Mercurial > repos > artbio > probecoverage

comparison test-data/coverage_pysam.tab @ 6:7c4feda2d9c7 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/probecoverage commit 62a8b073b9ac98b0231641e5266768e7f8b80b89"
author artbio
date Tue, 07 Jan 2020 06:08:56 -0500
parents 35d2db3753d9
children
comparison
equal deleted inserted replaced
5:2ec6529e555d 6:7c4feda2d9c7
671 chr16 20359522 20359695 uc002dgz.3_exon_7_0_chr16_20359545_r;uc002dha.3_exon_7_0_chr16_20359545_r;uc002dhb.3_exon_7_0_chr16_20359545_r 0.0 0.0 0.0 671 chr16 20359522 20359695 uc002dgz.3_exon_7_0_chr16_20359545_r;uc002dha.3_exon_7_0_chr16_20359545_r;uc002dhb.3_exon_7_0_chr16_20359545_r 0.0 0.0 0.0
672 chr16 20359732 20360574 uc002dgz.3_exon_8_0_chr16_20359758_r;uc002dha.3_exon_8_0_chr16_20359758_r;uc002dhb.3_exon_8_0_chr16_20359758_r 0.0 0.0 0.0 672 chr16 20359732 20360574 uc002dgz.3_exon_8_0_chr16_20359758_r;uc002dha.3_exon_8_0_chr16_20359758_r;uc002dhb.3_exon_8_0_chr16_20359758_r 0.0 0.0 0.0
673 chr16 20361067 20361208 uc002dhb.3_exon_9_0_chr16_20361093_r 0.0 0.0 0.0 673 chr16 20361067 20361208 uc002dhb.3_exon_9_0_chr16_20361093_r 0.0 0.0 0.0
674 chr16 20361937 20362204 uc002dgz.3_exon_9_0_chr16_20361972_r;uc002dha.3_exon_9_0_chr16_20361972_r;uc002dhb.3_exon_10_0_chr16_20361972_r 0.0 0.0 0.0 674 chr16 20361937 20362204 uc002dgz.3_exon_9_0_chr16_20361972_r;uc002dha.3_exon_9_0_chr16_20361972_r;uc002dhb.3_exon_10_0_chr16_20361972_r 0.0 0.0 0.0
675 chr16 20363947 20364103 uc002dgz.3_exon_10_0_chr16_20364011_r;uc002dha.3_exon_10_0_chr16_20364011_r;uc002dhb.3_exon_11_0_chr16_20364011_r 0.0 0.0 0.0 675 chr16 20363947 20364103 uc002dgz.3_exon_10_0_chr16_20364011_r;uc002dha.3_exon_10_0_chr16_20364011_r;uc002dhb.3_exon_11_0_chr16_20364011_r 0.0 0.0 0.0
676 chr19 3094375 3094805 uc002lxd.3_exon_0_0_chr19_3094408_f 3.96519721578 0.0 0.0 676 chr19 3094375 3094805 uc002lxd.3_exon_0_0_chr19_3094408_f 3.965197215777262 0.0 0.0
677 chr19 3110125 3110366 uc002lxd.3_exon_1_0_chr19_3110147_f 170.958677686 0.0 0.0 677 chr19 3110125 3110366 uc002lxd.3_exon_1_0_chr19_3110147_f 170.95867768595042 0.0 0.0
678 chr19 3113305 3113513 uc002lxd.3_exon_2_0_chr19_3113328_f 96.8229665072 0.0 0.0 678 chr19 3113305 3113513 uc002lxd.3_exon_2_0_chr19_3113328_f 96.82296650717703 0.0 0.0
679 chr19 3114915 3115090 uc002lxd.3_exon_3_0_chr19_3114942_f 18.6022727273 0.0 0.0 679 chr19 3114915 3115090 uc002lxd.3_exon_3_0_chr19_3114942_f 18.602272727272727 0.0 0.0
680 chr19 3118900 3119070 uc002lxd.3_exon_4_0_chr19_3118922_f 288.304093567 0.0 0.0 680 chr19 3118900 3119070 uc002lxd.3_exon_4_0_chr19_3118922_f 288.30409356725147 0.0 0.0
681 chr19 3119175 3119384 uc002lxd.3_exon_5_0_chr19_3119204_f 611.423809524 0.0 0.0 681 chr19 3119175 3119384 uc002lxd.3_exon_5_0_chr19_3119204_f 611.4238095238095 0.0 0.0
682 chr19 3120965 3121304 uc002lxd.3_exon_6_0_chr19_3120987_f 267.808823529 0.0 0.0 682 chr19 3120965 3121304 uc002lxd.3_exon_6_0_chr19_3120987_f 267.80882352941177 0.0 0.0
