diff README @ 0:f7dd852c8f4c draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/oases commit 48b8101fd53263212839ecb14d3029811a3278f4

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+# 15/04/2017
+The tool now uses bioconda dependencies
+        <requirement type="package" version="0.2.09">oases</requirement>
+        <requirement type="package" version="1.2.10">velvet</requirement>
+As the output is not deterministic, test search for line matching oases locus ranging in 1-25
+
+#Created 28/11/2014
+#Christophe Antoniewski, CNRS/University Pierre et Marie Curie, [e-mail]
+# inspired from the oases wrapper developped by Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter 
+
+Oases optimiser
+
+This Galaxy tool is intended to provide a crude but effective method of producing semi-optimised transcriptome assemblies.
+It operates by performing a number of user defined Velvet assemblies upon which Oases is then run.
+The results of all of these runs are then put through a final Oases step where they act as scaffolds for the main assembly.
+Note that this wrapper is designed to focused on small RNA reads from small RNA sequencings and will run velvetg with kmers ranging from 11 to 35 
+Prerequisites:
+
+1. Enclosed scripts
+2. package_ged_velvet and package_ged_oases dependency packages
+
+Limitations:
+
+This is a crude optimisation step which DOES NOT try to evaluate the quality of each assembly or map to any reference cDNA.