view multi_to_single_fast5.xml @ 0:0fbeff566070 draft default tip

"planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/ont_fast5_api commit 9fb27995131a4106053eb85d687857d2cbd2a5c6"

<?xml version="1.0"?>
<tool id="ont_fast5_api_multi_to_single_fast5" name="@TOOL_NAME@ Multi to single" version="@TOOL_VERSION@+galaxy0" profile="18.01">
    <description>read file(s)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command><![CDATA[multi_to_single_fast5 -v]]></version_command>
    <command detect_errors="exit_code"><![CDATA[
## initialize
@INITIALIZE@

## run
multi_to_single_fast5
--recursive
## required
@INPUTPATH@
@SAVEPATH@
## optional
@THREADS@

## create tarball
@TARBALL@
    ]]></command>
    <inputs>
        <expand macro="input"/>
    </inputs>
    <outputs>
        <expand macro="output"/>
    </outputs>
    <tests>
        <!-- #1 default -->
        <test expect_num_outputs="2">
            <param name="input_path" value="multi.fast5.tar"/>
            <output name="out_results">
                <assert_contents>
                    <has_size value="71680"/>
                </assert_contents>
            </output>
            <output name="summary" format="txt" value="filename_mapping_8.txt" />
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

**What it does**

@WID@

*multi_to_single_fast5* converts multi read FAST5 file(s) into single read FAST5 files.

**Input**

Multi read file(s) in FAST5 format that are stored in a flat TAR.

**Output**

Single read FAST5 files that are stored in a flat TAR.

.. class:: infomark

**References**

@REFERENCES@
    ]]></help>
    <expand macro="citations"/>
</tool>