Mercurial > repos > artbio > mutational_patterns
changeset 5:fe31d059a482 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 8726066cfb70109de05cbdb7aa7c08ee11b957e9"
| author | artbio |
|---|---|
| date | Tue, 06 Oct 2020 13:33:44 +0000 |
| parents | 7ba08c826888 |
| children | 2c1d58f5c296 |
| files | mutational_patterns.R mutational_patterns.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/mutational_patterns.R Mon Oct 05 19:29:42 2020 +0000 +++ b/mutational_patterns.R Tue Oct 06 13:33:44 2020 +0000 @@ -102,7 +102,7 @@ vcf_paths <- attr(fileslist, "names") element_identifiers <- unname(unlist(fileslist)) ref_genome <- opt$genome -vcf_table <- data.frame(element_identifier=element_identifiers, path=vcf_paths) +vcf_table <- data.frame(element_identifier=as.character(element_identifiers), path=vcf_paths) library(MutationalPatterns) library(ref_genome, character.only = TRUE)
--- a/mutational_patterns.xml Mon Oct 05 19:29:42 2020 +0000 +++ b/mutational_patterns.xml Tue Oct 06 13:33:44 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy5"> +<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy6"> <description>from genomic variations in vcf files</description> <requirements> <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement>