Mercurial > repos > artbio > oases
comparison oases_optimiser.xml @ 1:c9b5ec6c45e8 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/oases commit 173900d7d8c5deca11e125ee0b5ae1a7bd5147f0"
| author | artbio |
|---|---|
| date | Sun, 07 Mar 2021 22:44:05 +0000 |
| parents | f7dd852c8f4c |
| children | ab37eb09b4ca |
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| 0:f7dd852c8f4c | 1:c9b5ec6c45e8 |
|---|---|
| 1 <tool id="oasesoptimiserv" name="Oases_optimiser" version="1.2.2"> | 1 <tool id="oasesoptimiserv" name="Oases_optimiser" version="1.3.0"> |
| 2 <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description> | 2 <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.2.09">oases</requirement> | 4 <requirement type="package" version="0.2.09">oases</requirement> |
| 5 <requirement type="package" version="1.2.10">velvet</requirement> | 5 <requirement type="package" version="1.2.10">velvet</requirement> |
| 6 <requirement type="package" version="3.7.6">python</requirement> | |
| 6 </requirements> | 7 </requirements> |
| 7 <command><![CDATA[ | 8 <command><![CDATA[ |
| 8 python "$__tool_directory__"/oases_optimiser.py "$start_hash_length" "$end_hash_length" | 9 python "$__tool_directory__"/oases_optimiser.py "$start_hash_length" "$end_hash_length" |
| 9 #for $i in $inputs | 10 #for $i in $inputs |
| 10 "${i.input}" | 11 "${i.input}" |