# HG changeset patch
# User artbio
# Date 1657647849 0
# Node ID af5c65ad53176d868652cd1c3ffaf2806ae4f46e
# Parent  b00fef2b1c2cc868b7aa5361691c3c03b90e535c
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit bc7fab3050541155f0c3e15b7f448a1802155670

diff -r b00fef2b1c2c -r af5c65ad5317 mutational_patterns.R
--- a/mutational_patterns.R	Wed Jul 06 11:43:09 2022 +0000
+++ b/mutational_patterns.R	Tue Jul 12 17:44:09 2022 +0000
@@ -489,7 +489,9 @@
                       # xlim(rev(levels(factor(cos_sim_ori_rec$sample)))) +
                       theme_bw() +
                       theme(panel.grid.minor.y = element_blank(),
-                      panel.grid.major.y = element_blank()) +
+                            panel.grid.major.y = element_blank(),
+                            axis.text.x = element_text(angle = 90, vjust = 0.5, hjust = 1)
+                            ) +
                       # Add cut.off line
                       geom_hline(aes(yintercept = .95))
     grid.arrange(p9, top = textGrob("Similarity between true profiles and profiles reconstructed with elementary signatures", gp = gpar(fontsize = 12, font = 3)))
diff -r b00fef2b1c2c -r af5c65ad5317 mutational_patterns.xml
--- a/mutational_patterns.xml	Wed Jul 06 11:43:09 2022 +0000
+++ b/mutational_patterns.xml	Tue Jul 12 17:44:09 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy1">
+<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy2">
     <description>from genomic variations in vcf files</description>
     <requirements>
         <requirement type="package" version="3.4.0=r41hdfd78af_0">bioconductor-mutationalpatterns</requirement>
diff -r b00fef2b1c2c -r af5c65ad5317 test-data/cosmic_output1.pdf
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diff -r b00fef2b1c2c -r af5c65ad5317 test-data/cosmic_output_v3.pdf
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diff -r b00fef2b1c2c -r af5c65ad5317 test-data/denovo_1.RData
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diff -r b00fef2b1c2c -r af5c65ad5317 test-data/denovo_output1.pdf
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diff -r b00fef2b1c2c -r af5c65ad5317 test-data/spectrum_output1.pdf
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diff -r b00fef2b1c2c -r af5c65ad5317 test-data/user_output.pdf
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