	C	0	PASS	DP=78;GPV=1;SPV=8.3139e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,18:13,10:6,8
+chr15	61293962	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,4:12,3:10,1
+chr15	61650775	.	CTT	C	0	PASS	DP=31;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,7:9,3:2,4
+chr15	61856687	.	CTT	C	0	PASS	DP=45;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:7,5:5,2
+chr15	62710720	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:1,3:7,2
+chr15	64343208	.	A	AACACACACACACACACACACACACACAC	0	PASS	DP=26;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,4:3,2:5,2
+chr15	64510205	.	C	CT	0	PASS	DP=43;GPV=1;SPV=0.046544;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,9:9,6:8,3
+chr15	65706489	.	CACACACAT	C	0	PASS	DP=75;GPV=1;SPV=0.032215;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,9:18,5:10,4
+chr15	65831632	.	C	T	0	PASS	DP=70;GPV=1;SPV=4.8683e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:12,9:11,4
+chr15	66993354	.	GGAAGGAAGGAAGGAAA	G	0	PASS	DP=69;GPV=1;SPV=0.019687;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:19,9:6,3
+chr15	68050470	.	T	TATATAC	0	PASS	DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:8,1:14,3
+chr15	68050503	.	G	T	0	PASS	DP=36;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,5:8,2:11,3
+chr15	68263213	.	A	ATTTTTTTTTT	0	PASS	DP=21;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,2:4,2
+chr15	69078432	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,6:3,5:3,1
+chr15	69993326	.	CAGAG	C	0	PASS	DP=46;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,4:11,3:1,1
+chr15	70398548	.	G	GGTGT	0	PASS	DP=67;GPV=1;SPV=0.0012942;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,14:14,10:11,4
+chr15	71243781	.	C	CT	0	PASS	DP=38;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:7,6:2,2
+chr15	72003703	.	C	CA	0	PASS	DP=59;GPV=1;SPV=0.022587;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,7:7,6:6,1
+chr15	72397082	.	T	C	0	PASS	DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:25,3:6,1
+chr15	74743217	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.024827;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:17,3:4,7
+chr15	74914348	.	T	C	0	PASS	DP=74;GPV=1;SPV=0.040005;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:19,3:13,7
+chr15	75287685	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:6,3:2,1
+chr15	75822868	.	A	ACACACACACACGCACG	0	PASS	DP=43;GPV=1;SPV=0.030957;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:10,2:7,3
+chr15	76466419	.	CT	C	0	PASS	DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,4:0,3:5,1
+chr15	82321103	.	G	A	0	PASS	DP=138;GPV=1;SPV=4.3683e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:59,20:24,6:35,14
+chr15	82345109	.	A	G	0	PASS	DP=95;GPV=1;SPV=0.029553;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:11,4:32,1
+chr15	82367236	.	C	CAT	0	PASS	DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:18,2:17,3
+chr15	82382507	.	C	CGT	0	PASS	DP=56;GPV=1;SPV=0.02121;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,9:8,4:6,5
+chr15	84409726	.	G	A	0	PASS	DP=105;GPV=1;SPV=0.044392;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:55,9:28,4:27,5
+chr15	85458138	.	C	CA	0	PASS	DP=56;GPV=1;SPV=0.017221;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:13,4:8,1
+chr15	85841139	.	A	ATTTTT	0	PASS	DP=36;GPV=1;SPV=0.0003221;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:2,11:0,5:2,6
+chr15	86475330	.	A	T	0	PASS	DP=76;GPV=1;SPV=0.00014151;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:7,3:15,6
+chr15	86597882	.	G	T	0	PASS	DP=74;GPV=1;SPV=2.0618e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:22,18:16,11:6,7
+chr15	86838941	.	T	TAAAA	0	PASS	DP=32;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,5:5,3:6,2
+chr15	86940060	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,3:3,2
+chr15	87000260	.	G	T	0	PASS	DP=40;GPV=1;SPV=0.026042;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:7,3:6,1
+chr15	87724250	.	C	CA	0	PASS	DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:14,5:13,5
+chr15	92047592	.	TA	T	0	PASS	DP=17;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,2:1,1:0,1
+chr15	92511469	.	A	G	0	PASS	DP=82;GPV=1;SPV=5.4759e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,17:9,12:14,5
+chr15	93460381	.	G	GT	0	PASS	DP=42;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,7:9,5:5,2
+chr15	93790249	.	G	A	0	PASS	DP=82;GPV=1;SPV=5.1342e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:16,5:15,10
+chr15	96682798	.	T	G	0	PASS	DP=80;GPV=1;SPV=8.9663e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:25,20:12,12:13,8
+chr15	97626677	.	T	C	0	PASS	DP=48;GPV=1;SPV=0.0012673;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:9,1:3,8
+chr15	97911574	.	T	A	0	PASS	DP=65;GPV=1;SPV=0.031275;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,9:13,4:12,5
+chr15	98437651	.	A	AATGGATGGATGG	0	PASS	DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:7,1:5,7
+chr15	99153623	.	A	C	0	PASS	DP=92;GPV=1;SPV=7.7259e-10;SS=2;SSC=91;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,19:7,12:11,7
+chr15	99602653	.	G	GGTGTGTGT	0	PASS	DP=29;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,5:0,4:4,1
+chr15	100292452	.	G	A	0	PASS	DP=60;GPV=1;SPV=1.1564e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,14:8,11:5,3
+chr15	100658178	.	T	TTGTGTGTG	0	PASS	DP=57;GPV=1;SPV=0.0047133;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,11:4,3:10,8
+chr15	100909498	.	C	CTTCG	0	PASS	DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:10,4:2,1
+chr15	101920402	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:9,2:11,2
+chr15	101961023	.	C	G	0	PASS	DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:12,4:0,0
+chr16	494909	.	G	T	0	PASS	DP=172;GPV=1;SPV=0.00042394;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:99:72,27:36,20:36,7
+chr16	900681	.	ATG	A	0	PASS	DP=36;GPV=1;SPV=0.012681;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:5,9:6,1
+chr16	3378992	.	C	CTTT	0	PASS	DP=31;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:6,2:3,4
+chr16	4232516	.	AT	A	0	PASS	DP=66;GPV=1;SPV=0.010719;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:16,4:13,3
+chr16	4998004	.	T	C	0	PASS	DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:13,2:12,2
+chr16	5180418	.	CA	C	0	PASS	DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:17,1:17,4
+chr16	5202775	.	T	G	0	PASS	DP=29;GPV=1;SPV=0.024176;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:5,1:3,3
+chr16	6077684	.	T	TTTTATTTATTTATTTA	0	PASS	DP=66;GPV=1;SPV=0.04992;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,7:13,4:14,3
+chr16	6315386	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.0059873;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:9,6:9,2
+chr16	6637411	.	T	A	0	PASS	DP=18;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:7,2:7,2:0,0
+chr16	6985832	.	T	TAAAAAAAAAA	0	PASS	DP=48;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,8:10,7:10,1
+chr16	7165410	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:14,3:8,1
+chr16	7567242	.	C	CCTAT	0	PASS	DP=54;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,5:9,2:9,3
+chr16	8056147	.	C	T	0	PASS	DP=96;GPV=1;SPV=1.308e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:29,20:13,7:16,13
+chr16	8111775	.	TATATATAC	T	0	PASS	DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:8,3:7,2
+chr16	9028587	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.00080108;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:3,9:8,5
+chr16	9264919	.	T	TATATA	0	PASS	DP=23;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,5:2,2:4,3
+chr16	9744591	.	AT	A	0	PASS	DP=68;GPV=1;SPV=6.589e-05;SS=2;SSC=41;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:10,5:10,6
+chr16	9894592	.	ATGGAC	A	0	PASS	DP=69;GPV=1;SPV=0.060567;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:13,1:18,3
+chr16	10372566	.	A	ATCTT	0	PASS	DP=28;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,4:0,0:7,4
+chr16	10730016	.	T	TAC	0	PASS	DP=34;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,6:5,4:3,2
+chr16	11251294	.	G	A	0	PASS	DP=91;GPV=1;SPV=5.9061e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:33,18:18,10:15,8
+chr16	11515850	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,4:0,3:9,1
+chr16	11637880	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.021584;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,3:3,1
+chr16	12063366	.	CTTT	C	0	PASS	DP=25;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:5,7:2,1
+chr16	13052959	.	C	CTTTTT	0	PASS	DP=31;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:5,2:6,2
+chr16	13469407	.	AAG	A	0	PASS	DP=69;GPV=1;SPV=0.046654;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,5:20,2:4,3
+chr16	14766859	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.012947;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:12,2:6,3
+chr16	15114927	.	AT	A	0	PASS	DP=49;GPV=1;SPV=0.029887;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,12:10,7:9,5
+chr16	15292837	.	A	ATATTAT	0	PASS	DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:16,1:14,4
+chr16	15379440	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.0036034;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:30,18:13,8:17,10
+chr16	16156942	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:6,10:4,9:2,1
+chr16	16427345	.	C	G	0	PASS	DP=114;GPV=1;SPV=0.022435;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:51,17:26,8:25,9
+chr16	16439040	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:8,3:11,2
+chr16	16629946	.	CTTTTTTTTTTTTTTT	C	0	PASS	DP=42;GPV=1;SPV=0.20218;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:15,3:9,1
+chr16	16808114	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,5:17,3:3,2
+chr16	16836537	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.0058774;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:3,6:9,5
+chr16	17536361	.	C	T	0	PASS	DP=86;GPV=1;SPV=1.5551e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:31,16:15,10:16,6
+chr16	18075713	.	A	T	0	PASS	DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:11,3:19,1
+chr16	18201427	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.050895;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:12,1:19,3
+chr16	18528014	.	T	G	0	PASS	DP=70;GPV=1;SPV=0.022438;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:12,5:15,2
+chr16	18963503	.	G	GTA	0	PASS	DP=59;GPV=1;SPV=0.16992;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:28,2:9,3
+chr16	19141438	.	A	ATATATATATATATTTTTT	0	PASS	DP=52;GPV=1;SPV=0.024869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:7,3:6,2
+chr16	19438407	.	AAG	A	0	PASS	DP=37;GPV=1;SPV=0.010948;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:3,7:9,4
+chr16	19623817	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,4:3,3:4,1
+chr16	22534576	.	G	T	0	PASS	DP=35;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:10,3:8,2
+chr16	22562538	.	G	A	0	PASS	DP=124;GPV=1;SPV=0.0039917;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:46,18:18,6:28,12
+chr16	22584112	.	AAGAG	A	0	PASS	DP=49;GPV=1;SPV=0.024122;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,6:15,3:6,3
+chr16	22868405	.	CA	C	0	PASS	DP=44;GPV=1;SPV=0.031408;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,3:6,1
+chr16	23257175	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:8,4:6,2:2,2
+chr16	23783168	.	AT	A	0	PASS	DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:12,3:6,1
+chr16	24168715	.	TA	T	0	PASS	DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:10,4:5,5
+chr16	24237363	.	C	CTTTCT	0	PASS	DP=21;GPV=1;SPV=0.0031469;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,7:0,4:2,3
+chr16	24380998	.	C	CAA	0	PASS	DP=29;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,8:3,7:2,1
+chr16	25756154	.	GCACA	G	0	PASS	DP=53;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:4,5:3,3:1,2
+chr16	28866800	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:14,6:17,6
+chr16	29053135	.	C	G	0	PASS	DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:1,0:23,4
+chr16	29254389	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.00014241;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:10,6:10,4
+chr16	29713576	.	A	T	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:13,3:1,1
+chr16	29961904	.	T	G	0	PASS	DP=97;GPV=1;SPV=2.5409e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:34,18:24,10:10,8
+chr16	30032642	.	GT	G	0	PASS	DP=46;GPV=1;SPV=0.028437;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,9:14,5:8,4
+chr16	30169000	.	T	TG	0	PASS	DP=79;GPV=1;SPV=0.018965;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,6:18,4:17,2
+chr16	30250297	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:5,3:10,1
+chr16	30297471	.	CT	C	0	PASS	DP=36;GPV=1;SPV=0.0033983;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,9:5,7:4,2
+chr16	31959233	.	C	T	0	PASS	DP=98;GPV=1;SPV=0.034474;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:51,6:22,4:29,2
+chr16	32014442	.	T	TA	0	PASS	DP=82;GPV=1;SPV=0.0001118;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,10:9,3:12,7
+chr16	32071960	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.011057;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:11,1:10,4
+chr16	32082635	.	G	A	0	PASS	DP=140;GPV=1;SPV=0.012801;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:62,11:52,10:10,1
+chr16	32094230	.	C	T	0	PASS	DP=196;GPV=1;SPV=0.032481;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:86,12:51,3:35,9
+chr16	32154617	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.046104;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:16,3:12,6
+chr16	32293572	.	TTTTTTA	T	0	PASS	DP=110;GPV=1;SPV=0.026445;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:54,9:24,4:30,5
+chr16	32298678	.	G	C	0	PASS	DP=53;GPV=1;SPV=0.025505;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:6,4:15,4
+chr16	32805762	.	TCTTTC	T	0	PASS	DP=126;GPV=1;SPV=0.012815;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:55,17:27,4:28,13
+chr16	32838152	.	G	T	0	PASS	DP=561;GPV=1;SPV=0.036478;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:281:245,36:96,14:149,22
+chr16	32839423	.	T	C	0	PASS	DP=222;GPV=1;SPV=0.048544;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:112:95,17:34,7:61,10
+chr16	32840065	.	G	A	0	PASS	DP=504;GPV=1;SPV=0.0021163;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:269:222,47:111,28:111,19
+chr16	33021244	.	T	C	0	PASS	DP=99;GPV=1;SPV=0.012566;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:39,10:19,7:20,3
+chr16	33029848	.	A	C	0	PASS	DP=149;GPV=1;SPV=0.014739;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:53,17:31,6:22,11
+chr16	33035433	.	T	A	0	PASS	DP=232;GPV=1;SPV=0.023528;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:109,21:71,14:38,7
+chr16	33040372	.	T	G	0	PASS	DP=189;GPV=1;SPV=0.045845;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:74,17:30,6:44,11
+chr16	33042087	.	T	C	0	PASS	DP=141;GPV=1;SPV=0.035068;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:86:67,19:40,13:27,6
+chr16	33602215	.	C	CTAG	0	PASS	DP=225;GPV=1;SPV=0.034984;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:94,21:55,17:39,4
+chr16	33718663	.	CAAT	C	0	PASS	DP=148;GPV=1;SPV=0.013983;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:59,18:34,7:25,11
+chr16	34133309	.	G	GA	0	PASS	DP=45;GPV=1;SPV=0.0018044;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:15,9:2,3
+chr16	34575351	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,8:4,5:3,3
+chr16	34790316	.	A	T	0	PASS	DP=130;GPV=1;SPV=0.011042;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:58,9:30,6:28,3
+chr16	35307190	.	G	A	0	PASS	DP=99;GPV=1;SPV=1.2853e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:29,24:13,16:16,8
+chr16	35619905	.	C	T	0	PASS	DP=76;GPV=1;SPV=4.8556e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,18:15,7:10,11
+chr16	36094020	.	C	A	0	PASS	DP=164;GPV=1;SPV=0.01117;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:68,14:27,5:41,9
+chr16	36098635	.	C	T	0	PASS	DP=413;GPV=1;SPV=0.04071;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:210:180,30:106,19:74,11
+chr16	36382885	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:13,6:1,1
+chr16	36470976	.	T	G	0	PASS	DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:20,4:0,0
+chr16	37816259	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:14,2:2,2
+chr16	47538848	.	G	A	0	PASS	DP=91;GPV=1;SPV=5.1236e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:27,23:9,9:18,14
+chr16	50126791	.	C	G	0	PASS	DP=66;GPV=1;SPV=4.4085e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:23,16:15,10:8,6
+chr16	51301860	.	G	T	0	PASS	DP=87;GPV=1;SPV=5.7568e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,15:11,8:17,7
+chr16	52536627	.	C	CTA	0	PASS	DP=25;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,4:1,3:3,1
+chr16	52700844	.	A	T	0	PASS	DP=86;GPV=1;SPV=4.2987e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:10,8:12,7
+chr16	52837994	.	G	A	0	PASS	DP=81;GPV=1;SPV=5.286e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,19:11,13:13,6
+chr16	52929139	.	G	A	0	PASS	DP=68;GPV=1;SPV=2.443e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:14,19:6,11:8,8
+chr16	53017812	.	A	T	0	PASS	DP=66;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,4:15,1:6,3
+chr16	54127403	.	GGTT	G	0	PASS	DP=29;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,10:7,8:0,2
+chr16	54681096	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:14,2:6,3
+chr16	55721867	.	GT	G	0	PASS	DP=92;GPV=1;SPV=0.041747;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:20,7:17,3
+chr16	56568213	.	GAGAAAGAAAGAAAGAA	G	0	PASS	DP=36;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,7:7,6:3,1
+chr16	56740769	.	G	A	0	PASS	DP=152;GPV=1;SPV=0.0026422;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:69,23:39,8:30,15
+chr16	57230005	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,2:2,2
+chr16	57832990	.	C	T	0	PASS	DP=79;GPV=1;SPV=7.7207e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,16:9,6:17,10
+chr16	58817716	.	GT	G	0	PASS	DP=35;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,4:7,2:4,2
+chr16	59697172	.	G	C	0	PASS	DP=73;GPV=1;SPV=0.015836;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:13,3:11,5
+chr16	60296883	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,4:5,3:7,1
+chr16	60739479	.	G	A	0	PASS	DP=81;GPV=1;SPV=0.0037019;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:32,15:15,8:17,7
+chr16	61460072	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.0126;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:22,4:19,3
+chr16	61760283	.	T	TTTTA	0	PASS	DP=86;GPV=1;SPV=0.0073467;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:25,10:10,8
+chr16	63658223	.	C	CAA	0	PASS	DP=34;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:9,4:7,1
+chr16	64432980	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,6:6,5:2,1
+chr16	64520362	.	GT	G	0	PASS	DP=43;GPV=1;SPV=0.016106;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:10,3:5,2
+chr16	65283797	.	A	T	0	PASS	DP=61;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,4:13,3:6,1
+chr16	65576409	.	C	T	0	PASS	DP=90;GPV=1;SPV=5.225e-09;SS=2;SSC=82;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,23:12,16:11,7
+chr16	65690709	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.042336;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:11,2:11,3
+chr16	68020873	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:8,3:7,3
+chr16	68201820	.	CGATGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGGCATAGGAGA	C	0	PASS	DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:13,3:7,1
+chr16	68283590	.	AAG	A	0	PASS	DP=86;GPV=1;SPV=0.02764;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:38,5:19,1:19,4
+chr16	68745593	.	G	A	0	PASS	DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:12,2:8,3
+chr16	69738629	.	GT	G	0	PASS	DP=60;GPV=1;SPV=0.020833;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:15,8:12,3:3,5
+chr16	70853896	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.045291;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:16,2:10,6
+chr16	71030715	.	G	C	0	PASS	DP=124;GPV=1;SPV=0.0025201;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:48,18:27,7:21,11
+chr16	71048938	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.026582;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:17,7:16,3
+chr16	71061490	.	G	A	0	PASS	DP=110;GPV=1;SPV=0.041014;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:50,12:29,6:21,6
+chr16	71124265	.	C	T	0	PASS	DP=86;GPV=1;SPV=4.4803e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:22,19:11,11:11,8
+chr16	71286445	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:16,5:11,3:5,2
+chr16	71380292	.	C	T	0	PASS	DP=17;GPV=1;SPV=0.025058;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:1,6:1,5:0,1
+chr16	71768500	.	C	CAAAAAAAA	0	PASS	DP=39;GPV=1;SPV=0.10482;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,6:6,4:6,2
+chr16	72009509	.	CA	C	0	PASS	DP=26;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,5:2,4:7,1
+chr16	73447373	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:25,1:17,5
+chr16	73826292	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.015276;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:11,6:12,1
+chr16	74084559	.	G	T	0	PASS	DP=86;GPV=1;SPV=0.0014624;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:9,3:28,7
+chr16	74181019	.	GAA	G	0	PASS	DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:19,2:4,2
+chr16	74181028	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:20,2:6,2
+chr16	74358404	.	CA	C	0	PASS	DP=64;GPV=1;SPV=0.039873;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:17,1:8,3
+chr16	74408435	.	C	T	0	PASS	DP=156;GPV=1;SPV=0.023961;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:64,14:37,6:27,8
+chr16	74412400	.	G	T	0	PASS	DP=266;GPV=1;SPV=0.0014102;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:139:106,33:48,15:58,18
+chr16	74425829	.	TA	T	0	PASS	DP=91;GPV=1;SPV=0.025351;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:38,13:20,3:18,10
+chr16	75137461	.	C	CTTTT	0	PASS	DP=24;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,9:3,8:1,1
+chr16	75929766	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.068336;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,5:13,4:8,1
+chr16	76916277	.	GTGTA	G	0	PASS	DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:8,1:8,4
+chr16	76929939	.	A	ATT	0	PASS	DP=40;GPV=1;SPV=0.0013175;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:2,15:2,8:0,7
+chr16	77349524	.	T	TA	0	PASS	DP=48;GPV=1;SPV=0.011322;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:11,4:6,5
+chr16	78490133	.	A	AT	0	PASS	DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:22,2:13,2
+chr16	78723554	.	CTTCTT	C	0	PASS	DP=63;GPV=1;SPV=0.0061323;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,9:6,5:22,4
+chr16	80089327	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.014502;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:7,3:4,5
+chr16	82594630	.	C	T	0	PASS	DP=77;GPV=1;SPV=2.7747e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,19:10,8:15,11
+chr16	82761021	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.0012781;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,13:4,11:4,2
+chr16	82931506	.	T	TC	0	PASS	DP=71;GPV=1;SPV=0.0010847;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,12:18,8:11,4
+chr16	83132455	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.11905;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:0,0:2,4
+chr16	83400122	.	G	GT	0	PASS	DP=72;GPV=1;SPV=9.4663e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:10,7:13,4
+chr16	83564413	.	TTTG	T	0	PASS	DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:12,1:21,3
+chr16	84536779	.	T	TTTTTTTTTTTG	0	PASS	DP=32;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:8,11:1,3:7,8
+chr16	87038636	.	GGGAGGGAGGGAGGGAAGGAA	G	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:15,4:0,0
+chr16	88236683	.	A	G	0	PASS	DP=93;GPV=1;SPV=0.038032;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:49,6:28,1:21,5
+chr16	88501640	.	T	G	0	PASS	DP=73;GPV=1;SPV=0.021613;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:16,1:14,4
+chr16	89325473	.	A	T	0	PASS	DP=68;GPV=1;SPV=0.063124;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:13,4:22,1
+chr16	90180905	.	A	G	0	PASS	DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:4,3:7,7
+chr17	307247	.	C	T	0	PASS	DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:4,2:2,1
+chr17	672109	.	G	GACACACACAC	0	PASS	DP=40;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,9:4,7:2,2
+chr17	768795	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:11,3:1,1
+chr17	963214	.	G	GAC	0	PASS	DP=70;GPV=1;SPV=7.5053e-05;SS=2;SSC=41;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:13,7:11,6
+chr17	1427030	.	CAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=32;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,4:8,3:5,1
+chr17	1775825	.	C	T	0	PASS	DP=87;GPV=1;SPV=1.8106e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:23,22:13,8:10,14
+chr17	2623261	.	CT	C	0	PASS	DP=36;GPV=1;SPV=0.035742;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:8,4:9,4
+chr17	3031324	.	G	GT	0	PASS	DP=127;GPV=1;SPV=0.001535;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:52,18:22,6:30,12
+chr17	3061221	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.025708;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:5,4:6,1
+chr17	4027594	.	C	CTTT	0	PASS	DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:11,3:11,1
+chr17	4280336	.	CTTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,4:8,3:3,1
+chr17	4414140	.	AATGTGT	A	0	PASS	DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:10,3:8,7
+chr17	4567821	.	CTTT	C	0	PASS	DP=25;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,9:1,4:2,5
+chr17	4667996	.	A	G	0	PASS	DP=83;GPV=1;SPV=0.015695;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:18,6:16,5
+chr17	5910630	.	CAAAA	C	0	PASS	DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:6,5:6,1
+chr17	6015119	.	TA	T	0	PASS	DP=54;GPV=1;SPV=0.18206;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:19,4:15,1
+chr17	6516563	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.011374;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:5,10:4,7:1,3
+chr17	6987008	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:5,4:3,1
+chr17	7302655	.	T	TG	0	PASS	DP=36;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,9:12,8:0,1
+chr17	7609931	.	T	TATAC	0	PASS	DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:22,2:13,2
+chr17	8585286	.	G	GTATATATATATATATATA	0	PASS	DP=20;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:3,1:4,3
+chr17	8685358	.	A	G	0	PASS	DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,3:0,1
+chr17	10428686	.	C	CA	0	PASS	DP=83;GPV=1;SPV=3.9497e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:28,13:15,5:13,8
+chr17	10432289	.	C	T	0	PASS	DP=101;GPV=1;SPV=2.0936e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:15,9:18,7
+chr17	11277284	.	A	T	0	PASS	DP=63;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:5,5:1,3:4,2
+chr17	11459218	.	CA	C	0	PASS	DP=48;GPV=1;SPV=0.0042808;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,15:11,13:6,2
+chr17	11954769	.	T	TA	0	PASS	DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:15,2:12,2
+chr17	12351263	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,2:4,1:3,1
+chr17	12410555	.	GT	G	0	PASS	DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:4,4:4,1
+chr17	12828028	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,6:6,5:4,1
+chr17	13045725	.	GA	G	0	PASS	DP=79;GPV=1;SPV=0.00055029;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:16,6:15,5
+chr17	13396788	.	C	T	0	PASS	DP=60;GPV=1;SPV=6.7231e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:5,8:14,5
+chr17	14186986	.	T	G	0	PASS	DP=84;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:4,3:2,2:2,1
+chr17	15585912	.	A	G	0	PASS	DP=87;GPV=1;SPV=0.041058;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:20,2:16,2
+chr17	15730704	.	T	TGTGCGCGC	0	PASS	DP=50;GPV=1;SPV=0.052652;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,6:11,5:14,1
+chr17	17375416	.	T	C	0	PASS	DP=92;GPV=1;SPV=2.0418e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:9,8:12,9
+chr17	17386164	.	A	AGAGAGAGAG	0	PASS	DP=61;GPV=1;SPV=0.085668;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,4:11,2:16,2
+chr17	18305475	.	A	AACACACATAC	0	PASS	DP=60;GPV=1;SPV=0.0023163;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:19,17:8,10:11,7
+chr17	19820053	.	A	T	0	PASS	DP=88;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,5:16,2:12,3
+chr17	20470600	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.014154;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,3:6,5
+chr17	20555213	.	T	C	0	PASS	DP=121;GPV=1;SPV=0.019395;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:24,2:22,8
+chr17	20608791	.	C	CTT	0	PASS	DP=54;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:19,10:10,2:9,8
+chr17	21056611	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.058259;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:11,2:20,3
+chr17	21344228	.	C	T	0	PASS	DP=131;GPV=1;SPV=0.029956;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:51,15:26,12:25,3
+chr17	21410094	.	G	T	0	PASS	DP=109;GPV=1;SPV=0.016322;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:21,3:23,2
+chr17	21512963	.	GCTGTCCCTGGCCTAGGGCGCTCCTCCCCAAATTTTCCAAGGCTTCTTTTGGCTGCCAGGGAT	G	0	PASS	DP=59;GPV=1;SPV=0.045726;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:11,5:14,2
+chr17	21582606	.	T	G	0	PASS	DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:16,1:13,3
+chr17	21682302	.	C	A	0	PASS	DP=111;GPV=1;SPV=0.0059749;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:48,7:23,5:25,2
+chr17	21730180	.	C	CTTT	0	PASS	DP=90;GPV=1;SPV=0.035679;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,12:14,3:20,9
+chr17	21839938	.	C	T	0	PASS	DP=111;GPV=1;SPV=0.035224;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:45,6:27,2:18,4
+chr17	22133455	.	A	C	0	PASS	DP=276;GPV=1;SPV=0.038188;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:150:133,17:67,7:66,10
+chr17	22834926	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:7,1:13,3
+chr17	22839887	.	G	C	0	PASS	DP=169;GPV=1;SPV=0.044058;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:99:82,17:37,7:45,10
+chr17	22869952	.	A	G	0	PASS	DP=88;GPV=1;SPV=0.017284;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:23,3:17,3
+chr17	22881965	.	G	C	0	PASS	DP=123;GPV=1;SPV=0.011784;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:61,11:45,4:16,7
+chr17	22919047	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:15,4:1,0
+chr17	22948887	.	C	G	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr17	22957215	.	C	A	0	PASS	DP=68;GPV=1;SPV=0.045335;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:11,4:17,5
+chr17	23070454	.	T	C	0	PASS	DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:1,3:6,2
+chr17	23090370	.	C	A	0	PASS	DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:0,0:12,4
+chr17	26625487	.	A	G	0	PASS	DP=149;GPV=1;SPV=0.017973;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:72,9:33,2:39,7
+chr17	26742703	.	T	C	0	PASS	DP=207;GPV=1;SPV=0.0038604;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:107:85,15:41,10:44,5
+chr17	26752099	.	A	G	0	PASS	DP=326;GPV=1;SPV=0.044761;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:186:159,27:34,7:125,20
+chr17	26777277	.	A	G	0	PASS	DP=158;GPV=1;SPV=0.036831;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:64,9:30,3:34,6
+chr17	26777345	.	GT	G	0	PASS	DP=208;GPV=1;SPV=0.030216;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:102:86,16:42,5:44,11
+chr17	26777377	.	G	A	0	PASS	DP=243;GPV=1;SPV=0.031422;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:123:102,21:44,8:58,13
+chr17	27001136	.	C	CCTT	0	PASS	DP=97;GPV=1;SPV=0.03904;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:41,11:22,5:19,6
+chr17	27055172	.	CA	C	0	PASS	DP=56;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,7:14,6:4,1
+chr17	29380622	.	A	C	0	PASS	DP=94;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:4,3:0,2:4,1
+chr17	30980186	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:5,1:2,1
+chr17	31563409	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:2,1:3,6
+chr17	32094600	.	GA	G	0	PASS	DP=53;GPV=1;SPV=0.082705;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:19,3:9,2
+chr17	32697643	.	A	T	0	PASS	DP=84;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:44:0,3:0,1:0,2
+chr17	34508057	.	AGAGAGAGAAAGGAAAG	A	0	PASS	DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:27,3:4,1
+chr17	36714264	.	C	CTT	0	PASS	DP=37;GPV=1;SPV=0.19543;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,6:13,3:6,3
+chr17	37100630	.	C	CA	0	PASS	DP=69;GPV=1;SPV=0.001025;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,10:17,9:9,1
+chr17	37902894	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:0,0:5,4
+chr17	39025970	.	AG	A	0	PASS	DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:15,2:8,2
+chr17	39802221	.	CA	C	0	PASS	DP=35;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:11,3:6,1
+chr17	39842058	.	AAC	A	0	PASS	DP=47;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,9:3,5:8,4
+chr17	39885207	.	G	GT	0	PASS	DP=63;GPV=1;SPV=0.0074853;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,11:15,5:5,6
+chr17	42438009	.	T	TG	0	PASS	DP=43;GPV=1;SPV=0.0025185;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:6,7:4,5
+chr17	43696346	.	TC	T	0	PASS	DP=100;GPV=1;SPV=4.7646e-09;SS=2;SSC=83;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:30,29:21,13:9,16
+chr17	45218112	.	TTGTTTTTG	T	0	PASS	DP=36;GPV=1;SPV=0.020557;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:4,2:6,4
+chr17	45598064	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,6:8,5:5,1
+chr17	45612517	.	CTTT	C	0	PASS	DP=54;GPV=1;SPV=0.012526;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,8:10,7:9,1
+chr17	46230687	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:11,7:11,5
+chr17	46257213	.	G	A	0	PASS	DP=114;GPV=1;SPV=0.033172;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:58,9:28,4:30,5
+chr17	46259199	.	CAACA	C	0	PASS	DP=120;GPV=1;SPV=0.018868;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:51,15:40,6:11,9
+chr17	46688854	.	A	T	0	PASS	DP=25;GPV=1;SPV=0.0096894;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:6,5:1,1
+chr17	47000062	.	AT	A	0	PASS	DP=51;GPV=1;SPV=0.019067;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,6:8,4:10,2
+chr17	47169645	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.035086;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:12,2:10,4
+chr17	47751895	.	T	A	0	PASS	DP=78;GPV=1;SPV=4.6734e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:24,23:13,9:11,14
+chr17	47889622	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:5,7:6,1
+chr17	49083686	.	T	G	0	PASS	DP=67;GPV=1;SPV=0.00077962;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:15,9:8,5:7,4
+chr17	49154021	.	T	G	0	PASS	DP=82;GPV=1;SPV=0.0024191;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:17,7:18,2
+chr17	49635632	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.0012607;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,9:6,8:3,1
+chr17	50108261	.	G	A	0	PASS	DP=96;GPV=1;SPV=0.00025621;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:17,6:20,5
+chr17	51010568	.	GA	G	0	PASS	DP=55;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,11:7,9:11,2
+chr17	51983874	.	G	A	0	PASS	DP=73;GPV=1;SPV=1.6283e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:11,8:10,9
+chr17	52079849	.	C	T	0	PASS	DP=89;GPV=1;SPV=2.2039e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:28,22:18,10:10,12
+chr17	52307276	.	C	T	0	PASS	DP=82;GPV=1;SPV=3.7879e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:25,21:14,12:11,9
+chr17	52941175	.	T	G	0	PASS	DP=96;GPV=1;SPV=1.3599e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:33,19:17,10:16,9
+chr17	53736331	.	A	T	0	PASS	DP=78;GPV=1;SPV=0.002624;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:17,6:14,2
+chr17	57062212	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.034267;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,10:2,3:17,7
+chr17	57884192	.	CTT	C	0	PASS	DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:8,5:2,2
+chr17	58502158	.	T	A	0	PASS	DP=69;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:7,4:6,3:1,1
+chr17	59999606	.	G	C	0	PASS	DP=53;GPV=1;SPV=0.037566;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:7,2:11,6
+chr17	62021134	.	C	A	0	PASS	DP=120;GPV=1;SPV=0.018274;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:53,8:34,3:19,5
+chr17	62316628	.	C	CAAA	0	PASS	DP=38;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:5,5:7,1
+chr17	62457987	.	G	A	0	PASS	DP=91;GPV=1;SPV=0.027098;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:16,6:22,1
+chr17	64048951	.	G	A	0	PASS	DP=90;GPV=1;SPV=8.6716e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:14,5:15,9
+chr17	64888377	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.039749;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:17,3:16,9
+chr17	64916942	.	CAA	C	0	PASS	DP=82;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:26,8:6,3
+chr17	65346040	.	CA	C	0	PASS	DP=49;GPV=1;SPV=0.008934;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,7:16,2:3,5
+chr17	65639836	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:9,4:5,1
+chr17	67300355	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.075976;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:28,2:15,3
+chr17	67300610	.	G	A	0	PASS	DP=81;GPV=1;SPV=8.6693e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:21,19:9,10:12,9
+chr17	69177955	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:5,3:2,1
+chr17	69361949	.	CCCTT	C	0	PASS	DP=36;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,5:1,3:7,2
+chr17	69422124	.	A	AT	0	PASS	DP=39;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,9:12,6:1,3
+chr17	69562661	.	CTTTTTTTTTTTTTTTTTTTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.090909;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,6:1,5:2,1
+chr17	69622108	.	T	C	0	PASS	DP=87;GPV=1;SPV=7.0937e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:26,24:15,14:11,10
+chr17	70408174	.	C	T	0	PASS	DP=88;GPV=1;SPV=0.021074;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:45,7:19,1:26,6
+chr17	70858401	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.12392;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,4:24,3:10,1
+chr17	71150579	.	C	CT	0	PASS	DP=50;GPV=1;SPV=0.008646;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,8:7,6:6,2
+chr17	71338884	.	C	G	0	PASS	DP=40;GPV=1;SPV=0.0094041;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:4,2:8,3
+chr17	71338888	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.020689;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:5,2:10,3
+chr17	71338895	.	T	TC	0	PASS	DP=45;GPV=1;SPV=0.0091605;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:7,2:9,4
+chr17	71365860	.	C	T	0	PASS	DP=52;GPV=1;SPV=0.037596;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,7:4,4:6,3
+chr17	71584822	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.012101;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:4,4:10,8
+chr17	71720755	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.0084993;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:18,4:23,4
+chr17	73296419	.	A	C	0	PASS	DP=71;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:7,2:3,1:4,1
+chr17	73635627	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.00274;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:34,9:16,3:18,6
+chr17	73749472	.	TGAA	T	0	PASS	DP=56;GPV=1;SPV=0.047242;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:13,4:12,4
+chr17	74600273	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.013139;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,5:15,1:6,4
+chr17	74733466	.	GGA	G	0	PASS	DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:6,4:5,3
+chr17	74818759	.	G	T	0	PASS	DP=119;GPV=1;SPV=4.7009e-10;SS=2;SSC=93;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:37,32:18,15:19,17
+chr17	75269548	.	CTTTTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:9,2:4,2
+chr17	75674711	.	T	G	0	PASS	DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:13,2:13,2
+chr17	75687919	.	T	G	0	PASS	DP=65;GPV=1;SPV=1.2874e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:18,22:7,12:11,10
+chr17	76388585	.	C	A	0	PASS	DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:1,1:7,4
+chr17	77238107	.	G	GTT	0	PASS	DP=74;GPV=1;SPV=0.00041739;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:23,16:16,12:7,4
+chr17	77334421	.	CA	C	0	PASS	DP=56;GPV=1;SPV=0.037837;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:9,7:13,3
+chr17	77376672	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.016064;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:46,6:26,4:20,2
+chr17	78551146	.	C	G	0	PASS	DP=94;GPV=1;SPV=7.2955e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:33,16:15,11:18,5
+chr17	79746195	.	TAAAAAAAAAAAAAAAAAAAAAA	T	0	PASS	DP=27;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,6:4,5:6,1
+chr17	80024394	.	GAC	G	0	PASS	DP=75;GPV=1;SPV=0.04045;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:16,3:23,3
+chr17	80889970	.	C	T	0	PASS	DP=27;GPV=1;SPV=0.0077803;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:3,4:5,5
+chr17	81425680	.	G	GGTT	0	PASS	DP=29;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:8,2:7,2
+chr17	82905817	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.036355;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:24,5:12,2
+chr17	82958958	.	GT	G	0	PASS	DP=36;GPV=1;SPV=0.075059;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,6:8,1:9,5
+chr18	83504	.	G	C	0	PASS	DP=96;GPV=1;SPV=0.049419;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:23,5:18,1
+chr18	83870	.	G	A	0	PASS	DP=100;GPV=1;SPV=0.02166;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:40,9:24,3:16,6
+chr18	1377693	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:11,4:14,1
+chr18	1962813	.	A	ATAC	0	PASS	DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,9:4,2:5,7
+chr18	2596677	.	T	C	0	PASS	DP=89;GPV=1;SPV=3.9778e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:34,24:16,11:18,13
+chr18	3461843	.	A	ATTTTTTTTT	0	PASS	DP=56;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,9:8,3:12,6
+chr18	3680788	.	C	CAA	0	PASS	DP=59;GPV=1;SPV=0.012955;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:17,11:10,9:7,2
+chr18	4004943	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,6:12,1:13,5
+chr18	4548656	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.0017478;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:16,7:17,3
+chr18	4869281	.	A	C	0	PASS	DP=78;GPV=1;SPV=3.542e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:13,8:10,7
+chr18	6090790	.	A	ATT	0	PASS	DP=49;GPV=1;SPV=0.010994;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:10,3:5,7
+chr18	6634495	.	A	T	0	PASS	DP=85;GPV=1;SPV=3.3115e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,19:18,9:7,10
+chr18	7297782	.	GTTGAACAGCC	G	0	PASS	DP=86;GPV=1;SPV=3.6769e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:17,10:14,4
+chr18	7446124	.	A	ATTT	0	PASS	DP=44;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:11,9:5,6:6,3
+chr18	7960482	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.033247;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,5:6,1:5,4
+chr18	8875363	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:3,1:9,4
+chr18	9369140	.	TA	T	0	PASS	DP=75;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:5,4:0,2:5,2
+chr18	9645519	.	C	T	0	PASS	DP=72;GPV=1;SPV=1.7753e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:14,7:6,9
+chr18	10567305	.	C	CTTTTT	0	PASS	DP=19;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,1:2,3
+chr18	10607078	.	T	A	0	PASS	DP=108;GPV=1;SPV=0.0057987;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:30,4:16,6
+chr18	10995082	.	A	AAAAAAAAAAGAAAG	0	PASS	DP=59;GPV=1;SPV=0.023702;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,9:9,6:8,3
+chr18	11018382	.	CGTGT	C	0	PASS	DP=56;GPV=1;SPV=0.0075692;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:11,8:10,7:1,1
+chr18	12270894	.	CTT	C	0	PASS	DP=30;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,4:5,3:3,1
+chr18	12788432	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,6:3,4:3,2
+chr18	13046829	.	C	CT	0	PASS	DP=51;GPV=1;SPV=0.0041493;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,11:6,5:8,6
+chr18	14674558	.	C	G	0	PASS	DP=76;GPV=1;SPV=0.027169;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:16,4:17,1
+chr18	15393853	.	TA	T	0	PASS	DP=83;GPV=1;SPV=0.0382;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:15,2:15,5
