Mercurial > repos > artbio > pindel
annotate test-data/X_100000_Hum1.bam_Inversions.txt @ 0:decc6b5631dc draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
| author | artbio |
|---|---|
| date | Wed, 29 Sep 2021 21:30:31 +0000 |
| parents | |
| children | 078c6ab38858 |
| rev | line source |
|---|---|
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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1 #################################################################################################### |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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2 0 INV 63 NT 0:0 "":"" ChrID X BP 67129 67193 BP_range 67129 67193 Supports 2 1 + 2 1 - 0 0 S1 3 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 29 32 2 1 0 0 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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3 CACACTAAAGCAGCTACACACACTTACACCGACGCTTCTCAAGAAGAGAATATATTCACCTCAGCGACATGCACTAACGCAGCTGCACCCACTCATACGGATGCAGAACTTAAAAGCGCCAAAACgagctgaggttaatgctgccatcactgtgtgagagggaggggaagatttccaaagcttcgctcgttttggcgcttttaagttctgcatccgtatgagtgggtgcagctgcgttagtgcatgtcgc |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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4 ATATTCACCTCAGCGACATGCACTAACGCAGCTGCACCCACTCATACAGATGCAGAACTTAAAGGCGCCAAAACGAGCTAAGCTT + 67055 0 X_100000_Hum1.bam @HWI-42297995/2 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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5 ATATTCACCTCAGCGACATGCACTAACGCAGCTGCACCCACTCATACAGATGCAGAACTTAAAGGCGCCAAAACGAGCTAAGCTT + 67055 0 X_100000_Hum1.bam @HWI-42297995/2 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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6 ---------------------------------------------------------------------------------------------------- |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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7 tgtttgtgttagtgtgtgcatgagaaagaggggaaatagtattgcgtccaattttggtggaagagctgaggttaatgctgccatcactgtgtgagagggaggggaagatttccaaagcttcgctcTTCCACCAAAATTGGACGCAATACTATTTCCCCTCTTTCTCATGCACACACTAACACAAACAAGGCCACAAACTCAAGCACAGAAAGGCGCTCAAAATGTCCCGCGCTTATTATTACAGACGCAA |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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8 #################################################################################################### |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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9 1 INV 87 NT 16:0 "GCTTTTTTTTGCTGGT":"" ChrID X BP 5407 5495 BP_range 5407 5495 Supports 4 1 + 4 1 - 0 0 S1 5 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 0 1 4 1 0 0 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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10 CCAGCCAGAATGCCAAAATTACTCACCTGCAATGTTTCCTGAGGCCTCCAGCGACTCGGTGCTTCCGTCCTTCCGACGGGGGTACCTGAAAAGAATAAATCAATAACAATGTTAGTTTTAAATTT ttttgacagtaattaggacaggtaacattatcatattgtatggtatgtttacaatttacaattgaaatgattttatagaaaacattgaaatttaaaactaacattgttattgatttattcttttc |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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11 AGTTTTAAATTTCAATGTTTTCTATAAAATCATTTCAATTGTAAATTGTAAACATACCATACAATATGATAATGTTACCTGTCCTAATTACTGTCAAAAACCAGCAAAAAAAAGCAAAGTTAAAA + 5395 0 X_100000_Hum1.bam @HWI-35741779/1 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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12 AGTTTTAAATTTCAATGTTTTCTATAAAATCATTTCAATTGTAAATTGTAAACATACCATACAATATGATAATGTTACCTGTCCTAATTACTGTCAAAAACCAGCAAAAAAAAGCAAAGTTAAAA + 5395 0 X_100000_Hum1.bam @HWI-40771345/2 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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13 AGTTTTAAATTTCAATGTTTTCTATAAAATCATTTCAATTGTAAATTGTAAACATACCATACAATATGATAATGTTACCTGTCCTAATTACTGTCAAAAACCAGCAAAAAAAAGCAAAGTTAAAA + 5395 0 X_100000_Hum1.bam @HWI-40771345/2 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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14 AGTTTTAAATTTCAATGTTTTCTATAAAATCATTTCAATTGTAAATTGTAAACATACCATACAATATGATAATGTTACCTGTCCTAATTACTGTCAAAAACCAGCAAAAAAAAGCAAAGTTAAAA + 5395 0 X_100000_Hum1.bam @HWI-35741779/1 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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15 ---------------------------------------------------------------------------------------------------- |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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16 aataatgtaaaagtagttagtattttgtagacttaggcttttgacagtaattaggacaggtaacattatcatattgtatggtatgtttacaatttacaattgaaatgattttatagaaaacattgGCCTAAGTCTACAAAATACTAACTACTTTTACATTATTACTAACTATGTCCAACCCCCAAACTCACCACATGTAATGTTACATTCAAAAATGCAAATTATTGTACCTATATATTACAAACTCTGT |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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17 #################################################################################################### |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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18 2 INV 98 NT 7:0 "CCTATAT":"" ChrID X BP 39131 39230 BP_range 