Mercurial > repos > artbio > mutational_patterns
changeset 27:2c9759c7ba72 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mutational_patterns commit b9ce1f9ddb27b70eea962c69d8f6fe792bb062eb
| author | artbio |
|---|---|
| date | Sat, 10 Feb 2024 17:45:11 +0000 |
| parents | af5c65ad5317 |
| children | 9a33a5a90a2c |
| files | mutational_patterns.xml |
| diffstat | 1 files changed, 14 insertions(+), 10 deletions(-) [+] |
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--- a/mutational_patterns.xml Tue Jul 12 17:44:09 2022 +0000 +++ b/mutational_patterns.xml Sat Feb 10 17:45:11 2024 +0000 @@ -1,15 +1,19 @@ -<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy2"> +<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>from genomic variations in vcf files</description> + <macros> + <token name="@TOOL_VERSION@">3.12.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">23.0</token> + </macros> <requirements> - <requirement type="package" version="3.4.0=r41hdfd78af_0">bioconductor-mutationalpatterns</requirement> - <!--requirement type="package" version="1.1.1l=h7f98852_0">openssl</requirement> --> - <requirement type="package" version="3.3.6=r41hc72bb7e_0">r-ggplot2</requirement> - <requirement type="package" version="1.7.1=r41hc72bb7e_0">r-optparse</requirement> - <requirement type="package" version="0.2.21=r41h7525677_1">r-rjson</requirement> - <requirement type="package" version="0.21.0=r41h03ef668_1004">r-nmf</requirement> - <requirement type="package" version="2.3=r41hc72bb7e_1003">r-gridextra</requirement> - <requirement type="package" version="1.4.3=r41hdfd78af_4">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> - <requirement type="package" version="1.4.4=r41hdfd78af_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement> + <requirement type="package" version="@TOOL_VERSION@">bioconductor-mutationalpatterns</requirement> + <requirement type="package" version="3.4.4">r-ggplot2</requirement> + <requirement type="package" version="1.7.4">r-optparse</requirement> + <requirement type="package" version="0.2.21">r-rjson</requirement> + <requirement type="package" version="0.21.0">r-nmf</requirement> + <requirement type="package" version="2.3">r-gridextra</requirement> + <requirement type="package" version="1.4.3">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> + <requirement type="package" version="1.4.5">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement> <!-- install more bioconda genomes bioconductor-bsgenome.mmusculus.ucsc.mm9