+chr18	15405554	.	C	T	0	PASS	DP=289;GPV=1;SPV=0.0068706;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:149:133,16:46,5:87,11
+chr18	15407537	.	C	G	0	PASS	DP=640;GPV=1;SPV=0.0073785;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:347:299,48:143,22:156,26
+chr18	15407609	.	T	C	0	PASS	DP=598;GPV=1;SPV=0.023319;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:310:266,44:134,18:132,26
+chr18	15476491	.	T	G	0	PASS	DP=82;GPV=1;SPV=0.017632;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:34,8:4,1:30,7
+chr18	15482160	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:6,4:7,1
+chr18	15490420	.	G	A	0	PASS	DP=137;GPV=1;SPV=0.0062772;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:53,6:20,4:33,2
+chr18	15492464	.	T	C	0	PASS	DP=210;GPV=1;SPV=0.0048146;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:101,14:47,7:54,7
+chr18	15499116	.	G	A	0	PASS	DP=116;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:46,15:40,13:6,2
+chr18	15516659	.	A	T	0	PASS	DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:3,2:13,2
+chr18	15528075	.	G	C	0	PASS	DP=206;GPV=1;SPV=0.030672;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:96,18:28,6:68,12
+chr18	15529602	.	TC	T	0	PASS	DP=162;GPV=1;SPV=0.012138;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:67,16:19,7:48,9
+chr18	15584624	.	A	C	0	PASS	DP=56;GPV=1;SPV=0.11411;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:7,4:25,1
+chr18	15590084	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:10,4:11,2
+chr18	15595349	.	G	A	0	PASS	DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:2,3:7,2
+chr18	15601574	.	G	C	0	PASS	DP=70;GPV=1;SPV=0.049775;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:10,5:18,6
+chr18	15647625	.	C	A	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:15,4:0,0
+chr18	15659226	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,2:8,2
+chr18	15659867	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.019899;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:7,4:7,2
+chr18	15689453	.	GC	G	0	PASS	DP=282;GPV=1;SPV=0.016853;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:140,16:35,12:105,4
+chr18	15707448	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:5,1:2,1
+chr18	15731936	.	A	C	0	PASS	DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:0,4:16,1
+chr18	15761508	.	G	T	0	PASS	DP=59;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:28,4:2,0
+chr18	16047156	.	C	G	0	PASS	DP=152;GPV=1;SPV=0.025835;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:55,13:35,9:20,4
+chr18	16855255	.	T	C	0	PASS	DP=171;GPV=1;SPV=0.033504;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:74,14:31,2:43,12
+chr18	17261111	.	G	T	0	PASS	DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:11,4:0,0
+chr18	17415801	.	C	T	0	PASS	DP=87;GPV=1;SPV=0.030376;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:14,5:22,7
+chr18	17638914	.	G	A	0	PASS	DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,3:4,1
+chr18	18127189	.	G	A	0	PASS	DP=52;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:10,1:12,4
+chr18	18558206	.	C	G	0	PASS	DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:0,0:5,4
+chr18	18582541	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.023562;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:12,4:3,1
+chr18	19054139	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:3,4:7,4
+chr18	19293697	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:11,3:2,1
+chr18	19375972	.	G	T	0	PASS	DP=53;GPV=1;SPV=0.047106;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:2,1:20,6
+chr18	20343782	.	T	A	0	PASS	DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:4,2:12,2
+chr18	20759837	.	G	T	0	PASS	DP=124;GPV=1;SPV=0.03415;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:64,9:25,8:39,1
+chr18	22010504	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:4,8:1,3:3,5
+chr18	22964628	.	AAT	A	0	PASS	DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:18,3:14,1
+chr18	25487439	.	A	AAAT	0	PASS	DP=36;GPV=1;SPV=0.02037;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,5:6,4:3,1
+chr18	30817403	.	G	T	0	PASS	DP=88;GPV=1;SPV=0.001488;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:40,11:19,7:21,4
+chr18	31353073	.	G	T	0	PASS	DP=86;GPV=1;SPV=0.026101;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:19,4:23,2
+chr18	32662915	.	T	C	0	PASS	DP=81;GPV=1;SPV=1.9826e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:25,17:12,4:13,13
+chr18	34046607	.	C	CATATATAT	0	PASS	DP=21;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,4:6,3:0,1
+chr18	34436623	.	CTTT	C	0	PASS	DP=30;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:4,3:8,1
+chr18	34549507	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.0001464;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:16,8:11,6
+chr18	35825421	.	TTA	T	0	PASS	DP=62;GPV=1;SPV=0.042775;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:13,4:11,2
+chr18	35830911	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.068133;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:26,2:9,3
+chr18	36720699	.	T	C	0	PASS	DP=66;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:20,5:9,4:11,1
+chr18	37052182	.	C	A	0	PASS	DP=86;GPV=1;SPV=0.00017146;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:38,17:18,9:20,8
+chr18	38726232	.	A	G	0	PASS	DP=36;GPV=1;SPV=0.047035;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:5,2:4,2
+chr18	40562185	.	A	G	0	PASS	DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:10,7:8,5
+chr18	41653016	.	C	A	0	PASS	DP=88;GPV=1;SPV=0.002256;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,8:16,6:19,2
+chr18	43115119	.	T	C	0	PASS	DP=79;GPV=1;SPV=0.00032813;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:11,5:17,5
+chr18	43242078	.	T	A	0	PASS	DP=63;GPV=1;SPV=5.4752e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,13:8,4:12,9
+chr18	48043953	.	G	T	0	PASS	DP=73;GPV=1;SPV=0.00064879;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:17,8:15,6
+chr18	49292351	.	GACAGACAC	G	0	PASS	DP=58;GPV=1;SPV=0.020482;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,6:14,4:10,2
+chr18	49454907	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:8,9:5,2
+chr18	50250236	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.073628;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:14,3:21,2
+chr18	52318204	.	C	A	0	PASS	DP=84;GPV=1;SPV=6.642e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:28,24:11,14:17,10
+chr18	52330027	.	T	C	0	PASS	DP=96;GPV=1;SPV=1.0254e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:35,23:20,10:15,13
+chr18	52765199	.	A	ATTT	0	PASS	DP=44;GPV=1;SPV=0.030925;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:8,1:8,4
+chr18	52984585	.	T	A	0	PASS	DP=89;GPV=1;SPV=1.267e-10;SS=2;SSC=98;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:17,22:5,8:12,14
+chr18	53663093	.	C	A	0	PASS	DP=85;GPV=1;SPV=0.02021;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:15,2:14,2
+chr18	55511329	.	T	TAA	0	PASS	DP=41;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,6:13,5:4,1
+chr18	55866048	.	G	T	0	PASS	DP=76;GPV=1;SPV=8.8861e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,14:8,10:15,4
+chr18	56379548	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:4,9:1,8:3,1
+chr18	60265967	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,4:2,3:6,1
+chr18	60756331	.	AGG	A	0	PASS	DP=48;GPV=1;SPV=0.0012994;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:5,6:10,2
+chr18	60756348	.	C	T	0	PASS	DP=46;GPV=1;SPV=0.040169;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:4,3:13,1
+chr18	61780003	.	A	ACACC	0	PASS	DP=22;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,3:0,1:2,2
+chr18	61971779	.	A	ATT	0	PASS	DP=63;GPV=1;SPV=0.046785;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:11,5:11,4
+chr18	62951812	.	AT	A	0	PASS	DP=55;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:9,7:13,3
+chr18	62993737	.	G	GGTGT	0	PASS	DP=77;GPV=1;SPV=0.0046122;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,15:18,8:9,7
+chr18	63050845	.	T	A	0	PASS	DP=64;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:9,4:8,2:1,2
+chr18	63758467	.	C	T	0	PASS	DP=76;GPV=1;SPV=2.8955e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:22,22:13,9:9,13
+chr18	64955064	.	T	A	0	PASS	DP=94;GPV=1;SPV=1.4977e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:33,20:16,7:17,13
+chr18	65277414	.	C	G	0	PASS	DP=78;GPV=1;SPV=0.020648;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:14,2:18,3
+chr18	65782057	.	C	T	0	PASS	DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr18	65829775	.	A	AGTGTGT	0	PASS	DP=35;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,8:8,6:4,2
+chr18	66019160	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:14,1:21,3
+chr18	66111606	.	AG	A	0	PASS	DP=33;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:5,1:2,4
+chr18	66476437	.	G	GTTTTTTT	0	PASS	DP=30;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:5,6:3,4:2,2
+chr18	67746907	.	C	CA	0	PASS	DP=50;GPV=1;SPV=0.0017074;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:9,5:6,2
+chr18	67773429	.	TA	T	0	PASS	DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:3,1:10,3
+chr18	70211408	.	A	ATAAAAT	0	PASS	DP=47;GPV=1;SPV=0.019439;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,6:12,3:4,3
+chr18	70211419	.	AC	A	0	PASS	DP=58;GPV=1;SPV=0.041527;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:19,4:3,2
+chr18	70211425	.	C	A	0	PASS	DP=54;GPV=1;SPV=0.016051;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,8:15,5:2,3
+chr18	71425609	.	T	A	0	PASS	DP=68;GPV=1;SPV=0.00079179;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:11,3:11,5
+chr18	73245252	.	C	CA	0	PASS	DP=55;GPV=1;SPV=0.043835;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:14,1:8,3
+chr18	74229041	.	CAA	C	0	PASS	DP=58;GPV=1;SPV=0.0096376;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:15,11:10,5
+chr18	74276528	.	G	GCACA	0	PASS	DP=57;GPV=1;SPV=0.0090069;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:13,9:11,6:2,3
+chr18	74616946	.	ACCACACG	A	0	PASS	DP=47;GPV=1;SPV=0.06407;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:8,2:15,3
+chr18	75406241	.	G	A	0	PASS	DP=93;GPV=1;SPV=3.9474e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:31,16:8,10:23,6
+chr18	76764892	.	GT	G	0	PASS	DP=21;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,3:3,1
+chr18	79340984	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.034849;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:9,1:22,3
+chr18	79479582	.	G	T	0	PASS	DP=115;GPV=1;SPV=3.6015e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:40,20:19,8:21,12
+chr18	79687173	.	T	C	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:3,2:7,2
+chr18	79807965	.	G	T	0	PASS	DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:0,1:11,3
+chr19	236375	.	A	G	0	PASS	DP=53;GPV=1;SPV=0.0076814;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:13,6:8,1
+chr19	351062	.	T	TAA	0	PASS	DP=33;GPV=1;SPV=0.26815;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:18,3:8,2:10,1
+chr19	718514	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.00102;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:17,4:19,5
+chr19	735177	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:4,2:5,2
+chr19	1780973	.	T	TAAAA	0	PASS	DP=52;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:13,3:7,5
+chr19	2349302	.	T	C	0	PASS	DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:4,1:9,3
+chr19	2707883	.	A	C	0	PASS	DP=77;GPV=1;SPV=2.2804e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:18,20:12,13:6,7
+chr19	3078048	.	GAAGA	G	0	PASS	DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:19,2:7,2
+chr19	3078056	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:22,2:11,2
+chr19	3815759	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.0004679;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:9,9:12,6
+chr19	3885109	.	T	TAA	0	PASS	DP=33;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,5:12,4:5,1
+chr19	3977414	.	C	T	0	PASS	DP=108;GPV=1;SPV=0.0055282;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:46,7:29,3:17,4
+chr19	4737346	.	A	T	0	PASS	DP=23;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,2:0,0:4,2
+chr19	5409321	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.012883;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:13,6:9,5
+chr19	5477430	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:5,3:5,1:0,2
+chr19	5982652	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.15091;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:13,4:8,1
+chr19	7061145	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:6,5:6,1
+chr19	7599423	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr19	8326631	.	C	CAA	0	PASS	DP=48;GPV=1;SPV=0.0028145;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:4,12:1,9:3,3
+chr19	8510286	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:8,7:5,5:3,2
+chr19	8768742	.	G	A	0	PASS	DP=172;GPV=1;SPV=0.028342;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:73,12:54,8:19,4
+chr19	8774970	.	G	C	0	PASS	DP=298;GPV=1;SPV=0.015225;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:157:137,20:60,12:77,8
+chr19	8890533	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.015262;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:16,4:18,3
+chr19	8969621	.	GAA	G	0	PASS	DP=52;GPV=1;SPV=0.012947;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:18,4:0,1
+chr19	10028368	.	T	C	0	PASS	DP=73;GPV=1;SPV=0.049793;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:18,8:12,4:6,4
+chr19	10262018	.	G	C	0	PASS	DP=92;GPV=1;SPV=0.00094537;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:25,8:17,4
+chr19	10577423	.	CTTTTT	C	0	PASS	DP=33;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,6:5,3:7,3
+chr19	10665615	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.023332;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,12:9,4:15,8
+chr19	11587555	.	GGA	G	0	PASS	DP=29;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:6,4:1,1
+chr19	12308693	.	A	AATAT	0	PASS	DP=29;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,6:8,3:2,3
+chr19	12402416	.	C	CTT	0	PASS	DP=67;GPV=1;SPV=0.045087;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,10:20,9:4,1
+chr19	12981782	.	CT	C	0	PASS	DP=38;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:10,3:7,1
+chr19	14762629	.	AT	A	0	PASS	DP=77;GPV=1;SPV=0.020491;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:18,5:10,6
+chr19	15533591	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.0035559;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,10:4,9:4,1
+chr19	15688367	.	CA	C	0	PASS	DP=75;GPV=1;SPV=0.00058715;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:19,7:12,5
+chr19	15834007	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.000105;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:20,5:13,7
+chr19	16063511	.	GGAAAGAAA	G	0	PASS	DP=20;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,2:5,2:0,0
+chr19	16295080	.	C	CAAAA	0	PASS	DP=35;GPV=1;SPV=0.018518;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:11,8:4,1
+chr19	16790643	.	A	T	0	PASS	DP=72;GPV=1;SPV=0.033332;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:13,5:17,2
+chr19	17607489	.	C	G	0	PASS	DP=24;GPV=1;SPV=0.024499;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:6,7:0,1
+chr19	17656852	.	CAAAAAA	C	0	PASS	DP=57;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,8:6,5:4,3
+chr19	18885523	.	T	G	0	PASS	DP=45;GPV=1;SPV=0.13907;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:17,3:9,2
+chr19	20008074	.	C	T	0	PASS	DP=100;GPV=1;SPV=0.019259;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:47,6:21,5:26,1
+chr19	20063524	.	CTT	C	0	PASS	DP=30;GPV=1;SPV=0.004958;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:3,4:3,3
+chr19	20342244	.	CA	C	0	PASS	DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:15,2:15,2
+chr19	21074205	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.0035182;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:14,8:11,2
+chr19	21112816	.	A	AT	0	PASS	DP=19;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:2,3:1,2
+chr19	22396955	.	C	T	0	PASS	DP=86;GPV=1;SPV=6.7474e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:26,18:12,6:14,12
+chr19	22414244	.	A	C	0	PASS	DP=40;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,2:5,1:1,1
+chr19	22984571	.	AAAAAATAC	A	0	PASS	DP=50;GPV=1;SPV=0.020382;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:14,4:9,3
+chr19	23373346	.	TTA	T	0	PASS	DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:9,4:6,4
+chr19	23373387	.	A	T	0	PASS	DP=44;GPV=1;SPV=0.14404;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:14,5:6,1:8,4
+chr19	23472408	.	TTA	T	0	PASS	DP=65;GPV=1;SPV=0.02409;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:12,4:13,3
+chr19	25143274	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:17,4:0,0
+chr19	26158860	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:7,4:0,0
+chr19	27498371	.	T	G	0	PASS	DP=79;GPV=1;SPV=1.2351e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:30,24:17,9:13,15
+chr19	27860475	.	C	T	0	PASS	DP=68;GPV=1;SPV=1.4339e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:20,21:11,10:9,11
+chr19	30808091	.	CT	C	0	PASS	DP=60;GPV=1;SPV=0.0011108;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:6,9:2,6:4,3
+chr19	31893176	.	CA	C	0	PASS	DP=52;GPV=1;SPV=0.0083484;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:15,10:2,2
+chr19	32902046	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:3,2:16,2
+chr19	33223309	.	GAAA	G	0	PASS	DP=41;GPV=1;SPV=0.033617;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,7:11,6:6,1
+chr19	34201113	.	G	C	0	PASS	DP=70;GPV=1;SPV=4.5018e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,15:9,6:11,9
+chr19	34658808	.	AACAAC	A	0	PASS	DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:15,5:11,1
+chr19	35105578	.	CCACCATCACCATCATCAT	C	0	PASS	DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:9,5:12,6
+chr19	36163532	.	C	CA	0	PASS	DP=36;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,9:10,8:4,1
+chr19	36501143	.	GTT	G	0	PASS	DP=38;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:13,3:8,1
+chr19	36786266	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:7,5:3,2
+chr19	37273558	.	A	G	0	PASS	DP=185;GPV=1;SPV=0.022957;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:81,11:36,5:45,6
+chr19	37278500	.	A	C	0	PASS	DP=44;GPV=1;SPV=0.20188;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:26,4:0,0
+chr19	37730225	.	AT	A	0	PASS	DP=51;GPV=1;SPV=0.0032919;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:13,7:7,2
+chr19	37900560	.	C	CAAAA	0	PASS	DP=37;GPV=1;SPV=0.033617;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:12,6:5,1
+chr19	38673657	.	A	T	0	PASS	DP=41;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:26:0,4:0,1:0,3
+chr19	39098275	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,6:4,1
+chr19	39430213	.	C	CTTT	0	PASS	DP=41;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,6:8,4:8,2
+chr19	40164027	.	T	G	0	PASS	DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:14,2:10,2
+chr19	40287856	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,5:5,1
+chr19	40885953	.	G	GT	0	PASS	DP=48;GPV=1;SPV=0.0037259;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,14:5,7:9,7
+chr19	41188848	.	T	A	0	PASS	DP=27;GPV=1;SPV=0.048951;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,4:2,3:1,1
+chr19	41723946	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.012459;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:17,8:5,2
+chr19	41880481	.	G	T	0	PASS	DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:4,7:5,1
+chr19	42087595	.	T	A	0	PASS	DP=40;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,4:0,0:8,4
+chr19	42199199	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.00047993;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:20,7:23,4
+chr19	43985541	.	T	C	0	PASS	DP=80;GPV=1;SPV=0.001936;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:34,15:28,4:6,11
+chr19	44688183	.	C	G	0	PASS	DP=84;GPV=1;SPV=0.011495;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:23,7:10,1:13,6
+chr19	44721406	.	G	GA	0	PASS	DP=23;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:5,4:2,1
+chr19	44946191	.	C	CTGTG	0	PASS	DP=50;GPV=1;SPV=0.0063756;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,8:4,7:11,1
+chr19	46562814	.	G	A	0	PASS	DP=86;GPV=1;SPV=2.7228e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:31,22:18,12:13,10
+chr19	46863942	.	C	T	0	PASS	DP=86;GPV=1;SPV=0.00054148;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:33,10:16,6:17,4
+chr19	47064721	.	T	TA	0	PASS	DP=52;GPV=1;SPV=0.0025984;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,13:7,5:11,8
+chr19	47300513	.	T	TTC	0	PASS	DP=45;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:4,1:11,3
+chr19	47707784	.	CA	C	0	PASS	DP=47;GPV=1;SPV=0.00025886;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:10,16:6,13:4,3
+chr19	47840703	.	C	CTTTT	0	PASS	DP=41;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:8,2:6,5
+chr19	47841571	.	A	AT	0	PASS	DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:15,2:11,2
+chr19	47953157	.	A	C	0	PASS	DP=85;GPV=1;SPV=0.043478;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:15,4:15,6
+chr19	48153773	.	C	CACACACACACTT	0	PASS	DP=41;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,7:3,1:7,6
+chr19	48521892	.	G	GTCTCTCTC	0	PASS	DP=35;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:1,2:14,2
+chr19	48648203	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:11,9:4,2
+chr19	48664051	.	G	A	0	PASS	DP=87;GPV=1;SPV=2.4081e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:25,26:15,17:10,9
+chr19	48710414	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:8,4:0,1
+chr19	50452504	.	G	GTATCTATC	0	PASS	DP=63;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:20,9:9,6:11,3
+chr19	50967511	.	C	CCACACACACACA	0	PASS	DP=58;GPV=1;SPV=0.064666;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,4:15,3:10,1
+chr19	52090654	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.0020828;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,10:7,5:2,5
+chr19	52376496	.	GCC	G	0	PASS	DP=32;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:1,3:0,0:1,3
+chr19	53423658	.	T	A	0	PASS	DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:4,2:0,2
+chr19	53809517	.	C	CAA	0	PASS	DP=54;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,9:8,8:5,1
+chr19	54825943	.	T	C	0	PASS	DP=97;GPV=1;SPV=0.011999;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:46,7:19,3:27,4
+chr19	54926205	.	G	GGTGTGTGTGTGTGT	0	PASS	DP=65;GPV=1;SPV=0.0025413;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,10:10,5:5,5
+chr19	55472169	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.047937;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:6,1:12,9
+chr19	56067747	.	T	TAAA	0	PASS	DP=48;GPV=1;SPV=0.020191;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,10:6,8:10,2
+chr19	57110398	.	A	T	0	PASS	DP=52;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:12,3:9,2
+chr19	57330913	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.019426;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:8,3:8,4
+chr19	57690459	.	GTATA	G	0	PASS	DP=86;GPV=1;SPV=0.046608;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,7:11,2:12,5
+chr19	58241180	.	T	TATA	0	PASS	DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:8,2:11,2
+chr19	58427387	.	TTTCTTTCTTTCTTTCTTTCC	T	0	PASS	DP=36;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,9:1,3:9,6
+chr2	932430	.	CCT	C	0	PASS	DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:14,1:5,3
+chr2	932433	.	G	T	0	PASS	DP=50;GPV=1;SPV=0.038102;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:17,2:5,3
+chr2	1975247	.	T	TGCCAGATCCCACCGCCAGATCCCACC	0	PASS	DP=53;GPV=1;SPV=0.0079397;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:11,6:7,3
+chr2	2122837	.	A	ATG	0	PASS	DP=46;GPV=1;SPV=0.020413;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,7:13,5:6,2
+chr2	2236812	.	TTC	T	0	PASS	DP=29;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:16:1,3:0,2:1,1
+chr2	3057938	.	G	GGTA	0	PASS	DP=38;GPV=1;SPV=0.11486;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:16,3:13,2:3,1
+chr2	5032952	.	A	C	0	PASS	DP=89;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:4,3:2,2:2,1
+chr2	5158655	.	A	G	0	PASS	DP=80;GPV=1;SPV=0.00011485;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:16,5:11,6
+chr2	6157462	.	CT	C	0	PASS	DP=53;GPV=1;SPV=0.021836;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:25,7:13,2:12,5
+chr2	6169264	.	TTC	T	0	PASS	DP=51;GPV=1;SPV=0.18558;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:11,1:19,3
+chr2	6376099	.	C	CTTT	0	PASS	DP=29;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,4:5,2:2,2
+chr2	7170701	.	CCTCT	C	0	PASS	DP=37;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,7:7,6:4,1
+chr2	7189371	.	GAA	G	0	PASS	DP=34;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:6,3:11,1
+chr2	7240623	.	T	C	0	PASS	DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,2:9,2
+chr2	7240625	.	T	C	0	PASS	DP=38;GPV=1;SPV=0.19804;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,5:8,2:10,3
+chr2	7924897	.	T	C	0	PASS	DP=82;GPV=1;SPV=6.2097e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,23:15,15:8,8
+chr2	8620963	.	T	TTGTG	0	PASS	DP=61;GPV=1;SPV=0.022211;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,11:13,5:13,6
+chr2	9125436	.	A	G	0	PASS	DP=36;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:5,3:6,2
+chr2	10916609	.	AT	A	0	PASS	DP=82;GPV=1;SPV=5.7203e-05;SS=2;SSC=42;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:29,13:14,8:15,5
+chr2	11035152	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.0052761;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:7,8:4,2
+chr2	11090929	.	T	TA	0	PASS	DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:10,3:9,1
+chr2	13841761	.	T	C	0	PASS	DP=81;GPV=1;SPV=3.2056e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:10,10:17,3
+chr2	15098024	.	AAT	A	0	PASS	DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:2,3:3,5
+chr2	15648603	.	GA	G	0	PASS	DP=39;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:10,8:2,1
+chr2	16787052	.	C	G	0	PASS	DP=82;GPV=1;SPV=1.5724e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:27,20:18,7:9,13
+chr2	16787478	.	C	T	0	PASS	DP=77;GPV=1;SPV=1.218e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,16:12,7:14,9
+chr2	17129427	.	T	TAAA	0	PASS	DP=29;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:4,9:1,6:3,3
+chr2	17477942	.	A	AAAG	0	PASS	DP=41;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:10,2:5,2
+chr2	22238326	.	TTATATA	T	0	PASS	DP=42;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,7:2,5:5,2
+chr2	22415345	.	G	A	0	PASS	DP=102;GPV=1;SPV=4.619e-10;SS=2;SSC=93;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:25,24:18,15:7,9
+chr2	22654476	.	G	T	0	PASS	DP=99;GPV=1;SPV=4.3081e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:38,20:16,8:22,12
+chr2	22918431	.	T	C	0	PASS	DP=88;GPV=1;SPV=1.6127e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:15,7:16,8
+chr2	23074655	.	C	T	0	PASS	DP=89;GPV=1;SPV=0.0001575;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:16,5:16,6
+chr2	23203690	.	CAA	C	0	PASS	DP=65;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,4:15,2:4,2
+chr2	23711346	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,3:3,1:0,2
+chr2	23839131	.	A	T	0	PASS	DP=77;GPV=1;SPV=1.3992e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:27,17:18,7:9,10
+chr2	24331068	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:4,4:9,2
+chr2	24642037	.	T	TGTGTGTGCGC	0	PASS	DP=73;GPV=1;SPV=0.0072439;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,10:10,5:13,5
+chr2	25193025	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.048408;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:8,2:16,7
+chr2	25526390	.	TATA	T	0	PASS	DP=42;GPV=1;SPV=0.0019379;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,10:5,5:3,5
+chr2	25963673	.	A	T	0	PASS	DP=59;GPV=1;SPV=0.036457;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:16,7:9,2:7,5
+chr2	26892756	.	T	TGAGAGAGA	0	PASS	DP=50;GPV=1;SPV=0.04277;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:16,3:10,4
+chr2	27539957	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,6:10,5:3,1
+chr2	27699820	.	A	G	0	PASS	DP=24;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:1,3:1,2:0,1
+chr2	30989659	.	TATATATATTAGTATATATAAAAA	T	0	PASS	DP=30;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,3:4,1
+chr2	32019835	.	A	T	0	PASS	DP=66;GPV=1;SPV=0.27198;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:8,4:5,2:3,2
+chr2	32157941	.	CAA	C	0	PASS	DP=36;GPV=1;SPV=0.0091441;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:4,2:3,5
+chr2	32762276	.	AGTGTGTGTGTGT	A	0	PASS	DP=39;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,8:4,3:3,5
+chr2	33227799	.	CTT	C	0	PASS	DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,5:7,4:2,1
+chr2	34144808	.	C	T	0	PASS	DP=73;GPV=1;SPV=5.02e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,17:11,6:12,11
+chr2	35144715	.	A	G	0	PASS	DP=88;GPV=1;SPV=1.9834e-09;SS=2;SSC=87;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,19:11,12:7,7
+chr2	35418817	.	T	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:3,1:4,1
+chr2	35496703	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:24,4:15,1:9,3
+chr2	43012620	.	ATTTTTTTTTT	A	0	PASS	DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,3:2,1
+chr2	43775854	.	A	ATT	0	PASS	DP=37;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:3,3:8,1
+chr2	43904701	.	C	A	0	PASS	DP=54;GPV=1;SPV=0.045519;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,5:8,3:4,2
+chr2	44066335	.	A	ATT	0	PASS	DP=95;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,4:11,3:12,1
+chr2	44354474	.	T	A	0	PASS	DP=97;GPV=1;SPV=1.2502e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:30,16:16,8:14,8
+chr2	44805528	.	G	GC	0	PASS	DP=95;GPV=1;SPV=4.6364e-06;SS=2;SSC=53;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:14,7:17,8
+chr2	45414714	.	GTATA	G	0	PASS	DP=76;GPV=1;SPV=0.060943;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:42,6:27,3:15,3
+chr2	45418677	.	A	T	0	PASS	DP=67;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:29:1,4:1,2:0,2
+chr2	45877089	.	A	G	0	PASS	DP=79;GPV=1;SPV=0.25496;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:27,4:17,1:10,3
+chr2	46004180	.	C	G	0	PASS	DP=95;GPV=1;SPV=5.3433e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:12,2:12,9
+chr2	46607781	.	G	A	0	PASS	DP=84;GPV=1;SPV=3.2598e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,23:17,14:6,9
+chr2	46944430	.	A	G	0	PASS	DP=60;GPV=1;SPV=0.0001796;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:9,6:12,7
+chr2	47900609	.	C	CACACGT	0	PASS	DP=26;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,5:1,3:8,2
+chr2	48059603	.	A	ATTTT	0	PASS	DP=41;GPV=1;SPV=0.026073;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,5:7,3:5,2
+chr2	50026859	.	CTTTTTTTTTTTTTTTTTTT	C	0	PASS	DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,3:3,2
+chr2	50606606	.	C	CAATAATAATAATAAT	0	PASS	DP=65;GPV=1;SPV=0.035226;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:32,11:18,7:14,4
+chr2	51966739	.	G	A	0	PASS	DP=64;GPV=1;SPV=2.5197e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,18:12,8:6,10
+chr2	54087912	.	A	T	0	PASS	DP=79;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:34:0,3:0,1:0,2
+chr2	54753664	.	T	G	0	PASS	DP=64;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:6,2:2,1:4,1
+chr2	56922408	.	G	T	0	PASS	DP=74;GPV=1;SPV=0.032909;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:37,6:21,3:16,3
+chr2	57529639	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.0024898;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:30,9:17,6:13,3
+chr2	60435528	.	C	CT	0	PASS	DP=37;GPV=1;SPV=0.03378;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,3:5,3
+chr2	61417735	.	TTTTCTTTTC	T	0	PASS	DP=49;GPV=1;SPV=0.022116;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:7,6:8,2
+chr2	61933771	.	TC	T	0	PASS	DP=69;GPV=1;SPV=0.10571;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:20,2:16,2
+chr2	61963159	.	C	CA	0	PASS	DP=79;GPV=1;SPV=0.0053061;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:16,6:16,1
+chr2	61975118	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:1,1:4,3
+chr2	62315376	.	C	CAAA	0	PASS	DP=39;GPV=1;SPV=0.017292;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,7:4,6:10,1
+chr2	63909413	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,6:2,4:4,2
+chr2	64170709	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.0041611;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,7:5,1
+chr2	66091570	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.01699;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:21,5:9,5
+chr2	67461581	.	ATATATATATGTGTG	A	0	PASS	DP=50;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,4:5,1:8,3
+chr2	68413223	.	T	G	0	PASS	DP=22;GPV=1;SPV=0.0067079;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,7:1,5:2,2
+chr2	69651830	.	C	G	0	PASS	DP=42;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:22:0,3:0,3:0,0
+chr2	70917151	.	C	CAA	0	PASS	DP=49;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:8,8:3,7:5,1
+chr2	73630958	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.038305;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:45,6:25,2:20,4
+chr2	73871565	.	T	A	0	PASS	DP=50;GPV=1;SPV=0.20158;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:13,5:2,3:11,2
+chr2	74742473	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.02121;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:11,7:3,2
+chr2	75251101	.	AGG	A	0	PASS	DP=40;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:5,5:2,2:3,3
+chr2	75905250	.	T	G	0	PASS	DP=59;GPV=1;SPV=2.4155e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,12:4,7:8,5
+chr2	76692291	.	T	A	0	PASS	DP=89;GPV=1;SPV=0.00012116;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:23,7:10,5
+chr2	76913543	.	A	ATTTTTTTTTTTTTT	0	PASS	DP=42;GPV=1;SPV=0.32176;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,4:16,3:9,1
+chr2	77103647	.	G	GTATATA	0	PASS	DP=56;GPV=1;SPV=0.013236;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:18,8:8,7:10,1
+chr2	77479101	.	G	T	0	PASS	DP=89;GPV=1;SPV=0.011919;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:47,9:19,3:28,6
+chr2	77686348	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.011394;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:6,1:8,6
+chr2	77931828	.	G	A	0	PASS	DP=81;GPV=1;SPV=1.3654e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:21,18:15,9:6,9
+chr2	78549115	.	C	A	0	PASS	DP=71;GPV=1;SPV=0.0006295;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:30,13:16,8:14,5
+chr2	79845172	.	CTT	C	0	PASS	DP=41;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,7:5,5:2,2
+chr2	80057175	.	G	GT	0	PASS	DP=61;GPV=1;SPV=0.0061655;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:15,6:11,2
+chr2	80589903	.	T	TGTGTGTGC	0	PASS	DP=63;GPV=1;SPV=0.031686;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,9:10,5:8,4
+chr2	80641753	.	C	T	0	PASS	DP=79;GPV=1;SPV=1.0312e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,16:8,5:14,11
+chr2	80984528	.	T	C	0	PASS	DP=84;GPV=1;SPV=4.3937e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:23,22:16,13:7,9
+chr2	81700693	.	T	A	0	PASS	DP=99;GPV=1;SPV=9.7046e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:26,7:17,9
+chr2	81701068	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:12,14:4,11:8,3
+chr2	81720931	.	A	T	0	PASS	DP=82;GPV=1;SPV=1.7347e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:32,21:10,8:22,13
+chr2	82109248	.	C	CTT	0	PASS	DP=28;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:9,3:3,2
+chr2	82135167	.	T	G	0	PASS	DP=19;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:0,8:0,1:0,7
+chr2	82176577	.	G	C	0	PASS	DP=68;GPV=1;SPV=0.00031835;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:10,4:13,6
+chr2	82468469	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.20188;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:26,4:21,2:5,2
+chr2	83232224	.	G	GTATATATATA	0	PASS	DP=26;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,4:4,3:2,1
+chr2	83429897	.	C	T	0	PASS	DP=82;GPV=1;SPV=2.5223e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:24,15:11,8:13,7
+chr2	84276435	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.26374;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:7,5:4,4:3,1
+chr2	85425230	.	C	A	0	PASS	DP=67;GPV=1;SPV=9.8808e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:12,7:12,7
+chr2	86569318	.	A	AT	0	PASS	DP=27;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,4:5,1:3,3
+chr2	87107818	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.023702;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:8,5:9,4
+chr2	87192569	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.041892;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:8,1:13,6
+chr2	87228717	.	T	A	0	PASS	DP=94;GPV=1;SPV=0.026424;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:47,15:24,4:23,11
+chr2	87361097	.	A	T	0	PASS	DP=217;GPV=1;SPV=0.025783;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:116:101,14:63,12:38,2
+chr2	87361322	.	T	C	0	PASS	DP=128;GPV=1;SPV=0.027614;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:56,12:17,5:39,7
+chr2	87378763	.	C	G	0	PASS	DP=56;GPV=1;SPV=0.098694;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:20,4:11,1
+chr2	87424878	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.0018749;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,11:11,7:8,4
+chr2	87884055	.	G	A	0	PASS	DP=99;GPV=1;SPV=0.029613;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:38,12:13,6:25,6
+chr2	87885399	.	C	A	0	PASS	DP=88;GPV=1;SPV=0.011249;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:37,6:20,3:17,3
+chr2	89534390	.	A	G	0	PASS	DP=73;GPV=1;SPV=0.020062;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:11,7:14,1
+chr2	90263274	.	T	A	0	PASS	DP=60;GPV=1;SPV=0.010783;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:5,1:19,9
+chr2	90317559	.	AG	A	0	PASS	DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:4,3:14,1
+chr2	90327067	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.020644;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,1:7,8
+chr2	90356868	.	AGCATT	A	0	PASS	DP=174;GPV=1;SPV=0.038484;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:46,7:34,6:12,1
+chr2	91467591	.	T	C	0	PASS	DP=177;GPV=1;SPV=0.0058698;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:78,12:28,3:50,9
+chr2	91473716	.	G	C	0	PASS	DP=315;GPV=1;SPV=0.044973;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:164:140,24:68,13:72,11
+chr2	91475304	.	C	T	0	PASS	DP=121;GPV=1;SPV=0.036902;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:51,15:23,2:28,13
+chr2	91512064	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.093588;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:0,0:26,4
+chr2	91590867	.	A	C	0	PASS	DP=121;GPV=1;SPV=0.032901;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:47,13:18,7:29,6
+chr2	92109426	.	G	C	0	PASS	DP=214;GPV=1;SPV=0.02189;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:101,17:47,8:54,9
+chr2	92244933	.	A	C	0	PASS	DP=265;GPV=1;SPV=0.0031124;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:144:121,23:45,11:76,12
+chr2	92300353	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:5,2:15,2
+chr2	92308722	.	A	G	0	PASS	DP=104;GPV=1;SPV=0.035968;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:33,7:17,1
+chr2	92317187	.	G	A	0	PASS	DP=148;GPV=1;SPV=0.036464;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:57,7:48,2:9,5
+chr2	92384123	.	T	G	0	PASS	DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:14,2:1,2
+chr2	92401141	.	T	A	0	PASS	DP=193;GPV=1;SPV=0.0017431;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:87:77,10:4,2:73,8
+chr2	92403422	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:1,0:29,4
+chr2	92417092	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.0066147;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:30,13:6,10:24,3
+chr2	92551166	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:7,1:17,3
+chr2	92557382	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:20,4:2,0
+chr2	92637920	.	C	T	0	PASS	DP=417;GPV=1;SPV=0.017433;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:228:202,23:122,13:80,10
+chr2	92641309	.	C	A	0	PASS	DP=195;GPV=1;SPV=0.00067309;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:85,16:30,7:55,9
+chr2	92815545	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:1,0:19,4
+chr2	92815587	.	T	A	0	PASS	DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:1,0:24,4
+chr2	92817406	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.050318;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:7,3:19,3
+chr2	92839007	.	G	T	0	PASS	DP=209;GPV=1;SPV=0.0022779;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:82,24:51,12:31,12
+chr2	92956270	.	T	C	0	PASS	DP=100;GPV=1;SPV=0.037798;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:53,6:50,5:3,1
+chr2	93026762	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.15427;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,3:6,2:14,1
+chr2	93044283	.	T	A	0	PASS	DP=68;GPV=1;SPV=0.045335;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:6,2:22,7
+chr2	93107130	.	G	A	0	PASS	DP=72;GPV=1;SPV=0.035875;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:7,2:26,3
+chr2	93158796	.	T	G	0	PASS	DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:2,0:25,4
+chr2	93179369	.	G	C	0	PASS	DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:5,1:16,3
+chr2	93219004	.	T	C	0	PASS	DP=231;GPV=1;SPV=0.019646;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:108,19:36,8:72,11
+chr2	93259672	.	G	C	0	PASS	DP=71;GPV=1;SPV=0.0097246;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:11,4:15,4
+chr2	93311255	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:4,1:3,1
+chr2	93346162	.	T	G	0	PASS	DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:8,5:1,1
+chr2	93454506	.	A	G	0	PASS	DP=30;GPV=1;SPV=0.13793;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:13,3:3,2:10,1
+chr2	93465530	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.28079;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:17,3:11,2:6,1
+chr2	93653271	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.0012238;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:14,8:1,5
+chr2	93753410	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:1,0:28,4
+chr2	93807122	.	G	T	0	PASS	DP=37;GPV=1;SPV=0.016795;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:2,2:9,5
+chr2	93889142	.	G	C	0	PASS	DP=50;GPV=1;SPV=0.064915;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:21,4:1,0
+chr2	93889691	.	T	A	0	PASS	DP=194;GPV=1;SPV=0.042961;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:79,10:35,6:44,4
+chr2	93962263	.	C	T	0	PASS	DP=133;GPV=1;SPV=0.038189;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:53,9:26,2:27,7
+chr2	94005337	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.0063358;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,6:22,4:1,2
+chr2	94155150	.	G	A	0	PASS	DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:20,4:0,0
+chr2	94156095	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.023677;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:21,5:14,8
+chr2	95650859	.	T	C	0	PASS	DP=97;GPV=1;SPV=0.0047322;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:15,7:21,7
+chr2	95858004	.	C	G	0	PASS	DP=98;GPV=1;SPV=0.019345;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:22,2:17,5
+chr2	97583326	.	A	T	0	PASS	DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:3,4:7,1
+chr2	98036209	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,2:8,2
+chr2	99867003	.	A	T	0	PASS	DP=52;GPV=1;SPV=0.021859;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:8,9:5,2:3,7
+chr2	103705075	.	A	T	0	PASS	DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:5,4:8,4
+chr2	105055493	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:5,6:0,1
+chr2	105211096	.	ACC	A	0	PASS	DP=49;GPV=1;SPV=0.16209;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:15,2:7,1
+chr2	105388668	.	C	CA	0	PASS	DP=66;GPV=1;SPV=0.043884;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:12,4:14,2
+chr2	106394427	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.010459;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:19,7:11,3:8,4
+chr2	106823442	.	A	AACACACACAC	0	PASS	DP=35;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,4:10,2:4,2
+chr2	106917333	.	C	CAAAA	0	PASS	DP=42;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,7:11,6:4,1