39131 39230 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 1 2 1 1 0 0 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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19 GGAGGATGGGCATCGGTTTTATCCATCTCATCGGACGATGGTAACTGCTCATCCTCGCCGCCATCAGCTATAGTCTCATCGCTGGATACCACGCCAACGTCAAATGAAACCACCATAGTAAGAAG caaataaagggtctggcaatatggtatttttattttcatttaatacaatattttcaaaatcgtaagatttcatgtcggcatttgtttgatataggcttcttcttactatggtggtttcatttgac |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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20 TTATCCATCTCATCGGACGATGGTAACTGCTCATCCTCGCCGCCATCAGCTATAGTCTCATCGCTGGATACCACGCCAACGTCAAATGAAACCACCATAGTAAGAAGCCTATATCAAACAAATGG + 39024 0 X_100000_Hum1.bam @HWI-19317189/2 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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21 ---------------------------------------------------------------------------------------------------- |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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22 tattagcagtactcccgcatttatcaacaaataaagggtctggcaatatggtatttttattttcatttaatacaatattttcaaaatcgtaagatttcatgtcggcatttgtttgatataggcttTTGATAAATGCGGGAGTACTGCTAATACCACAGAAGCCAATGAAAAACAGCCTGCCGATAGCCCCTTCCCCATTTCCATAAGCAAAAATTTTAGCACTTCCTCGCCACTAACACATGTAGACACG |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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23 #################################################################################################### |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
changeset
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24 3 INV 95 NT 39:0 "ACTAAGGTTAGTTAAAGGAGAAAAAGGAGCTAAACCGAA":"" ChrID X BP 73286 73382 BP_range 73286 73382 Supports 2 1 + 2 1 - 0 0 S1 3 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 28 49 2 1 0 0 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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25 TCAATAACATAAAATCCGCAGCCAATGAAGCCACCCCACCTAATCGCCCCCAAAATAACCGCACCTACAATTCTTCAAGAAGATCCACAAACCTAAGGCTAGATGAAGCAACTAAAAGGTTACTT tctttagacagtctattttgcacgttcttaaaccatcttcgggcttcgtcagttcctactgctctaaagattcgatttagctcctttttctcctcaagtaaccttttagttgcttcatctagcct |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff
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26 CCCCAAAATAACCGCACCTACAATTCTTCAAGAAGATCCACAAACCTAAGGCTAGATGAAGCAACTTAAAGGTTACTTACTAAGGTTAGTTAAAGGAGAAAAAGGAGCTAAACCGAATCTTTAGA + 73208 0 X_100000_Hum1.bam @HWI-2406974/1 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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27 CCCCAAAATAACCGCACCTACAATTCTTCAAGAAGATCCACAAACCTAAGGCTAGATGAAGCAACTTAAAGGTTACTTACTAAGGTTAGTTAAAGGAGAAAAAGGAGCTAAACCGAATCTTTAGA + 73208 0 X_100000_Hum1.bam @HWI-2406974/1 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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28 ---------------------------------------------------------------------------------------------------- |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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29 ttgagtagtttttgtttgagctttctgatttctttagacagtctattttgcacgttcttaaaccatcttcgggcttcgtcagttcctactgctctaaagattcgatttagctcctttttctcctcAATCAGAAAGCTCAAACAAAAACTACTCAACCGCAACCTACAAGATATTGACACTACGGACCGATATAGAATGCAAAAACTATGGAAAACCACAAATACAATTAAAATGCAACCTCGACCCTGCT |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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30 #################################################################################################### |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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31 4 INV 85 NT 0:33 "":"ATATATTCTACATACGTACATCCCTTCGTCCTT" ChrID X BP 97985 98071 BP_range 97985 98071 Supports 1 1 + 0 0 - 1 1 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 16 10 0 0 1 1 |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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32 CGATCTGGATTGCTCAAATTTTAAGACGCCCAATAAAAAATTATGCGCGACATCCAATTTTGTAACTCCCTGCATTTTTCCCCCGCTCATCACACCAGTTTTCAAAAGCAAGGCAGCTCAATCTGgccgctgcgctgcaagcagagacattgatgctacagggtaacggctggcgggtgggtccgtttctggcttttgattcctcataaacagattgagctgccttgcttttgaaaactggtgtgatgag |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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33 ---------------------------------------------------------------------------------------------------- |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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34 atctgtattttgagggggtaggggggcgataacgggtggcgccgctgcgctgcaagcagagacattgatgctacagggtaacggctggcgggtgggtccgtttctggcttttgattcctcataaa GCCACCCGTTATCGCCCCCCTACCCCCTCAAAATACAGATGCACAGCTGCCTCCATGGAAAATCGTGCCCCAGAGCCGTAGAGCACCCCCTATACTCGTCAATGATGTGAAGGAAATTGTCCCTC |
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decc6b5631dc
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
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35 CCACATAAAATATATTCTACATACGTACATCCCTTCGTCCTTGCCACCCGTTATCGCCCCCCTACCCCCTCAAAATACAGATGCACAGCTGCCTCCATGGAAAATCGTGCCCCAGAGCCGTAGAG - 98195 0 X_100000_Hum1.bam @HWI-22154325/1 |