+chr2	110306649	.	CA	C	0	PASS	DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:4,3:1,1
+chr2	111369841	.	C	G	0	PASS	DP=107;GPV=1;SPV=0.00080463;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:53,14:29,4:24,10
+chr2	111369856	.	GCAGGCTGCA	G	0	PASS	DP=109;GPV=1;SPV=0.022382;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:57,11:32,3:25,8
+chr2	111387092	.	A	G	0	PASS	DP=70;GPV=1;SPV=0.03119;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:14,7:11,3
+chr2	111574482	.	C	T	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:1,1:5,1
+chr2	111642192	.	CAA	C	0	PASS	DP=38;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,6:10,5:7,1
+chr2	111978449	.	T	G	0	PASS	DP=80;GPV=1;SPV=0.0087027;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:24,9:10,5:14,4
+chr2	112047086	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:6,5:0,1
+chr2	113484023	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.0072523;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:6,3:18,6
+chr2	115985368	.	TC	T	0	PASS	DP=59;GPV=1;SPV=0.0036217;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,9:10,1:14,8
+chr2	116200289	.	G	A	0	PASS	DP=78;GPV=1;SPV=2.1439e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:9,5:13,10
+chr2	116976996	.	G	GTATATATATA	0	PASS	DP=42;GPV=1;SPV=0.0072004;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:6,5:7,4
+chr2	117074818	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.014116;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:34,8:18,5:16,3
+chr2	118695940	.	A	G	0	PASS	DP=23;GPV=1;SPV=0.02396;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:5,5:0,1
+chr2	120973017	.	C	T	0	PASS	DP=77;GPV=1;SPV=5.5881e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:30,17:11,9:19,8
+chr2	122335347	.	G	A	0	PASS	DP=84;GPV=1;SPV=4.4872e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:34,18:16,11:18,7
+chr2	123234970	.	A	AT	0	PASS	DP=17;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:1,1:3,1
+chr2	123356747	.	A	T	0	PASS	DP=21;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,2:1,1:3,1
+chr2	123414026	.	G	GAAGAAAGAAAGAAAGAAAGA	0	PASS	DP=35;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:4,2:4,2:0,0
+chr2	124419896	.	T	TTTTC	0	PASS	DP=73;GPV=1;SPV=0.035975;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:6,4:23,5
+chr2	125734514	.	T	C	0	PASS	DP=22;GPV=1;SPV=0.037112;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,7:4,1:0,6
+chr2	125776549	.	A	ATTTATTTATTTATTTG	0	PASS	DP=67;GPV=1;SPV=0.029853;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:16,9:11,1
+chr2	127252159	.	C	CA	0	PASS	DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:8,5:4,1
+chr2	128816521	.	ATATATAATATG	A	0	PASS	DP=47;GPV=1;SPV=0.083396;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,6:10,3:10,3
+chr2	129272202	.	A	C	0	PASS	DP=61;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:2,2:1,1:1,1
+chr2	130031192	.	G	T	0	PASS	DP=75;GPV=1;SPV=0.00021386;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:14,7:14,5
+chr2	131270314	.	G	A	0	PASS	DP=88;GPV=1;SPV=0.0091489;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:19,6:17,3
+chr2	131318005	.	C	T	0	PASS	DP=85;GPV=1;SPV=5.7314e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:26,19:16,9:10,10
+chr2	131357474	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.022225;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:13,6:8,3
+chr2	131945583	.	A	G	0	PASS	DP=104;GPV=1;SPV=0.037818;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:48,10:34,8:14,2
+chr2	132016825	.	TACA	T	0	PASS	DP=368;GPV=1;SPV=0.023337;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:199:165,34:84,24:81,10
+chr2	132404802	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,4:2,2:13,2
+chr2	132514068	.	G	A	0	PASS	DP=72;GPV=1;SPV=8.1043e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:14,11:8,4
+chr2	133177183	.	T	TATATATATAC	0	PASS	DP=55;GPV=1;SPV=0.13357;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,4:11,3:11,1
+chr2	134869706	.	G	GTA	0	PASS	DP=50;GPV=1;SPV=0.015231;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:9,6:6,3
+chr2	135619021	.	C	CAA	0	PASS	DP=61;GPV=1;SPV=0.026092;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,7:9,6:12,1
+chr2	135975753	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.0044346;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,9:10,8:2,1
+chr2	136760923	.	A	G	0	PASS	DP=82;GPV=1;SPV=4.0612e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,19:11,5:13,14
+chr2	139139937	.	C	CAAAA	0	PASS	DP=49;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,5:5,4:8,1
+chr2	140228200	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,5:13,1:5,4
+chr2	140228202	.	A	T	0	PASS	DP=45;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,5:14,1:4,4
+chr2	140228204	.	T	TATATATTC	0	PASS	DP=45;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,4:13,1:5,3
+chr2	140228419	.	AATAT	A	0	PASS	DP=53;GPV=1;SPV=0.013346;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:11,10:8,3
+chr2	142111478	.	A	C	0	PASS	DP=88;GPV=1;SPV=1.889e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:29,18:15,7:14,11
+chr2	144394989	.	CT	C	0	PASS	DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:8,3:1,1
+chr2	144663035	.	GTTTATGAAGATGCAAAGTCACATGGCAAATTATCAATATTT	G	0	PASS	DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:4,4:6,3
+chr2	146287171	.	C	CT	0	PASS	DP=70;GPV=1;SPV=2.4395e-06;SS=2;SSC=56;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:8,7:10,7
+chr2	146566577	.	G	A	0	PASS	DP=75;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:16,2:18,4
+chr2	147035532	.	GAAGAAAGAAAGAAAGAAAGA	G	0	PASS	DP=51;GPV=1;SPV=0.027191;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,6:8,5:1,1
+chr2	147611680	.	A	G	0	PASS	DP=86;GPV=1;SPV=6.7474e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:26,18:14,12:12,6
+chr2	148294505	.	T	G	0	PASS	DP=32;GPV=1;SPV=0.1114;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:11,2:6,4
+chr2	150205885	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,5:7,4:6,1
+chr2	151133461	.	AGAAAGAAG	A	0	PASS	DP=48;GPV=1;SPV=0.13357;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,4:15,2:7,2
+chr2	152719764	.	A	C	0	PASS	DP=68;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:14,2:18,2
+chr2	152923482	.	A	ATTTT	0	PASS	DP=18;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:3,1:2,3
+chr2	153089504	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.0039417;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:41,9:16,4:25,5
+chr2	154939176	.	A	ATATATT	0	PASS	DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:5,1:1,3
+chr2	154939185	.	T	A	0	PASS	DP=29;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,5:4,1:2,4
+chr2	155754615	.	T	TAAATAAAATA	0	PASS	DP=78;GPV=1;SPV=0.0090863;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:29,16:13,10:16,6
+chr2	156352879	.	A	G	0	PASS	DP=89;GPV=1;SPV=0.035679;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,12:23,10:11,2
+chr2	157611849	.	G	T	0	PASS	DP=94;GPV=1;SPV=3.0975e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:33,18:15,5:18,13
+chr2	158000067	.	A	T	0	PASS	DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:24,3:10,1
+chr2	159324625	.	TAC	T	0	PASS	DP=36;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,5:8,2:5,3
+chr2	161660592	.	C	CT	0	PASS	DP=69;GPV=1;SPV=0.027649;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,7:3,5:20,2
+chr2	162558175	.	CT	C	0	PASS	DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:14,7:9,6
+chr2	162954239	.	G	A	0	PASS	DP=68;GPV=1;SPV=1.0094e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:18,17:7,11:11,6
+chr2	165923743	.	G	GTT	0	PASS	DP=50;GPV=1;SPV=0.01607;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:8,8:11,1
+chr2	166312986	.	AATT	A	0	PASS	DP=82;GPV=1;SPV=0.027465;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:18,1:18,4
+chr2	168867808	.	T	C	0	PASS	DP=93;GPV=1;SPV=0.014044;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:14,6:29,4
+chr2	168867850	.	A	G	0	PASS	DP=96;GPV=1;SPV=0.019385;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:16,9:24,4
+chr2	168975468	.	GATAAATAT	G	0	PASS	DP=88;GPV=1;SPV=0.023608;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:32,8:14,2:18,6
+chr2	169277193	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:5,10:3,9:2,1
+chr2	170519972	.	CA	C	0	PASS	DP=45;GPV=1;SPV=0.0083519;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:9,9:4,8:5,1
+chr2	170543495	.	C	T	0	PASS	DP=73;GPV=1;SPV=1.6518e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,14:10,6:13,8
+chr2	171081852	.	TTG	T	0	PASS	DP=86;GPV=1;SPV=3.8083e-07;SS=2;SSC=64;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:24,17:9,8:15,9
+chr2	171851511	.	G	A	0	PASS	DP=69;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,5:6,3:14,2
+chr2	172109645	.	C	G	0	PASS	DP=73;GPV=1;SPV=0.083965;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:16,1:20,3
+chr2	172568327	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.033264;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,6:8,5:5,1
+chr2	172914319	.	ATTT	A	0	PASS	DP=39;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:9,2:6,2
+chr2	173192079	.	A	G	0	PASS	DP=82;GPV=1;SPV=0.0062765;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:25,10:14,5:11,5
+chr2	174423777	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:8,1:6,3
+chr2	175313335	.	A	G	0	PASS	DP=92;GPV=1;SPV=0.0014181;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,11:22,6:20,5
+chr2	177592339	.	T	G	0	PASS	DP=90;GPV=1;SPV=2.8928e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:17,10:10,9
+chr2	177631599	.	A	ATG	0	PASS	DP=22;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:5,2:2,3
+chr2	180164419	.	C	CTGTGTGTGTGTG	0	PASS	DP=46;GPV=1;SPV=0.0025987;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,9:3,6:3,3
+chr2	180329767	.	C	A	0	PASS	DP=72;GPV=1;SPV=4.2691e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:13,3:8,8
+chr2	184134307	.	G	GTT	0	PASS	DP=97;GPV=1;SPV=0.012316;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:33,16:19,8:14,8
+chr2	185526322	.	G	A	0	PASS	DP=85;GPV=1;SPV=2.1162e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,16:15,9:11,7
+chr2	186851520	.	A	C	0	PASS	DP=50;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:6,2:3,1:3,1
+chr2	187406187	.	C	CAA	0	PASS	DP=59;GPV=1;SPV=0.01206;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:26,14:14,8:12,6
+chr2	190314330	.	T	TAC	0	PASS	DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,3:8,1
+chr2	190665678	.	C	G	0	PASS	DP=91;GPV=1;SPV=0.00013696;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:19,9:17,4
+chr2	192188507	.	T	A	0	PASS	DP=103;GPV=1;SPV=3.3802e-09;SS=2;SSC=84;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:31,29:12,11:19,18
+chr2	192682970	.	A	C	0	PASS	DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:12,3:17,1
+chr2	192682971	.	T	C	0	PASS	DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:11,3:17,1
+chr2	195740603	.	G	A	0	PASS	DP=29;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:9,1:3,3
+chr2	195848382	.	C	T	0	PASS	DP=94;GPV=1;SPV=8.9593e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:38,22:15,8:23,14
+chr2	197072046	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.0078247;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,9:4,2:3,7
+chr2	200522366	.	TTC	T	0	PASS	DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:8,1:17,3
+chr2	200683642	.	C	CCA	0	PASS	DP=54;GPV=1;SPV=0.065739;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:19,3:8,1:11,2
+chr2	201101362	.	C	CTT	0	PASS	DP=40;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:7,8:8,2
+chr2	201694608	.	C	CTT	0	PASS	DP=27;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,6:2,2:5,4
+chr2	202675445	.	C	CAAA	0	PASS	DP=31;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:3,4:2,1
+chr2	203482018	.	AC	A	0	PASS	DP=75;GPV=1;SPV=0.054338;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:19,3:14,1
+chr2	205730824	.	C	T	0	PASS	DP=79;GPV=1;SPV=1.9377e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,20:9,14:13,6
+chr2	206249562	.	ATT	A	0	PASS	DP=64;GPV=1;SPV=0.003241;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,12:12,10:8,2
+chr2	206315513	.	C	CA	0	PASS	DP=49;GPV=1;SPV=0.00039944;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:11,16:7,9:4,7
+chr2	208176963	.	A	ATC	0	PASS	DP=39;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,8:9,3:3,5
+chr2	208237764	.	C	CAA	0	PASS	DP=41;GPV=1;SPV=0.0093762;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,8:6,5:5,3
+chr2	208818593	.	CTGCT	C	0	PASS	DP=55;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:2,2:0,1:2,1
+chr2	209091906	.	GAT	G	0	PASS	DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,1:11,3
+chr2	209925100	.	T	G	0	PASS	DP=64;GPV=1;SPV=0.00029281;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:9,3:12,7
+chr2	210978778	.	C	CTTTT	0	PASS	DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:0,3:7,3
+chr2	211401493	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.0014707;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:16,5:9,3
+chr2	212204816	.	C	CTT	0	PASS	DP=29;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:11,4:3,2
+chr2	212510205	.	G	GTATATA	0	PASS	DP=26;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,4:4,3:1,1
+chr2	213980478	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.010483;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,8:9,3:14,5
+chr2	216031691	.	G	GAA	0	PASS	DP=37;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,4:12,2:1,2
+chr2	218684106	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,7:3,5:3,2
+chr2	219043934	.	C	T	0	PASS	DP=62;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:11,7:7,6:4,1
+chr2	219262643	.	G	A	0	PASS	DP=85;GPV=1;SPV=4.6565e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:24,23:13,14:11,9
+chr2	219822906	.	C	CTTTT	0	PASS	DP=33;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,10:1,5:3,5
+chr2	220013230	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.0093841;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:2,3:13,7
+chr2	220013251	.	C	CTT	0	PASS	DP=40;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:10,9:4,2:6,7
+chr2	220400875	.	G	GTT	0	PASS	DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:2,3:4,1
+chr2	223654163	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:11,3:3,1
+chr2	223789835	.	CA	C	0	PASS	DP=47;GPV=1;SPV=0.016427;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:10,9:5,1
+chr2	223866479	.	C	CTTCT	0	PASS	DP=45;GPV=1;SPV=0.007794;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,11:2,3:10,8
+chr2	224166291	.	C	G	0	PASS	DP=76;GPV=1;SPV=0.00017003;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:32,17:12,12:20,5
+chr2	225126009	.	CTTTTTTTT	C	0	PASS	DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,10:3,9:1,1
+chr2	225758347	.	CGTGGTGGCGGG	C	0	PASS	DP=62;GPV=1;SPV=0.00082087;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:18,8:6,3
+chr2	226041206	.	C	A	0	PASS	DP=93;GPV=1;SPV=0.0038251;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:13,3:30,6
+chr2	227730181	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.034157;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:28,2:9,9
+chr2	227745978	.	G	T	0	PASS	DP=58;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:28:0,2:0,1:0,1
+chr2	227762536	.	T	TCTTTC	0	PASS	DP=49;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:1,2:0,1:1,1
+chr2	228092463	.	TGTGCC	T	0	PASS	DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:7,1:5,4
+chr2	228271845	.	G	T	0	PASS	DP=84;GPV=1;SPV=4.2648e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,19:12,11:13,8
+chr2	228501735	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:3,3:6,7
+chr2	228505700	.	G	A	0	PASS	DP=82;GPV=1;SPV=2.6974e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:15,11:12,2
+chr2	228867416	.	C	CT	0	PASS	DP=74;GPV=1;SPV=0.0015605;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:18,7:13,3
+chr2	229762700	.	G	A	0	PASS	DP=92;GPV=1;SPV=2.7847e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:38,19:25,5:13,14
+chr2	229938845	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:17,2:12,2
+chr2	231692705	.	T	G	0	PASS	DP=63;GPV=1;SPV=0.019794;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:19,3:9,3
+chr2	231848489	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:8,4:9,1
+chr2	233321986	.	TACACACACACACACACACACAC	T	0	PASS	DP=38;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,11:3,9:3,2
+chr2	234297597	.	C	CCCTTTCTTTCTTTCTT	0	PASS	DP=54;GPV=1;SPV=0.020443;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:6,2:14,3
+chr2	235358886	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:3,2:1,1:2,1
+chr2	235746377	.	CTTTTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:2,6:5,1
+chr2	236416721	.	TTATA	T	0	PASS	DP=19;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,4:4,2:1,2
+chr2	236808656	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.00021594;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:30,12:12,6:18,6
+chr2	237578900	.	A	AAC	0	PASS	DP=65;GPV=1;SPV=0.001961;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:18,9:11,3
+chr2	239185034	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:4,2:4,2:0,0
+chr2	239253765	.	T	A	0	PASS	DP=79;GPV=1;SPV=1.6295e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,12:13,6:10,6
+chr2	240672171	.	G	A	0	PASS	DP=107;GPV=1;SPV=1.0492e-08;SS=2;SSC=79;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:33,25:21,12:12,13
+chr2	241392949	.	G	GA	0	PASS	DP=46;GPV=1;SPV=0.043687;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,14:4,9:15,5
+chr2	242169565	.	T	TG	0	PASS	DP=85;GPV=1;SPV=0.011252;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:17,3:20,7
+chr20	1421653	.	C	T	0	PASS	DP=82;GPV=1;SPV=0.00021937;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:17,8:17,6
+chr20	1668219	.	C	CTTTTTCTTTTCT	0	PASS	DP=55;GPV=1;SPV=0.31002;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,4:11,2:13,2
+chr20	2854238	.	T	TACACACACACACACACACACAC	0	PASS	DP=52;GPV=1;SPV=0.042868;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:8,3:7,3
+chr20	2910020	.	TCTATC	T	0	PASS	DP=45;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,4:7,1:13,3
+chr20	3597071	.	T	TATATATATATATATATATAA	0	PASS	DP=47;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,8:7,3:9,5
+chr20	3648606	.	C	T	0	PASS	DP=95;GPV=1;SPV=7.5915e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:29,22:13,7:16,15
+chr20	3724489	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:7,4:8,2
+chr20	3724490	.	A	G	0	PASS	DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:10,4:7,1
+chr20	4032934	.	C	T	0	PASS	DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:2,1:12,3
+chr20	4055300	.	C	CAAAA	0	PASS	DP=50;GPV=1;SPV=0.01279;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,8:13,7:1,1
+chr20	5213537	.	AGTGTGTGTGTGTGT	A	0	PASS	DP=35;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,11:0,9:6,2
+chr20	5266921	.	A	C	0	PASS	DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:19,3:10,1
+chr20	5266924	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:22,3:13,1
+chr20	5672704	.	ATTTTATT	A	0	PASS	DP=54;GPV=1;SPV=0.064915;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,4:7,3:15,1
+chr20	5959690	.	CT	C	0	PASS	DP=36;GPV=1;SPV=0.0023297;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:4,6:6,1
+chr20	6318106	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.084986;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:10,1:20,4
+chr20	7022334	.	CA	C	0	PASS	DP=75;GPV=1;SPV=0.10523;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:24,4:18,2:6,2
+chr20	10479355	.	T	TTTTC	0	PASS	DP=66;GPV=1;SPV=0.0055953;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:15,8:7,4
+chr20	11065849	.	A	G	0	PASS	DP=100;GPV=1;SPV=6.9242e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:38,18:16,5:22,13
+chr20	11507909	.	TATATACAC	T	0	PASS	DP=32;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:4,2:6,5
+chr20	12364160	.	G	A	0	PASS	DP=83;GPV=1;SPV=2.9635e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:16,9:13,5
+chr20	12755372	.	A	G	0	PASS	DP=50;GPV=1;SPV=0.018628;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:10,3:11,3
+chr20	13159970	.	CT	C	0	PASS	DP=86;GPV=1;SPV=0.033108;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:26,4:13,1
+chr20	13627733	.	T	TAAAAAAAAAAAA	0	PASS	DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:16,3:11,1
+chr20	13934341	.	T	TC	0	PASS	DP=68;GPV=1;SPV=0.052565;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,6:10,4:26,2
+chr20	14083122	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:3,2:2,1:1,1
+chr20	14190702	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:1,2:0,1:1,1
+chr20	16410036	.	C	CAT	0	PASS	DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,2:3,1:2,1
+chr20	16671238	.	A	C	0	PASS	DP=58;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:7,2:0,1:7,1
+chr20	17294499	.	T	G	0	PASS	DP=83;GPV=1;SPV=1.0237e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:12,8:13,5
+chr20	19844619	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.10103;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:5,2:23,3
+chr20	19984000	.	G	A	0	PASS	DP=47;GPV=1;SPV=0.043779;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:6,2:9,5
+chr20	21721607	.	CATAT	C	0	PASS	DP=29;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:6,6:4,1
+chr20	21748369	.	T	G	0	PASS	DP=72;GPV=1;SPV=0.0003586;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:8,3:13,5
+chr20	23526154	.	T	G	0	PASS	DP=67;GPV=1;SPV=6.589e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:12,7:8,4
+chr20	23683258	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.035082;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:15,3:25,2
+chr20	24508218	.	A	ATT	0	PASS	DP=25;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,6:5,5:2,1
+chr20	25388787	.	C	CTTT	0	PASS	DP=40;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,10:4,7:8,3
+chr20	25792739	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr20	26237768	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.03936;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:22,2:19,3
+chr20	26894806	.	C	A	0	PASS	DP=27;GPV=1;SPV=0.037198;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:6,1:4,4
+chr20	27057752	.	A	T	0	PASS	DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:0,0:9,4
+chr20	27213207	.	G	A	0	PASS	DP=196;GPV=1;SPV=9.5044e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:94,15:32,4:62,11
+chr20	27213245	.	T	C	0	PASS	DP=185;GPV=1;SPV=0.011213;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:84,16:33,3:51,13
+chr20	28531506	.	G	A	0	PASS	DP=540;GPV=1;SPV=0.031934;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:315:266,33:107,13:159,20
+chr20	28601114	.	C	T	0	PASS	DP=274;GPV=1;SPV=0.012392;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:133:106,27:39,3:67,24
+chr20	28624166	.	C	T	0	PASS	DP=444;GPV=1;SPV=0.022899;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:226:194,32:120,14:74,18
+chr20	28639014	.	A	C	0	PASS	DP=223;GPV=1;SPV=0.01847;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:89,18:36,7:53,11
+chr20	28839977	.	GT	G	0	PASS	DP=202;GPV=1;SPV=0.046076;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:92,18:35,7:57,11
+chr20	28889768	.	C	CCATTCCATTT	0	PASS	DP=147;GPV=1;SPV=0.0080696;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:66,10:32,6:34,4
+chr20	29091576	.	ATCAT	A	0	PASS	DP=371;GPV=1;SPV=0.02386;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:191:160,31:84,14:76,17
+chr20	29114498	.	C	T	0	PASS	DP=328;GPV=1;SPV=0.034198;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:165:139,26:63,13:76,13
+chr20	29124918	.	G	A	0	PASS	DP=378;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:205:169,36:94,19:75,17
+chr20	29504644	.	AAAATT	A	0	PASS	DP=71;GPV=1;SPV=0.0059872;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:17,3:16,6
+chr20	29515438	.	G	A	0	PASS	DP=119;GPV=1;SPV=0.006436;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:57,8:32,5:25,3
+chr20	29898556	.	G	A	0	PASS	DP=324;GPV=1;SPV=0.015448;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:174:150,24:77,17:73,7
+chr20	29920296	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:16,4:0,0
+chr20	29972768	.	T	A	0	PASS	DP=87;GPV=1;SPV=0.0032969;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:13,9:18,6
+chr20	30415770	.	A	T	0	PASS	DP=143;GPV=1;SPV=0.029803;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:67,10:32,2:35,8
+chr20	30864416	.	A	G	0	PASS	DP=224;GPV=1;SPV=0.030834;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:103,17:43,9:60,8
+chr20	30907965	.	ATTCT	A	0	PASS	DP=60;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,5:3,2:14,3
+chr20	31055102	.	C	T	0	PASS	DP=255;GPV=1;SPV=0.044983;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:120,18:58,11:62,7
+chr20	31070023	.	G	A	0	PASS	DP=131;GPV=1;SPV=0.0041726;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:43,16:26,10:17,6
+chr20	31070181	.	G	T	0	PASS	DP=149;GPV=1;SPV=0.0078692;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:56,15:29,7:27,8
+chr20	31090625	.	A	G	0	PASS	DP=41;GPV=1;SPV=0.012456;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:7,2:6,6
+chr20	31580080	.	A	AT	0	PASS	DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:4,4:8,4
+chr20	33699579	.	C	T	0	PASS	DP=33;GPV=1;SPV=0.025586;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,6:5,3
+chr20	33764545	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:6,4:0,1
+chr20	33793413	.	G	C	0	PASS	DP=97;GPV=1;SPV=0.00018052;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:25,6:15,7
+chr20	34305122	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.013828;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:21,5:7,4
+chr20	34385222	.	G	GTT	0	PASS	DP=27;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,4:5,2:3,2
+chr20	34584504	.	CT	C	0	PASS	DP=33;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:11,4:5,1
+chr20	37507861	.	G	GGTGTGTGT	0	PASS	DP=37;GPV=1;SPV=0.13094;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,7:7,6:7,1
+chr20	37603317	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:0,0:20,4
+chr20	37747378	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:12,3:5,1
+chr20	37965858	.	G	GTT	0	PASS	DP=37;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:8,3:9,2
+chr20	38020327	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:6,4:8,1
+chr20	38600200	.	CACCT	C	0	PASS	DP=78;GPV=1;SPV=0.064069;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:21,2:15,2
+chr20	41689410	.	G	A	0	PASS	DP=75;GPV=1;SPV=1.7194e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:22,17:11,6:11,11
+chr20	43176217	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:9,2:1,3
+chr20	43668194	.	CTTT	C	0	PASS	DP=35;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,6:6,5:5,1
+chr20	44745427	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.01087;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:5,4:1,1
+chr20	45369596	.	CTTTTTT	C	0	PASS	DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:5,5:4,2
+chr20	45742354	.	C	CTG	0	PASS	DP=42;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:7,6:7,2
+chr20	45863169	.	G	GT	0	PASS	DP=88;GPV=1;SPV=0.031655;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:17,1:17,3
+chr20	46124751	.	GTTTTT	G	0	PASS	DP=36;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,6:11,3:6,3
+chr20	46163323	.	A	C	0	PASS	DP=91;GPV=1;SPV=5.7714e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:31,16:15,8:16,8
+chr20	46273335	.	G	C	0	PASS	DP=98;GPV=1;SPV=3.1409e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:35,18:20,10:15,8
+chr20	47890440	.	C	A	0	PASS	DP=75;GPV=1;SPV=0.060943;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:42,6:21,4:21,2
+chr20	48220906	.	C	CA	0	PASS	DP=34;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:10,14:5,12:5,2
+chr20	48222211	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:20,2:2,2
+chr20	48505407	.	C	A	0	PASS	DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:9,3:17,1
+chr20	48933905	.	G	A	0	PASS	DP=98;GPV=1;SPV=1.2638e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:36,22:23,11:13,11
+chr20	49129280	.	A	ATT	0	PASS	DP=33;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:8,1:4,3
+chr20	52314969	.	CTCTCTCTCTCTCTG	C	0	PASS	DP=31;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:0,3:0,1:0,2
+chr20	52383847	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:1,2:1,2:0,0
+chr20	52900213	.	T	TTTTCTTTC	0	PASS	DP=66;GPV=1;SPV=0.040748;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,7:14,2:12,5
+chr20	53845411	.	G	GTTTTTT	0	PASS	DP=28;GPV=1;SPV=0.011401;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:6,5:0,2
+chr20	54842880	.	A	T	0	PASS	DP=71;GPV=1;SPV=0.040883;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,6:10,1:15,5
+chr20	55314528	.	CA	C	0	PASS	DP=71;GPV=1;SPV=0.0077416;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:15,2:15,5
+chr20	55514525	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.10265;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:17,4:13,1
+chr20	55514526	.	A	T	0	PASS	DP=59;GPV=1;SPV=0.064844;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:17,4:13,1
+chr20	57669142	.	C	CATTTATTTATTTATTT	0	PASS	DP=59;GPV=1;SPV=0.076076;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,6:20,4:12,2
+chr20	58473712	.	G	C	0	PASS	DP=81;GPV=1;SPV=0.00069954;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:23,6:13,7
+chr20	58660713	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:0,1:2,3
+chr20	58979628	.	A	AC	0	PASS	DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:22,2:2,3
+chr20	60507281	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,4:9,1:9,3
+chr20	62341039	.	AAAATAAATAAATAAAT	A	0	PASS	DP=52;GPV=1;SPV=0.025865;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,9:17,3:4,6
+chr20	63068602	.	C	G	0	PASS	DP=113;GPV=1;SPV=0.031417;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:57,9:36,1:21,8
+chr20	64195401	.	C	CTTTTTT	0	PASS	DP=23;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,5:0,3:4,2
+chr21	5220172	.	T	G	0	PASS	DP=419;GPV=1;SPV=0.01533;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:210:179,31:89,18:90,13
+chr21	5232760	.	G	A	0	PASS	DP=303;GPV=1;SPV=0.011403;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:154:133,21:69,13:64,8
+chr21	5270148	.	A	G	0	PASS	DP=100;GPV=1;SPV=0.01767;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:43,14:21,6:22,8
+chr21	6361949	.	C	T	0	PASS	DP=490;GPV=1;SPV=0.0088782;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:275:247,28:118,14:129,14
+chr21	7218911	.	T	C	0	PASS	DP=54;GPV=1;SPV=0.040797;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:21,7:4,3
+chr21	7246044	.	G	A	0	PASS	DP=264;GPV=1;SPV=0.038198;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:147:131,16:73,9:58,7
+chr21	7252722	.	C	A	0	PASS	DP=113;GPV=1;SPV=0.010036;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:50,16:35,11:15,5
+chr21	7281326	.	T	C	0	PASS	DP=195;GPV=1;SPV=0.040746;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:98,15:48,11:50,4
+chr21	7315101	.	A	G	0	PASS	DP=175;GPV=1;SPV=0.031233;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:74,20:39,7:35,13
+chr21	7318116	.	T	C	0	PASS	DP=194;GPV=1;SPV=0.028389;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:85,21:48,11:37,10
+chr21	7916759	.	A	G	0	PASS	DP=203;GPV=1;SPV=0.015515;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:119:95,24:51,14:44,10
+chr21	7928708	.	TC	T	0	PASS	DP=199;GPV=1;SPV=0.02013;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:113:93,20:45,10:48,10
+chr21	7942110	.	C	T	0	PASS	DP=226;GPV=1;SPV=7.5651e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:104,14:52,3:52,11
+chr21	7946994	.	C	G	0	PASS	DP=237;GPV=1;SPV=0.011018;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:91,23:49,10:42,13
+chr21	7947020	.	C	T	0	PASS	DP=235;GPV=1;SPV=0.018736;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:96,22:48,11:48,11
+chr21	7948925	.	C	T	0	PASS	DP=256;GPV=1;SPV=0.016707;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:140:114,26:62,20:52,6
+chr21	7950849	.	TC	T	0	PASS	DP=207;GPV=1;SPV=0.0099971;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:80,23:41,11:39,12
+chr21	7950853	.	TTCCA	T	0	PASS	DP=171;GPV=1;SPV=0.0099623;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:65,20:39,9:26,11
+chr21	7957223	.	T	A	0	PASS	DP=141;GPV=1;SPV=0.038297;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:36,12:14,5:22,7
+chr21	7958453	.	C	T	0	PASS	DP=444;GPV=1;SPV=0.014015;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:256:217,39:120,22:97,17
+chr21	8021953	.	C	T	0	PASS	DP=168;GPV=1;SPV=0.010888;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:72,23:59,11:13,12
+chr21	8033537	.	A	T	0	PASS	DP=55;GPV=1;SPV=0.022245;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:7,2:13,5
+chr21	8036516	.	G	T	0	PASS	DP=88;GPV=1;SPV=0.016292;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:35,10:23,1:12,9
+chr21	8575932	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:0,0:23,4
+chr21	8615202	.	G	A	0	PASS	DP=175;GPV=1;SPV=0.018379;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:89:71,18:40,9:31,9
+chr21	8766338	.	C	T	0	PASS	DP=421;GPV=1;SPV=0.01124;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:204:175,29:73,13:102,16
+chr21	8766772	.	C	A	0	PASS	DP=149;GPV=1;SPV=0.00013834;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:62,12:47,5:15,7
+chr21	8783934	.	G	T	0	PASS	DP=380;GPV=1;SPV=0.0071481;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:197:174,23:68,9:106,14
+chr21	8786423	.	TTCC	T	0	PASS	DP=259;GPV=1;SPV=0.037144;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:141:118,21:70,9:48,12
+chr21	8827093	.	T	G	0	PASS	DP=162;GPV=1;SPV=0.041463;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:88,16:54,12:34,4
+chr21	8837938	.	G	A	0	PASS	DP=422;GPV=1;SPV=0.048908;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:240:215,25:139,19:76,6
+chr21	8840952	.	G	A	0	PASS	DP=392;GPV=1;SPV=0.035916;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:197:166,31:66,8:100,23
+chr21	8845647	.	A	T	0	PASS	DP=63;GPV=1;SPV=0.035906;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:13,7:8,2
+chr21	8850770	.	G	C	0	PASS	DP=126;GPV=1;SPV=0.039474;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:53,12:10,2:43,10
+chr21	8858565	.	G	C	0	PASS	DP=554;GPV=1;SPV=0.006701;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:300:263,37:162,24:101,13
+chr21	8861884	.	T	C	0	PASS	DP=317;GPV=1;SPV=0.01295;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:175:151,24:49,15:102,9
+chr21	8881102	.	AC	A	0	PASS	DP=367;GPV=1;SPV=0.0046877;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:195:170,25:118,17:52,8
+chr21	9000317	.	A	T	0	PASS	DP=382;GPV=1;SPV=0.022287;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:202:178,24:94,15:84,9
+chr21	9000360	.	C	T	0	PASS	DP=451;GPV=1;SPV=0.036817;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:256:225,31:121,17:104,14
+chr21	9000802	.	C	A	0	PASS	DP=384;GPV=1;SPV=0.025601;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:198:174,24:91,8:83,16
+chr21	9000994	.	CTGGGAAAACTGGCT	C	0	PASS	DP=371;GPV=1;SPV=0.0061423;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:197:171,26:75,6:96,20
+chr21	9001046	.	A	G	0	PASS	DP=364;GPV=1;SPV=0.033603;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:196:174,22:73,4:101,18
+chr21	9011684	.	C	T	0	PASS	DP=484;GPV=1;SPV=0.033479;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:252:224,28:120,17:104,11
+chr21	9011923	.	C	T	0	PASS	DP=411;GPV=1;SPV=0.0084415;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:207:181,26:82,13:99,13
+chr21	9019913	.	C	T	0	PASS	DP=407;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:210:186,24:90,11:96,13
+chr21	9033212	.	G	A	0	PASS	DP=434;GPV=1;SPV=0.0085647;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:227:204,23:102,15:102,8
+chr21	9043378	.	G	A	0	PASS	DP=498;GPV=1;SPV=0.0059937;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:253:217,36:106,20:111,16
+chr21	9084596	.	G	GTGTGTGTGTGTGTT	0	PASS	DP=199;GPV=1;SPV=0.028334;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:68,17:20,6:48,11
+chr21	9092235	.	A	C	0	PASS	DP=461;GPV=1;SPV=0.025641;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:225:198,27:89,7:109,20
+chr21	9096011	.	T	C	0	PASS	DP=241;GPV=1;SPV=0.0057924;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:107,23:53,11:54,12
+chr21	9102967	.	T	C	0	PASS	DP=480;GPV=1;SPV=0.027549;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:229:202,27:120,21:82,6
+chr21	9124467	.	G	T	0	PASS	DP=625;GPV=1;SPV=0.049959;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:304:272,32:153,18:119,14
+chr21	9136435	.	G	A	0	PASS	DP=491;GPV=1;SPV=0.011234;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:245:220,25:127,16:93,9
+chr21	9154575	.	C	T	0	PASS	DP=678;GPV=1;SPV=0.019822;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:360:316,44:153,19:163,25
+chr21	9157822	.	C	G	0	PASS	DP=409;GPV=1;SPV=0.01118;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:198:177,21:100,15:77,6
+chr21	9177607	.	A	G	0	PASS	DP=493;GPV=1;SPV=0.0076654;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:230:197,33:89,16:108,17
+chr21	9184712	.	C	A	0	PASS	DP=446;GPV=1;SPV=0.027931;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:246:219,27:107,13:112,14
+chr21	9253945	.	T	G	0	PASS	DP=709;GPV=1;SPV=0.028605;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:394:352,42:122,21:230,21
+chr21	9268439	.	C	A	0	PASS	DP=593;GPV=1;SPV=0.027544;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:318:269,49:123,29:146,20
+chr21	9270905	.	T	A	0	PASS	DP=382;GPV=1;SPV=0.021248;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:190:163,27:59,14:104,13
+chr21	9272226	.	C	G	0	PASS	DP=316;GPV=1;SPV=0.0044996;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:158:137,21:57,3:80,18
+chr21	9272460	.	A	G	0	PASS	DP=265;GPV=1;SPV=0.046025;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:148:124,24:64,4:60,20
+chr21	9309037	.	G	A	0	PASS	DP=496;GPV=1;SPV=0.04638;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:266:239,27:124,16:115,11
+chr21	9317266	.	A	T	0	PASS	DP=466;GPV=1;SPV=0.010295;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:245:219,26:131,19:88,7
+chr21	9323107	.	G	A	0	PASS	DP=648;GPV=1;SPV=0.014018;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:341:291,50:139,33:152,17
+chr21	9324423	.	G	A	0	PASS	DP=496;GPV=1;SPV=0.01913;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:267:240,27:152,19:88,8
+chr21	9334862	.	C	T	0	PASS	DP=469;GPV=1;SPV=0.026473;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:228:205,23:88,7:117,16
+chr21	9347264	.	G	T	0	PASS	DP=523;GPV=1;SPV=0.0085766;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:285:250,35:119,17:131,18
+chr21	9351081	.	C	A	0	PASS	DP=508;GPV=1;SPV=0.016554;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:292:259,33:144,16:115,17
+chr21	9357060	.	T	A	0	PASS	DP=531;GPV=1;SPV=0.012241;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:278:248,30:134,16:114,14
+chr21	9367890	.	C	T	0	PASS	DP=713;GPV=1;SPV=0.024546;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:355:309,42:137,14:172,28
+chr21	9369275	.	G	A	0	PASS	DP=918;GPV=1;SPV=0.031693;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:495:440,55:201,22:239,33
+chr21	9373504	.	G	GAGAT	0	PASS	DP=473;GPV=1;SPV=0.048323;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:262:235,27:109,4:126,23
+chr21	9564852	.	A	T	0	PASS	DP=201;GPV=1;SPV=0.0036247;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:75,23:35,13:40,10
+chr21	9574243	.	C	A	0	PASS	DP=205;GPV=1;SPV=0.0017606;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:75,20:41,14:34,6
+chr21	9576700	.	G	A	0	PASS	DP=286;GPV=1;SPV=0.014616;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:152:135,17:66,8:69,9
+chr21	9581253	.	T	C	0	PASS	DP=116;GPV=1;SPV=0.044808;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:54,7:30,5:24,2
+chr21	9591067	.	A	ATAGACACAAGGTTTCACTATAT	0	PASS	DP=115;GPV=1;SPV=0.038826;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:47,8:20,5:27,3
+chr21	9606696	.	A	G	0	PASS	DP=195;GPV=1;SPV=0.015765;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:84,20:40,9:44,11
+chr21	9673062	.	T	C	0	PASS	DP=185;GPV=1;SPV=0.017581;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:98:77,21:35,12:42,9
+chr21	9715188	.	G	A	0	PASS	DP=219;GPV=1;SPV=8.7935e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:83,35:41,12:42,23
+chr21	9765769	.	T	G	0	PASS	DP=142;GPV=1;SPV=0.010687;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:61,19:46,16:15,3
+chr21	9819014	.	G	C	0	PASS	DP=1593;GPV=1;SPV=0.041702;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:856:766,90:347,37:419,53
+chr21	9854292	.	G	A	0	PASS	DP=204;GPV=1;SPV=0.038086;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:112:90,22:51,14:39,8
+chr21	9857848	.	G	A	0	PASS	DP=208;GPV=1;SPV=0.016928;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:116:91,25:39,7:52,18
+chr21	9883337	.	G	A	0	PASS	DP=210;GPV=1;SPV=0.0094936;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:115:91,24:41,12:50,12
+chr21	9895530	.	A	T	0	PASS	DP=192;GPV=1;SPV=0.0054636;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:84,22:29,8:55,14
+chr21	9910990	.	A	G	0	PASS	DP=164;GPV=1;SPV=0.011682;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:69,22:38,10:31,12
+chr21	9923103	.	T	C	0	PASS	DP=198;GPV=1;SPV=0.0042647;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:80,24:32,13:48,11
+chr21	9929347	.	A	C	0	PASS	DP=194;GPV=1;SPV=0.0051875;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:110:83,27:42,10:41,17
+chr21	9973003	.	C	T	0	PASS	DP=207;GPV=1;SPV=0.023625;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:122:97,25:36,17:61,8
+chr21	9981102	.	CTTTCTT	C	0	PASS	DP=88;GPV=1;SPV=0.048675;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:5,1:39,4
+chr21	10122235	.	C	T	0	PASS	DP=178;GPV=1;SPV=0.012779;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:73,22:38,13:35,9
+chr21	10137758	.	C	T	0	PASS	DP=242;GPV=1;SPV=0.041384;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:106,24:39,9:67,15
+chr21	10139215	.	C	T	0	PASS	DP=228;GPV=1;SPV=0.049177;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:119:107,12:60,10:47,2
+chr21	10325690	.	C	T	0	PASS	DP=308;GPV=1;SPV=0.038903;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:164:140,24:70,13:70,11
+chr21	10331097	.	A	G	0	PASS	DP=452;GPV=1;SPV=0.026031;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:243:211,32:96,13:115,19
+chr21	10333449	.	TCTC	T	0	PASS	DP=408;GPV=1;SPV=0.028843;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:233:206,27:112,13:94,14
+chr21	10370486	.	T	TTATC	0	PASS	DP=80;GPV=1;SPV=0.045325;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,10:9,8:19,2
+chr21	10372845	.	A	AAAAAGAAAAGAAAAG	0	PASS	DP=174;GPV=1;SPV=0.024544;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:85:72,9:47,8:25,1
+chr21	10374957	.	G	C	0	PASS	DP=278;GPV=1;SPV=0.0063768;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:150:122,28:52,4:70,24
+chr21	10410279	.	C	A	0	PASS	DP=280;GPV=1;SPV=0.032388;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:157:135,22:61,11:74,11
+chr21	10440223	.	A	G	0	PASS	DP=494;GPV=1;SPV=0.049025;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:282:250,32:101,16:149,16
+chr21	10453718	.	G	A	0	PASS	DP=426;GPV=1;SPV=0.031111;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:230:206,24:107,14:99,10
+chr21	10675252	.	C	G	0	PASS	DP=87;GPV=1;SPV=0.0012943;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:37,10:19,8:18,2
+chr21	10691179	.	A	T	0	PASS	DP=171;GPV=1;SPV=0.0042448;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:70,21:31,10:39,11
+chr21	10733585	.	CCATTCCATTCCATTCCAT	C	0	PASS	DP=180;GPV=1;SPV=0.02107;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:77,17:41,5:36,12
+chr21	10756286	.	G	C	0	PASS	DP=401;GPV=1;SPV=0.021145;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:226:197,29:104,9:93,20
+chr21	13016291	.	A	AG	0	PASS	DP=112;GPV=1;SPV=0.0027062;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:50,9:27,7:23,2
+chr21	13109689	.	T	G	0	PASS	DP=58;GPV=1;SPV=0.21541;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:18,1:18,3
+chr21	13178547	.	A	G	0	PASS	DP=130;GPV=1;SPV=0.048782;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:57,10:39,9:18,1
+chr21	13370830	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.040848;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:18,2:17,3
+chr21	13507129	.	T	TATGC	0	PASS	DP=76;GPV=1;SPV=0.062923;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:22,4:17,1
+chr21	13507133	.	TG	T	0	PASS	DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:20,4:12,3
+chr21	13507148	.	C	CATATCCATAT	0	PASS	DP=73;GPV=1;SPV=0.019777;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:21,4:15,3
+chr21	15220771	.	A	T	0	PASS	DP=78;GPV=1;SPV=0.040295;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:11,1:26,4
+chr21	15220773	.	A	T	0	PASS	DP=79;GPV=1;SPV=0.048187;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:13,1:26,4
+chr21	15939487	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.036677;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:15,4:13,1
+chr21	16546313	.	C	CA	0	PASS	DP=47;GPV=1;SPV=9.186e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:9,16:5,14:4,2
+chr21	16689769	.	C	CAAA	0	PASS	DP=42;GPV=1;SPV=0.030207;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:6,4:2,1
+chr21	18365632	.	T	TTC	0	PASS	DP=29;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:4,1:10,3
+chr21	20508556	.	TG	T	0	PASS	DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:11,1:21,3
+chr21	21720242	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.058442;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,4:9,1:5,3
+chr21	23147147	.	G	C	0	PASS	DP=86;GPV=1;SPV=0.0084455;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:38,7:20,5:18,2
+chr21	23785046	.	A	AG	0	PASS	DP=20;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:5,4:0,0
+chr21	24248367	.	C	CAAAAAAA	0	PASS	DP=28;GPV=1;SPV=0.2488;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:6,2:6,2
+chr21	25177275	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.000113;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:9,4:14,9
+chr21	25831247	.	A	AAAAAAG	0	PASS	DP=48;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,9:6,7:7,2
+chr21	25917261	.	C	CA	0	PASS	DP=50;GPV=1;SPV=0.047147;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,5:13,4:9,1
+chr21	26395875	.	G	A	0	PASS	DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:7,1:9,3
+chr21	29100700	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:8,3:5,2
+chr21	30580160	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.0032828;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:19,7:21,3
+chr21	31064060	.	T	G	0	PASS	DP=57;GPV=1;SPV=0.19298;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:9,8:6,7:3,1
+chr21	31564155	.	ATTTTTT	A	0	PASS	DP=35;GPV=1;SPV=0.0087912;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:21:0,11:0,4:0,7
+chr21	31785300	.	T	TCACCACCACCAC	0	PASS	DP=20;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:0,5:0,4:0,1
+chr21	33242728	.	C	CAAA	0	PASS	DP=19;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:2,4:0,2:2,2
+chr21	33275152	.	CT	C	0	PASS	DP=43;GPV=1;SPV=0.00052122;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:10,7:2,2
+chr21	33985104	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.017549;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:9,5:11,5
+chr21	34079602	.	ATT	A	0	PASS	DP=37;GPV=1;SPV=0.0032051;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,11:4,4:6,7
+chr21	34563754	.	CA	C	0	PASS	DP=28;GPV=1;SPV=0.32712;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,4:5,2:5,2
+chr21	34563796	.	G	T	0	PASS	DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:2,1:6,5
+chr21	34859485	.	C	T	0	PASS	DP=69;GPV=1;SPV=1.0094e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,17:13,10:5,7
+chr21	35985942	.	T	A	0	PASS	DP=51;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:25:0,5:0,2:0,3
+chr21	36115398	.	AT	A	0	PASS	DP=28;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,6:5,5:1,1
+chr21	36458485	.	A	T	0	PASS	DP=92;GPV=1;SPV=7.9266e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:19,7:14,5
+chr21	36489333	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.0031363;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:38,16:22,9:16,7
+chr21	41655990	.	AAC	A	0	PASS	DP=43;GPV=1;SPV=0.040214;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:7,2:6,5
+chr21	41781015	.	A	AAGGAAGGGAGGG	0	PASS	DP=31;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:13,4:0,0
+chr21	42795970	.	C	CAA	0	PASS	DP=44;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,6:2,5:6,1
+chr21	42840043	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:15,1:13,3
+chr21	42840044	.	A	G	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:8,1:12,3
+chr21	42952795	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.0042194;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:8,9:7,2
+chr21	44828163	.	C	CAAA	0	PASS	DP=49;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,10:14,9:6,1
+chr21	44973001	.	G	A	0	PASS	DP=107;GPV=1;SPV=0.032506;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:46,9:20,6:26,3
+chr21	46005922	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.079663;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:14,4:21,1
+chr21	46209576	.	T	C	0	PASS	DP=89;GPV=1;SPV=1.7127e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:27,21:14,9:13,12
+chr21	46502437	.	AT	A	0	PASS	DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:9,3:3,2
+chr22	10515468	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.0026385;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,8:6,4:3,4
+chr22	10527435	.	G	A	0	PASS	DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:1,0:17,4
+chr22	10532777	.	C	A	0	PASS	DP=200;GPV=1;SPV=0.028811;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:93,21:45,5:48,16
+chr22	10558134	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:0,0:35,4
+chr22	10595912	.	G	T	0	PASS	DP=37;GPV=1;SPV=0.015249;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:12,8:4,3
+chr22	10619665	.	G	A	0	PASS	DP=103;GPV=1;SPV=0.027107;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,11:29,7:13,4
+chr22	10687725	.	G	T	0	PASS	DP=294;GPV=1;SPV=0.028858;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:148:131,17:64,7:67,10
+chr22	10688005	.	G	A	0	PASS	DP=191;GPV=1;SPV=0.01099;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:87,16:35,9:52,7
+chr22	10689266	.	TTA	T	0	PASS	DP=110;GPV=1;SPV=0.013255;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:47,11:18,4:29,7
+chr22	10710438	.	T	G	0	PASS	DP=477;GPV=1;SPV=7.9607e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:271:237,34:116,16:121,18
+chr22	10713037	.	A	C	0	PASS	DP=488;GPV=1;SPV=0.049445;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:237:211,26:118,15:93,11
+chr22	10713116	.	T	C	0	PASS	DP=486;GPV=1;SPV=0.031031;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:250:221,29:125,11:96,18
+chr22	10715443	.	G	C	0	PASS	DP=398;GPV=1;SPV=0.035464;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:193,24:78,10:115,14
+chr22	10735435	.	G	A	0	PASS	DP=591;GPV=1;SPV=0.025866;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:279:251,28:104,14:147,14
+chr22	10740709	.	T	C	0	PASS	DP=745;GPV=1;SPV=0.027163;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:400:345,55:187,30:158,25
+chr22	10774323	.	C	G	0	PASS	DP=239;GPV=1;SPV=0.047186;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:130:112,18:43,7:69,11
+chr22	10783174	.	C	G	0	PASS	DP=537;GPV=1;SPV=0.0073097;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:300:268,32:153,20:115,12
+chr22	11025039	.	C	T	0	PASS	DP=536;GPV=1;SPV=0.046535;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:279:244,35:161,25:83,10
+chr22	11025413	.	A	C	0	PASS	DP=356;GPV=1;SPV=0.00050264;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:200:161,39:73,12:88,27
+chr22	11032829	.	C	G	0	PASS	DP=340;GPV=1;SPV=0.024978;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:187:160,27:85,12:75,15
+chr22	11037145	.	G	T	0	PASS	DP=580;GPV=1;SPV=0.030083;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:302:268,34:108,13:160,21
+chr22	11051002	.	A	AT	0	PASS	DP=339;GPV=1;SPV=0.0056207;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:174:123,25:79,15:44,10
+chr22	11051392	.	C	CTT	0	PASS	DP=241;GPV=1;SPV=0.0010608;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:141:83,33:48,14:35,19
+chr22	11052377	.	G	A	0	PASS	DP=284;GPV=1;SPV=0.021315;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:132,24:60,14:72,10
+chr22	11053495	.	G	A	0	PASS	DP=524;GPV=1;SPV=0.03049;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:269:240,29:147,13:93,16
+chr22	11067683	.	G	T	0	PASS	DP=502;GPV=1;SPV=0.016094;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:280:239,41:117,19:122,22
+chr22	11704828	.	G	T	0	PASS	DP=53;GPV=1;SPV=0.039473;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:15,4:11,2
+chr22	11706815	.	C	A	0	PASS	DP=201;GPV=1;SPV=0.029311;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:85,19:43,12:42,7
+chr22	11716434	.	G	A	0	PASS	DP=140;GPV=1;SPV=0.033757;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:56,11:26,4:30,7
+chr22	11789821	.	C	A	0	PASS	DP=75;GPV=1;SPV=0.035057;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:11,5:27,1
+chr22	11792484	.	C	A	0	PASS	DP=174;GPV=1;SPV=0.003997;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:70,23:29,9:41,14
+chr22	11800116	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:7,1:13,3
+chr22	11808139	.	A	G	0	PASS	DP=223;GPV=1;SPV=0.021598;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:122:107,15:37,6:70,9
+chr22	11824968	.	C	A	0	PASS	DP=67;GPV=1;SPV=0.039036;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:17,4:14,1
+chr22	11849927	.	T	A	0	PASS	DP=280;GPV=1;SPV=0.015956;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:132:108,24:39,8:69,16
+chr22	11851137	.	C	T	0	PASS	DP=173;GPV=1;SPV=0.0478;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:72,12:9,6:63,6
+chr22	11862800	.	G	T	0	PASS	DP=312;GPV=1;SPV=0.0023027;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:164:138,26:75,6:63,20
+chr22	11862849	.	C	T	0	PASS	DP=195;GPV=1;SPV=0.0099818;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:91,17:37,5:54,12
+chr22	11863886	.	T	C	0	PASS	DP=232;GPV=1;SPV=0.021636;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:111:87,17:24,3:63,14
+chr22	11872739	.	G	A	0	PASS	DP=598;GPV=1;SPV=0.037931;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:321:276,45:67,26:209,19
+chr22	11880183	.	C	A	0	PASS	DP=758;GPV=1;SPV=0.029906;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:424:380,44:182,25:198,19
+chr22	11884747	.	T	C	0	PASS	DP=172;GPV=1;SPV=0.022025;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:78:61,17:33,10:28,7
+chr22	11891373	.	G	A	0	PASS	DP=276;GPV=1;SPV=0.0083297;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:165:140,25:61,6:79,19
+chr22	11910029	.	T	C	0	PASS	DP=534;GPV=1;SPV=0.0017436;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:298:253,45:117,18:136,27
+chr22	11910052	.	ATT	A	0	PASS	DP=588;GPV=1;SPV=0.0077303;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:317:276,41:121,16:155,25
+chr22	11910108	.	C	T	0	PASS	DP=508;GPV=1;SPV=0.044125;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:279:249,30:105,14:144,16
+chr22	11919665	.	G	A	0	PASS	DP=689;GPV=1;SPV=0.044565;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:365:319,46:163,26:156,20
+chr22	11949405	.	A	T	0	PASS	DP=128;GPV=1;SPV=0.023767;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:64:53,9:33,8:20,1
+chr22	11965872	.	A	AT	0	PASS	DP=74;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:14,5:13,6
+chr22	12041709	.	T	C	0	PASS	DP=376;GPV=1;SPV=0.027322;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:194:166,28:85,12:81,16
+chr22	12059080	.	T	C	0	PASS	DP=112;GPV=1;SPV=0.031253;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:51,10:10,1:41,9
+chr22	12117801	.	CTTT	C	0	PASS	DP=121;GPV=1;SPV=0.030243;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:55,9:23,4:32,5
+chr22	12141119	.	T	C	0	PASS	DP=225;GPV=1;SPV=0.0016122;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:126:112,14:41,6:71,8
+chr22	12141913	.	T	A	0	PASS	DP=175;GPV=1;SPV=0.035797;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:101:90,11:37,8:53,3
+chr22	12150278	.	A	T	0	PASS	DP=224;GPV=1;SPV=0.03149;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:107,14:36,6:71,8
+chr22	12204530	.	A	G	0	PASS	DP=377;GPV=1;SPV=0.030182;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:198:168,30:78,11:90,19
+chr22	12217824	.	G	A	0	PASS	DP=172;GPV=1;SPV=0.011982;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:72,21:47,16:25,5
+chr22	12297999	.	G	C	0	PASS	DP=200;GPV=1;SPV=0.041699;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:85,20:27,7:58,13
+chr22	12379640	.	A	T	0	PASS	DP=184;GPV=1;SPV=0.0093892;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:95:75,20:44,5:31,15
+chr22	12395058	.	C	T	0	PASS	DP=243;GPV=1;SPV=0.020863;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:132:107,25:59,17:48,8
+chr22	12494373	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.012821;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:28,9:2,1
+chr22	12621814	.	C	T	0	PASS	DP=320;GPV=1;SPV=0.031921;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:170:150,20:75,13:75,7
+chr22	12621815	.	A	G	0	PASS	DP=327;GPV=1;SPV=0.0045834;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:177:153,24:75,16:78,8
+chr22	12628383	.	T	G	0	PASS	DP=303;GPV=1;SPV=0.0056617;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:165:147,18:91,15:56,3
+chr22	12720595	.	C	T	0	PASS	DP=168;GPV=1;SPV=0.04159;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:71,11:41,9:30,2
+chr22	12791545	.	T	G	0	PASS	DP=93;GPV=1;SPV=0.008703;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:45,8:24,7:21,1
+chr22	12807142	.	G	A	0	PASS	DP=234;GPV=1;SPV=0.0090814;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:116:100,16:48,9:52,7
+chr22	12873772	.	C	T	0	PASS	DP=728;GPV=1;SPV=0.017611;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:393:350,43:189,14:161,29
+chr22	15251751	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.010876;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,4:5,2
+chr22	15544861	.	CT	C	0	PASS	DP=93;GPV=1;SPV=0.014087;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:26,1:15,5
+chr22	15557613	.	A	T	0	PASS	DP=179;GPV=1;SPV=0.032489;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:75,15:41,8:34,7
+chr22	15564283	.	C	G	0	PASS	DP=56;GPV=1;SPV=0.0074047;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:13,2:11,6
+chr22	15565713	.	G	A	0	PASS	DP=236;GPV=1;SPV=0.016353;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:118:100,18:58,8:42,10
+chr22	15569125	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr22	15578215	.	G	A	0	PASS	DP=135;GPV=1;SPV=0.022403;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:57,16:27,6:30,10
+chr22	15679673	.	C	G	0	PASS	DP=97;GPV=1;SPV=0.031468;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:40,14:21,7:19,7
+chr22	15737058	.	G	A	0	PASS	DP=61;GPV=1;SPV=0.036388;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:16,4:10,8
+chr22	15737153	.	C	T	0	PASS	DP=51;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:16,1:10,3
+chr22	15755684	.	C	A	0	PASS	DP=126;GPV=1;SPV=0.0010651;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:59,11:30,4:29,7
+chr22	15803926	.	CA	C	0	PASS	DP=93;GPV=1;SPV=0.030404;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:22,2:14,6
+chr22	15803932	.	A	C	0	PASS	DP=83;GPV=1;SPV=0.033733;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:22,2:10,6
+chr22	15817353	.	C	A	0	PASS	DP=128;GPV=1;SPV=0.033127;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:60,16:33,9:27,7
+chr22	16451898	.	T	C	0	PASS	DP=157;GPV=1;SPV=0.023234;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:72,10:32,2:40,8
+chr22	16677660	.	CT	C	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:4,3:1,1
+chr22	17680215	.	C	CAAAAAAAAA	0	PASS	DP=43;GPV=1;SPV=0.01398;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:10,8:5,1
+chr22	18491271	.	G	A	0	PASS	DP=55;GPV=1;SPV=0.025398;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:10,2:15,4
+chr22	18526584	.	T	G	0	PASS	DP=57;GPV=1;SPV=0.045802;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:8,3:14,3
+chr22	18631998	.	C	G	0	PASS	DP=54;GPV=1;SPV=0.040114;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:9,5:11,1
+chr22	18748951	.	T	C	0	PASS	DP=131;GPV=1;SPV=0.0042912;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:70:51,19:22,8:29,11
+chr22	19589749	.	ATGTGTGTG	A	0	PASS	DP=37;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:7,1:8,3
+chr22	19647482	.	T	A	0	PASS	DP=64;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:5,2:2,1:3,1
+chr22	21167912	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr22	21171889	.	C	T	0	PASS	DP=68;GPV=1;SPV=0.049568;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:12,3:9,4
+chr22	21283575	.	G	A	0	PASS	DP=125;GPV=1;SPV=0.0052909;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:54,13:48,9:6,4
+chr22	21327287	.	ATATTTAATG	A	0	PASS	DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:10,1:5,4
+chr22	21789901	.	TA	T	0	PASS	DP=93;GPV=1;SPV=0.035754;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:24,3:13,5
+chr22	22336932	.	T	C	0	PASS	DP=76;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:15,5:16,4
+chr22	22634572	.	G	A	0	PASS	DP=90;GPV=1;SPV=0.011338;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:7,2:31,4
+chr22	22636857	.	A	C	0	PASS	DP=76;GPV=1;SPV=0.074196;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:20,2:21,3
+chr22	22638606	.	T	C	0	PASS	DP=80;GPV=1;SPV=0.023491;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:14,1:24,5
+chr22	23156145	.	G	GAA	0	PASS	DP=46;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:7,2:8,2
+chr22	23718138	.	CAA	C	0	PASS	DP=37;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,6:5,4:2,2
+chr22	23917756	.	C	CAAAAA	0	PASS	DP=45;GPV=1;SPV=0.015459;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:13,6:1,2
+chr22	23951068	.	TC	T	0	PASS	DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:5,1:14,3
+chr22	24261891	.	G	A	0	PASS	DP=131;GPV=1;SPV=0.028928;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:57,9:29,8:28,1
+chr22	24643645	.	C	A	0	PASS	DP=75;GPV=1;SPV=0.04342;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:36,5:16,1:20,4
+chr22	25497868	.	CAAA	C	0	PASS	DP=49;GPV=1;SPV=0.0012088;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,16:11,14:2,2
+chr22	26416397	.	G	A	0	PASS	DP=89;GPV=1;SPV=2.1596e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:22,19:15,12:7,7
+chr22	27036071	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:8,5:4,2
+chr22	27041284	.	C	T	0	PASS	DP=81;GPV=1;SPV=8.6693e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:21,19:13,9:8,10
+chr22	27130166	.	C	CT	0	PASS	DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:7,5:3,1
+chr22	30454606	.	ATAT	A	0	PASS	DP=42;GPV=1;SPV=0.1396;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:5,2:19,3
+chr22	31129542	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:4,3:5,3
+chr22	31377200	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.028009;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,8:5,6:5,2
+chr22	31795065	.	AT	A	0	PASS	DP=45;GPV=1;SPV=0.030178;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,10:15,8:3,2
+chr22	32559832	.	C	CA	0	PASS	DP=78;GPV=1;SPV=0.016203;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,6:17,4:16,2
+chr22	33139537	.	C	A	0	PASS	DP=84;GPV=1;SPV=1.1736e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:32,20:16,9:16,11
+chr22	33220224	.	C	T	0	PASS	DP=85;GPV=1;SPV=4.4311e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,19:10,11:20,8
+chr22	33574686	.	TTGTGTGTGTGTG	T	0	PASS	DP=34;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:8,10:4,4:4,6
+chr22	33805508	.	C	T	0	PASS	DP=90;GPV=1;SPV=1.6689e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:25,14:13,9:12,5
+chr22	33805761	.	G	A	0	PASS	DP=66;GPV=1;SPV=0.0080302;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:12,8:3,5:9,3
+chr22	34168569	.	C	A	0	PASS	DP=94;GPV=1;SPV=0.00018622;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:40,14:19,6:21,8
+chr22	34437204	.	GA	G	0	PASS	DP=74;GPV=1;SPV=3.0526e-06;SS=2;SSC=55;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:11,8:10,7
+chr22	34664854	.	A	AT	0	PASS	DP=67;GPV=1;SPV=0.00025582;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:15,10:8,8:7,2
+chr22	35875607	.	GGTGT	G	0	PASS	DP=33;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,5:5,3:6,2
+chr22	36210011	.	C	T	0	PASS	DP=80;GPV=1;SPV=6.4115e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:14,7:10,7
+chr22	36251070	.	C	CA	0	PASS	DP=58;GPV=1;SPV=0.019126;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,8:17,7:4,1
+chr22	36354956	.	A	AACACACACACACACACACAC	0	PASS	DP=53;GPV=1;SPV=0.11312;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:30,5:14,4:16,1
+chr22	37711592	.	AC	A	0	PASS	DP=50;GPV=1;SPV=0.010299;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,8:7,6:12,2
+chr22	37728262	.	A	C	0	PASS	DP=49;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:5,2:2,1:3,1
+chr22	38478534	.	C	CA	0	PASS	DP=42;GPV=1;SPV=0.0093932;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,10:4,4:7,6
+chr22	39620766	.	T	G	0	PASS	DP=75;GPV=1;SPV=0.16591;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:24,4:13,2:11,2
+chr22	40145067	.	C	CAA	0	PASS	DP=51;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,8:9,7:11,1
+chr22	41033338	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.013602;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,13:16,5:12,8
+chr22	41066798	.	A	G	0	PASS	DP=81;GPV=1;SPV=2.8289e-08;SS=2;SSC=75;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:21,22:14,12:7,10
+chr22	41357774	.	G	A	0	PASS	DP=111;GPV=1;SPV=6.1491e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:16,8:21,6
+chr22	41457120	.	CA	C	0	PASS	DP=28;GPV=1;SPV=0.012882;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:6,6:3,1
+chr22	41864324	.	T	TA	0	PASS	DP=35;GPV=1;SPV=0.011216;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,5:3,3:3,2
+chr22	41864326	.	T	A	0	PASS	DP=40;GPV=1;SPV=0.01192;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,8:5,6:4,2
+chr22	42666228	.	C	CAA	0	PASS	DP=48;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,13:11,11:5,2
+chr22	43165890	.	C	CTT	0	PASS	DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:12,3:2,1
+chr22	44629323	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.048243;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:20,7:11,5:9,2
+chr22	45063002	.	AATTTT	A	0	PASS	DP=82;GPV=1;SPV=0.023653;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:7,8:19,2
+chr22	47667517	.	GTTTTT	G	0	PASS	DP=18;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:2,2:2,2
+chr22	48726557	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.031171;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:13,5:27,1
+chr22	48726583	.	C	T	0	PASS	DP=66;GPV=1;SPV=0.048775;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:12,2:20,3
+chr22	48726597	.	T	C	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:11,3:17,1
+chr22	48956408	.	A	AC	0	PASS	DP=49;GPV=1;SPV=0.0030462;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,9:4,3:7,6
+chr22	49066953	.	T	G	0	PASS	DP=51;GPV=1;SPV=0.11845;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:13,2:16,3
+chr22	49433501	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:8,3:5,1
+chr22	49693705	.	T	G	0	PASS	DP=86;GPV=1;SPV=0.00011692;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:33,13:16,3:17,10
+chr3	4566604	.	G	GCACACACA	0	PASS	DP=35;GPV=1;SPV=0.019985;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,10:6,8:3,2
+chr3	5111167	.	C	CA	0	PASS	DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:1,0:13,4
+chr3	6429035	.	C	G	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:6,2:9,2
+chr3	6799365	.	G	GA	0	PASS	DP=51;GPV=1;SPV=0.0020146;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,8:13,5:4,3
+chr3	8612658	.	C	A	0	PASS	DP=44;GPV=1;SPV=0.026298;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:5,5:9,1
+chr3	8742375	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.030897;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:4,3:8,1
+chr3	9511350	.	CA	C	0	PASS	DP=60;GPV=1;SPV=0.0034707;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:14,5:7,2
+chr3	11841073	.	ATTT	A	0	PASS	DP=33;GPV=1;SPV=0.025708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:9,3:2,2
+chr3	18305569	.	C	CTCTCTCT	0	PASS	DP=52;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:2,4:2,1:0,3
+chr3	18324800	.	A	T	0	PASS	DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:22,7:6,2:16,5
+chr3	18553747	.	T	C	0	PASS	DP=85;GPV=1;SPV=1.0994e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:14,9:12,4
+chr3	20755436	.	T	TTG	0	PASS	DP=47;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:8,8:3,5:5,3
+chr3	20856087	.	CCAGAGT	C	0	PASS	DP=40;GPV=1;SPV=0.023613;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:9,5:3,1
+chr3	20856104	.	C	CCAGAGT	0	PASS	DP=35;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,7:6,5:1,2
+chr3	20988867	.	CTT	C	0	PASS	DP=52;GPV=1;SPV=0.017612;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,8:8,4:6,4
+chr3	21682728	.	CT	C	0	PASS	DP=77;GPV=1;SPV=9.7753e-05;SS=2;SSC=40;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:15,7:15,8
+chr3	21689130	.	C	CA	0	PASS	DP=52;GPV=1;SPV=0.013927;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:9,8:8,2
+chr3	22530753	.	G	GTT	0	PASS	DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:7,3:5,1
+chr3	22546163	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.017286;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:9,4:5,7
+chr3	23113226	.	C	CAT	0	PASS	DP=26;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,5:0,4:3,1
+chr3	23290889	.	T	TAA	0	PASS	DP=39;GPV=1;SPV=0.0079695;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:10,7:5,1
+chr3	23752505	.	CT	C	0	PASS	DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:5,4:5,5
+chr3	24787864	.	TATACAC	T	0	PASS	DP=57;GPV=1;SPV=0.041843;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:13,6:10,5
+chr3	24913402	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.0098833;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:23:3,9:3,4:0,5
+chr3	25133963	.	T	TAA	0	PASS	DP=52;GPV=1;SPV=0.014127;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,9:8,5:12,4
+chr3	27587474	.	A	AT	0	PASS	DP=58;GPV=1;SPV=3.7952e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:5,9:12,4
+chr3	28015880	.	C	T	0	PASS	DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:6,1:5,3
+chr3	29435973	.	C	CAA	0	PASS	DP=82;GPV=1;SPV=0.00034388;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,18:12,15:18,3
+chr3	30186088	.	T	TTAA	0	PASS	DP=72;GPV=1;SPV=0.088833;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:17,1:19,3
+chr3	33434289	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:4,1:2,3
+chr3	34654288	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:0,0:18,4
+chr3	36918610	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:10,4:7,1
+chr3	38033298	.	A	ATTT	0	PASS	DP=37;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,7:2,4:10,3
+chr3	38259441	.	CAT	C	0	PASS	DP=23;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:5,4:3,1
+chr3	38759067	.	C	T	0	PASS	DP=75;GPV=1;SPV=0.0035502;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:16,5:17,4
+chr3	39512143	.	G	C	0	PASS	DP=92;GPV=1;SPV=0.0027042;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:27,4:16,6
+chr3	42271566	.	C	T	0	PASS	DP=76;GPV=1;SPV=3.6217e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:17,18:11,10:6,8
+chr3	42427757	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.0059941;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:14,9:8,7:6,2
+chr3	44191534	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:12,4:8,2:4,2
+chr3	45205918	.	CATATATATATATATATATATATATATATATATATATATATAT	C	0	PASS	DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,6:3,3:3,3
+chr3	46699060	.	A	ATT	0	PASS	DP=27;GPV=1;SPV=0.0037707;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,7:2,5:1,2
+chr3	47316564	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:5,1:8,3
+chr3	47539503	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:19,2:13,2
+chr3	47650304	.	T	A	0	PASS	DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:13,2:13,2
+chr3	47708086	.	T	TTTTTC	0	PASS	DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:8,3:10,1
+chr3	47769210	.	C	CCA	0	PASS	DP=28;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:2,4:6,1
+chr3	48100231	.	A	ATTTTTTTTTTTT	0	PASS	DP=16;GPV=1;SPV=0.0012432;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:1,7:0,4:1,3
+chr3	48825028	.	CTT	C	0	PASS	DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:4,5:4,2
+chr3	49145119	.	C	CT	0	PASS	DP=30;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:3,4:10,1
+chr3	49564269	.	C	T	0	PASS	DP=78;GPV=1;SPV=2.295e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:26,21:17,11:9,10
+chr3	50729353	.	TTA	T	0	PASS	DP=75;GPV=1;SPV=0.053325;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:24,3:17,3
+chr3	51515929	.	C	CT	0	PASS	DP=31;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:10,5:5,1
+chr3	51527671	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.013574;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:12,6:6,3
+chr3	51777374	.	A	AACACAC	0	PASS	DP=54;GPV=1;SPV=0.032319;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:23,10:13,6:10,4
+chr3	52793297	.	A	AT	0	PASS	DP=71;GPV=1;SPV=0.013344;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,8:15,4:10,4
+chr3	53316596	.	CT	C	0	PASS	DP=41;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:6,10:3,5:3,5
+chr3	53555439	.	T	TGG	0	PASS	DP=42;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,4:14,2:7,2
+chr3	55589215	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:12,3:7,1
+chr3	57649530	.	T	TA	0	PASS	DP=56;GPV=1;SPV=0.0026369;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,13:9,6:8,7
+chr3	59646497	.	CAAAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=30;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,5:2,4:3,1
+chr3	64193563	.	C	T	0	PASS	DP=85;GPV=1;SPV=2.0579e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:13,6:13,6
+chr3	66941692	.	TCTAG	T	0	PASS	DP=66;GPV=1;SPV=0.017873;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,6:10,4:4,2
+chr3	67679793	.	T	TA	0	PASS	DP=37;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,7:3,6:3,1
+chr3	68148279	.	G	A	0	PASS	DP=93;GPV=1;SPV=1.8779e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:25,21:13,12:12,9
+chr3	69656637	.	TGTGCAACA	T	0	PASS	DP=72;GPV=1;SPV=3.2589e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:12,4:11,9
+chr3	73162166	.	C	CT	0	PASS	DP=48;GPV=1;SPV=0.0034955;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,14:7,9:9,5
+chr3	74233543	.	G	A	0	PASS	DP=74;GPV=1;SPV=5.8154e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:6,7:11,7
+chr3	75443072	.	CATATATAT	C	0	PASS	DP=37;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:10,7:5,3:5,4
+chr3	75466093	.	TTCTCTC	T	0	PASS	DP=45;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:13,7:9,6:4,1
+chr3	75544518	.	T	TA	0	PASS	DP=49;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:11,3:4,5
+chr3	75630855	.	T	C	0	PASS	DP=432;GPV=1;SPV=0.0086559;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:227:193,34:89,14:104,20
+chr3	75636215	.	TTTACA	T	0	PASS	DP=124;GPV=1;SPV=0.00073785;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:34,18:23,7:11,11
+chr3	75799240	.	G	A	0	PASS	DP=128;GPV=1;SPV=0.043876;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:65,8:37,6:28,2
+chr3	76160831	.	A	G	0	PASS	DP=81;GPV=1;SPV=0.00040665;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:15,4:18,8
+chr3	76603332	.	CAAAAAA	C	0	PASS	DP=30;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:6,3:6,1
+chr3	76941714	.	G	A	0	PASS	DP=75;GPV=1;SPV=3.6992e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:24,18:14,10:10,8
+chr3	77437661	.	G	A	0	PASS	DP=86;GPV=1;SPV=4.4652e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:26,19:15,11:11,8
+chr3	78712038	.	A	C	0	PASS	DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:7,2:5,3
+chr3	82029772	.	A	C	0	PASS	DP=98;GPV=1;SPV=8.5764e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:15,6:21,6
+chr3	82731343	.	T	TCA	0	PASS	DP=65;GPV=1;SPV=0.045958;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,9:13,3:8,6
+chr3	83829507	.	C	T	0	PASS	DP=81;GPV=1;SPV=0.0018636;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:23,7:14,4
+chr3	84560279	.	T	TA	0	PASS	DP=88;GPV=1;SPV=0.0019283;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:13,2:24,7
+chr3	84817008	.	T	A	0	PASS	DP=64;GPV=1;SPV=6.8751e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:8,7:12,5
+chr3	85175919	.	CT	C	0	PASS	DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:7,4:5,1
+chr3	85327554	.	C	CCACACACA	0	PASS	DP=35;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:12,3:6,2
+chr3	85769360	.	GTA	G	0	PASS	DP=58;GPV=1;SPV=0.036961;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:23,10:15,7:8,3
+chr3	85776336	.	T	TACACAC	0	PASS	DP=58;GPV=1;SPV=0.048633;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:14,8:8,1
+chr3	86455500	.	C	T	0	PASS	DP=95;GPV=1;SPV=4.5883e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:23,6:13,8
+chr3	86819647	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.25076;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:11,1:18,3
+chr3	86843970	.	T	TAAA	0	PASS	DP=23;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:4,3:5,2
+chr3	86934470	.	CTA	C	0	PASS	DP=62;GPV=1;SPV=0.13232;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:19,1:15,3
+chr3	87168932	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:15,3:11,1
+chr3	88600837	.	C	G	0	PASS	DP=72;GPV=1;SPV=1.6063e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,15:7,7:12,8
+chr3	89415467	.	A	AATATATATATATATAT	0	PASS	DP=47;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,4:15,1:6,3
+chr3	89570143	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.032087;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,12:17,7:4,5
+chr3	90078631	.	A	G	0	PASS	DP=83;GPV=1;SPV=9.0699e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:19,5:13,9
+chr3	90709652	.	T	A	0	PASS	DP=37;GPV=1;SPV=7.1674e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:20:3,17:1,6:2,11
+chr3	90793933	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.041838;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,5:10,2:13,3
+chr3	90798273	.	A	G	0	PASS	DP=65;GPV=1;SPV=0.019069;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:1,1:22,8
+chr3	90819203	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:34,4:1,0
+chr3	90820754	.	G	A	0	PASS	DP=92;GPV=1;SPV=0.0075937;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:26,4:11,5
+chr3	90940738	.	C	T	0	PASS	DP=108;GPV=1;SPV=0.03083;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:42,10:18,4:24,6
+chr3	90946971	.	A	C	0	PASS	DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:1,1:4,7
+chr3	90960127	.	T	C	0	PASS	DP=427;GPV=1;SPV=0.017457;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:227:202,25:43,5:159,20
+chr3	90960336	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.049167;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:25,3:18,2
+chr3	90964893	.	T	G	0	PASS	DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:21,4:1,0
+chr3	90972114	.	T	A	0	PASS	DP=294;GPV=1;SPV=0.046319;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:118,20:8,1:110,19
+chr3	91033421	.	C	G	0	PASS	DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:17,3:3,1
+chr3	91114091	.	C	G	0	PASS	DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:0,1:4,5
+chr3	91136381	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:5,1:1,1
+chr3	91155170	.	A	C	0	PASS	DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:9,1:8,3
+chr3	91168881	.	T	A	0	PASS	DP=270;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:149:127,20:46,5:81,15
+chr3	91185986	.	G	T	0	PASS	DP=76;GPV=1;SPV=0.071233;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:14,1:22,3
+chr3	91257575	.	A	T	0	PASS	DP=91;GPV=1;SPV=0.023;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:11,6:22,6
+chr3	91734902	.	T	G	0	PASS	DP=179;GPV=1;SPV=0.020773;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:74,14:52,10:22,4
+chr3	92895933	.	C	T	0	PASS	DP=70;GPV=1;SPV=0.11326;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:17,4:24,1
+chr3	93231826	.	C	A	0	PASS	DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,7:2,5:7,2
+chr3	93628962	.	A	C	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:6,3:0,0
+chr3	95045306	.	G	A	0	PASS	DP=77;GPV=1;SPV=2.2804e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:18,20:8,10:10,10
+chr3	95799926	.	C	T	0	PASS	DP=98;GPV=1;SPV=2.1763e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,19:13,13:17,6
+chr3	97179717	.	G	GTCTCTCTC	0	PASS	DP=58;GPV=1;SPV=0.047969;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:11,5:12,4
+chr3	97516006	.	C	T	0	PASS	DP=60;GPV=1;SPV=0.00016135;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:14,8:6,4
+chr3	97669261	.	G	GT	0	PASS	DP=71;GPV=1;SPV=0.0012641;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:13,5:14,4
+chr3	98689394	.	T	TATACATGGAAACATATA	0	PASS	DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:10,2:3,2
+chr3	98761022	.	T	C	0	PASS	DP=84;GPV=1;SPV=0.00030829;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:35,13:22,5:13,8
+chr3	102475930	.	C	T	0	PASS	DP=80;GPV=1;SPV=2.6232e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:31,19:18,10:13,9
+chr3	103575380	.	A	G	0	PASS	DP=85;GPV=1;SPV=5.1599e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,16:7,8:12,8
+chr3	104230578	.	CAAAAAAAAAAA	C	0	PASS	DP=35;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,6:2,5:8,1
+chr3	104405069	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:3,3:8,1
+chr3	105280352	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:13,2:17,2
+chr3	106155491	.	GCA	G	0	PASS	DP=58;GPV=1;SPV=0.015187;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:13,11:8,2
+chr3	107251876	.	G	A	0	PASS	DP=81;GPV=1;SPV=0.00055017;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:34,12:16,6:18,6
+chr3	107829977	.	CTT	C	0	PASS	DP=26;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:5,5:5,1
+chr3	108704397	.	C	A	0	PASS	DP=45;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:13,4:7,2:6,2
+chr3	108780415	.	G	A	0	PASS	DP=85;GPV=1;SPV=2.7129e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:29,19:14,7:15,12
+chr3	109355488	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:12,7:2,1
+chr3	109421528	.	T	TC	0	PASS	DP=41;GPV=1;SPV=0.0090069;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:9,8:4,1
+chr3	111869715	.	G	T	0	PASS	DP=77;GPV=1;SPV=0.048716;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:12,2:16,3
+chr3	112483140	.	CT	C	0	PASS	DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:3,6:5,1
+chr3	113087776	.	A	AGT	0	PASS	DP=51;GPV=1;SPV=0.0064207;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:15,11:12,6:3,5
+chr3	113113781	.	C	CTT	0	PASS	DP=29;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,11:1,8:6,3
+chr3	113683464	.	C	CTT	0	PASS	DP=27;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:5,2:6,2
+chr3	115111003	.	TAA	T	0	PASS	DP=81;GPV=1;SPV=0.013855;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:35,6:17,4:18,2
+chr3	118309745	.	A	G	0	PASS	DP=65;GPV=1;SPV=6.2466e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:6,5:10,12
+chr3	119504434	.	C	G	0	PASS	DP=78;GPV=1;SPV=7.4019e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:25,25:13,15:12,10
+chr3	119662233	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.0033075;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:12,6:1,2
+chr3	120377256	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.0018544;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:10,1:6,8
+chr3	121486895	.	G	C	0	PASS	DP=63;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:5,3:2,2:3,1
+chr3	123152111	.	T	G	0	PASS	DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:3,8:9,1
+chr3	124437274	.	T	A	0	PASS	DP=79;GPV=1;SPV=0.030818;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:16,6:17,1
+chr3	126807268	.	A	T	0	PASS	DP=56;GPV=1;SPV=1.0613e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,13:10,8:4,5
+chr3	133107455	.	G	GGT	0	PASS	DP=65;GPV=1;SPV=0.0033467;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:14,8:9,4:5,4
+chr3	135035840	.	A	C	0	PASS	DP=90;GPV=1;SPV=2.8928e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:13,10:14,9
+chr3	135277886	.	G	T	0	PASS	DP=61;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:1,2:0,1:1,1
+chr3	135588978	.	T	C	0	PASS	DP=49;GPV=1;SPV=0.024419;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:11,7:6,3
+chr3	137401062	.	C	T	0	PASS	DP=95;GPV=1;SPV=9.5596e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:35,12:18,7:17,5
+chr3	138005386	.	G	T	0	PASS	DP=40;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:2,2:14,10
+chr3	138100978	.	C	T	0	PASS	DP=90;GPV=1;SPV=1.6652e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:28,22:16,9:12,13
+chr3	141458365	.	T	TTATATA	0	PASS	DP=42;GPV=1;SPV=0.005394;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:9,8:4,2
+chr3	142496280	.	A	T	0	PASS	DP=19;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:0,5:0,4:0,1
+chr3	142528879	.	A	T	0	PASS	DP=19;GPV=1;SPV=0.0625;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,3:2,1:2,2
+chr3	142919712	.	CTTTTTTTTTTTTTTTTT	C	0	PASS	DP=28;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:7,3:4,2
+chr3	143854335	.	A	T	0	PASS	DP=80;GPV=1;SPV=5.0272e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:22,17:8,8:14,9
+chr3	143929350	.	TAG	T	0	PASS	DP=71;GPV=1;SPV=0.021372;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:13,4:16,1
+chr3	143967825	.	AC	A	0	PASS	DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,2:7,2
+chr3	147567553	.	CA	C	0	PASS	DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:14,4:7,1
+chr3	147669410	.	C	A	0	PASS	DP=99;GPV=1;SPV=3.684e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:40,16:14,8:26,8
+chr3	148190448	.	A	AACACACACACACACACAC	0	PASS	DP=49;GPV=1;SPV=0.020817;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:8,4:9,3
+chr3	148565382	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.021135;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:13,4:9,1
+chr3	150111994	.	C	CAA	0	PASS	DP=27;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,4:6,3:2,1
+chr3	151071977	.	T	TTGTG	0	PASS	DP=48;GPV=1;SPV=0.04952;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:11,3:6,5
+chr3	152727690	.	AAGAGAGAGAGAGAGAG	A	0	PASS	DP=27;GPV=1;SPV=0.011438;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,4:3,2:0,2
+chr3	152988157	.	T	C	0	PASS	DP=80;GPV=1;SPV=0.040975;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:9,4:22,6
+chr3	153038706	.	T	A	0	PASS	DP=75;GPV=1;SPV=0.062923;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:20,3:19,2
+chr3	153264487	.	A	AAC	0	PASS	DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:15,4:9,1
+chr3	154187380	.	A	ATT	0	PASS	DP=55;GPV=1;SPV=0.00044676;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,12:9,7:6,5
+chr3	154667490	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:8,4:8,1
+chr3	157202415	.	C	A	0	PASS	DP=87;GPV=1;SPV=0.040969;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,8:14,6:21,2
+chr3	158518150	.	T	A	0	PASS	DP=30;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:6,1:4,4
+chr3	161289048	.	G	GT	0	PASS	DP=41;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,4:14,3:7,1
+chr3	163096266	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.020382;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:23,7:14,5:9,2
+chr3	163902659	.	T	TAATA	0	PASS	DP=38;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,9:9,6:5,3
+chr3	165738521	.	CA	C	0	PASS	DP=40;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:9,11:5,8:4,3
+chr3	167775225	.	T	TTTA	0	PASS	DP=55;GPV=1;SPV=0.0034869;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:12,5:12,6
+chr3	169550820	.	CT	C	0	PASS	DP=39;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:11,8:4,2:7,6
+chr3	169772316	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.21107;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,5:10,3:9,2
+chr3	170158927	.	G	GA	0	PASS	DP=42;GPV=1;SPV=0.028751;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,9:8,7:10,2
+chr3	170700348	.	C	CT	0	PASS	DP=73;GPV=1;SPV=0.00014726;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:15,9:11,3
+chr3	171478467	.	G	A	0	PASS	DP=74;GPV=1;SPV=2.8834e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:21,22:11,11:10,11
+chr3	171639566	.	TA	T	0	PASS	DP=39;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,5:9,4:9,1
+chr3	172156801	.	G	C	0	PASS	DP=80;GPV=1;SPV=0.031443;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:43,7:18,6:25,1
+chr3	175242572	.	T	C	0	PASS	DP=89;GPV=1;SPV=1.1486e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:31,22:15,8:16,14
+chr3	177090517	.	T	TAA	0	PASS	DP=50;GPV=1;SPV=0.046659;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:16,3:5,5
+chr3	178908086	.	G	A	0	PASS	DP=82;GPV=1;SPV=3.1049e-08;SS=2;SSC=75;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:22,23:7,15:15,8
+chr3	179023713	.	T	A	0	PASS	DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,7:2,3:2,4
+chr3	179624571	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,4:18,1:4,3
+chr3	179679794	.	GT	G	0	PASS	DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,4:8,3:1,1
+chr3	179847051	.	C	T	0	PASS	DP=61;GPV=1;SPV=0.0028187;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:10,6:16,4
+chr3	180010267	.	C	T	0	PASS	DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:2,3:12,1
+chr3	180276865	.	A	G	0	PASS	DP=61;GPV=1;SPV=0.00082467;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:10,5:15,8
+chr3	180877568	.	C	T	0	PASS	DP=91;GPV=1;SPV=3.8427e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:27,24:14,12:13,12
+chr3	181725038	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:2,6:1,5:1,1
+chr3	182762165	.	C	CAA	0	PASS	DP=59;GPV=1;SPV=0.010647;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,11:10,7:9,4
+chr3	184075552	.	A	AACACACACAC	0	PASS	DP=44;GPV=1;SPV=0.0086792;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,10:11,7:4,3
+chr3	184542153	.	A	ACGACGAGACCCAGCTCACAATGGGAC	0	PASS	DP=61;GPV=1;SPV=0.036872;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:13,1:14,4
+chr3	184640882	.	CTT	C	0	PASS	DP=28;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:7,3:5,1
+chr3	186625004	.	T	G	0	PASS	DP=78;GPV=1;SPV=0.064931;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:41,5:18,1:23,4
+chr3	188294056	.	C	CA	0	PASS	DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:16,4:1,0
+chr3	189881272	.	T	G	0	PASS	DP=84;GPV=1;SPV=0.0072131;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:31,1:8,7
+chr3	191528605	.	TA	T	0	PASS	DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:14,2:13,2
+chr3	191528613	.	T	TA	0	PASS	DP=68;GPV=1;SPV=0.060505;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:14,2:16,2
+chr3	191528616	.	TA	T	0	PASS	DP=68;GPV=1;SPV=0.076851;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:16,2:16,2
+chr3	192190468	.	C	CTTTT	0	PASS	DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:8,4:2,1
+chr3	194092184	.	GGTTTT	G	0	PASS	DP=33;GPV=1;SPV=0.35217;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:9,3:2,1
+chr3	195045214	.	CT	C	0	PASS	DP=28;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,3:4,3
+chr3	195185100	.	AG	A	0	PASS	DP=32;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,5:2,3:2,2
+chr3	195498776	.	G	A	0	PASS	DP=189;GPV=1;SPV=0.046033;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:86,10:62,8:24,2
+chr3	195499154	.	C	A	0	PASS	DP=214;GPV=1;SPV=0.025408;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:97:84,12:46,4:38,8
+chr3	195649841	.	CAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAG	C	0	PASS	DP=62;GPV=1;SPV=0.024221;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:22,2:6,4
+chr3	195730099	.	CAAAAAAA	C	0	PASS	DP=74;GPV=1;SPV=0.043916;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:22,11:17,9:5,2
+chr3	195857983	.	CAAAAAAAAAAAAAAAAA	C	0	PASS	DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,8:4,5:2,3
+chr3	195872023	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.039859;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:16,9:12,2
+chr3	196025207	.	ACGC	A	0	PASS	DP=64;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:17,3:16,2
+chr3	196766931	.	C	CGTGT	0	PASS	DP=48;GPV=1;SPV=0.046544;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,9:14,6:3,3
+chr3	196769817	.	A	G	0	PASS	DP=76;GPV=1;SPV=0.010302;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,10:8,3:11,7
+chr3	197652901	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.017918;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,5:20,1:7,4
+chr3	197664611	.	A	G	0	PASS	DP=110;GPV=1;SPV=0.049555;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:44,13:25,9:19,4
+chr3	197665269	.	G	A	0	PASS	DP=91;GPV=1;SPV=0.028535;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:41,15:5,2:36,13
+chr3	198103423	.	A	C	0	PASS	DP=33;GPV=1;SPV=0.018146;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:13,7:9,3:4,4
+chr4	21086	.	TA	T	0	PASS	DP=166;GPV=1;SPV=0.038694;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:94:76,18:34,10:42,8
+chr4	21124	.	C	T	0	PASS	DP=131;GPV=1;SPV=0.019434;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:57,15:16,6:41,9
+chr4	28967	.	C	T	0	PASS	DP=500;GPV=1;SPV=0.020359;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:267:236,31:115,17:121,14
+chr4	30599	.	C	T	0	PASS	DP=267;GPV=1;SPV=0.030157;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:110,15:57,6:53,9
+chr4	47344	.	G	T	0	PASS	DP=430;GPV=1;SPV=0.032683;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:235:209,26:108,11:101,15
+chr4	1152938	.	C	CT	0	PASS	DP=27;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:3,5:6,1
+chr4	1357096	.	C	G	0	PASS	DP=98;GPV=1;SPV=0.04248;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:42,11:17,5:25,6
+chr4	1424134	.	C	CT	0	PASS	DP=38;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:11,6:1,2
+chr4	1615502	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.00012864;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:6,9:1,2
+chr4	4076282	.	G	GTATGTA	0	PASS	DP=81;GPV=1;SPV=0.13283;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:28,4:14,1:14,3
+chr4	4857672	.	G	A	0	PASS	DP=95;GPV=1;SPV=0.023724;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:18,5:21,2
+chr4	5740470	.	CAA	C	0	PASS	DP=39;GPV=1;SPV=0.023166;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:7,2:7,3
+chr4	6067677	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.037705;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:22,6:7,3:15,3
+chr4	7362923	.	T	C	0	PASS	DP=59;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,4:5,2:11,2
+chr4	7525810	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:3,1:4,3
+chr4	7862415	.	C	G	0	PASS	DP=29;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,2:6,2:0,0
+chr4	8823593	.	CAAAAA	C	0	PASS	DP=43;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,6:2,5:7,1
+chr4	8842317	.	T	C	0	PASS	DP=23;GPV=1;SPV=0.002173;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:3,9:2,4:1,5
+chr4	9249263	.	G	C	0	PASS	DP=19;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr4	9710191	.	G	A	0	PASS	DP=103;GPV=1;SPV=2.0186e-09;SS=2;SSC=86;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:27,23:12,16:15,7
+chr4	10778181	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:12,3:15,1
+chr4	10953112	.	ATCTTTCTTTCTTTCTT	A	0	PASS	DP=61;GPV=1;SPV=0.0023163;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:15,7:4,2:11,5
+chr4	14436315	.	C	CAA	0	PASS	DP=56;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:16,7:13,4:3,3
+chr4	15790424	.	G	A	0	PASS	DP=126;GPV=1;SPV=0.0084712;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:63,8:35,4:28,4
+chr4	16004829	.	T	TTCTTTCTTTTTTC	0	PASS	DP=42;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,5:4,1:17,4
+chr4	16094108	.	GGAGAGAGAGAGAGAGA	G	0	PASS	DP=37;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,4:12,3:6,1
+chr4	16179788	.	T	TTATATATATATATATATGTGTATA	0	PASS	DP=56;GPV=1;SPV=0.040844;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:11,3:10,3
+chr4	16312513	.	CT	C	0	PASS	DP=59;GPV=1;SPV=0.017433;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:18,7:6,2
+chr4	17182251	.	TTG	T	0	PASS	DP=67;GPV=1;SPV=0.044315;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:15,2:14,5
+chr4	17440806	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.0047587;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,6:11,3:3,3
+chr4	17703014	.	C	G	0	PASS	DP=101;GPV=1;SPV=7.4469e-09;SS=2;SSC=81;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:29,24:14,11:15,13
+chr4	19226220	.	AAT	A	0	PASS	DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,9:3,2:7,7
+chr4	19543854	.	G	A	0	PASS	DP=82;GPV=1;SPV=1.7594e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:26,18:14,10:12,8
+chr4	19683119	.	C	A	0	PASS	DP=79;GPV=1;SPV=0.0011232;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:13,5:21,6
+chr4	20748560	.	T	A	0	PASS	DP=26;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:1,4:0,2:1,2
+chr4	22316714	.	T	C	0	PASS	DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:18,2:14,2
+chr4	22389501	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.0014573;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,17:6,11:10,6
+chr4	23724299	.	C	T	0	PASS	DP=99;GPV=1;SPV=0.018169;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:46,6:17,5:29,1
+chr4	23727998	.	T	TAAAA	0	PASS	DP=47;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:8,11:5,7:3,4
+chr4	24049324	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:14,2:14,2
+chr4	26210662	.	T	TC	0	PASS	DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:8,2:16,2
+chr4	26210686	.	C	CTTT	0	PASS	DP=41;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,2:0,1:4,1
+chr4	26793722	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,8:7,7:7,1
+chr4	27175793	.	CTTTT	C	0	PASS	DP=47;GPV=1;SPV=0.0059543;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,6:1,1:9,5
+chr4	27218850	.	A	AT	0	PASS	DP=80;GPV=1;SPV=0.0011791;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:25,7:6,2
+chr4	27808133	.	C	CTT	0	PASS	DP=38;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:8,8:5,2
+chr4	28359297	.	A	G	0	PASS	DP=85;GPV=1;SPV=0.00079295;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:18,6:16,4
+chr4	29872258	.	C	T	0	PASS	DP=76;GPV=1;SPV=4.1611e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,17:14,11:6,6
+chr4	31720292	.	G	GT	0	PASS	DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,4:1,2:3,2
+chr4	31798786	.	C	CGTGTGT	0	PASS	DP=63;GPV=1;SPV=0.0062769;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,13:12,10:10,3
+chr4	31861304	.	A	G	0	PASS	DP=78;GPV=1;SPV=0.0029048;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:37,11:17,7:20,4
+chr4	32090979	.	G	A	0	PASS	DP=98;GPV=1;SPV=6.109e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:41,16:25,9:16,7
+chr4	32185674	.	A	T	0	PASS	DP=106;GPV=1;SPV=0.002307;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:47,9:24,4:23,5
+chr4	32201646	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:6,3:4,3
+chr4	32703978	.	C	CA	0	PASS	DP=63;GPV=1;SPV=0.0014364;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:15,3:10,7
+chr4	33791174	.	G	C	0	PASS	DP=104;GPV=1;SPV=0.00019843;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:20,8:22,4
+chr4	35203275	.	A	C	0	PASS	DP=31;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,6:9,2:4,4
+chr4	36161793	.	CAAAA	C	0	PASS	DP=36;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,5:5,3:4,2
+chr4	38733519	.	GTGTTGGTGT	G	0	PASS	DP=55;GPV=1;SPV=0.046608;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:12,5:11,2
+chr4	39621686	.	CTTT	C	0	PASS	DP=48;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:12,8:10,7:2,1
+chr4	40579423	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:5,2:4,4
+chr4	40862856	.	CAA	C	0	PASS	DP=44;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,12:15,11:2,1
+chr4	43758090	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:8,2:14,2
+chr4	44556770	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:9,3:13,2
+chr4	45867458	.	G	GTGTATATATATATATA	0	PASS	DP=22;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,4:3,2:4,2
+chr4	46289907	.	ATT	A	0	PASS	DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:22,3:12,2
+chr4	48054636	.	T	G	0	PASS	DP=33;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:7,1:12,4
+chr4	48328708	.	T	A	0	PASS	DP=58;GPV=1;SPV=0.0087456;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:14,4:10,3
+chr4	48525196	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:6,4:7,6
+chr4	49092498	.	C	CTCCAT	0	PASS	DP=27;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:5,4:3,2:2,2
+chr4	49158430	.	C	A	0	PASS	DP=304;GPV=1;SPV=0.031269;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:165:141,24:84,16:57,8
+chr4	49160935	.	CA	C	0	PASS	DP=84;GPV=1;SPV=0.017397;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:39,15:19,6:20,9
+chr4	49165571	.	G	T	0	PASS	DP=215;GPV=1;SPV=0.018516;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:88,17:56,9:32,8
+chr4	49165572	.	G	A	0	PASS	DP=212;GPV=1;SPV=0.042337;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:103:88,15:56,7:32,8
+chr4	49166740	.	A	T	0	PASS	DP=126;GPV=1;SPV=0.020034;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:56,16:20,9:36,7
+chr4	49172846	.	C	T	0	PASS	DP=220;GPV=1;SPV=0.038903;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:95,11:59,6:36,5
+chr4	49203841	.	C	T	0	PASS	DP=100;GPV=1;SPV=0.0047291;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:48,14:24,9:24,5
+chr4	49265404	.	G	A	0	PASS	DP=231;GPV=1;SPV=0.011339;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:107,18:56,10:51,8
+chr4	49303883	.	A	C	0	PASS	DP=403;GPV=1;SPV=0.049703;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:217:183,34:57,17:126,17
+chr4	49322686	.	A	C	0	PASS	DP=183;GPV=1;SPV=0.028229;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:99:80,19:50,10:30,9
+chr4	49487962	.	T	C	0	PASS	DP=484;GPV=1;SPV=0.028327;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:254:214,40:132,28:82,12
+chr4	49489739	.	TA	T	0	PASS	DP=258;GPV=1;SPV=0.037715;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:109,22:77,18:32,4
+chr4	49496839	.	C	T	0	PASS	DP=157;GPV=1;SPV=0.033017;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:76:62,14:33,8:29,6
+chr4	49519551	.	CT	C	0	PASS	DP=115;GPV=1;SPV=0.011027;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:67:59,8:31,2:28,6
+chr4	49527442	.	G	A	0	PASS	DP=162;GPV=1;SPV=0.010246;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:84:63,20:39,15:24,5
+chr4	49529342	.	G	C	0	PASS	DP=592;GPV=1;SPV=0.0055449;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:317:277,40:165,24:112,16
+chr4	49533523	.	G	A	0	PASS	DP=145;GPV=1;SPV=0.046806;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:61,11:41,5:20,6
+chr4	49537433	.	C	G	0	PASS	DP=115;GPV=1;SPV=0.019956;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:46,16:22,12:24,4
+chr4	49542539	.	G	A	0	PASS	DP=427;GPV=1;SPV=0.0057894;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:201:173,28:108,19:65,9
+chr4	49555640	.	AG	A	0	PASS	DP=202;GPV=1;SPV=0.022795;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:86,18:50,14:36,4
+chr4	49575288	.	T	C	0	PASS	DP=830;GPV=1;SPV=0.0027971;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:443:393,50:222,14:171,36
+chr4	49586916	.	A	G	0	PASS	DP=79;GPV=1;SPV=0.068062;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:42,5:22,1:20,4
+chr4	49850379	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.037462;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:16,6:13,4
+chr4	49851921	.	A	C	0	PASS	DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,5:6,2
+chr4	49939383	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:30,4:0,0
+chr4	50038969	.	A	G	0	PASS	DP=81;GPV=1;SPV=0.033201;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:17,3:20,2
+chr4	50184328	.	C	G	0	PASS	DP=64;GPV=1;SPV=0.022285;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:7,1:19,4
+chr4	50313315	.	A	G	0	PASS	DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr4	50463062	.	G	C	0	PASS	DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,2:0,0
+chr4	51200019	.	T	C	0	PASS	DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:5,2:0,1
+chr4	51366296	.	T	A	0	PASS	DP=50;GPV=1;SPV=0.010902;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:21,7:1,1
+chr4	51482938	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:0,0:7,2
+chr4	55112523	.	ATT	A	0	PASS	DP=54;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:15,6:5,4
+chr4	55599562	.	C	A	0	PASS	DP=80;GPV=1;SPV=9.2297e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:20,14:11,8:9,6
+chr4	57004352	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.0038335;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:7,3:1,4
+chr4	57745313	.	C	T	0	PASS	DP=94;GPV=1;SPV=4.6766e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,17:11,9:22,8
+chr4	62365096	.	A	AAGAGAGAGAGAGAGAG	0	PASS	DP=58;GPV=1;SPV=0.00062679;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,12:2,6:12,6
+chr4	62386861	.	TAATTA	T	0	PASS	DP=64;GPV=1;SPV=0.047782;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,4:11,2:12,2
+chr4	62461367	.	G	GTA	0	PASS	DP=22;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:6,4:3,1
+chr4	63196055	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.047649;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:9,2:12,5
+chr4	65150951	.	CTCTTTCTT	C	0	PASS	DP=23;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:4,2:1,1:3,1
+chr4	65879955	.	G	T	0	PASS	DP=93;GPV=1;SPV=5.7369e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:19,6:18,9
+chr4	67908105	.	C	T	0	PASS	DP=77;GPV=1;SPV=2.2487e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,17:12,11:16,6
+chr4	68430719	.	C	A	0	PASS	DP=76;GPV=1;SPV=3.7488e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:19,16:9,10:10,6
+chr4	71724273	.	G	GT	0	PASS	DP=30;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,4:6,3:2,1
+chr4	72041131	.	C	T	0	PASS	DP=85;GPV=1;SPV=6.0035e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:12,6:17,6
+chr4	74589660	.	A	AAAGAAAAAGAAAGAAAGAAAG	0	PASS	DP=75;GPV=1;SPV=0.023057;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:26,11:14,7:12,4
+chr4	75109844	.	G	A	0	PASS	DP=51;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:3,2:2,1:1,1
+chr4	75132082	.	C	T	0	PASS	DP=98;GPV=1;SPV=0.025792;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:17,3:24,4
+chr4	75648366	.	A	C	0	PASS	DP=64;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:5,2:3,1:2,1
+chr4	76916700	.	C	T	0	PASS	DP=75;GPV=1;SPV=0.0097756;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:18,5:13,9
+chr4	76918370	.	C	G	0	PASS	DP=172;GPV=1;SPV=0.042657;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:80,13:29,7:51,6
+chr4	77797102	.	C	CA	0	PASS	DP=41;GPV=1;SPV=0.043236;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,6:5,5:5,1
+chr4	78930885	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.023736;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:18,11:11,4:7,7
+chr4	80729592	.	CT	C	0	PASS	DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:9,5:3,2
+chr4	83466706	.	T	G	0	PASS	DP=80;GPV=1;SPV=0.0011564;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:23,7:13,5
+chr4	83578938	.	T	TTTC	0	PASS	DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:2,1:21,3
+chr4	84635633	.	T	G	0	PASS	DP=66;GPV=1;SPV=0.10299;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:2,1:35,4
+chr4	84784885	.	TATATATAC	T	0	PASS	DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,7:10,2:2,5
+chr4	85570379	.	T	TTTC	0	PASS	DP=55;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:15,4:7,2:8,2
+chr4	86932059	.	G	A	0	PASS	DP=38;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:5,5:4,1:1,4
+chr4	87505725	.	T	G	0	PASS	DP=66;GPV=1;SPV=0.056777;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:11,1:18,3
+chr4	88231894	.	C	CTCTCTCTCTCTGTG	0	PASS	DP=41;GPV=1;SPV=0.021064;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:12,11:8,3:4,8
+chr4	91138278	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,7:5,2:0,5
+chr4	91879966	.	A	T	0	PASS	DP=81;GPV=1;SPV=3.0683e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:7,7:18,9
+chr4	94087635	.	C	G	0	PASS	DP=76;GPV=1;SPV=0.035616;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:14,2:21,3
+chr4	95130728	.	T	C	0	PASS	DP=53;GPV=1;SPV=0.036816;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,7:10,2:7,5
+chr4	98021197	.	T	C	0	PASS	DP=58;GPV=1;SPV=0.014547;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:14,5:6,5
+chr4	98308297	.	C	CTATATATATATATA	0	PASS	DP=32;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:7,5:4,1
+chr4	98651864	.	CTTT	C	0	PASS	DP=21;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:1,3:2,2
+chr4	98809849	.	T	C	0	PASS	DP=43;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,4:7,3:7,1
+chr4	99506685	.	T	C	0	PASS	DP=63;GPV=1;SPV=0.098889;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:12,1:20,3
+chr4	99580151	.	T	A	0	PASS	DP=56;GPV=1;SPV=1.6764e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:6,4:7,7
+chr4	99879928	.	CCTA	C	0	PASS	DP=58;GPV=1;SPV=0.011404;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:10,12:12,3
+chr4	100244880	.	T	A	0	PASS	DP=80;GPV=1;SPV=0.0077364;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:19,4:12,2
+chr4	100394409	.	G	T	0	PASS	DP=70;GPV=1;SPV=0.036308;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:14,5:17,3
+chr4	100864149	.	T	TCTGTTTTGGTACCAAAACCATG	0	PASS	DP=46;GPV=1;SPV=0.11667;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:20,3:10,2:10,1
+chr4	102104244	.	A	AT	0	PASS	DP=60;GPV=1;SPV=0.0060915;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:11,8:10,1
+chr4	102864425	.	G	A	0	PASS	DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:10,7:8,3
+chr4	104192187	.	AGTGTGTGT	A	0	PASS	DP=69;GPV=1;SPV=0.00042498;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,16:13,12:10,4
+chr4	104844854	.	C	T	0	PASS	DP=92;GPV=1;SPV=1.3642e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:28,21:14,15:14,6
+chr4	105621869	.	G	A	0	PASS	DP=79;GPV=1;SPV=2.8323e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:11,6:16,8
+chr4	108175384	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.044595;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:19,5:1,1
+chr4	109239396	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.2066;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:10,4:6,1:4,3
+chr4	109600286	.	G	T	0	PASS	DP=81;GPV=1;SPV=1.0945e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,20:11,13:11,7
+chr4	110333607	.	CT	C	0	PASS	DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:13,3:12,2
+chr4	111158096	.	A	T	0	PASS	DP=100;GPV=1;SPV=1.4098e-13;SS=2;SSC=128;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:17,29:9,14:8,15
+chr4	116499744	.	A	T	0	PASS	DP=68;GPV=1;SPV=0.081098;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:18,1:15,3
+chr4	118645727	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.0092391;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,14:7,3:12,11
+chr4	122130051	.	G	C	0	PASS	DP=87;GPV=1;SPV=2.6286e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:35,19:20,7:15,12
+chr4	122811152	.	C	A	0	PASS	DP=80;GPV=1;SPV=0.075047;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:28,5:16,4:12,1
+chr4	122811153	.	C	G	0	PASS	DP=78;GPV=1;SPV=0.065377;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:26,5:15,4:11,1
+chr4	122918612	.	A	G	0	PASS	DP=79;GPV=1;SPV=8.7554e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:23,13:14,10:9,3
+chr4	124870777	.	CTT	C	0	PASS	DP=36;GPV=1;SPV=0.0092505;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,5:2,2:8,3
+chr4	125372363	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.00052629;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,12:4,8:6,4
+chr4	125416368	.	AT	A	0	PASS	DP=66;GPV=1;SPV=0.00054114;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:14,5:6,3
+chr4	125814620	.	T	TAC	0	PASS	DP=66;GPV=1;SPV=0.030258;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:16,7:10,3
+chr4	126826572	.	G	GTATA	0	PASS	DP=24;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:6,8:6,7:0,1
+chr4	126826600	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:5,2:3,1:2,1
+chr4	128112466	.	A	AT	0	PASS	DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:3,3:3,2
+chr4	128166964	.	CTCTCTCTA	C	0	PASS	DP=42;GPV=1;SPV=0.0070686;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,6:3,4:10,2
+chr4	128569414	.	G	GTC	0	PASS	DP=64;GPV=1;SPV=0.026923;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,11:15,6:11,5
+chr4	130205019	.	C	A	0	PASS	DP=100;GPV=1;SPV=1.7469e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:31,26:16,13:15,13
+chr4	130270827	.	G	GT	0	PASS	DP=28;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:1,4:7,1
+chr4	130854009	.	T	A	0	PASS	DP=81;GPV=1;SPV=0.00013424;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:33,15:17,11:16,4
+chr4	131135835	.	G	GCACACA	0	PASS	DP=57;GPV=1;SPV=0.045915;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,10:10,8:11,2
+chr4	131740266	.	G	T	0	PASS	DP=38;GPV=1;SPV=0.004483;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:2,2:9,4
+chr4	132831138	.	G	T	0	PASS	DP=81;GPV=1;SPV=0.00029821;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:32,12:18,6:14,6
+chr4	132902637	.	A	G	0	PASS	DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:12,4:5,1
+chr4	133496249	.	TATATAC	T	0	PASS	DP=48;GPV=1;SPV=0.037594;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:8,3:10,1
+chr4	134641189	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.010272;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:15,7:10,3
+chr4	134956521	.	A	AT	0	PASS	DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:13,1:12,3
+chr4	137022669	.	G	GA	0	PASS	DP=65;GPV=1;SPV=0.040564;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:21,5:6,2
+chr4	138854401	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.22535;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:26,3:11,2:15,1
+chr4	138923840	.	A	C	0	PASS	DP=67;GPV=1;SPV=0.11029;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:4,2:2,1:2,1
+chr4	140614921	.	CA	C	0	PASS	DP=47;GPV=1;SPV=0.0095364;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,9:11,6:2,3
+chr4	140983742	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.0014575;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:11,4:10,4
+chr4	141119050	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.013909;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:6,1:14,4
+chr4	145215419	.	G	GTTTTTTTT	0	PASS	DP=33;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,4:5,3:8,1
+chr4	146765921	.	C	T	0	PASS	DP=96;GPV=1;SPV=7.0418e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:35,17:20,8:15,9
+chr4	147798761	.	CTCTCTCTCTCTCTCTCTCTCTATATATATATATATA	C	0	PASS	DP=21;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:2,6:0,3:2,3
+chr4	147867863	.	CA	C	0	PASS	DP=29;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,6:2,5:3,1
+chr4	149267825	.	G	A	0	PASS	DP=78;GPV=1;SPV=2.862e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:25,18:9,12:16,6
+chr4	150086512	.	T	A	0	PASS	DP=80;GPV=1;SPV=0.0064693;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:17,5:12,6
+chr4	150754542	.	AG	A	0	PASS	DP=31;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:5,3:7,2
+chr4	153163495	.	C	A	0	PASS	DP=34;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:4,8:2,2:2,6
+chr4	153456166	.	G	GAA	0	PASS	DP=72;GPV=1;SPV=0.11527;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:45,6:24,2:21,4
+chr4	153895592	.	G	GTTT	0	PASS	DP=17;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,2:5,2:0,0
+chr4	155173126	.	A	G	0	PASS	DP=78;GPV=1;SPV=0.031711;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:19,2:20,4
+chr4	155982067	.	G	A	0	PASS	DP=83;GPV=1;SPV=4.2063e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:13,10:18,5
+chr4	157669914	.	T	A	0	PASS	DP=92;GPV=1;SPV=1.0479e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:34,17:14,8:20,9
+chr4	158916630	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:21,5:8,4:13,1
+chr4	158916631	.	G	A	0	PASS	DP=71;GPV=1;SPV=0.074336;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,5:8,4:14,1
+chr4	159005221	.	C	CA	0	PASS	DP=35;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:6,6:5,1
+chr4	159430345	.	C	T	0	PASS	DP=48;GPV=1;SPV=0.00029985;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,10:6,5:8,5
+chr4	160360770	.	C	CTT	0	PASS	DP=34;GPV=1;SPV=0.0025584;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:5,5:3,5
+chr4	161052263	.	C	CTCTCTCTA	0	PASS	DP=19;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,2:2,1:1,1
+chr4	161186214	.	A	T	0	PASS	DP=80;GPV=1;SPV=8.3642e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:32,16:18,6:14,10
+chr4	161342541	.	TTTATGTTATGTTATG	T	0	PASS	DP=47;GPV=1;SPV=0.043779;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:7,3:8,4
+chr4	162351929	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:3,1:2,3
+chr4	162485398	.	GA	G	0	PASS	DP=43;GPV=1;SPV=0.0014491;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:11,3:3,6
+chr4	162657510	.	AGAC	A	0	PASS	DP=52;GPV=1;SPV=0.056049;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,5:16,4:8,1
+chr4	162915733	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.00047367;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:22,5:9,6
+chr4	163199042	.	A	T	0	PASS	DP=82;GPV=1;SPV=2.4696e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:10,8:15,8
+chr4	163223224	.	C	CA	0	PASS	DP=72;GPV=1;SPV=0.031154;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:22,2:10,3
+chr4	164497765	.	G	GAA	0	PASS	DP=50;GPV=1;SPV=0.0037259;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,14:8,11:6,3
+chr4	165014989	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,5:4,3:8,2
+chr4	166363782	.	C	T	0	PASS	DP=76;GPV=1;SPV=9.0495e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:22,18:12,10:10,8
+chr4	166665954	.	A	AATATATATG	0	PASS	DP=57;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:3,8:0,6:3,2
+chr4	166666013	.	T	TA	0	PASS	DP=69;GPV=1;SPV=0.1172;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:20,3:20,2
+chr4	166666014	.	G	T	0	PASS	DP=70;GPV=1;SPV=0.10871;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:40,5:21,3:19,2
+chr4	167109021	.	A	T	0	PASS	DP=40;GPV=1;SPV=0.021089;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:15,13:3,2:12,11
+chr4	167975896	.	A	G	0	PASS	DP=75;GPV=1;SPV=9.4913e-08;SS=2;SSC=70;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:18,18:9,9:9,9
+chr4	171518253	.	CT	C	0	PASS	DP=74;GPV=1;SPV=0.017274;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:15,3:14,2
+chr4	171518255	.	A	G	0	PASS	DP=70;GPV=1;SPV=0.0069114;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:13,3:13,3
+chr4	171656936	.	G	GTA	0	PASS	DP=28;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,5:5,4:0,1
+chr4	173754359	.	G	A	0	PASS	DP=89;GPV=1;SPV=0.0033601;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:25,7:10,7
+chr4	174859389	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.013587;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:7,3:7,5
+chr4	174862643	.	A	ATGTGTGTG	0	PASS	DP=48;GPV=1;SPV=0.021726;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,9:11,7:4,2
+chr4	176076213	.	TA	T	0	PASS	DP=49;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:12,4:8,3:4,1
+chr4	176421497	.	A	AT	0	PASS	DP=75;GPV=1;SPV=6.6461e-05;SS=2;SSC=41;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,15:10,9:18,6
+chr4	177498550	.	G	GATATATATATATATATATAT	0	PASS	DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:13,2:2,2
+chr4	177885341	.	C	CAAA	0	PASS	DP=43;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,9:4,6:0,3
+chr4	179122135	.	T	C	0	PASS	DP=72;GPV=1;SPV=0.0032257;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:29,8:15,5:14,3
+chr4	179566552	.	C	CTTTTTTTT	0	PASS	DP=31;GPV=1;SPV=0.0067977;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:4,2:5,4
+chr4	180439431	.	T	TTA	0	PASS	DP=49;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:4,2:1,1:3,1
+chr4	183407768	.	CTT	C	0	PASS	DP=52;GPV=1;SPV=0.0097931;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,14:7,5:11,9
+chr4	183874991	.	A	G	0	PASS	DP=22;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,6:4,3:1,3
+chr4	184133165	.	A	T	0	PASS	DP=73;GPV=1;SPV=0.011528;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:13,7:10,6:3,1
+chr4	185584163	.	GC	G	0	PASS	DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,10:8,9:5,1
+chr4	185874841	.	G	GC	0	PASS	DP=69;GPV=1;SPV=0.024131;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:14,4:18,6
+chr4	185874842	.	G	A	0	PASS	DP=59;GPV=1;SPV=0.012735;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:14,4:10,6
+chr4	185985229	.	TTTTC	T	0	PASS	DP=54;GPV=1;SPV=0.045915;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,10:6,1:15,9
+chr4	186540733	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:8,3:12,3
+chr4	187466874	.	G	T	0	PASS	DP=83;GPV=1;SPV=0.079813;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,5:19,3:13,2
+chr4	187652621	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.014141;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,8:6,1
+chr4	187901083	.	G	T	0	PASS	DP=68;GPV=1;SPV=0.00012624;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:10,4:12,7
+chr4	188246179	.	C	T	0	PASS	DP=82;GPV=1;SPV=3.46e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:16,10:14,5
+chr4	188270840	.	A	AGCC	0	PASS	DP=43;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,5:10,1:6,4
+chr4	188659313	.	G	A	0	PASS	DP=135;GPV=1;SPV=9.4727e-10;SS=2;SSC=90;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:42,26:20,9:22,17
+chr4	188765953	.	CA	C	0	PASS	DP=52;GPV=1;SPV=0.0031851;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,12:12,10:6,2
+chr5	110378	.	T	C	0	PASS	DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:9,4:7,1
+chr5	302652	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.007417;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,15:13,11:5,4
+chr5	727404	.	C	T	0	PASS	DP=34;GPV=1;SPV=0.009628;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,10:5,6:5,4
+chr5	1047356	.	ATGAG	A	0	PASS	DP=42;GPV=1;SPV=0.0033308;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,13:7,4:6,9
+chr5	1238415	.	G	GA	0	PASS	DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:13,2:9,2
+chr5	2124221	.	G	A	0	PASS	DP=91;GPV=1;SPV=6.3214e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:9,9:26,5
+chr5	2406565	.	CT	C	0	PASS	DP=48;GPV=1;SPV=0.0062506;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:6,2:7,3
+chr5	3961564	.	T	C	0	PASS	DP=85;GPV=1;SPV=3.0255e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:11,10:19,4
+chr5	4064997	.	A	C	0	PASS	DP=81;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:36:0,2:0,2:0,0
+chr5	5610645	.	A	G	0	PASS	DP=54;GPV=1;SPV=0.16368;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:27,3:4,1:23,2
+chr5	5816583	.	ATG	A	0	PASS	DP=27;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,10:6,2:2,8
+chr5	7372251	.	A	C	0	PASS	DP=44;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:8,4:14,1
+chr5	8775499	.	CTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:1,4:7,2
+chr5	9186029	.	T	G	0	PASS	DP=86;GPV=1;SPV=3.4522e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,19:14,8:16,11
+chr5	9581458	.	C	T	0	PASS	DP=78;GPV=1;SPV=1.4522e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:26,15:10,4:16,11
+chr5	9761414	.	GA	G	0	PASS	DP=55;GPV=1;SPV=0.021052;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:20,5:6,2
+chr5	10733208	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.012681;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:11,10:2,3:9,7
+chr5	13816555	.	A	G	0	PASS	DP=51;GPV=1;SPV=0.0023514;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:10,9:10,1
+chr5	14609621	.	ATTTTTTTTTT	A	0	PASS	DP=30;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:6,4:1,3
+chr5	14878438	.	ATTT	A	0	PASS	DP=52;GPV=1;SPV=0.0014893;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:13,11:7,9:6,2
+chr5	15089076	.	G	T	0	PASS	DP=81;GPV=1;SPV=0.00062483;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:16,6:13,3
+chr5	16242555	.	T	TA	0	PASS	DP=56;GPV=1;SPV=0.0015751;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,9:17,7:3,2
+chr5	16411124	.	G	A	0	PASS	DP=104;GPV=1;SPV=2.1466e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:14,7:22,6
+chr5	16818410	.	G	GTATATATATATA	0	PASS	DP=44;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:2,2:0,0:2,2
+chr5	16942100	.	CTT	C	0	PASS	DP=31;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:9,3:5,1
+chr5	17113048	.	CA	C	0	PASS	DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:4,5:4,1
+chr5	19743921	.	CAAAAAA	C	0	PASS	DP=40;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,7:7,6:6,1
+chr5	20356751	.	C	A	0	PASS	DP=60;GPV=1;SPV=0.027967;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:11,7:14,1
+chr5	20734951	.	C	T	0	PASS	DP=112;GPV=1;SPV=0.020776;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:50,8:21,6:29,2
+chr5	20838145	.	A	C	0	PASS	DP=36;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:2,2:1,1:1,1
+chr5	21222942	.	T	TTTTC	0	PASS	DP=62;GPV=1;SPV=0.023954;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,5:8,3:17,2
+chr5	21265262	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.00076085;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:17,7:11,3
+chr5	21478808	.	A	G	0	PASS	DP=125;GPV=1;SPV=0.0016094;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:48,23:26,20:22,3
+chr5	21735669	.	A	ATTT	0	PASS	DP=43;GPV=1;SPV=0.046549;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,6:9,4:6,2
+chr5	22460713	.	A	ATTTTTT	0	PASS	DP=25;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:6,5:3,1:3,4
+chr5	22470415	.	T	A	0	PASS	DP=63;GPV=1;SPV=0.016905;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:26,9:9,8:17,1
+chr5	25997143	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.012627;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:20,5:10,3
+chr5	26058682	.	A	ATT	0	PASS	DP=48;GPV=1;SPV=0.011327;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:11,5:5,4
+chr5	26442455	.	T	TGATAGATA	0	PASS	DP=61;GPV=1;SPV=0.0067906;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:21,16:8,7:13,9
+chr5	27790901	.	C	T	0	PASS	DP=35;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:10,2:5,4
+chr5	27835934	.	A	C	0	PASS	DP=25;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,2:3,1:2,1
+chr5	28251874	.	GAAAGAAAA	G	0	PASS	DP=63;GPV=1;SPV=0.00011781;SS=2;SSC=39;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,9:12,8:4,1
+chr5	28251886	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.0057854;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,9:10,8:3,1
+chr5	30358840	.	GAA	G	0	PASS	DP=24;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,5:2,4:0,1
+chr5	30922728	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:6,2:2,1:4,1
+chr5	31199458	.	GTA	G	0	PASS	DP=44;GPV=1;SPV=0.10502;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,3:5,2:10,1
+chr5	32158132	.	T	TACACACAC	0	PASS	DP=41;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:2,6:2,5:0,1
+chr5	34189559	.	C	T	0	PASS	DP=445;GPV=1;SPV=0.035198;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:224:189,35:127,20:62,15
+chr5	38395421	.	A	T	0	PASS	DP=84;GPV=1;SPV=7.3814e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:26,19:15,8:11,11
+chr5	42069239	.	T	TTTC	0	PASS	DP=60;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:18,8:9,3:9,5
+chr5	42579149	.	GAT	G	0	PASS	DP=69;GPV=1;SPV=0.015826;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:20,9:8,3:12,6
+chr5	42728250	.	TTCTCTCTCTCTCTCTC	T	0	PASS	DP=28;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,7:5,5:6,2
+chr5	44685791	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,4:9,2:9,2
+chr5	46663721	.	G	C	0	PASS	DP=85;GPV=1;SPV=0.015572;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:35,11:10,2:25,9
+chr5	46972870	.	A	C	0	PASS	DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:14,3:10,1
+chr5	46985293	.	T	C	0	PASS	DP=66;GPV=1;SPV=0.081731;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:32,4:32,4:0,0
+chr5	47002249	.	T	A	0	PASS	DP=90;GPV=1;SPV=0.044762;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:34,6:7,1
+chr5	47073942	.	G	C	0	PASS	DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:10,4:0,0
+chr5	47103778	.	A	T	0	PASS	DP=142;GPV=1;SPV=7.8805e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:64,15:31,6:33,9
+chr5	48226543	.	A	G	0	PASS	DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr5	50140189	.	G	T	0	PASS	DP=419;GPV=1;SPV=0.0033206;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:201:167,34:99,30:68,4
+chr5	50143487	.	G	T	0	PASS	DP=692;GPV=1;SPV=0.043168;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:379:333,42:181,23:152,19
+chr5	50414528	.	C	CAA	0	PASS	DP=40;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:10,3:3,1
+chr5	51895903	.	G	A	0	PASS	DP=82;GPV=1;SPV=0.00022582;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:35,15:18,6:17,9
+chr5	52891262	.	C	CTT	0	PASS	DP=49;GPV=1;SPV=0.025265;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:13,9:8,7:5,2
+chr5	53271173	.	C	T	0	PASS	DP=95;GPV=1;SPV=2.3788e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:29,26:19,13:10,13
+chr5	53492812	.	ATTATATATATAATATATGTATATAATT	A	0	PASS	DP=52;GPV=1;SPV=0.030757;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:8,4:10,2
+chr5	53993046	.	C	CA	0	PASS	DP=79;GPV=1;SPV=0.022271;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:33,5:13,3:20,2
+chr5	54935204	.	T	G	0	PASS	DP=52;GPV=1;SPV=0.010099;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:6,2:10,5
+chr5	56166165	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.016993;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,2:4,2
+chr5	58350170	.	A	ATG	0	PASS	DP=29;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,5:4,4:8,1
+chr5	60863625	.	C	T	0	PASS	DP=80;GPV=1;SPV=5.5913e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,13:14,10:14,3
+chr5	61569371	.	G	T	0	PASS	DP=84;GPV=1;SPV=1.1442e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:10,11:10,5
+chr5	62470816	.	CTTTTT	C	0	PASS	DP=33;GPV=1;SPV=0.00043849;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,10:3,8:4,2
+chr5	63823958	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.048842;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:26,5:17,3:9,2
+chr5	64606043	.	G	T	0	PASS	DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:16,6:5,4:11,2
+chr5	64878470	.	TA	T	0	PASS	DP=18;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:3,5:2,4:1,1
+chr5	65004936	.	T	C	0	PASS	DP=29;GPV=1;SPV=0.0036482;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:6,13:1,6:5,7
+chr5	65321708	.	CTTTT	C	0	PASS	DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:5,6:1,1:4,5
+chr5	66522544	.	TA	T	0	PASS	DP=75;GPV=1;SPV=0.02849;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:18,1:13,9
+chr5	69631390	.	G	C	0	PASS	DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:18,4:0,0
+chr5	69911442	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.049167;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:43,5:42,4:1,1
+chr5	70339524	.	C	T	0	PASS	DP=151;GPV=1;SPV=0.019787;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:74,9:44,1:30,8
+chr5	70378692	.	G	C	0	PASS	DP=76;GPV=1;SPV=0.0049019;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:15,7:10,6
+chr5	70778416	.	T	G	0	PASS	DP=167;GPV=1;SPV=0.03043;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:76,16:38,7:38,9
+chr5	71116274	.	CA	C	0	PASS	DP=120;GPV=1;SPV=0.00018069;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:33,20:27,17:6,3
+chr5	71175667	.	A	G	0	PASS	DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:6,2:0,0
+chr5	71618544	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:5,3:12,1
+chr5	71721271	.	A	G	0	PASS	DP=73;GPV=1;SPV=0.03726;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:15,7:6,5:9,2
+chr5	72102894	.	C	A	0	PASS	DP=38;GPV=1;SPV=0.37564;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:12,4:3,1:9,3
+chr5	77378046	.	AC	A	0	PASS	DP=70;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,4:9,1:9,3
+chr5	80692235	.	CAT	C	0	PASS	DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:11,3:4,1
+chr5	80693224	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,2:6,2
+chr5	81293248	.	C	G	0	PASS	DP=51;GPV=1;SPV=0.035434;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,3:8,1
+chr5	82929000	.	C	CTTT	0	PASS	DP=52;GPV=1;SPV=0.043209;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,8:10,7:8,1
+chr5	83350869	.	G	T	0	PASS	DP=87;GPV=1;SPV=0.023022;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:15,1:22,4
+chr5	83650632	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,8:11,7:2,1
+chr5	83737041	.	T	TAGAGAG	0	PASS	DP=30;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,4:5,2:7,2
+chr5	83764973	.	A	T	0	PASS	DP=73;GPV=1;SPV=2.8066e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:23,19:8,13:15,6
+chr5	84522919	.	A	T	0	PASS	DP=86;GPV=1;SPV=0.0019161;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:14,5:16,2
+chr5	85396299	.	C	T	0	PASS	DP=90;GPV=1;SPV=3.295e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,13:14,3:11,10
+chr5	85425650	.	C	T	0	PASS	DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:31,17:13,10:18,7
+chr5	89176455	.	A	G	0	PASS	DP=80;GPV=1;SPV=1.4111e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:11,6:11,9
+chr5	89187090	.	A	T	0	PASS	DP=62;GPV=1;SPV=0.011977;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:25,6:13,2:12,4
+chr5	89414231	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.00059141;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:36,15:19,8:17,7
+chr5	95078039	.	C	CATGTATCTGTCT	0	PASS	DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:11,2:5,2
+chr5	97577406	.	C	T	0	PASS	DP=81;GPV=1;SPV=2.9514e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:30,16:17,5:13,11
+chr5	97629863	.	T	A	0	PASS	DP=62;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:27,4:16,3:11,1
+chr5	97629864	.	A	C	0	PASS	DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:19,3:11,1
+chr5	98138582	.	C	A	0	PASS	DP=41;GPV=1;SPV=0.0094148;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:6,4:5,6
+chr5	98756790	.	T	C	0	PASS	DP=86;GPV=1;SPV=7.6074e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:16,14:11,5
+chr5	98864517	.	CAA	C	0	PASS	DP=30;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:10,7:3,1
+chr5	99225249	.	G	GC	0	PASS	DP=84;GPV=1;SPV=0.010345;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:41,8:25,3:16,5
+chr5	99402438	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.00039484;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:11,10:9,6
+chr5	99642003	.	C	T	0	PASS	DP=94;GPV=1;SPV=3.2141e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:33,27:22,17:11,10
+chr5	100493024	.	AAT	A	0	PASS	DP=34;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:6,3:5,1
+chr5	101547616	.	GTA	G	0	PASS	DP=25;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,5:6,3:2,2
+chr5	102779886	.	C	CATAT	0	PASS	DP=26;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:5,4:2,1
+chr5	103370179	.	C	CTATA	0	PASS	DP=50;GPV=1;SPV=0.0095459;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:2,11:2,5:0,6
+chr5	103820598	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:18,11:12,9:6,2
+chr5	104223378	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,4:5,2:4,2
+chr5	104667584	.	C	G	0	PASS	DP=40;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:9,4:8,1:1,3
+chr5	105902354	.	G	GT	0	PASS	DP=57;GPV=1;SPV=0.0048071;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,8:10,4:12,4
+chr5	106555754	.	A	T	0	PASS	DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:4,1:3,1
+chr5	107763997	.	T	G	0	PASS	DP=71;GPV=1;SPV=1.4899e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:18,20:9,8:9,12
+chr5	113187754	.	CAA	C	0	PASS	DP=33;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,10:5,9:2,1
+chr5	113346636	.	A	C	0	PASS	DP=74;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,5:13,1:11,4
+chr5	113735616	.	C	T	0	PASS	DP=72;GPV=1;SPV=0.039775;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:14,3:15,1
+chr5	113786209	.	CT	C	0	PASS	DP=26;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:3,4:4,3
+chr5	114504168	.	T	C	0	PASS	DP=85;GPV=1;SPV=0.049835;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:36,11:16,4:20,7
+chr5	115793449	.	CGTGT	C	0	PASS	DP=48;GPV=1;SPV=0.0062699;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:10,11:2,7:8,4
+chr5	116327605	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.14672;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:17,3:10,1:7,2
+chr5	116883195	.	G	GA	0	PASS	DP=23;GPV=1;SPV=0.42424;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,2:5,1:1,1
+chr5	117149034	.	C	A	0	PASS	DP=74;GPV=1;SPV=0.00020455;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:26,11:13,2:13,9
+chr5	118934272	.	T	TA	0	PASS	DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:7,4:6,1
+chr5	120516423	.	CA	C	0	PASS	DP=27;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:7,2:3,2
+chr5	121294570	.	TG	T	0	PASS	DP=58;GPV=1;SPV=0.16084;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,5:9,2:13,3
+chr5	121496862	.	T	TAC	0	PASS	DP=73;GPV=1;SPV=0.0039721;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,12:17,10:9,2
+chr5	122362993	.	A	AT	0	PASS	DP=56;GPV=1;SPV=0.0026611;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:22,9:14,4:8,5
+chr5	122783083	.	C	T	0	PASS	DP=67;GPV=1;SPV=0.00090199;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:12,4:12,5
+chr5	125728450	.	G	T	0	PASS	DP=74;GPV=1;SPV=0.0059787;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:27,6:12,4:15,2
+chr5	128539884	.	T	TCA	0	PASS	DP=20;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:11:0,2:0,2:0,0
+chr5	128568884	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.0023815;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,9:1,8:2,1
+chr5	128760745	.	C	CA	0	PASS	DP=55;GPV=1;SPV=0.017137;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:15,9:6,5
+chr5	128863776	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:11,1:15,5
+chr5	131179474	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:7,2:4,1:3,1
+chr5	132433778	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.003085;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,10:11,8:3,2
+chr5	135530280	.	G	A	0	PASS	DP=99;GPV=1;SPV=3.256e-08;SS=2;SSC=74;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:30,23:13,16:17,7
+chr5	136936478	.	T	TTA	0	PASS	DP=42;GPV=1;SPV=0.034629;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:6,3:9,1
+chr5	137951209	.	C	CAA	0	PASS	DP=40;GPV=1;SPV=0.023812;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,7:10,6:6,1
+chr5	138309734	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:14,3:14,1
+chr5	138693351	.	CT	C	0	PASS	DP=43;GPV=1;SPV=0.044156;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:2,1:17,4
+chr5	139068673	.	AAG	A	0	PASS	DP=39;GPV=1;SPV=0.010266;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:6,5:7,6
+chr5	140960717	.	T	G	0	PASS	DP=69;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:22,4:11,2:11,2
+chr5	141271696	.	G	A	0	PASS	DP=87;GPV=1;SPV=1.9441e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:31,15:16,9:15,6
+chr5	141315300	.	C	A	0	PASS	DP=73;GPV=1;SPV=0.0066622;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:15,6:6,3:9,3
+chr5	141455860	.	ATTAT	A	0	PASS	DP=69;GPV=1;SPV=0.0051599;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,12:11,10:10,2
+chr5	142608583	.	TACAC	T	0	PASS	DP=25;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:3,3:0,1:3,2
+chr5	144047478	.	G	A	0	PASS	DP=89;GPV=1;SPV=2e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:24,17:11,13:13,4
+chr5	145421522	.	G	C	0	PASS	DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:13,1:16,3
+chr5	146086024	.	CT	C	0	PASS	DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:18,3:7,2
+chr5	146131496	.	T	G	0	PASS	DP=72;GPV=1;SPV=0.029826;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:17,9:11,3
+chr5	146438006	.	A	T	0	PASS	DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,4:2,2:4,2
+chr5	146708356	.	C	CA	0	PASS	DP=54;GPV=1;SPV=0.011315;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,10:11,6:5,4
+chr5	146875502	.	T	C	0	PASS	DP=74;GPV=1;SPV=1.6503e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:19,19:6,8:13,11
+chr5	147949033	.	GATGTAAATATATATACATTATATATACA	G	0	PASS	DP=73;GPV=1;SPV=0.0065453;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:16,2:13,8
+chr5	148979723	.	G	A	0	PASS	DP=84;GPV=1;SPV=1.0446e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:10,11:13,4
+chr5	149900375	.	G	GTATATATATA	0	PASS	DP=23;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:6,5:3,2:3,3
+chr5	149920938	.	G	A	0	PASS	DP=45;GPV=1;SPV=0.022541;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:12,3:2,1
+chr5	152298973	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.00040366;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:13,8:16,3
+chr5	154219834	.	T	TCACACACACACACACA	0	PASS	DP=42;GPV=1;SPV=0.056428;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:12,2:9,4
+chr5	156239399	.	C	CAAAA	0	PASS	DP=30;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:5,5:2,4:3,1
+chr5	157111969	.	T	A	0	PASS	DP=69;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:3,3:0,2:3,1
+chr5	157182105	.	A	G	0	PASS	DP=88;GPV=1;SPV=1.799e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,17:16,8:12,9
+chr5	157219113	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,7:9,5:6,2
+chr5	157476166	.	C	T	0	PASS	DP=80;GPV=1;SPV=8.2498e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:22,16:14,9:8,7
+chr5	158956754	.	C	CT	0	PASS	DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:9,5:2,1
+chr5	159227875	.	CTTCTTTCTTTCT	C	0	PASS	DP=49;GPV=1;SPV=0.030593;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:1,1:18,7
+chr5	161336814	.	C	CAA	0	PASS	DP=72;GPV=1;SPV=0.0013479;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,11:12,8:9,3
+chr5	161509760	.	C	T	0	PASS	DP=72;GPV=1;SPV=1.1149e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:21,19:11,9:10,10
+chr5	161829603	.	AAAAAAAACAAAAAAAAAAAAAC	A	0	PASS	DP=51;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,5:8,4:12,1
+chr5	164130085	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,9:1,6:3,3
+chr5	164995450	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.042605;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:8,5:13,4
+chr5	165021986	.	AATAT	A	0	PASS	DP=30;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:10,4:3,1
+chr5	166028483	.	CT	C	0	PASS	DP=58;GPV=1;SPV=0.0014035;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:6,9:18,3
+chr5	167872316	.	A	T	0	PASS	DP=29;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:17:0,2:0,1:0,1
+chr5	168703226	.	T	TTG	0	PASS	DP=33;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,4:7,2:7,2
+chr5	168714743	.	G	A	0	PASS	DP=87;GPV=1;SPV=2.2297e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,17:12,9:16,8
+chr5	169137303	.	CAT	C	0	PASS	DP=26;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,2:4,1:0,1
+chr5	169189527	.	GATATATATATATAT	G	0	PASS	DP=33;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,4:8,3:3,1
+chr5	171562612	.	T	TATATAA	0	PASS	DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:6,3:7,3
+chr5	171562655	.	T	A	0	PASS	DP=25;GPV=1;SPV=0.0047113;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:4,8:1,3:3,5
+chr5	171690066	.	C	CATAG	0	PASS	DP=68;GPV=1;SPV=0.05944;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:30,5:16,2:14,3
+chr5	172525610	.	C	T	0	PASS	DP=84;GPV=1;SPV=1.2257e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:25,23:17,10:8,13
+chr5	172804549	.	C	CA	0	PASS	DP=32;GPV=1;SPV=0.16126;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:13,5:8,4:5,1
+chr5	174722840	.	G	GT	0	PASS	DP=76;GPV=1;SPV=0.00019233;SS=2;SSC=37;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:15,8:10,2
+chr5	175386375	.	G	A	0	PASS	DP=107;GPV=1;SPV=8.6921e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:32,24:19,8:13,16
+chr5	175510173	.	A	G	0	PASS	DP=76;GPV=1;SPV=0.0049761;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:35,9:22,5:13,4
+chr5	176014838	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:1,0:17,4
+chr5	177499487	.	CA	C	0	PASS	DP=51;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:12,14:6,10:6,4
+chr5	177872471	.	A	G	0	PASS	DP=79;GPV=1;SPV=0.033452;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:16,2:15,9
+chr5	177874892	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.0050863;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:17,1:15,9
+chr5	177967786	.	T	C	0	PASS	DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:1,1:9,4
+chr5	178041678	.	G	T	0	PASS	DP=85;GPV=1;SPV=2.5449e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:15,9:9,5
+chr5	178821674	.	C	CTTTT	0	PASS	DP=54;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:19,13:7,6:12,7
+chr5	179441206	.	G	A	0	PASS	DP=85;GPV=1;SPV=0.0012784;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:20,3:11,5
+chr6	310904	.	T	A	0	PASS	DP=141;GPV=1;SPV=1.9531e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:52,21:25,13:27,8
+chr6	1905414	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.01696;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,6:1,4:10,2
+chr6	2920154	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.0045877;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,7:3,6:2,1
+chr6	3234823	.	G	GTTCT	0	PASS	DP=59;GPV=1;SPV=0.044773;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,5:8,3:7,2
+chr6	3925951	.	A	G	0	PASS	DP=76;GPV=1;SPV=0.039892;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:24,9:15,2:9,7
+chr6	4432917	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,4:0,0:0,4
+chr6	5444515	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.044118;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:2,2:1,1:1,1
+chr6	5897460	.	C	G	0	PASS	DP=39;GPV=1;SPV=0.0019985;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:6,8:3,1:3,7
+chr6	6304860	.	CA	C	0	PASS	DP=43;GPV=1;SPV=0.00022182;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:10,16:7,13:3,3
+chr6	8595870	.	A	T	0	PASS	DP=73;GPV=1;SPV=0.018687;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:6,3:4,1:2,2
+chr6	8853701	.	G	C	0	PASS	DP=26;GPV=1;SPV=0.0044376;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:2,6:1,5:1,1
+chr6	9013037	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.0035042;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:12:3,9:0,2:3,7
+chr6	10047852	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.004794;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:3,5:0,3:3,2
+chr6	10474352	.	A	C	0	PASS	DP=64;GPV=1;SPV=0.00079857;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:4,6:2,2:2,4
+chr6	14582704	.	A	C	0	PASS	DP=63;GPV=1;SPV=0.0026065;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:11,2:8,4
+chr6	15415603	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:2,4:7,2
+chr6	18670753	.	T	TCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTC	0	PASS	DP=22;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:0,4:0,0:0,4
+chr6	19182361	.	A	G	0	PASS	DP=60;GPV=1;SPV=3.2061e-09;SS=2;SSC=84;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:7,15:3,7:4,8
+chr6	21784591	.	ATATATAT	A	0	PASS	DP=36;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:3,2:2,1:1,1
+chr6	26453583	.	T	A	0	PASS	DP=68;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:2,3:1,2:1,1
+chr6	26884833	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.00090694;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:3,4:4,3
+chr6	26884873	.	T	TCCC	0	PASS	DP=53;GPV=1;SPV=0.019122;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,1:4,3
+chr6	27208925	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.005895;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,5:2,4:6,1
+chr6	27676094	.	G	GT	0	PASS	DP=38;GPV=1;SPV=0.006706;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:6,2:2,2
+chr6	27959755	.	T	C	0	PASS	DP=51;GPV=1;SPV=4.0518e-10;SS=2;SSC=93;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:21:4,17:3,8:1,9
+chr6	29980519	.	A	T	0	PASS	DP=68;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:5,3:1,1:4,2
+chr6	32067094	.	AATG	A	0	PASS	DP=66;GPV=1;SPV=0.095186;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:24,2:13,3
+chr6	32242530	.	C	T	0	PASS	DP=55;GPV=1;SPV=0.028;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:10,2:9,2
+chr6	32415088	.	TA	T	0	PASS	DP=100;GPV=1;SPV=0.03684;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:48,8:23,1:25,7
+chr6	33526158	.	TA	T	0	PASS	DP=66;GPV=1;SPV=0.10242;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:27,3:7,1
+chr6	35802004	.	C	T	0	PASS	DP=74;GPV=1;SPV=2.2053e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:15,6:10,9
+chr6	37402786	.	T	G	0	PASS	DP=79;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:3,3:0,2:3,1
+chr6	38289261	.	C	A	0	PASS	DP=84;GPV=1;SPV=3.6033e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:34,19:18,7:16,12
+chr6	40113950	.	T	G	0	PASS	DP=61;GPV=1;SPV=0.12713;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:23,3:15,3
+chr6	40113951	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.11483;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:24,3:14,3
+chr6	42716612	.	G	GT	0	PASS	DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:10,3:5,1
+chr6	48953532	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.0032221;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:4,4:2,3
+chr6	50560396	.	CTT	C	0	PASS	DP=35;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,7:6,6:4,1
+chr6	51058706	.	AT	A	0	PASS	DP=39;GPV=1;SPV=0.01188;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:14,6:4,2:10,4
+chr6	51330108	.	C	G	0	PASS	DP=62;GPV=1;SPV=0.0023062;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:5,6:14,3
+chr6	52838757	.	A	G	0	PASS	DP=96;GPV=1;SPV=9.5945e-10;SS=2;SSC=90;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:23,23:10,13:13,10
+chr6	53226342	.	TTTTATA	T	0	PASS	DP=27;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:3,3:10,1
+chr6	54142918	.	C	CA	0	PASS	DP=81;GPV=1;SPV=0.0034605;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,9:10,5:18,4
+chr6	54533007	.	C	A	0	PASS	DP=69;GPV=1;SPV=9.9748e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:20,21:11,6:9,15
+chr6	55043370	.	T	TG	0	PASS	DP=72;GPV=1;SPV=0.018314;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:35,7:13,2:22,5
+chr6	55220155	.	A	G	0	PASS	DP=87;GPV=1;SPV=5.1525e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:28,21:15,10:13,11
+chr6	55567296	.	C	T	0	PASS	DP=86;GPV=1;SPV=1.3189e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:30,23:13,9:17,14
+chr6	56872833	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr6	57371143	.	C	T	0	PASS	DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:3,3:18,1
+chr6	57439404	.	GTTT	G	0	PASS	DP=24;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,4:6,3:3,1
+chr6	57722372	.	A	T	0	PASS	DP=89;GPV=1;SPV=0.01724;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:47,8:32,6:15,2
+chr6	58233071	.	CT	C	0	PASS	DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:6,2:9,4
+chr6	58450569	.	G	A	0	PASS	DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:20,4:0,0
+chr6	58555199	.	T	A	0	PASS	DP=183;GPV=1;SPV=0.03374;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:80,12:27,2:53,10
+chr6	59563748	.	G	A	0	PASS	DP=464;GPV=1;SPV=0.013039;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:255:229,26:51,9:178,17
+chr6	59623233	.	C	A	0	PASS	DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:9,4:0,0
+chr6	59781933	.	A	G	0	PASS	DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:28,2:2,2
+chr6	60287954	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.062937;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:4,5:2,1:2,4
+chr6	61245245	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.0017223;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:15,5:19,5
+chr6	63242386	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:18,6:11,4:7,2
+chr6	65492336	.	C	G	0	PASS	DP=76;GPV=1;SPV=0.011201;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:31,9:19,5:12,4
+chr6	65730800	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.053889;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:16,2:15,2
+chr6	65737373	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.035086;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,6:11,3:11,3
+chr6	65737415	.	T	TATAC	0	PASS	DP=58;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,4:12,2:16,2
+chr6	67213948	.	GATAT	G	0	PASS	DP=60;GPV=1;SPV=0.060034;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,4:9,2:15,2
+chr6	68471407	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.065934;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:2,2:2,1:0,1
+chr6	70113842	.	CTTT	C	0	PASS	DP=27;GPV=1;SPV=0.066203;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:8,5:3,2
+chr6	70831938	.	A	T	0	PASS	DP=80;GPV=1;SPV=0.00070294;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:21,4:8,5
+chr6	72549326	.	A	G	0	PASS	DP=77;GPV=1;SPV=0.0084228;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:36,8:18,4:18,4
+chr6	72941373	.	TTTCCTCC	T	0	PASS	DP=33;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:4,2:0,0:4,2
+chr6	73034859	.	T	A	0	PASS	DP=51;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:15,3:11,1
+chr6	73573302	.	G	A	0	PASS	DP=85;GPV=1;SPV=1.6753e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,18:9,11:14,7
+chr6	75046689	.	A	C	0	PASS	DP=43;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:5,2:2,1:3,1
+chr6	76557631	.	A	T	0	PASS	DP=78;GPV=1;SPV=0.051748;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:16,1:18,3
+chr6	77485738	.	ATC	A	0	PASS	DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:12,1:10,3
+chr6	78462066	.	T	A	0	PASS	DP=74;GPV=1;SPV=3.0868e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:21,11:15,8:6,3
+chr6	80055046	.	G	A	0	PASS	DP=73;GPV=1;SPV=1.6056e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:23,22:12,10:11,12
+chr6	84111838	.	C	T	0	PASS	DP=79;GPV=1;SPV=2.8323e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:15,8:12,6
+chr6	84553785	.	G	A	0	PASS	DP=90;GPV=1;SPV=6.2178e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:25,20:13,12:12,8
+chr6	85139497	.	TA	T	0	PASS	DP=100;GPV=1;SPV=0.012113;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:46,10:24,6:22,4
+chr6	86079873	.	TG	T	0	PASS	DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:9,4:0,0
+chr6	86084768	.	A	T	0	PASS	DP=84;GPV=1;SPV=0.00022479;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:34,13:18,10:16,3
+chr6	86919045	.	A	G	0	PASS	DP=76;GPV=1;SPV=1.407e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:9,5:15,9
+chr6	89898209	.	T	C	0	PASS	DP=46;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:5,4:0,2:5,2
+chr6	89898210	.	C	CT	0	PASS	DP=48;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:5,4:0,2:5,2
+chr6	92600290	.	A	T	0	PASS	DP=88;GPV=1;SPV=4.4665e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:29,16:12,10:17,6
+chr6	92865613	.	G	A	0	PASS	DP=87;GPV=1;SPV=0.006558;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:20,4:17,3
+chr6	93868128	.	C	A	0	PASS	DP=58;GPV=1;SPV=1.0101e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:16,15:11,6:5,9
+chr6	94020487	.	C	CTT	0	PASS	DP=20;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:3,7:1,5:2,2
+chr6	94693792	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.029299;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:17,3:20,2
+chr6	94877715	.	T	C	0	PASS	DP=80;GPV=1;SPV=6.7628e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:27,17:19,6:8,11
+chr6	95761800	.	G	A	0	PASS	DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:16,3:20,1
+chr6	96014087	.	G	A	0	PASS	DP=96;GPV=1;SPV=1.4866e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:34,20:20,11:14,9
+chr6	96606824	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.0018869;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:23,7:10,3:13,4
+chr6	102982459	.	C	T	0	PASS	DP=88;GPV=1;SPV=0.0014491;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:38,10:15,5:23,5
+chr6	103661442	.	G	A	0	PASS	DP=63;GPV=1;SPV=0.0004646;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:23,11:9,8:14,3
+chr6	104029816	.	A	AT	0	PASS	DP=90;GPV=1;SPV=3.0489e-06;SS=2;SSC=55;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:31,18:17,5:14,13
+chr6	105100608	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.015574;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:9,2:11,9
+chr6	109266216	.	C	A	0	PASS	DP=69;GPV=1;SPV=4.8252e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:21,17:11,9:10,8
+chr6	111552074	.	TCTGTAAGATAACACACCTGCTCGGTGCC	T	0	PASS	DP=98;GPV=1;SPV=9.7235e-06;SS=2;SSC=50;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:29,12:15,9:14,3
+chr6	115737485	.	A	G	0	PASS	DP=82;GPV=1;SPV=0.016865;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:28,10:19,9:9,1
+chr6	115845939	.	C	T	0	PASS	DP=97;GPV=1;SPV=1.1232e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:31,17:17,10:14,7
+chr6	116865987	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,4:9,2:13,2
+chr6	117043420	.	A	T	0	PASS	DP=95;GPV=1;SPV=4.0601e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:37,15:21,9:16,6
+chr6	117204895	.	C	T	0	PASS	DP=96;GPV=1;SPV=2.509e-08;SS=2;SSC=76;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,19:11,8:14,11
+chr6	117327934	.	C	T	0	PASS	DP=77;GPV=1;SPV=3.406e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:7,8:17,4
+chr6	120492825	.	G	GT	0	PASS	DP=33;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:8,7:6,5:2,2
+chr6	122939368	.	T	A	0	PASS	DP=61;GPV=1;SPV=5.5438e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,12:2,5:12,7
+chr6	125115312	.	G	T	0	PASS	DP=84;GPV=1;SPV=4.2777e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:27,23:11,5:16,18
+chr6	125388817	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:9,6:8,3
+chr6	127107190	.	G	A	0	PASS	DP=83;GPV=1;SPV=0.00026518;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:18,7:13,4
+chr6	127400962	.	T	C	0	PASS	DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:12,2:9,3
+chr6	128108069	.	A	AAC	0	PASS	DP=61;GPV=1;SPV=0.041933;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,6:12,3:9,3
+chr6	128995167	.	A	T	0	PASS	DP=91;GPV=1;SPV=7.3375e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:15,7:14,7
+chr6	129256765	.	T	A	0	PASS	DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,5:7,4:5,1
+chr6	129718386	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.30847;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:16,2:8,1:8,1
+chr6	131887554	.	A	G	0	PASS	DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:3,2:13,2
+chr6	132188514	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.0079864;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,7:8,6:1,1
+chr6	132812197	.	CAA	C	0	PASS	DP=44;GPV=1;SPV=0.010225;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:7,9:6,2
+chr6	135134361	.	C	G	0	PASS	DP=100;GPV=1;SPV=7.7318e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:21,11:12,3
+chr6	137563806	.	T	TAAA	0	PASS	DP=37;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:19,3:2,1
+chr6	137869337	.	A	AGATG	0	PASS	DP=99;GPV=1;SPV=0.016315;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:71:47,19:29,10:18,9
+chr6	138793970	.	C	CA	0	PASS	DP=47;GPV=1;SPV=0.0038641;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:9,10:4,2
+chr6	139193824	.	A	T	0	PASS	DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:9,1:8,4
+chr6	140483649	.	G	T	0	PASS	DP=90;GPV=1;SPV=3.9692e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:33,20:18,10:15,10
+chr6	140605492	.	A	T	0	PASS	DP=49;GPV=1;SPV=0.19369;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:10,5:5,4:5,1
+chr6	141678628	.	T	TG	0	PASS	DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:18,5:10,1:8,4
+chr6	143935212	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.00010084;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:29,15:14,8:15,7
+chr6	145235631	.	T	A	0	PASS	DP=19;GPV=1;SPV=0.004662;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:0,7:0,5:0,2
+chr6	145276229	.	AT	A	0	PASS	DP=49;GPV=1;SPV=0.026073;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:12,5:9,3:3,2
+chr6	147579454	.	ATT	A	0	PASS	DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,7:9,3:6,4
+chr6	147797074	.	A	C	0	PASS	DP=27;GPV=1;SPV=0.054106;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:6,3:5,2
+chr6	148504588	.	C	T	0	PASS	DP=92;GPV=1;SPV=7.4436e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:19,5:17,9
+chr6	149234864	.	G	GA	0	PASS	DP=48;GPV=1;SPV=0.034441;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,8:12,7:2,1
+chr6	150582652	.	C	CTGTGTGTG	0	PASS	DP=28;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,9:3,6:3,3
+chr6	152988793	.	G	A	0	PASS	DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,1:6,1
+chr6	153664278	.	G	A	0	PASS	DP=80;GPV=1;SPV=9.559e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:26,15:15,8:11,7
+chr6	153851624	.	T	G	0	PASS	DP=40;GPV=1;SPV=0.015475;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:6,4:5,5
+chr6	154331369	.	AG	A	0	PASS	DP=67;GPV=1;SPV=0.052565;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:19,3:17,3
+chr6	154525428	.	CATATAT	C	0	PASS	DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:3,2:21,2
+chr6	154721214	.	C	CT	0	PASS	DP=39;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:6,7:5,3
+chr6	154955391	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,4:14,3:6,1
+chr6	155094546	.	C	CT	0	PASS	DP=28;GPV=1;SPV=0.32712;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,4:7,3:3,1
+chr6	156440895	.	G	GAAA	0	PASS	DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:20,1:4,3
+chr6	157060630	.	CTT	C	0	PASS	DP=28;GPV=1;SPV=0.00078745;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:3,11:0,7:3,4
+chr6	158020219	.	C	T	0	PASS	DP=44;GPV=1;SPV=0.031408;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:6,3:9,1
+chr6	158380894	.	C	CAAAAAAA	0	PASS	DP=41;GPV=1;SPV=0.027218;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,4:6,3:2,1
+chr6	161516848	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.23684;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:8,2:3,1:5,1
+chr6	162840075	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:6,1:8,7
+chr6	163269971	.	G	GA	0	PASS	DP=43;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,4:20,4:0,0
+chr6	164431026	.	C	T	0	PASS	DP=83;GPV=1;SPV=0.0044903;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:33,7:12,3:21,4
+chr6	164931741	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.04741;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,8:8,6:5,2
+chr6	164998919	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.00019233;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:11,4:14,6
+chr6	165128078	.	C	T	0	PASS	DP=52;GPV=1;SPV=0.01188;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:14,6:12,3:2,3
+chr6	166021090	.	A	T	0	PASS	DP=43;GPV=1;SPV=0.16591;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:11,3:13,1
+chr6	167169069	.	A	G	0	PASS	DP=86;GPV=1;SPV=0.039749;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:12,8:21,4
+chr6	168058269	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:6,1:15,3
+chr6	169006874	.	A	T	0	PASS	DP=77;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:4,3:3,2:1,1
+chr6	169222817	.	GA	G	0	PASS	DP=52;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:10,5:7,4:3,1
+chr6	170220841	.	G	GAA	0	PASS	DP=39;GPV=1;SPV=0.013906;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:11,9:2,2
+chr6	170466290	.	C	G	0	PASS	DP=45;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:23,5:7,3:16,2
+chr7	125989	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,6:8,5:3,1
+chr7	742841	.	A	C	0	PASS	DP=51;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,5:14,2:7,3
+chr7	900880	.	CGAA	C	0	PASS	DP=110;GPV=1;SPV=0.012058;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:48,6:20,2:28,4
+chr7	1784983	.	T	TTTCA	0	PASS	DP=58;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,4:21,3:10,1
+chr7	1785213	.	CGTTCTTT	C	0	PASS	DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:10,1:10,4
+chr7	1786165	.	T	TC	0	PASS	DP=53;GPV=1;SPV=0.027438;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:6,5:1,4:5,1
+chr7	2283028	.	G	A	0	PASS	DP=60;GPV=1;SPV=0.032677;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:31,7:19,2:12,5
+chr7	2365625	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.0062705;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:27,11:7,5:20,6
+chr7	2499632	.	C	T	0	PASS	DP=105;GPV=1;SPV=0.0024716;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:52,11:23,5:29,6
+chr7	2708118	.	C	T	0	PASS	DP=86;GPV=1;SPV=8.388e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:32,13:16,4:16,9
+chr7	3700286	.	A	C	0	PASS	DP=84;GPV=1;SPV=0.00012616;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:8,5:19,5
+chr7	4283561	.	T	TA	0	PASS	DP=56;GPV=1;SPV=0.030925;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,5:10,4:6,1
+chr7	4945185	.	T	TTTCTTCTTC	0	PASS	DP=30;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,4:2,3:11,1
+chr7	5242710	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:18,3:7,1
+chr7	6207086	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,2:3,2
+chr7	6641248	.	G	A	0	PASS	DP=96;GPV=1;SPV=4.4921e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:39,16:19,5:20,11
+chr7	6885994	.	T	G	0	PASS	DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:5,4:1,3:4,1
+chr7	7723348	.	C	T	0	PASS	DP=98;GPV=1;SPV=3.5101e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:31,19:11,9:20,10
+chr7	7784756	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:6,7:3,5:3,2
+chr7	7964089	.	C	T	0	PASS	DP=83;GPV=1;SPV=5.1287e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:15,7:12,9
+chr7	8339959	.	C	CCT	0	PASS	DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,5:1,3:7,2
+chr7	8995723	.	C	CAA	0	PASS	DP=38;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:9,6:8,5:1,1
+chr7	9154860	.	T	TA	0	PASS	DP=60;GPV=1;SPV=0.0026989;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:10,4:7,4
+chr7	9307186	.	C	T	0	PASS	DP=58;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:4,2:0,0:4,2
+chr7	9522092	.	C	CA	0	PASS	DP=54;GPV=1;SPV=0.023032;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,9:15,8:3,1
+chr7	10335426	.	A	G	0	PASS	DP=89;GPV=1;SPV=6.8006e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:26,22:15,12:11,10
+chr7	11076567	.	C	CTT	0	PASS	DP=42;GPV=1;SPV=0.0036151;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:10,7:9,6:1,1
+chr7	11917838	.	T	G	0	PASS	DP=69;GPV=1;SPV=5.3877e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:25,16:14,9:11,7
+chr7	12276954	.	A	G	0	PASS	DP=94;GPV=1;SPV=1.153e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:14,11:13,8
+chr7	14260855	.	C	T	0	PASS	DP=99;GPV=1;SPV=0.00029634;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:39,11:20,6:19,5
+chr7	14723024	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:14,2:17,2
+chr7	16731927	.	A	AT	0	PASS	DP=84;GPV=1;SPV=0.03699;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,7:6,6:14,1
+chr7	18098177	.	T	A	0	PASS	DP=77;GPV=1;SPV=0.0027963;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,7:14,2:14,5
+chr7	19219807	.	A	T	0	PASS	DP=41;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,5:5,3:13,2
+chr7	19299685	.	C	G	0	PASS	DP=85;GPV=1;SPV=0.0033096;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:38,9:15,5:23,4
+chr7	21828760	.	G	GT	0	PASS	DP=49;GPV=1;SPV=0.0027946;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,9:9,6:9,3
+chr7	21956238	.	A	AT	0	PASS	DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:9,3:3,1
+chr7	21971073	.	T	A	0	PASS	DP=49;GPV=1;SPV=0.067927;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,7:9,3:17,4
+chr7	23364547	.	CA	C	0	PASS	DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:9,4:0,0
+chr7	24215811	.	T	A	0	PASS	DP=35;GPV=1;SPV=0.13094;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,7:10,3:4,4
+chr7	24388530	.	C	CTTTTTTTTTTTT	0	PASS	DP=36;GPV=1;SPV=0.069102;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:18,6:9,3:9,3
+chr7	24428043	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.010479;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:12,9:5,5:7,4
+chr7	25085914	.	C	CA	0	PASS	DP=30;GPV=1;SPV=0.024176;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:6,3:2,1
+chr7	25749249	.	T	G	0	PASS	DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:14,3:6,1
+chr7	27613172	.	TAA	T	0	PASS	DP=28;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,5:4,3:3,2
+chr7	29538789	.	C	T	0	PASS	DP=79;GPV=1;SPV=6.2994e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:29,14:18,6:11,8
+chr7	30056742	.	AGTGT	A	0	PASS	DP=28;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:7,6:2,5:5,1
+chr7	30126166	.	T	C	0	PASS	DP=57;GPV=1;SPV=0.0012929;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:13,12:5,4:8,8
+chr7	30126168	.	C	CAGGCTTGTGTGAAGGCCCTGA	0	PASS	DP=50;GPV=1;SPV=0.018715;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:7,2:9,7
+chr7	31859456	.	A	T	0	PASS	DP=62;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:30:1,3:0,1:1,2
+chr7	32572431	.	C	T	0	PASS	DP=72;GPV=1;SPV=0.071749;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:17,2:17,2
+chr7	34805479	.	C	CAA	0	PASS	DP=40;GPV=1;SPV=0.0036984;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:7,7:3,1
+chr7	37270883	.	A	T	0	PASS	DP=66;GPV=1;SPV=0.032477;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:10,6:3,3:7,3
+chr7	37292568	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:5,2:14,2
+chr7	39071654	.	AACACAC	A	0	PASS	DP=44;GPV=1;SPV=0.027751;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,5:7,3:2,2
+chr7	41793616	.	A	G	0	PASS	DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:12,1:1,3
+chr7	41829126	.	A	AATTTCCCTTAGGC	0	PASS	DP=61;GPV=1;SPV=0.00429;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:17,8:7,6
+chr7	43101336	.	C	T	0	PASS	DP=17;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:1,4:0,0:1,4
+chr7	43710371	.	A	AAT	0	PASS	DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,2:4,2
+chr7	43910382	.	ATTT	A	0	PASS	DP=37;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:7,2:7,6
+chr7	43974178	.	T	TC	0	PASS	DP=75;GPV=1;SPV=0.049981;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,7:12,6:11,1
+chr7	44687091	.	A	AT	0	PASS	DP=47;GPV=1;SPV=0.048875;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:15,8:4,4:11,4
+chr7	44914984	.	G	GTAAAATAAAATAAAATAAAA	0	PASS	DP=61;GPV=1;SPV=0.046858;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:8,4:16,2
+chr7	45933631	.	G	GTGTGTATATATATATATA	0	PASS	DP=26;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,4:1,2:2,2
+chr7	46322435	.	C	CA	0	PASS	DP=54;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,10:12,7:6,3
+chr7	46494124	.	CA	C	0	PASS	DP=46;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:9,8:8,7:1,1
+chr7	46854685	.	AAG	A	0	PASS	DP=68;GPV=1;SPV=0.0054249;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,6:8,3:16,3
+chr7	48685289	.	C	T	0	PASS	DP=92;GPV=1;SPV=1.2446e-06;SS=2;SSC=59;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:30,18:16,11:14,7
+chr7	48779323	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.0040452;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:15,5:12,2
+chr7	50125285	.	CACAT	C	0	PASS	DP=40;GPV=1;SPV=0.23279;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:13,2:9,1
+chr7	50125311	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.22793;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:20,3:14,2:6,1
+chr7	52119708	.	C	G	0	PASS	DP=71;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:24,4:21,1:3,3
+chr7	52960966	.	A	G	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:3,1:3,1
+chr7	53352375	.	C	T	0	PASS	DP=88;GPV=1;SPV=1.9877e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:29,30:17,16:12,14
+chr7	53511530	.	C	CT	0	PASS	DP=80;GPV=1;SPV=3.6174e-05;SS=2;SSC=44;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,12:11,8:14,4
+chr7	53725863	.	T	C	0	PASS	DP=93;GPV=1;SPV=1.6173e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:20,7:12,7
+chr7	54140025	.	G	A	0	PASS	DP=92;GPV=1;SPV=7.4436e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:21,10:15,4
+chr7	54464390	.	C	A	0	PASS	DP=72;GPV=1;SPV=2.6047e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:23,21:8,14:15,7
+chr7	55783389	.	T	C	0	PASS	DP=67;GPV=1;SPV=0.0054024;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:16,7:8,5:8,2
+chr7	56127231	.	C	CA	0	PASS	DP=56;GPV=1;SPV=0.0011989;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:7,10:4,7:3,3
+chr7	56461566	.	T	G	0	PASS	DP=85;GPV=1;SPV=0.001598;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:32,8:25,4:7,4
+chr7	56638434	.	C	T	0	PASS	DP=64;GPV=1;SPV=3.2896e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:18,17:7,13:11,4
+chr7	56836506	.	T	A	0	PASS	DP=92;GPV=1;SPV=0.038534;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:37,8:21,4:16,4
+chr7	58080955	.	G	A	0	PASS	DP=316;GPV=1;SPV=0.032754;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:181:158,23:92,16:66,7
+chr7	59230222	.	C	T	0	PASS	DP=616;GPV=1;SPV=0.02511;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:343:302,41:188,22:114,19
+chr7	59570491	.	G	A	0	PASS	DP=57;GPV=1;SPV=0.20823;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:29,3:6,1
+chr7	60036939	.	T	C	0	PASS	DP=75;GPV=1;SPV=0.0067216;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:22,10:6,2
+chr7	60039753	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.021448;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:18,4:0,0
+chr7	60949959	.	C	T	0	PASS	DP=216;GPV=1;SPV=0.0071561;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:117:98,19:63,14:35,5
+chr7	60955048	.	G	C	0	PASS	DP=279;GPV=1;SPV=0.034864;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:154:138,16:56,6:82,10
+chr7	60996619	.	TGA	T	0	PASS	DP=96;GPV=1;SPV=0.048603;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:53,6:24,2:29,4
+chr7	61385398	.	TA	T	0	PASS	DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:30,4:19,2:11,2
+chr7	61488604	.	T	C	0	PASS	DP=81;GPV=1;SPV=0.021997;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:25,4:7,3
+chr7	61506551	.	A	T	0	PASS	DP=89;GPV=1;SPV=0.021309;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:1,1:42,9
+chr7	61724133	.	A	G	0	PASS	DP=72;GPV=1;SPV=0.045334;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:11,1:18,5
+chr7	61803165	.	C	A	0	PASS	DP=65;GPV=1;SPV=0.022093;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:14,5:18,2
+chr7	62106160	.	T	C	0	PASS	DP=30;GPV=1;SPV=0.054634;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:9,3:5,5
+chr7	62256928	.	C	T	0	PASS	DP=139;GPV=1;SPV=0.039915;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:68,13:22,5:46,8
+chr7	62266780	.	G	T	0	PASS	DP=106;GPV=1;SPV=1.7776e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:27,18:12,8:15,10
+chr7	62277206	.	C	G	0	PASS	DP=132;GPV=1;SPV=0.012901;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:58,11:11,6:47,5
+chr7	63448596	.	T	A	0	PASS	DP=20;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,2:0,0:3,2
+chr7	63553934	.	CT	C	0	PASS	DP=59;GPV=1;SPV=0.012389;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,10:10,8:10,2
+chr7	63598391	.	G	T	0	PASS	DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:24,3:5,1
+chr7	63632179	.	T	TA	0	PASS	DP=106;GPV=1;SPV=0.029668;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:57:39,11:22,8:17,3
+chr7	63752221	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:29,4:19,3:10,1
+chr7	63757713	.	A	C	0	PASS	DP=195;GPV=1;SPV=0.0065609;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:105:92,13:38,7:54,6
+chr7	63944244	.	T	C	0	PASS	DP=75;GPV=1;SPV=0.0010226;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:30,10:14,7:16,3
+chr7	64222086	.	T	TA	0	PASS	DP=66;GPV=1;SPV=0.033688;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,5:10,3:19,2
+chr7	64666914	.	AAGGTGGAAATTTTCTGGTCACGTAATCAGAGCTTAATTGGCAGTTCATGGTTGATTAAG	A	0	PASS	DP=46;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,7:11,5:5,2
+chr7	65519244	.	C	T	0	PASS	DP=72;GPV=1;SPV=0.03902;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:37,6:20,4:17,2
+chr7	65847313	.	A	T	0	PASS	DP=28;GPV=1;SPV=0.0041408;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,8:5,4:3,4
+chr7	66096249	.	C	CA	0	PASS	DP=72;GPV=1;SPV=0.00021148;SS=2;SSC=36;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,12:17,6:9,6
+chr7	66328888	.	A	C	0	PASS	DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:4,1:2,2
+chr7	66337299	.	A	AT	0	PASS	DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:13,11:11,7:2,4
+chr7	68320052	.	TTATATAAAATGATATAATCATTA	T	0	PASS	DP=64;GPV=1;SPV=0.0061323;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:16,7:12,2
+chr7	68392265	.	C	CA	0	PASS	DP=48;GPV=1;SPV=0.0027973;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,8:5,7:2,1
+chr7	68749044	.	G	A	0	PASS	DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:27,10:11,6:16,4
+chr7	68799621	.	CA	C	0	PASS	DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:16,8:15,7:1,1
+chr7	68803172	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.00087424;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:26,10:13,7:13,3
+chr7	69092754	.	C	T	0	PASS	DP=92;GPV=1;SPV=7.7788e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:29,18:14,9:15,9
+chr7	69459100	.	A	ATATG	0	PASS	DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:4,3:3,2
+chr7	69459102	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:3,3:2,2
+chr7	70716636	.	CAAAAA	C	0	PASS	DP=37;GPV=1;SPV=0.033806;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:8,6:2,1
+chr7	71090756	.	C	CTT	0	PASS	DP=32;GPV=1;SPV=0.12384;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:7,9:5,5:2,4
+chr7	71431210	.	T	C	0	PASS	DP=34;GPV=1;SPV=0.018626;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:9,7:4,3:5,4
+chr7	71901426	.	C	CA	0	PASS	DP=71;GPV=1;SPV=0.00029659;SS=2;SSC=35;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,9:5,4:8,5
+chr7	72620481	.	A	G	0	PASS	DP=71;GPV=1;SPV=0.021372;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:29,5:16,3:13,2
+chr7	73836515	.	C	A	0	PASS	DP=38;GPV=1;SPV=0.0018031;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:8,8:4,1
+chr7	75103559	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.048878;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:22,2:17,4
+chr7	75151114	.	T	C	0	PASS	DP=78;GPV=1;SPV=0.025775;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:18,2:18,7
+chr7	75663980	.	A	ATG	0	PASS	DP=26;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,4:2,1:8,3
+chr7	75740366	.	C	CGTGTGTGTGT	0	PASS	DP=48;GPV=1;SPV=0.00329;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:15,11:12,7:3,4
+chr7	76640861	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:8,1:4,7
+chr7	76855720	.	G	A	0	PASS	DP=81;GPV=1;SPV=2.8637e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:28,21:15,12:13,9
+chr7	77983435	.	C	CTCTCCCTT	0	PASS	DP=23;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:4,2:0,0:4,2
+chr7	80284488	.	TATACAC	T	0	PASS	DP=22;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:2,3:0,2:2,1
+chr7	87720542	.	ATG	A	0	PASS	DP=59;GPV=1;SPV=0.0065837;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:8,5:13,9
+chr7	89430318	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.0001214;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:14,7:16,8
+chr7	91290943	.	C	CATATATATATAT	0	PASS	DP=43;GPV=1;SPV=0.037765;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,6:7,5:13,1
+chr7	92125953	.	C	G	0	PASS	DP=78;GPV=1;SPV=0.0019211;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:32,9:24,3:8,6
+chr7	92712882	.	T	G	0	PASS	DP=83;GPV=1;SPV=0.037048;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:43,6:27,2:16,4
+chr7	94859942	.	CTTTTTTTTTTTT	C	0	PASS	DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,9:5,5:6,4
+chr7	96588397	.	C	CGAGAGA	0	PASS	DP=53;GPV=1;SPV=0.10773;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,5:8,4:14,1
+chr7	97016257	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:11,3:11,1
+chr7	98453806	.	C	CA	0	PASS	DP=38;GPV=1;SPV=0.023342;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:15,6:10,5:5,1
+chr7	98558737	.	A	AT	0	PASS	DP=34;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:11,5:5,2:6,3
+chr7	98811329	.	G	A	0	PASS	DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,3:7,1
+chr7	99122772	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.015549;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,18:6,4:12,14
+chr7	99181145	.	CTCTCCGTCTGTG	C	0	PASS	DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:9,3:6,1
+chr7	99209704	.	A	G	0	PASS	DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:11,2:8,2
+chr7	99909732	.	T	G	0	PASS	DP=49;GPV=1;SPV=0.02798;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:11,5:7,2
+chr7	100001262	.	CT	C	0	PASS	DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:6,4:3,2
+chr7	100911939	.	C	CA	0	PASS	DP=51;GPV=1;SPV=0.048243;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,7:16,6:4,1
+chr7	101070347	.	C	CAA	0	PASS	DP=33;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,4:8,3:6,1
+chr7	101329607	.	A	ATTT	0	PASS	DP=32;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:8,1:5,4
+chr7	101630135	.	CA	C	0	PASS	DP=51;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:5,15:3,13:2,2
+chr7	101790096	.	CAAA	C	0	PASS	DP=28;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:8,4:5,2
+chr7	102345852	.	T	C	0	PASS	DP=89;GPV=1;SPV=0.045941;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:44,5:21,1:23,4
+chr7	102776713	.	A	G	0	PASS	DP=78;GPV=1;SPV=0.01162;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:30,8:13,3:17,5
+chr7	103063712	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,7:3,4:5,3
+chr7	103518350	.	A	T	0	PASS	DP=44;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:12,5:8,2:4,3
+chr7	104860178	.	C	A	0	PASS	DP=74;GPV=1;SPV=0.03735;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:12,6:7,4:5,2
+chr7	107260075	.	G	GATATATATATATATATATATAT	0	PASS	DP=36;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:16,4:6,2:10,2
+chr7	108164196	.	A	G	0	PASS	DP=33;GPV=1;SPV=0.083394;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:12,3:12,1:0,2
+chr7	108335434	.	CTTT	C	0	PASS	DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:8,3:3,1
+chr7	108696762	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.007164;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:20,4:19,3
+chr7	109510329	.	T	TA	0	PASS	DP=93;GPV=1;SPV=0.0012714;SS=2;SSC=28;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:20,5:20,5
+chr7	111031406	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.019517;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,11:8,2:16,9
+chr7	114043333	.	ATATT	A	0	PASS	DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:5,3:4,3
+chr7	115946417	.	G	T	0	PASS	DP=71;GPV=1;SPV=0.065336;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:21,2:16,3
+chr7	116968289	.	C	T	0	PASS	DP=18;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:9:1,3:0,0:1,3
+chr7	116968293	.	C	T	0	PASS	DP=18;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:1,2:0,0:1,2
+chr7	117027498	.	T	TAAAGTA	0	PASS	DP=54;GPV=1;SPV=0.019211;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,5:9,1:8,4
+chr7	117027518	.	G	GTA	0	PASS	DP=46;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:12,1:5,4
+chr7	117161593	.	T	TTC	0	PASS	DP=51;GPV=1;SPV=0.002293;SS=2;SSC=26;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:17,9:4,5:13,4
+chr7	117368531	.	A	G	0	PASS	DP=80;GPV=1;SPV=3.6779e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:30,16:15,8:15,8
+chr7	119352975	.	A	G	0	PASS	DP=91;GPV=1;SPV=7.3373e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:34,13:19,5:15,8
+chr7	119470828	.	G	A	0	PASS	DP=78;GPV=1;SPV=1.2626e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:9,5:13,7
+chr7	119563108	.	C	T	0	PASS	DP=62;GPV=1;SPV=3.0044e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:11,13:1,5:10,8
+chr7	119683798	.	A	T	0	PASS	DP=89;GPV=1;SPV=1.0223e-08;SS=2;SSC=79;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:23,22:9,8:14,14
+chr7	120832936	.	A	C	0	PASS	DP=93;GPV=1;SPV=1.5865e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:31,18:18,9:13,9
+chr7	122817966	.	G	A	0	PASS	DP=42;GPV=1;SPV=0.0010673;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:3,5:9,3
+chr7	124273969	.	C	T	0	PASS	DP=107;GPV=1;SPV=6.8612e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:39,16:21,5:18,11
+chr7	125376962	.	C	T	0	PASS	DP=90;GPV=1;SPV=2.9284e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:29,22:19,14:10,8
+chr7	126270448	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.00010787;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:27,15:11,9:16,6
+chr7	126819275	.	T	TACACACACACACACAC	0	PASS	DP=70;GPV=1;SPV=0.016864;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,12:13,10:11,2
+chr7	128110674	.	A	ATGTGTGTGTGTGTGTG	0	PASS	DP=46;GPV=1;SPV=0.11302;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,4:12,3:9,1
+chr7	130138858	.	T	TG	0	PASS	DP=47;GPV=1;SPV=0.0076433;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:10,4:8,3
+chr7	130537779	.	C	T	0	PASS	DP=90;GPV=1;SPV=0.03237;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:35,8:17,3:18,5
+chr7	131634569	.	T	C	0	PASS	DP=21;GPV=1;SPV=0.031674;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:0,4:3,1
+chr7	131828699	.	C	CT	0	PASS	DP=38;GPV=1;SPV=0.042901;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:1,1:10,4
+chr7	132469136	.	A	G	0	PASS	DP=57;GPV=1;SPV=0.090036;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:31,5:14,1:17,4
+chr7	133110986	.	A	AT	0	PASS	DP=40;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:5,5:7,3
+chr7	134728845	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,6:8,3:1,3
+chr7	135778671	.	G	A	0	PASS	DP=68;GPV=1;SPV=0.00042894;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:28,14:14,6:14,8
+chr7	136216482	.	A	C	0	PASS	DP=59;GPV=1;SPV=0.00069152;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:12,6:10,5
+chr7	137153236	.	T	C	0	PASS	DP=45;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,4:5,3:8,1
+chr7	142027018	.	G	A	0	PASS	DP=92;GPV=1;SPV=1.9039e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:18,6:14,8
+chr7	142504164	.	C	CA	0	PASS	DP=94;GPV=1;SPV=0.011694;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:38,14:18,4:20,10
+chr7	143414019	.	C	G	0	PASS	DP=56;GPV=1;SPV=9.708e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:13,17:2,3:11,14
+chr7	143969350	.	T	A	0	PASS	DP=28;GPV=1;SPV=0.15441;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:5,2:0,1:5,1
+chr7	144189461	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.027836;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:10,4:0,0
+chr7	144245406	.	C	T	0	PASS	DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:0,0:11,4
+chr7	144276614	.	G	C	0	PASS	DP=138;GPV=1;SPV=0.017212;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:58,14:30,3:28,11
+chr7	144960605	.	CTT	C	0	PASS	DP=62;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:2,3:0,1:2,2
+chr7	146031126	.	A	T	0	PASS	DP=75;GPV=1;SPV=6.5721e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:30,19:12,10:18,9
+chr7	148369181	.	CTTTTTT	C	0	PASS	DP=27;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,4:5,1:3,3
+chr7	148502355	.	C	CA	0	PASS	DP=22;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,4:1,3:2,1
+chr7	149220929	.	T	G	0	PASS	DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:19,1:8,3
+chr7	151437550	.	G	A	0	PASS	DP=91;GPV=1;SPV=5.7714e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:31,16:12,4:19,12
+chr7	151874357	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:36,4:26,2:10,2
+chr7	151874429	.	TATG	T	0	PASS	DP=45;GPV=1;SPV=0.0972;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:18,2:6,3
+chr7	151874450	.	TATG	T	0	PASS	DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:17,2:4,4
+chr7	152411361	.	C	CT	0	PASS	DP=87;GPV=1;SPV=0.0077049;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:14,4:19,7
+chr7	152411367	.	C	T	0	PASS	DP=92;GPV=1;SPV=0.029255;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:39,7:15,2:24,5
+chr7	152770419	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.050539;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:21,4:14,1
+chr7	154157139	.	G	A	0	PASS	DP=109;GPV=1;SPV=0.021727;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:53,13:31,2:22,11
+chr7	154800711	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.00091233;SS=2;SSC=30;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:41,10:14,6:27,4
+chr7	155337547	.	G	A	0	PASS	DP=99;GPV=1;SPV=6.0843e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:17,4:16,7
+chr7	155615496	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.25167;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:13,1:9,2
+chr7	155616708	.	G	A	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:1,2:5,1
+chr7	156321270	.	C	CTTCT	0	PASS	DP=62;GPV=1;SPV=0.0097922;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,7:8,2:18,5
+chr7	156548362	.	C	T	0	PASS	DP=73;GPV=1;SPV=0.0016791;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:17,4:12,5
+chr7	157648761	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:6,3:11,1
+chr7	158165133	.	CAAAG	C	0	PASS	DP=55;GPV=1;SPV=0.0081402;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:17,10:7,3:10,7
+chr8	94650	.	T	C	0	PASS	DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,5:3,4:12,1
+chr8	299056	.	T	A	0	PASS	DP=76;GPV=1;SPV=0.046182;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:12,1:19,5
+chr8	625246	.	A	T	0	PASS	DP=87;GPV=1;SPV=0.0020209;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:60:45,15:27,7:18,8
+chr8	3266604	.	CA	C	0	PASS	DP=31;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:7,8:4,7:3,1
+chr8	5057443	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.040404;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:13,4:12,3:1,1
+chr8	6059536	.	A	AAAAAAAAAAAAAC	0	PASS	DP=33;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:0,8:0,4:0,4
+chr8	7219935	.	C	T	0	PASS	DP=69;GPV=1;SPV=0.0017323;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:30,11:16,6:14,5
+chr8	7411399	.	C	G	0	PASS	DP=183;GPV=1;SPV=0.047881;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:87,13:41,3:46,10
+chr8	7413090	.	A	G	0	PASS	DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:21,4:0,0
+chr8	7413451	.	T	C	0	PASS	DP=196;GPV=1;SPV=0.030614;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:74,17:34,8:40,9
+chr8	7444971	.	T	G	0	PASS	DP=73;GPV=1;SPV=0.00045133;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:24,9:7,5
+chr8	7584732	.	C	G	0	PASS	DP=160;GPV=1;SPV=0.033917;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:81:66,15:32,3:34,12
+chr8	7603062	.	G	A	0	PASS	DP=139;GPV=1;SPV=0.039121;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:74,9:42,4:32,5
+chr8	7615899	.	T	A	0	PASS	DP=91;GPV=1;SPV=0.036261;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:40,7:22,1:18,6
+chr8	7774759	.	T	C	0	PASS	DP=53;GPV=1;SPV=4.9545e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:8,16:1,9:7,7
+chr8	7807920	.	ATC	A	0	PASS	DP=49;GPV=1;SPV=0.013574;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:15,7:3,2
+chr8	8017431	.	C	G	0	PASS	DP=81;GPV=1;SPV=0.0049791;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:8,2:28,11
+chr8	8073044	.	T	C	0	PASS	DP=29;GPV=1;SPV=0.0071032;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:7,11:1,7:6,4
+chr8	8153779	.	G	A	0	PASS	DP=43;GPV=1;SPV=0.02362;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,3:3,1
+chr8	8169112	.	G	A	0	PASS	DP=67;GPV=1;SPV=0.044315;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:25,6:4,1
+chr8	8170515	.	C	G	0	PASS	DP=217;GPV=1;SPV=0.017921;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:125:106,19:57,9:49,10
+chr8	8170820	.	C	T	0	PASS	DP=157;GPV=1;SPV=0.00073289;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:79:64,15:37,9:27,6
+chr8	8204394	.	T	A	0	PASS	DP=173;GPV=1;SPV=0.034513;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:72,19:36,13:36,6
+chr8	11969487	.	A	ATTTTT	0	PASS	DP=38;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,4:7,1:14,3
+chr8	12117723	.	G	C	0	PASS	DP=99;GPV=1;SPV=0.012991;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:61:44,17:24,5:20,12
+chr8	12176643	.	A	G	0	PASS	DP=111;GPV=1;SPV=0.037547;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:48,11:30,6:18,5
+chr8	12419722	.	C	G	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:2,2:18,2
+chr8	12448115	.	G	A	0	PASS	DP=35;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:0,5:15,1
+chr8	12546522	.	C	CAA	0	PASS	DP=223;GPV=1;SPV=0.037025;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:79,15:53,8:26,7
+chr8	12554173	.	T	C	0	PASS	DP=256;GPV=1;SPV=0.036908;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:131:110,21:69,12:41,9
+chr8	12559473	.	C	A	0	PASS	DP=254;GPV=1;SPV=0.016787;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:147:118,29:44,12:74,17
+chr8	12560294	.	T	C	0	PASS	DP=89;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:41,5:21,2:20,3
+chr8	12570721	.	C	T	0	PASS	DP=312;GPV=1;SPV=0.029464;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:152:127,25:63,14:64,11
+chr8	12579161	.	C	T	0	PASS	DP=293;GPV=1;SPV=0.019813;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:158:133,25:65,11:68,14
+chr8	12584069	.	A	C	0	PASS	DP=268;GPV=1;SPV=0.029589;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:155:126,29:60,16:66,13
+chr8	13143846	.	G	C	0	PASS	DP=64;GPV=1;SPV=0.033467;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:19,8:13,6:6,2
+chr8	13699577	.	C	T	0	PASS	DP=37;GPV=1;SPV=0.51128;SS=2;SSC=2;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:14,4:6,3:8,1
+chr8	15719516	.	CCACACACA	C	0	PASS	DP=66;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:7,4:5,2:2,2
+chr8	16708195	.	TAC	T	0	PASS	DP=35;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:16,5:5,2:11,3
+chr8	17763014	.	C	T	0	PASS	DP=71;GPV=1;SPV=7.814e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:24,20:8,15:16,5
+chr8	19655561	.	C	T	0	PASS	DP=59;GPV=1;SPV=0.043229;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:14,5:16,1
+chr8	20030870	.	C	CTTT	0	PASS	DP=40;GPV=1;SPV=0.027424;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,7:7,3:10,4
+chr8	20865118	.	TATATATAAAA	T	0	PASS	DP=24;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:10,4:0,1
+chr8	20875100	.	G	A	0	PASS	DP=75;GPV=1;SPV=6.3971e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:22,20:12,15:10,5
+chr8	22079301	.	T	TATATATATATATATA	0	PASS	DP=29;GPV=1;SPV=0.02037;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:9,5:4,4:5,1
+chr8	22079303	.	A	AG	0	PASS	DP=35;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:8,2:6,3
+chr8	22245096	.	C	T	0	PASS	DP=142;GPV=1;SPV=2.2221e-10;SS=2;SSC=96;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:68:42,26:20,20:22,6
+chr8	22401543	.	C	CTTTTT	0	PASS	DP=28;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,4:3,2:7,2
+chr8	22611406	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:5,3:12,2
+chr8	24440959	.	T	C	0	PASS	DP=80;GPV=1;SPV=0.00070294;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:29,9:13,6:16,3
+chr8	25169760	.	T	TAC	0	PASS	DP=69;GPV=1;SPV=0.0076361;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,13:12,9:10,4
+chr8	25410976	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,2:1,1:3,1
+chr8	26012319	.	G	A	0	PASS	DP=75;GPV=1;SPV=4.1392e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:26,14:11,12:15,2
+chr8	26113292	.	GAA	G	0	PASS	DP=42;GPV=1;SPV=0.0041486;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:10,11:6,9:4,2
+chr8	26257535	.	T	C	0	PASS	DP=55;GPV=1;SPV=0.0033619;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,9:10,3:9,6
+chr8	26917157	.	C	CA	0	PASS	DP=62;GPV=1;SPV=0.044908;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:18,3:14,3
+chr8	28881794	.	C	G	0	PASS	DP=63;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:19,5:10,1
+chr8	29666136	.	C	T	0	PASS	DP=80;GPV=1;SPV=0.035386;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:13,3:24,2
+chr8	30030807	.	AAG	A	0	PASS	DP=28;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:1,2:1,1:0,1
+chr8	31927439	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:9,2:6,2
+chr8	33245631	.	GT	G	0	PASS	DP=86;GPV=1;SPV=0.0059264;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:39,8:19,3:20,5
+chr8	33537950	.	G	A	0	PASS	DP=101;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:63:25,4:12,1:13,3
+chr8	34824884	.	C	T	0	PASS	DP=30;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:4,2:1,1:3,1
+chr8	35149090	.	C	A	0	PASS	DP=25;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,6:2,5:4,1
+chr8	35404880	.	G	A	0	PASS	DP=79;GPV=1;SPV=1.0708e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:22,12:10,6:12,6
+chr8	35428346	.	A	ATT	0	PASS	DP=31;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:5,3:8,2
+chr8	36134356	.	AT	A	0	PASS	DP=82;GPV=1;SPV=0.00015539;SS=2;SSC=38;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:7,8:26,6
+chr8	36215626	.	C	T	0	PASS	DP=87;GPV=1;SPV=9.7816e-11;SS=2;SSC=100;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:16,22:8,8:8,14
+chr8	36260946	.	C	A	0	PASS	DP=86;GPV=1;SPV=1.2115e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:25,12:11,9:14,3
+chr8	36278286	.	C	T	0	PASS	DP=96;GPV=1;SPV=0.008786;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:39,6:15,3:24,3
+chr8	36525243	.	GA	G	0	PASS	DP=38;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,5:16,3:4,2
+chr8	39594793	.	GTT	G	0	PASS	DP=37;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:9,8:6,4:3,4
+chr8	40117166	.	CTTT	C	0	PASS	DP=23;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,5:6,2:2,3
+chr8	41887242	.	CT	C	0	PASS	DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:1,8:8,2
+chr8	42225690	.	A	G	0	PASS	DP=88;GPV=1;SPV=3.7295e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:15,8:17,6
+chr8	44962509	.	C	A	0	PASS	DP=472;GPV=1;SPV=0.0034572;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:239:199,40:90,19:109,21
+chr8	45929132	.	G	C	0	PASS	DP=228;GPV=1;SPV=0.047932;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:134:115,19:81,11:34,8
+chr8	47037598	.	C	T	0	PASS	DP=89;GPV=1;SPV=1.2436e-07;SS=2;SSC=69;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:25,19:13,8:12,11
+chr8	47764017	.	G	T	0	PASS	DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:11,1:2,3
+chr8	47764018	.	T	G	0	PASS	DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:10,1:3,3
+chr8	47999362	.	C	CT	0	PASS	DP=75;GPV=1;SPV=0.0042057;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:13,3:16,4
+chr8	49876663	.	G	T	0	PASS	DP=80;GPV=1;SPV=2.701e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:30,17:17,6:13,11
+chr8	50053623	.	T	TTGTGTGTG	0	PASS	DP=58;GPV=1;SPV=0.033467;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,8:10,2:9,6
+chr8	50693392	.	G	A	0	PASS	DP=75;GPV=1;SPV=2.9903e-06;SS=2;SSC=55;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:23,17:5,4:18,13
+chr8	52535677	.	TA	T	0	PASS	DP=66;GPV=1;SPV=0.0025434;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:15,4:12,5
+chr8	52978238	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:19,4:8,3:11,1
+chr8	52989291	.	CTTT	C	0	PASS	DP=39;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,9:8,5:1,4
+chr8	55855177	.	T	G	0	PASS	DP=67;GPV=1;SPV=0.00065599;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:18,3:5,6
+chr8	57210828	.	G	C	0	PASS	DP=353;GPV=1;SPV=0.0021333;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:183:159,24:105,18:54,6
+chr8	58518952	.	CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C	0	PASS	DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:2,3:4,2
+chr8	58716687	.	T	TAAA	0	PASS	DP=36;GPV=1;SPV=0.011528;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,7:9,5:4,2
+chr8	60219929	.	T	TA	0	PASS	DP=28;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,8:3,4:4,4
+chr8	60917314	.	C	CT	0	PASS	DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:24,5:5,3:19,2
+chr8	60928420	.	GAA	G	0	PASS	DP=44;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:4,10:4,8:0,2
+chr8	60971071	.	CTT	C	0	PASS	DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:2,2:8,5
+chr8	65516206	.	AT	A	0	PASS	DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:32,5:15,2:17,3
+chr8	66355392	.	C	T	0	PASS	DP=83;GPV=1;SPV=6.9149e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:30,13:15,4:15,9
+chr8	66521790	.	GGAGAGAGAGAGA	G	0	PASS	DP=30;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:12,6:6,5:6,1
+chr8	66987287	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:12,6:6,5:6,1
+chr8	67583820	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.015386;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:15,2:7,2
+chr8	67975694	.	C	CT	0	PASS	DP=23;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:4,4:6,1
+chr8	68268026	.	G	T	0	PASS	DP=49;GPV=1;SPV=0.024256;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:7,10:2,3:5,7
+chr8	69258254	.	T	G	0	PASS	DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:3,2:3,1
+chr8	69853653	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.029803;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:13,7:16,4
+chr8	69873267	.	G	T	0	PASS	DP=66;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:12,4:3,2:9,2
+chr8	71305668	.	A	T	0	PASS	DP=44;GPV=1;SPV=0.048875;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:15,8:6,7:9,1
+chr8	71328691	.	G	A	0	PASS	DP=80;GPV=1;SPV=2.3366e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:12,9:15,5
+chr8	71712677	.	A	T	0	PASS	DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:7,2:4,2
+chr8	73007093	.	C	CT	0	PASS	DP=39;GPV=1;SPV=0.0039926;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,7:7,4:5,3
+chr8	73996368	.	CATTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	C	0	PASS	DP=48;GPV=1;SPV=0.024823;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,5:5,1:14,4
+chr8	74872603	.	G	T	0	PASS	DP=85;GPV=1;SPV=0.00035827;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:17,8:14,2
+chr8	76922395	.	A	G	0	PASS	DP=25;GPV=1;SPV=0.024348;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:1,1:4,2
+chr8	77520698	.	T	A	0	PASS	DP=42;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:7,2:3,1:4,1
+chr8	77691448	.	T	TATATATATATAC	0	PASS	DP=33;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:13,5:6,1:7,4
+chr8	78459433	.	T	TAC	0	PASS	DP=34;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,2:2,1:2,1
+chr8	80296492	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:6,2:3,1:3,1
+chr8	81908285	.	C	T	0	PASS	DP=85;GPV=1;SPV=3.3703e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:15,9:12,7
+chr8	82217222	.	G	T	0	PASS	DP=58;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:16,6:5,1:11,5
+chr8	83384842	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:14,1:9,3
+chr8	83614431	.	C	CTT	0	PASS	DP=47;GPV=1;SPV=0.29515;SS=2;SSC=5;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:10,6:2,1:8,5
+chr8	84047207	.	TA	T	0	PASS	DP=21;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:1,2:0,0:1,2
+chr8	84112667	.	A	T	0	PASS	DP=84;GPV=1;SPV=4.1518e-06;SS=2;SSC=53;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:13,9:14,7
+chr8	84379753	.	C	T	0	PASS	DP=70;GPV=1;SPV=1.2075e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,13:16,5:4,8
+chr8	84732683	.	T	TATATATATATATATATATATACACACAC	0	PASS	DP=51;GPV=1;SPV=0.062277;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:24,5:8,3:16,2
+chr8	85190497	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,5:3,3:4,2
+chr8	85805171	.	TC	T	0	PASS	DP=99;GPV=1;SPV=0.028654;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:38,6:20,5:18,1
+chr8	86145349	.	AGAAG	A	0	PASS	DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:8,3:3,1
+chr8	87707682	.	TA	T	0	PASS	DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:11,2:5,3
+chr8	88479820	.	C	A	0	PASS	DP=75;GPV=1;SPV=4.0752e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:22,22:9,8:13,14
+chr8	88491755	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.057106;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:15,3:16,1
+chr8	88701673	.	C	G	0	PASS	DP=61;GPV=1;SPV=0.0021594;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:8,14:4,5:4,9
+chr8	89201130	.	A	G	0	PASS	DP=89;GPV=1;SPV=0.016119;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:40,6:16,4:24,2
+chr8	89359069	.	T	A	0	PASS	DP=80;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:23,5:6,3:17,2
+chr8	91743919	.	CA	C	0	PASS	DP=39;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:20,5:16,3:4,2
+chr8	91761495	.	GTTT	G	0	PASS	DP=50;GPV=1;SPV=0.023126;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:19,9:11,8:8,1
+chr8	92005985	.	T	TACACACACACACAC	0	PASS	DP=51;GPV=1;SPV=0.00084741;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:14,8:6,4:8,4
+chr8	95092578	.	CTTT	C	0	PASS	DP=30;GPV=1;SPV=0.015172;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:4,4:3,2
+chr8	96375594	.	A	T	0	PASS	DP=58;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:5,2:4,1:1,1
+chr8	96663978	.	A	G	0	PASS	DP=85;GPV=1;SPV=5.135e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:27,21:12,8:15,13
+chr8	99906834	.	T	TTTTC	0	PASS	DP=71;GPV=1;SPV=0.049775;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:13,4:15,7
+chr8	101338458	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,7:6,5:8,2
+chr8	102830650	.	CA	C	0	PASS	DP=57;GPV=1;SPV=0.17271;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,4:20,2:12,2
+chr8	102868226	.	C	CT	0	PASS	DP=54;GPV=1;SPV=0.0035224;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,14:12,7:5,7
+chr8	105514307	.	CTTTTTTTTTTTT	C	0	PASS	DP=20;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:4,4:3,2:1,2
+chr8	105998895	.	C	CA	0	PASS	DP=43;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,8:12,7:5,1
+chr8	106864978	.	CTT	C	0	PASS	DP=27;GPV=1;SPV=0.0219;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:7,5:3,2
+chr8	106953979	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:1,4:0,1:1,3
+chr8	108098097	.	A	AAG	0	PASS	DP=37;GPV=1;SPV=0.043422;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:15,4:2,2
+chr8	109311561	.	A	G	0	PASS	DP=39;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:8,2:9,3
+chr8	111010596	.	T	A	0	PASS	DP=23;GPV=1;SPV=0.020124;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:3,4:4,3
+chr8	112279013	.	A	C	0	PASS	DP=62;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:17,5:9,3:8,2
+chr8	112755352	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.0307;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:32,7:15,4:17,3
+chr8	114171555	.	C	CT	0	PASS	DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,5:24,4:10,1
+chr8	116277942	.	G	A	0	PASS	DP=79;GPV=1;SPV=5.6774e-08;SS=2;SSC=72;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:18,17:12,10:6,7
+chr8	116366086	.	A	AG	0	PASS	DP=29;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:2,4:2,1:0,3
+chr8	116813168	.	T	TA	0	PASS	DP=41;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:4,6:8,2
+chr8	117384014	.	A	T	0	PASS	DP=73;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:2,4:1,2:1,2
+chr8	119162057	.	A	T	0	PASS	DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:6,1:9,3
+chr8	120055647	.	C	CT	0	PASS	DP=35;GPV=1;SPV=0.0056039;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,9:6,5:6,4
+chr8	120919173	.	C	CTATA	0	PASS	DP=57;GPV=1;SPV=0.0011313;SS=2;SSC=29;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:17,16:7,11:10,5
+chr8	121268067	.	A	T	0	PASS	DP=90;GPV=1;SPV=0.00043374;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:34,10:18,6:16,4
+chr8	121843518	.	G	A	0	PASS	DP=94;GPV=1;SPV=8.3852e-10;SS=2;SSC=90;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:24,27:17,19:7,8
+chr8	124296254	.	CA	C	0	PASS	DP=51;GPV=1;SPV=0.0025397;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:17,12:12,9:5,3
+chr8	124409811	.	CAAAAAAAAA	C	0	PASS	DP=28;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,5:3,4:5,1
+chr8	125502794	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:14,5:4,1:10,4
+chr8	126824610	.	TTTTG	T	0	PASS	DP=19;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,5:1,1:2,4
+chr8	127267109	.	C	CT	0	PASS	DP=58;GPV=1;SPV=0.002513;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:24,10:18,8:6,2
+chr8	127528139	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.037605;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:10,1:7,5
+chr8	129014802	.	A	AACAC	0	PASS	DP=49;GPV=1;SPV=0.0075692;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,8:7,5:4,3
+chr8	129877663	.	GGT	G	0	PASS	DP=50;GPV=1;SPV=0.39286;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:9,4:2,2:7,2
+chr8	130041968	.	T	A	0	PASS	DP=66;GPV=1;SPV=0.0055944;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:37:2,7:1,3:1,4
+chr8	131369290	.	T	A	0	PASS	DP=83;GPV=1;SPV=2.0665e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:24,15:13,7:11,8
+chr8	131377354	.	G	GTTTTTTTTTT	0	PASS	DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:11,3:6,1
+chr8	131731718	.	A	G	0	PASS	DP=53;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,4:12,3:9,1
+chr8	132155056	.	G	A	0	PASS	DP=76;GPV=1;SPV=1.1019e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:26,17:12,12:14,5
+chr8	132498035	.	T	TCACACACA	0	PASS	DP=43;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:6,9:5,5:1,4
+chr8	132853447	.	GTT	G	0	PASS	DP=64;GPV=1;SPV=0.082408;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:15,1:16,3
+chr8	133067867	.	A	G	0	PASS	DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,6:8,3:2,3
+chr8	136066837	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.036365;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:16,6:5,2
+chr8	136080861	.	G	A	0	PASS	DP=92;GPV=1;SPV=1.8161e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:9,10:18,9
+chr8	137797438	.	T	C	0	PASS	DP=84;GPV=1;SPV=2.0159e-07;SS=2;SSC=66;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:21,16:8,11:13,5
+chr8	140646440	.	C	CAA	0	PASS	DP=54;GPV=1;SPV=0.0085309;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:21,9:18,8:3,1
+chr8	140877025	.	CT	C	0	PASS	DP=22;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,4:3,2:3,2
+chr8	141777461	.	G	A	0	PASS	DP=98;GPV=1;SPV=0.00011358;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:37,12:18,3:19,9
+chr8	141955673	.	T	TAC	0	PASS	DP=73;GPV=1;SPV=0.044156;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:28,4:10,3:18,1
+chr8	142222500	.	TCATC	T	0	PASS	DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:6,4:2,3:4,1
+chr8	143816728	.	C	T	0	PASS	DP=108;GPV=1;SPV=3.4274e-09;SS=2;SSC=84;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:30,23:15,7:15,16
+chr8	143865501	.	G	A	0	PASS	DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:0,3:11,1
+chr8	144297901	.	A	G	0	PASS	DP=103;GPV=1;SPV=1.6512e-08;SS=2;SSC=77;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:29,21:14,5:15,16
+chr8	144953029	.	T	C	0	PASS	DP=44;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:4,2:3,1:1,1
+chr9	117800	.	G	T	0	PASS	DP=132;GPV=1;SPV=0.0164;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:66:58,8:30,2:28,6
+chr9	374453	.	G	T	0	PASS	DP=33;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:7,2:1,4
+chr9	954556	.	G	T	0	PASS	DP=70;GPV=1;SPV=2.7838e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:18,19:7,11:11,8
+chr9	1660092	.	C	T	0	PASS	DP=91;GPV=1;SPV=4.8849e-05;SS=2;SSC=43;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:11,7:18,4
+chr9	5080892	.	CT	C	0	PASS	DP=31;GPV=1;SPV=0.0061493;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:10,10:7,7:3,3
+chr9	5131435	.	A	ATTTTTTTT	0	PASS	DP=52;GPV=1;SPV=0.066061;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:28,6:17,4:11,2
+chr9	10065141	.	T	TAGAAAGAAAGAAAGAAAGAA	0	PASS	DP=62;GPV=1;SPV=0.012389;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,8:12,4:11,4
+chr9	10908115	.	C	T	0	PASS	DP=82;GPV=1;SPV=2.1076e-06;SS=2;SSC=56;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:18,10:9,9
+chr9	11546252	.	GT	G	0	PASS	DP=109;GPV=1;SPV=3.0028e-06;SS=2;SSC=55;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:39,17:18,9:21,8
+chr9	12257671	.	C	A	0	PASS	DP=73;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:39:1,3:1,2:0,1
+chr9	12745528	.	CTTTTT	C	0	PASS	DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:6,3:1,1
+chr9	13981005	.	A	G	0	PASS	DP=62;GPV=1;SPV=0.13232;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:14,1:20,3
+chr9	14825488	.	CAA	C	0	PASS	DP=20;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:4,6:2,1:2,5
+chr9	17996165	.	AT	A	0	PASS	DP=65;GPV=1;SPV=8.9651e-09;SS=2;SSC=80;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:13,24:11,12:2,12
+chr9	18626806	.	TTTC	T	0	PASS	DP=58;GPV=1;SPV=0.01552;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:6,2:14,5
+chr9	19226767	.	C	CA	0	PASS	DP=27;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:9,4:6,2:3,2
+chr9	20097720	.	ATTTTTTTTTTTT	A	0	PASS	DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:6,2:4,2
+chr9	22101703	.	T	C	0	PASS	DP=69;GPV=1;SPV=0.029148;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:14,8:4,4:10,4
+chr9	22552406	.	G	A	0	PASS	DP=86;GPV=1;SPV=0.00010628;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:34,14:23,7:11,7
+chr9	24347063	.	A	T	0	PASS	DP=96;GPV=1;SPV=3.4048e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:32,16:15,7:17,9
+chr9	25152059	.	T	TAC	0	PASS	DP=59;GPV=1;SPV=0.013373;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,8:9,5:7,3
+chr9	25191113	.	A	T	0	PASS	DP=74;GPV=1;SPV=8.3077e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,15:16,5:12,10
+chr9	25686026	.	C	CGTGT	0	PASS	DP=63;GPV=1;SPV=0.015574;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,11:13,5:7,6
+chr9	25786770	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:4,4:2,3:2,1
+chr9	26037639	.	G	GCACACACA	0	PASS	DP=67;GPV=1;SPV=0.013487;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:10,14:8,9:2,5
+chr9	26296673	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:3,7:0,6:3,1
+chr9	30751042	.	T	TTA	0	PASS	DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:7,7:4,4:3,3
+chr9	30885030	.	C	CT	0	PASS	DP=43;GPV=1;SPV=0.043511;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,9:14,8:4,1
+chr9	30960417	.	T	G	0	PASS	DP=65;GPV=1;SPV=7.5529e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:16,12:9,6:7,6
+chr9	31513934	.	A	ATT	0	PASS	DP=41;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:15,8:7,3:8,5
+chr9	32224004	.	T	A	0	PASS	DP=73;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:4,4:0,2:4,2
+chr9	32324105	.	TA	T	0	PASS	DP=56;GPV=1;SPV=0.028693;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:10,4:15,6
+chr9	32750824	.	AG	A	0	PASS	DP=57;GPV=1;SPV=0.038941;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:30,7:22,1:8,6
+chr9	34005434	.	CA	C	0	PASS	DP=60;GPV=1;SPV=0.016449;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:18,11:16,8:2,3
+chr9	34725072	.	T	A	0	PASS	DP=91;GPV=1;SPV=0.032223;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:33,9:18,4:15,5
+chr9	36512491	.	A	AAAATATATATG	0	PASS	DP=44;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:11,6:4,2:7,4
+chr9	36512530	.	A	ATATATG	0	PASS	DP=44;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:6,10:1,3:5,7
+chr9	37593507	.	C	CTTT	0	PASS	DP=29;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:6,7:5,6:1,1
+chr9	37985881	.	C	T	0	PASS	DP=96;GPV=1;SPV=8.8749e-09;SS=2;SSC=80;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:25,21:7,5:18,16
+chr9	39062770	.	T	G	0	PASS	DP=180;GPV=1;SPV=0.024377;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:79,13:37,5:42,8
+chr9	39077977	.	G	C	0	PASS	DP=85;GPV=1;SPV=0.031136;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:22,5:14,2
+chr9	39078499	.	A	T	0	PASS	DP=144;GPV=1;SPV=0.027105;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:91:72,19:33,10:39,9
+chr9	39082641	.	C	T	0	PASS	DP=144;GPV=1;SPV=0.0033577;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:61,13:40,8:21,5
+chr9	39447377	.	C	G	0	PASS	DP=119;GPV=1;SPV=0.031831;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:62:51,11:26,8:25,3
+chr9	39471618	.	A	C	0	PASS	DP=50;GPV=1;SPV=0.022424;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:7,4:13,5
+chr9	39802183	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:7,4:0,0
+chr9	39817969	.	A	C	0	PASS	DP=40;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:2,0:20,4
+chr9	39822306	.	G	C	0	PASS	DP=57;GPV=1;SPV=0.023254;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:3,1:16,5
+chr9	39856617	.	C	T	0	PASS	DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:0,0:7,4
+chr9	39892865	.	T	C	0	PASS	DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:7,2:7,1:0,1
+chr9	40199857	.	G	T	0	PASS	DP=90;GPV=1;SPV=0.0028381;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:32,15:25,13:7,2
+chr9	40285602	.	A	G	0	PASS	DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:14,4:14,4:0,0
+chr9	40335822	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.046295;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,7:6,2
+chr9	40353883	.	G	C	0	PASS	DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:14,4:1,0
+chr9	40649247	.	G	A	0	PASS	DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:8,4:0,0
+chr9	40721745	.	G	A	0	PASS	DP=106;GPV=1;SPV=0.02489;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:43,11:21,7:22,4
+chr9	40781006	.	T	C	0	PASS	DP=79;GPV=1;SPV=0.049128;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:13,2:21,2
+chr9	40829629	.	G	A	0	PASS	DP=62;GPV=1;SPV=0.00042879;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:7,5:17,8
+chr9	40863176	.	C	CTT	0	PASS	DP=98;GPV=1;SPV=0.0457;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:40,10:17,9:23,1
+chr9	40957019	.	C	T	0	PASS	DP=243;GPV=1;SPV=0.0041396;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:144:120,24:64,14:56,10
+chr9	40957044	.	C	G	0	PASS	DP=274;GPV=1;SPV=0.0025752;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:161:133,27:65,19:68,8
+chr9	40994477	.	G	A	0	PASS	DP=245;GPV=1;SPV=0.049069;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:105,22:46,9:59,13
+chr9	40996429	.	C	A	0	PASS	DP=207;GPV=1;SPV=0.0079392;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:124:97,27:35,7:62,20
+chr9	41009910	.	T	C	0	PASS	DP=185;GPV=1;SPV=0.0011165;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:86,10:40,7:46,3
+chr9	41092878	.	G	A	0	PASS	DP=114;GPV=1;SPV=0.0037018;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:58:42,16:23,10:19,6
+chr9	41219934	.	A	G	0	PASS	DP=227;GPV=1;SPV=0.012217;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:91,23:65,16:26,7
+chr9	41260339	.	C	G	0	PASS	DP=159;GPV=1;SPV=0.027233;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:77:60,17:35,10:25,7
+chr9	41295625	.	G	T	0	PASS	DP=144;GPV=1;SPV=0.046353;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:83:65,18:30,5:35,13
+chr9	41456106	.	T	C	0	PASS	DP=51;GPV=1;SPV=0.0033365;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,11:7,9:7,2
+chr9	41524691	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.03962;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:42,12:24,9:18,3
+chr9	41543438	.	A	G	0	PASS	DP=67;GPV=1;SPV=0.01079;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:18,7:8,5:10,2
+chr9	41619182	.	CA	C	0	PASS	DP=121;GPV=1;SPV=0.023987;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:45,11:26,9:19,2
+chr9	41629752	.	G	A	0	PASS	DP=197;GPV=1;SPV=0.011889;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:106:85,21:49,14:36,7
+chr9	41654836	.	G	T	0	PASS	DP=109;GPV=1;SPV=0.01466;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:44,15:22,4:22,11
+chr9	41754427	.	C	A	0	PASS	DP=189;GPV=1;SPV=0.00039703;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:104:73,31:38,17:35,14
+chr9	41758406	.	G	C	0	PASS	DP=58;GPV=1;SPV=0.015213;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:13,7:10,2
+chr9	41781296	.	A	C	0	PASS	DP=166;GPV=1;SPV=0.026722;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:78,10:46,6:32,4
+chr9	41850515	.	C	T	0	PASS	DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:0,0:20,4
+chr9	41861347	.	G	T	0	PASS	DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:6,2:0,0:6,2
+chr9	42030750	.	C	CAGAGAGAGAGAGAGAGAG	0	PASS	DP=36;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:9,4:9,4:0,0
+chr9	42334258	.	A	G	0	PASS	DP=80;GPV=1;SPV=0.046134;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:36,7:16,1:20,6
+chr9	42930756	.	G	T	0	PASS	DP=94;GPV=1;SPV=0.017302;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:47,7:24,4:23,3
+chr9	43299406	.	A	T	0	PASS	DP=161;GPV=1;SPV=0.0099979;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:90:64,18:45,13:19,5
+chr9	43399857	.	T	C	0	PASS	DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:1,0:26,4
+chr9	43620725	.	A	T	0	PASS	DP=307;GPV=1;SPV=0.045298;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:149:129,20:81,8:48,12
+chr9	43698558	.	C	G	0	PASS	DP=168;GPV=1;SPV=0.037934;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:93:81,12:58,8:23,4
+chr9	43804025	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:28,4:0,0
+chr9	43804413	.	C	A	0	PASS	DP=80;GPV=1;SPV=0.032961;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:28,11:12,4:16,7
+chr9	43804414	.	A	C	0	PASS	DP=82;GPV=1;SPV=0.018813;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:28,12:13,4:15,8
+chr9	43842933	.	A	T	0	PASS	DP=194;GPV=1;SPV=0.010739;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:96:79,17:24,4:55,13
+chr9	44305562	.	T	A	0	PASS	DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:19,4:1,0
+chr9	44305563	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:20,4:1,0
+chr9	44521259	.	G	T	0	PASS	DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:12,1:8,3
+chr9	44521710	.	C	T	0	PASS	DP=64;GPV=1;SPV=0.012087;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:26,6:11,3:15,3
+chr9	44556710	.	A	C	0	PASS	DP=21;GPV=1;SPV=0.0058007;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:3,8:3,1:0,7
+chr9	44579928	.	G	T	0	PASS	DP=154;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:80:70,10:54,9:16,1
+chr9	44737074	.	T	C	0	PASS	DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:8,5:0,1
+chr9	45123818	.	T	G	0	PASS	DP=162;GPV=1;SPV=0.034022;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:90,10:49,4:41,6
+chr9	45502833	.	G	C	0	PASS	DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:23,4:1,0
+chr9	60569052	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:22,5:8,3:14,2
+chr9	60638466	.	A	G	0	PASS	DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:18,4:1,0
+chr9	60653336	.	G	C	0	PASS	DP=432;GPV=1;SPV=0.044742;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:219:192,27:8,1:184,26
+chr9	61869465	.	TC	T	0	PASS	DP=87;GPV=1;SPV=0.033522;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:33,6:19,5:14,1
+chr9	62801044	.	G	C	0	PASS	DP=391;GPV=1;SPV=0.0059915;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:202:177,25:87,12:90,13
+chr9	62813372	.	A	G	0	PASS	DP=229;GPV=1;SPV=0.018566;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:123:103,20:56,8:47,12
+chr9	62813624	.	T	C	0	PASS	DP=225;GPV=1;SPV=0.0082734;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:127:111,16:66,12:45,4
+chr9	62821722	.	A	T	0	PASS	DP=221;GPV=1;SPV=0.033791;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:91,17:41,10:50,7
+chr9	62830190	.	A	T	0	PASS	DP=71;GPV=1;SPV=0.021689;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:29,11:8,5:21,6
+chr9	62837642	.	G	T	0	PASS	DP=246;GPV=1;SPV=0.045816;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:120:100,20:50,8:50,12
+chr9	62883872	.	A	T	0	PASS	DP=89;GPV=1;SPV=0.0083664;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:45,9:37,7:8,2
+chr9	62893729	.	T	C	0	PASS	DP=52;GPV=1;SPV=0.1356;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:32,6:9,1:23,5
+chr9	62903251	.	G	A	0	PASS	DP=107;GPV=1;SPV=0.034686;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:65:53,12:27,6:26,6
+chr9	63398809	.	G	A	0	PASS	DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:0,2:4,2
+chr9	63701977	.	G	A	0	PASS	DP=74;GPV=1;SPV=0.02072;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:34,6:13,3:21,3
+chr9	63756111	.	G	T	0	PASS	DP=141;GPV=1;SPV=0.03921;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:82:69,13:44,7:25,6
+chr9	63759339	.	G	A	0	PASS	DP=199;GPV=1;SPV=0.038714;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:99:86,13:32,2:54,11
+chr9	63868480	.	G	A	0	PASS	DP=137;GPV=1;SPV=0.019296;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:56,13:46,9:10,4
+chr9	64025479	.	T	A	0	PASS	DP=89;GPV=1;SPV=0.012169;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:32,14:23,10:9,4
+chr9	64119933	.	T	A	0	PASS	DP=336;GPV=1;SPV=0.0001077;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:166:140,26:50,9:90,17
+chr9	64416413	.	G	A	0	PASS	DP=58;GPV=1;SPV=0.048123;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:30,6:22,4:8,2
+chr9	64436111	.	T	G	0	PASS	DP=81;GPV=1;SPV=0.048085;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:40,13:8,4:32,9
+chr9	64513266	.	C	T	0	PASS	DP=52;GPV=1;SPV=0.0097768;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:14,8:8,2:6,6
+chr9	64598624	.	G	GTATA	0	PASS	DP=63;GPV=1;SPV=0.13232;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:34,4:15,2:19,2
+chr9	64768679	.	G	T	0	PASS	DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,7:3,2:3,5
+chr9	64788946	.	A	G	0	PASS	DP=200;GPV=1;SPV=0.044279;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:114:96,18:70,12:26,6
+chr9	64907503	.	G	T	0	PASS	DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:6,2:7,2
+chr9	64910453	.	CTTTT	C	0	PASS	DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:10,4:7,2:3,2
+chr9	65187717	.	A	G	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:0,0:8,4
+chr9	65276523	.	AT	A	0	PASS	DP=69;GPV=1;SPV=0.075692;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:37,5:28,4:9,1
+chr9	65276529	.	C	T	0	PASS	DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:28,3:7,1
+chr9	65276582	.	A	T	0	PASS	DP=54;GPV=1;SPV=0.075047;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:28,5:26,4:2,1
+chr9	65293096	.	C	T	0	PASS	DP=54;GPV=1;SPV=0.047135;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:29,7:10,1:19,6
+chr9	65306269	.	G	C	0	PASS	DP=27;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:3,3:10,2
+chr9	65379043	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.045034;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:32,10:18,9:14,1
+chr9	65573606	.	A	G	0	PASS	DP=75;GPV=1;SPV=0.054338;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:33,4:19,1:14,3
+chr9	65967880	.	G	T	0	PASS	DP=58;GPV=1;SPV=0.012629;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:21,8:5,1:16,7
+chr9	65967881	.	C	T	0	PASS	DP=57;GPV=1;SPV=0.017466;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:4,1:16,6
+chr9	66076158	.	C	T	0	PASS	DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:13,4:10,3:3,1
+chr9	66079607	.	C	T	0	PASS	DP=215;GPV=1;SPV=0.03446;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:91,18:44,8:47,10
+chr9	66158767	.	G	C	0	PASS	DP=127;GPV=1;SPV=0.047289;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:69:58,11:20,2:38,9
+chr9	66160804	.	CA	C	0	PASS	DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:21,4:2,0
+chr9	66161100	.	C	T	0	PASS	DP=137;GPV=1;SPV=0.0012909;SS=2;SSC=28;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:75:51,24:32,17:19,7
+chr9	66170499	.	C	A	0	PASS	DP=205;GPV=1;SPV=0.016945;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:108:87,21:52,10:35,11
+chr9	66182996	.	T	C	0	PASS	DP=64;GPV=1;SPV=0.031008;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:31,6:21,2:10,4
+chr9	66197438	.	G	A	0	PASS	DP=104;GPV=1;SPV=0.0048003;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:43,10:22,9:21,1
+chr9	66257253	.	G	A	0	PASS	DP=19;GPV=1;SPV=0.003096;SS=2;SSC=25;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:3,6:2,1:1,5
+chr9	66274253	.	T	C	0	PASS	DP=142;GPV=1;SPV=0.012396;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:65,9:37,3:28,6
+chr9	66697103	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.025558;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:34,11:17,5:17,6
+chr9	66705158	.	C	CAA	0	PASS	DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:17,4:6,2:11,2
+chr9	66705530	.	C	T	0	PASS	DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:9:6,3:0,0:6,3
+chr9	66737443	.	C	T	0	PASS	DP=110;GPV=1;SPV=0.019877;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:56:43,13:14,5:29,8
+chr9	66740151	.	AAC	A	0	PASS	DP=44;GPV=1;SPV=0.0143;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:17,6:11,5:6,1
+chr9	66961920	.	C	G	0	PASS	DP=69;GPV=1;SPV=0.00021015;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:26,13:15,6:11,7
+chr9	67008709	.	C	A	0	PASS	DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:19,4:0,0
+chr9	67010407	.	C	T	0	PASS	DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:11,8:2,2:9,6
+chr9	67109278	.	G	C	0	PASS	DP=56;GPV=1;SPV=7.6789e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:11,14:4,4:7,10
+chr9	67168505	.	T	A	0	PASS	DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:4,1:4,3
+chr9	67604241	.	G	A	0	PASS	DP=141;GPV=1;SPV=8.5423e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:72:56,16:17,9:39,7
+chr9	67645801	.	G	A	0	PASS	DP=36;GPV=1;SPV=0.023193;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:1,1:11,7
+chr9	67687829	.	A	T	0	PASS	DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:1,3:12,3
+chr9	67910316	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.013816;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:18,5:2,2
+chr9	67916278	.	T	C	0	PASS	DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:15,4:0,0
+chr9	70301415	.	G	T	0	PASS	DP=82;GPV=1;SPV=3.279e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:26,25:11,14:15,11
+chr9	70517355	.	TTTTTTTTTGTTTGTTTGTTTG	T	0	PASS	DP=47;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:4,2:0,0:4,2
+chr9	72606947	.	A	ATATGTATG	0	PASS	DP=54;GPV=1;SPV=0.025544;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:24,11:13,8:11,3
+chr9	73490320	.	C	T	0	PASS	DP=83;GPV=1;SPV=4.219e-08;SS=2;SSC=73;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:19,17:7,9:12,8
+chr9	75495712	.	TC	T	0	PASS	DP=60;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:3,2:1,1:2,1
+chr9	77840230	.	T	C	0	PASS	DP=95;GPV=1;SPV=2.0023e-09;SS=2;SSC=86;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:23,22:10,8:13,14
+chr9	79855857	.	C	CA	0	PASS	DP=46;GPV=1;SPV=0.013657;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:11,6:10,4:1,2
+chr9	80644179	.	G	A	0	PASS	DP=56;GPV=1;SPV=0.018479;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:6,5:4,3:2,2
+chr9	81254683	.	CT	C	0	PASS	DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:8,5:4,3
+chr9	82847149	.	T	A	0	PASS	DP=78;GPV=1;SPV=0.020423;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:36,6:16,5:20,1
+chr9	83160690	.	G	A	0	PASS	DP=78;GPV=1;SPV=5.7558e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:24,15:16,9:8,6
+chr9	83372369	.	C	G	0	PASS	DP=62;GPV=1;SPV=0.0066382;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:11,5:5,2:6,3
+chr9	84192814	.	CTT	C	0	PASS	DP=53;GPV=1;SPV=0.064826;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:23,4:14,2:9,2
+chr9	85680513	.	G	A	0	PASS	DP=66;GPV=1;SPV=5.765e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:23,15:9,4:14,11
+chr9	86176985	.	A	C	0	PASS	DP=95;GPV=1;SPV=5.6241e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:30,14:17,11:13,3
+chr9	86405912	.	A	G	0	PASS	DP=68;GPV=1;SPV=3.1007e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:20,12:8,7:12,5
+chr9	87430255	.	G	A	0	PASS	DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,9:6,4:2,5
+chr9	87540183	.	CT	C	0	PASS	DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:10,7:8,6:2,1
+chr9	87831691	.	C	G	0	PASS	DP=81;GPV=1;SPV=0.038906;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:30,6:19,4:11,2
+chr9	87853699	.	A	T	0	PASS	DP=70;GPV=1;SPV=0.030612;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:24,7:14,3:10,4
+chr9	88011352	.	C	CTTTTTT	0	PASS	DP=21;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:3,9:0,6:3,3
+chr9	88150465	.	G	A	0	PASS	DP=91;GPV=1;SPV=1.4701e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:23,20:10,7:13,13
+chr9	88589008	.	T	C	0	PASS	DP=74;GPV=1;SPV=2.1205e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:8,8:16,6
+chr9	89182535	.	A	C	0	PASS	DP=52;GPV=1;SPV=0.0092996;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:20,11:11,5:9,6
+chr9	96502595	.	T	A	0	PASS	DP=54;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:4,2:3,1:1,1
+chr9	97772414	.	G	A	0	PASS	DP=107;GPV=1;SPV=3.4237e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:53:37,16:20,8:17,8
+chr9	100932673	.	C	CTT	0	PASS	DP=42;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,8:6,5:6,3
+chr9	102410335	.	A	C	0	PASS	DP=68;GPV=1;SPV=0.0018783;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,8:17,4:8,4
+chr9	102966026	.	A	ATTT	0	PASS	DP=35;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:4,4:3,3:1,1
+chr9	104059407	.	A	G	0	PASS	DP=52;GPV=1;SPV=0.13206;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,7:11,3:9,4
+chr9	104659686	.	C	CT	0	PASS	DP=32;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:12,8:11,6:1,2
+chr9	104995718	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:11,2:7,2
+chr9	105485533	.	G	GT	0	PASS	DP=44;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:17,5:8,4:9,1
+chr9	108466081	.	T	C	0	PASS	DP=67;GPV=1;SPV=0.068133;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:24,2:11,3
+chr9	109021507	.	G	GT	0	PASS	DP=79;GPV=1;SPV=0.03863;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:41,6:22,4:19,2
+chr9	109073856	.	G	GT	0	PASS	DP=41;GPV=1;SPV=0.0018191;SS=2;SSC=27;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,9:9,6:4,3
+chr9	109260410	.	CTT	C	0	PASS	DP=34;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:10,2:3,2
+chr9	110745259	.	A	C	0	PASS	DP=73;GPV=1;SPV=0.011348;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:37,9:18,3:19,6
+chr9	111641320	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:24,3:11,1
+chr9	115449416	.	T	C	0	PASS	DP=28;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,1:6,6
+chr9	116048961	.	G	A	0	PASS	DP=72;GPV=1;SPV=9.1856e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:19,12:11,9:8,3
+chr9	116088504	.	C	CAA	0	PASS	DP=25;GPV=1;SPV=0.44608;SS=2;SSC=3;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,4:10,4:1,0
+chr9	116656682	.	CA	C	0	PASS	DP=38;GPV=1;SPV=0.0087022;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:8,3:3,2
+chr9	118714270	.	C	CT	0	PASS	DP=63;GPV=1;SPV=0.093615;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:35,5:7,1:28,4
+chr9	118759933	.	A	AT	0	PASS	DP=51;GPV=1;SPV=0.016518;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:24,8:16,5:8,3
+chr9	118846936	.	A	G	0	PASS	DP=74;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:22,4:11,2:11,2
+chr9	118948756	.	T	A	0	PASS	DP=75;GPV=1;SPV=5.3601e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:20,17:13,9:7,8
+chr9	119140426	.	A	G	0	PASS	DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:11,4:3,2:8,2
+chr9	119172303	.	C	T	0	PASS	DP=69;GPV=1;SPV=7.0959e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:13,4:12,11
+chr9	119412506	.	G	A	0	PASS	DP=76;GPV=1;SPV=0.0011745;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:10,4:21,6
+chr9	119999714	.	A	C	0	PASS	DP=38;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:5,3:3,1:2,2
+chr9	121228422	.	ATATTT	A	0	PASS	DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:5,3:3,1
+chr9	121333566	.	T	TA	0	PASS	DP=96;GPV=1;SPV=6.5058e-05;SS=2;SSC=41;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:36,13:15,4:21,9
+chr9	124366088	.	A	T	0	PASS	DP=84;GPV=1;SPV=0.00040604;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:31,10:19,5:12,5
+chr9	126202168	.	C	T	0	PASS	DP=49;GPV=1;SPV=0.0063642;SS=2;SSC=21;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:16,9:4,5:12,4
+chr9	126736711	.	A	ATATATG	0	PASS	DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:14,5:11,2:3,3
+chr9	126960219	.	C	CCCTT	0	PASS	DP=28;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,4:0,0:13,4
+chr9	128818108	.	C	CAAAAAA	0	PASS	DP=53;GPV=1;SPV=0.0027222;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:20,9:15,8:5,1
+chr9	128954419	.	C	T	0	PASS	DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:21,4:15,2:6,2
+chr9	129393660	.	C	T	0	PASS	DP=39;GPV=1;SPV=0.20979;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:6,4:1,3:5,1
+chr9	129410444	.	T	TCAC	0	PASS	DP=30;GPV=1;SPV=0.021073;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,5:1,4:9,1
+chr9	130062095	.	T	C	0	PASS	DP=65;GPV=1;SPV=0.019651;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:29,6:15,1:14,5
+chr9	130071035	.	C	CT	0	PASS	DP=26;GPV=1;SPV=0.0072239;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:2,5:0,4:2,1
+chr9	130114029	.	CT	C	0	PASS	DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:5,8:4,7:1,1
+chr9	130753428	.	T	C	0	PASS	DP=42;GPV=1;SPV=0.011329;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:14,9:8,7:6,2
+chr9	131587223	.	C	A	0	PASS	DP=53;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:3,2:3,2:0,0
+chr9	131964347	.	G	C	0	PASS	DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:4,4:2,1:2,3
+chr9	132333394	.	AAAAG	A	0	PASS	DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,2:9,2
+chr9	132396675	.	T	G	0	PASS	DP=71;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:7,4:2,2:5,2
+chr9	132930587	.	C	CAA	0	PASS	DP=36;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:12,4:11,3:1,1
+chr9	134025267	.	C	CAG	0	PASS	DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:2,4:4,1
+chr9	134513183	.	C	CT	0	PASS	DP=21;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,5:4,3:2,2
+chr9	135208007	.	A	G	0	PASS	DP=66;GPV=1;SPV=0.13122;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:25,5:13,3:12,2
+chr9	136573344	.	G	A	0	PASS	DP=88;GPV=1;SPV=1.5034e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:24,14:14,5:10,9
+chr9	137517239	.	T	A	0	PASS	DP=18;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:7,3:1,1:6,2
+chr9	138207134	.	G	A	0	PASS	DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:9,1:9,3
+chr9	138228081	.	C	G	0	PASS	DP=42;GPV=1;SPV=0.026333;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,8:16,6:4,2
+chrM	12283	.	G	A	0	PASS	DP=14647;GPV=1;SPV=0;SS=2;SSC=255;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:7264:4867,2396:1986,1012:2881,1384
+chrX	2846056	.	T	TATATATATA	0	PASS	DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,4:3,1:2,3
+chrX	3116325	.	G	C	0	PASS	DP=59;GPV=1;SPV=0.044988;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:17,2:7,2
+chrX	3152301	.	G	A	0	PASS	DP=70;GPV=1;SPV=0.00011765;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:24,12:10,4:14,8
+chrX	3598596	.	G	A	0	PASS	DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:9,5:5,2:4,3
+chrX	3600513	.	G	GTGTAAAGTTTCAGTCA	0	PASS	DP=16;GPV=1;SPV=0.0006993;SS=2;SSC=31;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:8:0,8:0,5:0,3
+chrX	3685264	.	C	CT	0	PASS	DP=40;GPV=1;SPV=0.046139;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:19,6:6,1:13,5
+chrX	3688872	.	TA	T	0	PASS	DP=64;GPV=1;SPV=0.0042329;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:24,7:14,5:10,2
+chrX	3788573	.	A	C	0	PASS	DP=48;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:5,2:1,1:4,1
+chrX	3827170	.	A	G	0	PASS	DP=55;GPV=1;SPV=0.00062132;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:15,16:8,6:7,10
+chrX	4293487	.	C	T	0	PASS	DP=63;GPV=1;SPV=0.034373;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:24,4:13,3:11,1
+chrX	4383022	.	CTTTTTTTTTTT	C	0	PASS	DP=22;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,4:2,3:5,1
+chrX	4942192	.	AG	A	0	PASS	DP=71;GPV=1;SPV=0.07597;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:14,2:20,2
+chrX	4942199	.	T	C	0	PASS	DP=71;GPV=1;SPV=0.07597;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:34,4:16,2:18,2
+chrX	5809652	.	G	A	0	PASS	DP=81;GPV=1;SPV=7.7888e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:26,15:12,9:14,6
+chrX	5832883	.	C	T	0	PASS	DP=41;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:11,9:0,4:11,5
+chrX	5847352	.	T	TAG	0	PASS	DP=34;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,5:4,4:9,1
+chrX	6055094	.	G	A	0	PASS	DP=94;GPV=1;SPV=0.00011108;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:33,11:17,5:16,6
+chrX	6510956	.	G	A	0	PASS	DP=83;GPV=1;SPV=6.7349e-06;SS=2;SSC=51;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:24,13:13,7:11,6
+chrX	6900575	.	G	T	0	PASS	DP=49;GPV=1;SPV=0.048243;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:20,7:7,6:13,1
+chrX	7275929	.	C	CT	0	PASS	DP=58;GPV=1;SPV=0.0033651;SS=2;SSC=24;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:18,13:9,8:9,5
+chrX	7279325	.	G	A	0	PASS	DP=50;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:7,2:4,1:3,1
+chrX	8388917	.	A	G	0	PASS	DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:12,1:13,3
+chrX	9411334	.	T	G	0	PASS	DP=267;GPV=1;SPV=0.031284;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:138:119,19:56,12:63,7
+chrX	9792178	.	C	T	0	PASS	DP=53;GPV=1;SPV=0.03024;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:12,2:7,2
+chrX	11320766	.	T	TAC	0	PASS	DP=63;GPV=1;SPV=0.025477;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:21,10:12,5:9,5
+chrX	11323811	.	G	C	0	PASS	DP=75;GPV=1;SPV=1.2794e-07;SS=2;SSC=68;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:20,21:13,9:7,12
+chrX	12773205	.	C	A	0	PASS	DP=90;GPV=1;SPV=1.0504e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:32,16:14,8:18,8
+chrX	14223751	.	CA	C	0	PASS	DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:21,9:13,2:8,7
+chrX	14422840	.	A	G	0	PASS	DP=59;GPV=1;SPV=0.17135;SS=2;SSC=7;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:16,5:7,4:9,1
+chrX	14823079	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.010021;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,5:7,4:4,1
+chrX	14839432	.	G	T	0	PASS	DP=84;GPV=1;SPV=3.7594e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:21,15:12,7:9,8
+chrX	17059920	.	A	G	0	PASS	DP=78;GPV=1;SPV=0.019179;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:16,8:9,3
+chrX	17977306	.	CT	C	0	PASS	DP=52;GPV=1;SPV=0.00057277;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:18,11:11,8:7,3
+chrX	18844332	.	T	G	0	PASS	DP=75;GPV=1;SPV=0.062923;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:19,3:20,2
+chrX	19284527	.	T	C	0	PASS	DP=83;GPV=1;SPV=0.00012972;SS=2;SSC=38;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:54:36,18:22,9:14,9
+chrX	21339631	.	C	T	0	PASS	DP=100;GPV=1;SPV=1.4808e-06;SS=2;SSC=58;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:33,17:13,12:20,5
+chrX	21995667	.	T	TTTTC	0	PASS	DP=24;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:7,7:0,4:7,3
+chrX	22501795	.	G	A	0	PASS	DP=97;GPV=1;SPV=1.4647e-10;SS=2;SSC=98;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:22,25:8,13:14,12
+chrX	22898755	.	AT	A	0	PASS	DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:6,4:7,1
+chrX	22898764	.	A	ATTT	0	PASS	DP=38;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:13,6:7,4:6,2
+chrX	22983526	.	CTA	C	0	PASS	DP=84;GPV=1;SPV=0.01617;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:36,12:17,6:19,6
+chrX	23400309	.	C	T	0	PASS	DP=78;GPV=1;SPV=1.5419e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:11,9:16,7
+chrX	24709584	.	C	A	0	PASS	DP=82;GPV=1;SPV=0.045829;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:11,2:26,5
+chrX	25045430	.	C	CA	0	PASS	DP=56;GPV=1;SPV=0.037307;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:25,5:14,3:11,2
+chrX	25061948	.	CA	C	0	PASS	DP=39;GPV=1;SPV=0.022127;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:6,2:6,2
+chrX	27705060	.	T	G	0	PASS	DP=63;GPV=1;SPV=0.046007;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:26,4:11,3:15,1
+chrX	27756805	.	C	T	0	PASS	DP=70;GPV=1;SPV=1.9644e-05;SS=2;SSC=47;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:22,14:14,7:8,7
+chrX	27991343	.	G	A	0	PASS	DP=79;GPV=1;SPV=0.00029953;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:31,12:9,6:22,6
+chrX	28839659	.	G	T	0	PASS	DP=83;GPV=1;SPV=5.1149e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:26,21:15,12:11,9
+chrX	29142698	.	A	ATT	0	PASS	DP=93;GPV=1;SPV=0.00038469;SS=2;SSC=34;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:30,14:12,9:18,5
+chrX	30652124	.	GA	G	0	PASS	DP=47;GPV=1;SPV=0.010204;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:12,4:9,1:3,3
+chrX	30729345	.	C	G	0	PASS	DP=92;GPV=1;SPV=0.022084;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:39,5:20,2:19,3
+chrX	31816796	.	A	T	0	PASS	DP=34;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:9,3:4,2
+chrX	32885829	.	A	G	0	PASS	DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:25,4:14,3:11,1
+chrX	33009102	.	GTA	G	0	PASS	DP=25;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,5:1,4:7,1
+chrX	33060837	.	CA	C	0	PASS	DP=50;GPV=1;SPV=0.03159;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:17,9:11,8:6,1
+chrX	33432973	.	CAAAAAAAAAAAAAAA	C	0	PASS	DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:8,4:3,3:5,1
+chrX	34250198	.	G	A	0	PASS	DP=30;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:14:8,6:5,1:3,5
+chrX	34834603	.	AAT	A	0	PASS	DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,9:8,6:5,3
+chrX	35692244	.	ATT	A	0	PASS	DP=40;GPV=1;SPV=0.23279;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:22,3:5,1:17,2
+chrX	38811924	.	T	C	0	PASS	DP=79;GPV=1;SPV=5.287e-05;SS=2;SSC=42;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:26,12:13,6:13,6
+chrX	40631256	.	C	T	0	PASS	DP=56;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:3,2:1,1:2,1
+chrX	41181436	.	T	C	0	PASS	DP=32;GPV=1;SPV=0.0098934;SS=2;SSC=20;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:9,10:5,7:4,3
+chrX	41299167	.	C	CT	0	PASS	DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:20,4:11,1:9,3
+chrX	42419349	.	AT	A	0	PASS	DP=73;GPV=1;SPV=7.7636e-06;SS=2;SSC=51;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,14:9,11:12,3
+chrX	44602073	.	GTATGTATA	G	0	PASS	DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:22,4:14,3:8,1
+chrX	47353997	.	C	CTTTTCTTTTCT	0	PASS	DP=40;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:2,3:17,1
+chrX	47369156	.	CTT	C	0	PASS	DP=43;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:13,6:5,2:8,4
+chrX	48284148	.	T	G	0	PASS	DP=31;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:11,4:9,2:2,2
+chrX	48643108	.	CTA	C	0	PASS	DP=43;GPV=1;SPV=0.040656;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:11,4:4,2
+chrX	49344146	.	G	T	0	PASS	DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:27,4:27,4:0,0
+chrX	49885042	.	C	CT	0	PASS	DP=33;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:5,9:3,8:2,1
+chrX	51541752	.	T	C	0	PASS	DP=97;GPV=1;SPV=4.3002e-09;SS=2;SSC=83;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:25,22:14,10:11,12
+chrX	52799679	.	T	C	0	PASS	DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:7,10:1,2:6,8
+chrX	55389535	.	C	T	0	PASS	DP=85;GPV=1;SPV=9.7647e-07;SS=2;SSC=60;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:27,19:14,12:13,7
+chrX	55442043	.	T	A	0	PASS	DP=83;GPV=1;SPV=0.00037848;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:28,9:15,4:13,5
+chrX	58002624	.	T	A	0	PASS	DP=77;GPV=1;SPV=5.3456e-07;SS=2;SSC=62;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:20,16:9,7:11,9
+chrX	58271215	.	C	T	0	PASS	DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,6:2,1:5,5
+chrX	60450576	.	C	T	0	PASS	DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:15,4:0,0:15,4
+chrX	63780880	.	G	C	0	PASS	DP=70;GPV=1;SPV=0.031966;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:37,7:16,3:21,4
+chrX	65956050	.	T	C	0	PASS	DP=111;GPV=1;SPV=0.037547;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:59:48,11:22,9:26,2
+chrX	66569122	.	G	A	0	PASS	DP=79;GPV=1;SPV=3.1863e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:25,17:16,8:9,9
+chrX	67300206	.	A	G	0	PASS	DP=93;GPV=1;SPV=3.0955e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:30,21:14,7:16,14
+chrX	70619816	.	C	CT	0	PASS	DP=58;GPV=1;SPV=0.0094403;SS=2;SSC=20;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:22,10:15,8:7,2
+chrX	70647683	.	A	T	0	PASS	DP=93;GPV=1;SPV=4.4308e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:30,20:19,11:11,9
+chrX	70971461	.	G	A	0	PASS	DP=27;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:12,4:10,1:2,3
+chrX	71230854	.	A	T	0	PASS	DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:7,4:4,1:3,3
+chrX	72453464	.	T	TAAAG	0	PASS	DP=56;GPV=1;SPV=0.0069343;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:14,10:6,6:8,4
+chrX	72710825	.	A	AT	0	PASS	DP=94;GPV=1;SPV=0.033817;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:41,7:23,4:18,3
+chrX	73577343	.	T	A	0	PASS	DP=87;GPV=1;SPV=8.5797e-06;SS=2;SSC=50;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:31,17:16,10:15,7
+chrX	73842797	.	C	T	0	PASS	DP=76;GPV=1;SPV=2.68e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:20,18:9,8:11,10
+chrX	74960268	.	C	A	0	PASS	DP=71;GPV=1;SPV=0.00010649;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,17:15,10:13,7
+chrX	76209416	.	TATATATATCTAC	T	0	PASS	DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:11,7:5,5:6,2
+chrX	76549620	.	C	CT	0	PASS	DP=22;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:7,5:3,2:4,3
+chrX	77073861	.	G	T	0	PASS	DP=76;GPV=1;SPV=7.0297e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:15,4:5,5
+chrX	78548854	.	C	T	0	PASS	DP=71;GPV=1;SPV=0.0017066;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:26,8:13,5:13,3
+chrX	79841717	.	C	A	0	PASS	DP=76;GPV=1;SPV=0.00066603;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:29,10:18,3:11,7
+chrX	79915565	.	CATATATATAT	C	0	PASS	DP=21;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,5:1,4:5,1
+chrX	80000132	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.00058486;SS=2;SSC=32;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:12,11:3,5:9,6
+chrX	80753589	.	A	T	0	PASS	DP=81;GPV=1;SPV=0.033295;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:44,7:21,4:23,3
+chrX	80845891	.	C	T	0	PASS	DP=114;GPV=1;SPV=3.1065e-10;SS=2;SSC=95;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:55:30,25:15,16:15,9
+chrX	81067614	.	A	T	0	PASS	DP=59;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:26:1,3:0,1:1,2
+chrX	83187133	.	T	C	0	PASS	DP=66;GPV=1;SPV=3.1572e-09;SS=2;SSC=85;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:11,19:7,2:4,17
+chrX	83517110	.	T	C	0	PASS	DP=77;GPV=1;SPV=0.00058357;SS=2;SSC=32;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:27,9:12,5:15,4
+chrX	84659249	.	G	A	0	PASS	DP=80;GPV=1;SPV=4.5319e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:25,23:8,7:17,16
+chrX	86689156	.	A	C	0	PASS	DP=74;GPV=1;SPV=3.218e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:20,19:9,5:11,14
+chrX	87233876	.	T	TAC	0	PASS	DP=51;GPV=1;SPV=0.059999;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:25,6:12,2:13,4
+chrX	87234360	.	TACATATATATTATATATAC	T	0	PASS	DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:10:5,5:1,2:4,3
+chrX	87379839	.	T	A	0	PASS	DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:35,4:21,2:14,2
+chrX	88703648	.	GA	G	0	PASS	DP=42;GPV=1;SPV=0.010344;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:15,6:12,5:3,1
+chrX	88880465	.	G	A	0	PASS	DP=83;GPV=1;SPV=3.3311e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:28,13:14,5:14,8
+chrX	89836645	.	C	G	0	PASS	DP=58;GPV=1;SPV=0.014208;SS=2;SSC=18;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:26,7:14,2:12,5
+chrX	89895899	.	A	C	0	PASS	DP=33;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:13,5:4,3:9,2
+chrX	90257641	.	G	T	0	PASS	DP=63;GPV=1;SPV=0.040635;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:34,7:20,4:14,3
+chrX	90269467	.	T	TTATA	0	PASS	DP=45;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:20,4:7,2:13,2
+chrX	90901597	.	C	A	0	PASS	DP=66;GPV=1;SPV=0.0044132;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:33,14:19,8:14,6
+chrX	91065127	.	G	T	0	PASS	DP=43;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:18,6:12,5:6,1
+chrX	91224128	.	A	AAATAATAAT	0	PASS	DP=59;GPV=1;SPV=0.04524;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:36:25,11:13,5:12,6
+chrX	91251493	.	T	C	0	PASS	DP=66;GPV=1;SPV=0.016812;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:10,4:13,5
+chrX	91828120	.	CT	C	0	PASS	DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:18,10:13,9:5,1
+chrX	91896087	.	G	T	0	PASS	DP=67;GPV=1;SPV=0.00023423;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:29:20,9:10,4:10,5
+chrX	91953315	.	C	A	0	PASS	DP=100;GPV=1;SPV=2.1224e-05;SS=2;SSC=46;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:36,14:19,7:17,7
+chrX	92078122	.	T	TA	0	PASS	DP=67;GPV=1;SPV=2.7081e-05;SS=2;SSC=45;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:22,15:13,8:9,7
+chrX	92566592	.	C	G	0	PASS	DP=58;GPV=1;SPV=0.0049255;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:25,9:9,8:16,1
+chrX	92576041	.	T	A	0	PASS	DP=45;GPV=1;SPV=0.00011056;SS=2;SSC=39;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:5,7:6,3
+chrX	92743454	.	GA	G	0	PASS	DP=69;GPV=1;SPV=0.007358;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:39:31,8:19,6:12,2
+chrX	93419812	.	C	T	0	PASS	DP=78;GPV=1;SPV=3.4423e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:13,6:14,8
+chrX	94795827	.	AT	A	0	PASS	DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:12,3:5,2
+chrX	96067419	.	A	C	0	PASS	DP=84;GPV=1;SPV=0.00021276;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:35,14:17,9:18,5
+chrX	96434670	.	G	A	0	PASS	DP=85;GPV=1;SPV=2.5666e-07;SS=2;SSC=65;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:27,24:12,8:15,16
+chrX	96837435	.	G	C	0	PASS	DP=50;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:12,8:5,3:7,5
+chrX	98001253	.	C	A	0	PASS	DP=92;GPV=1;SPV=4.7997e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:28,18:15,9:13,9
+chrX	98325244	.	G	A	0	PASS	DP=94;GPV=1;SPV=7.2254e-08;SS=2;SSC=71;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:27,20:16,10:11,10
+chrX	98827187	.	A	T	0	PASS	DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:16,11:11,6:5,5
+chrX	99552903	.	A	AATATAT	0	PASS	DP=24;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:12:7,5:5,1:2,4
+chrX	99869226	.	A	T	0	PASS	DP=83;GPV=1;SPV=1.3324e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:27,14:13,6:14,8
+chrX	101792604	.	CGTGT	C	0	PASS	DP=54;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:14,5:5,3:9,2
+chrX	106200872	.	C	T	0	PASS	DP=77;GPV=1;SPV=6.5488e-05;SS=2;SSC=41;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:13,10:14,3
+chrX	106510355	.	T	C	0	PASS	DP=89;GPV=1;SPV=5.459e-10;SS=2;SSC=92;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:20,24:12,10:8,14
+chrX	107557797	.	CTATATA	C	0	PASS	DP=27;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,6:1,4:3,2
+chrX	107754072	.	C	T	0	PASS	DP=75;GPV=1;SPV=5.967e-06;SS=2;SSC=52;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:47:26,21:9,13:17,8
+chrX	108343134	.	AAT	A	0	PASS	DP=46;GPV=1;SPV=0.022121;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:19,3:2,4
+chrX	108874131	.	G	A	0	PASS	DP=74;GPV=1;SPV=4.5693e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:21,20:10,9:11,11
+chrX	109753999	.	C	CAAA	0	PASS	DP=54;GPV=1;SPV=0.023496;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,10:17,9:5,1
+chrX	109882816	.	C	CTT	0	PASS	DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:16,5:8,4:8,1
+chrX	110084379	.	T	A	0	PASS	DP=24;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:6,3:3,2:3,1
+chrX	110689604	.	A	C	0	PASS	DP=37;GPV=1;SPV=0.020719;SS=2;SSC=16;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:8,6:4,4:4,2
+chrX	110689606	.	C	A	0	PASS	DP=32;GPV=1;SPV=0.063462;SS=2;SSC=11;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:8,3:5,2:3,1
+chrX	113097201	.	C	CTTTT	0	PASS	DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:18,4:9,3:9,1
+chrX	113206719	.	G	T	0	PASS	DP=85;GPV=1;SPV=3.3703e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:9,10:18,6
+chrX	113671430	.	CAAAA	C	0	PASS	DP=32;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:18:10,8:8,4:2,4
+chrX	115458659	.	CAAGCAAGAAAGAAAGAAAGAAAGAAAGA	C	0	PASS	DP=52;GPV=1;SPV=0.041892;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:21,7:10,5:11,2
+chrX	115888354	.	G	A	0	PASS	DP=324;GPV=1;SPV=0.048847;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:168:150,18:79,5:71,13
+chrX	116895479	.	TC	T	0	PASS	DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:28,4:18,1:10,3
+chrX	117369732	.	A	T	0	PASS	DP=82;GPV=1;SPV=3.46e-05;SS=2;SSC=44;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:30,15:18,7:12,8
+chrX	118231918	.	AAAGAAGAAG	A	0	PASS	DP=24;GPV=1;SPV=0.026224;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:13:4,6:0,5:4,1
+chrX	118323949	.	A	C	0	PASS	DP=37;GPV=1;SPV=0.057503;SS=2;SSC=12;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:19,8:12,7:7,1
+chrX	118438797	.	G	GTTTTTTTTT	0	PASS	DP=38;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:24:19,4:11,3:8,1
+chrX	119156971	.	CTATATATATATATA	C	0	PASS	DP=23;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:8,4:3,3:5,1
+chrX	120068061	.	AC	A	0	PASS	DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:23,4:13,2:10,2
+chrX	121458402	.	G	A	0	PASS	DP=80;GPV=1;SPV=1.8347e-06;SS=2;SSC=57;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:27,22:12,13:15,9
+chrX	122945234	.	TC	T	0	PASS	DP=42;GPV=1;SPV=0.011012;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:8,7:4,3:4,4
+chrX	123288134	.	T	C	0	PASS	DP=86;GPV=1;SPV=0.010112;SS=2;SSC=19;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:33,8:15,6:18,2
+chrX	123849603	.	C	CA	0	PASS	DP=45;GPV=1;SPV=0.0041602;SS=2;SSC=23;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:10,8:5,7:5,1
+chrX	123864455	.	G	GT	0	PASS	DP=27;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:11,5:7,3:4,2
+chrX	123926466	.	C	CTT	0	PASS	DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:15:10,4:6,3:4,1
+chrX	124436936	.	CTT	C	0	PASS	DP=44;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:14,8:9,4:5,4
+chrX	125516959	.	A	T	0	PASS	DP=78;GPV=1;SPV=1.5419e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:27,16:14,5:13,11
+chrX	126154797	.	C	T	0	PASS	DP=85;GPV=1;SPV=3.454e-06;SS=2;SSC=54;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:28,17:14,10:14,7
+chrX	126758503	.	G	C	0	PASS	DP=79;GPV=1;SPV=3.2088e-10;SS=2;SSC=94;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:16,26:7,10:9,16
+chrX	126765903	.	C	T	0	PASS	DP=85;GPV=1;SPV=0.00034023;SS=2;SSC=34;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:51:37,14:21,6:16,8
+chrX	127180258	.	C	A	0	PASS	DP=69;GPV=1;SPV=0.032967;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:40:1,10:0,2:1,8
+chrX	127905933	.	T	TATATATATATATATATATATATATAG	0	PASS	DP=43;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:9,4:5,3:4,1
+chrX	129053010	.	C	T	0	PASS	DP=77;GPV=1;SPV=0.0007826;SS=2;SSC=31;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:33,12:13,9:20,3
+chrX	129469054	.	G	A	0	PASS	DP=77;GPV=1;SPV=0.00019866;SS=2;SSC=37;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:31,14:14,3:17,11
+chrX	129599286	.	C	CT	0	PASS	DP=53;GPV=1;SPV=0.0029501;SS=2;SSC=25;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,8:11,4:8,4
+chrX	130087798	.	G	A	0	PASS	DP=73;GPV=1;SPV=0.00029546;SS=2;SSC=35;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:25,10:9,3:16,7
+chrX	130335457	.	C	CA	0	PASS	DP=40;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:20:15,4:12,3:3,1
+chrX	130489927	.	A	C	0	PASS	DP=72;GPV=1;SPV=0.046841;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:34,8:15,5:19,3
+chrX	130786650	.	G	A	0	PASS	DP=54;GPV=1;SPV=0.0056253;SS=2;SSC=22;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:30:22,8:10,3:12,5
+chrX	130864313	.	C	T	0	PASS	DP=82;GPV=1;SPV=1.0798e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:29,17:9,8:20,9
+chrX	131117619	.	A	ATT	0	PASS	DP=40;GPV=1;SPV=0.013095;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:17:8,5:8,4:0,1
+chrX	132138750	.	T	TAATA	0	PASS	DP=66;GPV=1;SPV=0.0075277;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:21,13:12,9:9,4
+chrX	133148474	.	G	A	0	PASS	DP=99;GPV=1;SPV=1.5518e-08;SS=2;SSC=78;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:50:28,22:12,7:16,15
+chrX	134950870	.	C	CT	0	PASS	DP=42;GPV=1;SPV=0.0073947;SS=2;SSC=21;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:21:11,10:8,5:3,5
+chrX	137105225	.	G	T	0	PASS	DP=82;GPV=1;SPV=2.6974e-05;SS=2;SSC=45;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:27,13:12,5:15,8
+chrX	137492843	.	CT	C	0	PASS	DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:23:19,4:14,3:5,1
+chrX	137523728	.	C	T	0	PASS	DP=85;GPV=1;SPV=2.5625e-10;SS=2;SSC=95;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:17,23:10,13:7,10
+chrX	139523037	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.00025079;SS=2;SSC=36;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:28:19,9:12,4:7,5
+chrX	141098121	.	GTGTATATATATATATATA	G	0	PASS	DP=56;GPV=1;SPV=0.024419;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:31:17,10:12,5:5,5
+chrX	142287597	.	T	C	0	PASS	DP=71;GPV=1;SPV=1.9669e-07;SS=2;SSC=67;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:41:19,22:12,9:7,13
+chrX	142551074	.	A	ATATG	0	PASS	DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:25:20,5:11,3:9,2
+chrX	143600240	.	C	CA	0	PASS	DP=79;GPV=1;SPV=0.00047367;SS=2;SSC=33;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:42:31,11:13,5:18,6
+chrX	143631629	.	A	T	0	PASS	DP=61;GPV=1;SPV=8.729e-05;SS=2;SSC=40;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:20,13:9,7:11,6
+chrX	144171912	.	A	G	0	PASS	DP=45;GPV=1;SPV=0.036342;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:10,2:11,4
+chrX	144847540	.	C	T	0	PASS	DP=79;GPV=1;SPV=0.0043057;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:36,9:18,5:18,4
+chrX	144848827	.	C	A	0	PASS	DP=74;GPV=1;SPV=1.3393e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:37:23,14:11,7:12,7
+chrX	144878667	.	C	CT	0	PASS	DP=68;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:38:6,16:1,12:5,4
+chrX	145173170	.	AAG	A	0	PASS	DP=46;GPV=1;SPV=0.047988;SS=2;SSC=13;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:26:21,5:10,3:11,2
+chrX	145612584	.	C	T	0	PASS	DP=93;GPV=1;SPV=0.0017437;SS=2;SSC=27;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:48:39,9:20,3:19,6
+chrX	145938390	.	A	ATGTGTG	0	PASS	DP=53;GPV=1;SPV=0.015839;SS=2;SSC=18;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:33:22,11:16,8:6,3
+chrX	146835816	.	A	G	0	PASS	DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,4:13,2:4,2
+chrX	146972101	.	G	C	0	PASS	DP=87;GPV=1;SPV=0.03614;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:52:43,9:26,1:17,8
+chrX	147512886	.	TTACACATTGTAATACACATTGCAATACAA	T	0	PASS	DP=78;GPV=1;SPV=0.036707;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:35:31,4:15,2:16,2
+chrX	147982851	.	G	A	0	PASS	DP=78;GPV=1;SPV=0.00049033;SS=2;SSC=33;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:40:25,15:13,6:12,9
+chrX	148430035	.	TATATAATATATAAATATATTATATATTATATAA	T	0	PASS	DP=34;GPV=1;SPV=0.094639;SS=2;SSC=10;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:22:17,5:6,4:11,1
+chrX	150398367	.	G	A	0	PASS	DP=46;GPV=1;SPV=0.031602;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:27:21,6:13,5:8,1
+chrX	151073038	.	ATATG	A	0	PASS	DP=38;GPV=1;SPV=0.021584;SS=2;SSC=16;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:16:10,4:6,3:4,1
+chrX	151781807	.	C	T	0	PASS	DP=82;GPV=1;SPV=1.5203e-05;SS=2;SSC=48;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:43:28,15:14,9:14,6
+chrX	152074475	.	A	T	0	PASS	DP=82;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	1/1:.:35:0,2:0,0:0,2
+chrX	152127579	.	C	T	0	PASS	DP=80;GPV=1;SPV=4.9813e-07;SS=2;SSC=63;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:44:24,20:14,8:10,12
+chrX	152296703	.	C	CT	0	PASS	DP=55;GPV=1;SPV=0.018989;SS=2;SSC=17;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:21,13:13,10:8,3
+chrX	152808054	.	T	G	0	PASS	DP=92;GPV=1;SPV=3.3869e-07;SS=2;SSC=64;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:49:29,20:18,10:11,10
+chrX	153012235	.	G	A	0	PASS	DP=64;GPV=1;SPV=0.0010185;SS=2;SSC=29;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:32:23,9:14,5:9,4
+chrX	153091352	.	T	C	0	PASS	DP=83;GPV=1;SPV=1.2506e-05;SS=2;SSC=49;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:45:29,16:18,9:11,7
+chrX	153569113	.	G	A	0	PASS	DP=83;GPV=1;SPV=6.8562e-07;SS=2;SSC=61;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:46:26,20:11,10:15,10
+chrX	153619138	.	CT	C	0	PASS	DP=40;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:19:10,6:7,1:3,5
+chrX	154191398	.	G	T	0	PASS	DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:11:6,5:5,2:1,3
+chrY	11137800	.	CA	C	0	PASS	DP=288;GPV=1;SPV=0.011245;SS=2;SSC=19;INDEL;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:156:136,20:67,12:69,8
+chrY	11147115	.	A	G	0	PASS	DP=195;GPV=1;SPV=0.049806;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:88:75,13:30,9:45,4
+chrY	11177613	.	G	A	0	PASS	DP=155;GPV=1;SPV=0.017287;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:73:61,12:44,8:17,4
+chrY	11198115	.	A	T	0	PASS	DP=207;GPV=1;SPV=0.035283;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:109:41,12:14,4:27,8
+chrY	11199942	.	T	A	0	PASS	DP=203;GPV=1;SPV=0.036234;SS=2;SSC=14;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:100:83,17:70,12:13,5
+chrY	11236902	.	T	G	0	PASS	DP=147;GPV=1;SPV=0.019653;SS=2;SSC=17;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:74:61,13:36,7:25,6
+chrY	11403141	.	A	T	0	PASS	DP=68;GPV=1;SPV=0.0272;SS=2;SSC=15;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:34:27,7:12,3:15,4
+chrY	11479240	.	G	A	0	PASS	DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:8:5,3:1,2:4,1
+chrY	56827498	.	A	G	0	PASS	DP=301;GPV=1;SPV=0.0040244;SS=2;SSC=23;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:154:132,22:54,7:78,15
+chrY	56864133	.	A	G	0	PASS	DP=616;GPV=1;SPV=0.0023512;SS=2;SSC=26;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:342:293,49:163,26:130,23
+chrY	56881916	.	T	C	0	PASS	DP=172;GPV=1;SPV=0.043553;SS=2;SSC=13;SOMATIC	GT:GQ:DP:AD:ADF:ADR	0/1:.:92:81,11:35,6:46,5
diff -r 000000000000 -r 924c527fb379 test-data/levels.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/levels.tab	Sun Sep 13 18:40:29 2020 +0000
@@ -0,0 +1,3 @@
+EGF037F.vcf	AAA
+EGF089.vcf	BBB
+EGF167.vcf	CCC
diff -r 000000000000 -r 924c527fb379 test-data/output.pdf
Binary file test-data/output.pdf has changed