683 chr19 3121310 3121447 uc002lxd.3_exon_6_0_chr19_3120987_f 1155.32608696 0.0 0.0 683 chr19 3121310 3121447 uc002lxd.3_exon_6_0_chr19_3120987_f 1155.3260869565217 0.0 0.0
684 chr19 47341397 47341813 uc002pft.1_exon_0_0_chr19_47341423_r;uc002pfu.1_exon_0_0_chr19_47341423_r 287.717026379 0.0 0.0 684 chr19 47341397 47341813 uc002pft.1_exon_0_0_chr19_47341423_r;uc002pfu.1_exon_0_0_chr19_47341423_r 287.7170263788969 0.0 0.0
685 chr19 47341952 47342086 uc002pft.1_exon_1_0_chr19_47341997_r;uc002pfu.1_exon_1_0_chr19_47341997_r 1049.35555556 0.0 0.0 685 chr19 47341952 47342086 uc002pft.1_exon_1_0_chr19_47341997_r;uc002pfu.1_exon_1_0_chr19_47341997_r 1049.3555555555556 0.0 0.0
686 chr19 47342697 47342876 uc002pft.1_exon_2_0_chr19_47342722_r 1050.62222222 0.0 0.0 686 chr19 47342697 47342876 uc002pft.1_exon_2_0_chr19_47342722_r 1050.6222222222223 0.0 0.0
687 chr19 47349227 47349441 uc002pft.1_exon_3_0_chr19_47349250_r;uc002pfu.1_exon_2_0_chr19_47349250_r 712.423255814 0.0 0.0 687 chr19 47349227 47349441 uc002pft.1_exon_3_0_chr19_47349250_r;uc002pfu.1_exon_2_0_chr19_47349250_r 712.4232558139535 0.0 0.0
688 chr19 47353997 47354239 uc002pft.1_exon_4_0_chr19_47354021_r;uc002pfu.1_exon_3_0_chr19_47354021_r 663.609053498 0.0 0.0 688 chr19 47353997 47354239 uc002pft.1_exon_4_0_chr19_47354021_r;uc002pfu.1_exon_3_0_chr19_47354021_r 663.6090534979423 0.0 0.0
689 chr20 52769992 52770580 uc002xwu.1_exon_0_0_chr20_52769988_r;uc002xwv.2_exon_0_0_chr20_52769988_r;uc002xww.2_exon_0_0_chr20_52769988_r 0.0 1507.49575552 0.0 689 chr20 52769992 52770580 uc002xwu.1_exon_0_0_chr20_52769988_r;uc002xwv.2_exon_0_0_chr20_52769988_r;uc002xww.2_exon_0_0_chr20_52769988_r 0.0 1507.4957555178269 0.0
690 chr20 52770622 52770705 uc002xwu.1_exon_0_0_chr20_52769988_r;uc002xwv.2_exon_0_0_chr20_52769988_r;uc002xww.2_exon_0_0_chr20_52769988_r 0.0 1234.73809524 0.0 690 chr20 52770622 52770705 uc002xwu.1_exon_0_0_chr20_52769988_r;uc002xwv.2_exon_0_0_chr20_52769988_r;uc002xww.2_exon_0_0_chr20_52769988_r 0.0 1234.7380952380952 0.0
691 chr20 52770707 52771336 uc002xwu.1_exon_0_0_chr20_52769988_r;uc002xwv.2_exon_0_0_chr20_52769988_r;uc002xww.2_exon_0_0_chr20_52769988_r 0.0 1783.23650794 0.0 691 chr20 52770707 52771336 uc002xwu.1_exon_0_0_chr20_52769988_r;uc002xwv.2_exon_0_0_chr20_52769988_r;uc002xww.2_exon_0_0_chr20_52769988_r 0.0 1783.236507936508 0.0
692 chr20 52773678 52773860 uc002xwu.1_exon_1_0_chr20_52773708_r;uc002xwv.2_exon_1_0_chr20_52773708_r;uc002xww.2_exon_1_0_chr20_52773708_r 0.0 1673.20218579 0.0 692 chr20 52773678 52773860 uc002xwu.1_exon_1_0_chr20_52773708_r;uc002xwv.2_exon_1_0_chr20_52773708_r;uc002xww.2_exon_1_0_chr20_52773708_r 0.0 1673.2021857923498 0.0
693 chr20 52773898 52774150 uc002xwu.1_exon_2_0_chr20_52773927_r;uc002xwv.2_exon_2_0_chr20_52773927_r 0.0 1698.91699605 0.0 693 chr20 52773898 52774150 uc002xwu.1_exon_2_0_chr20_52773927_r;uc002xwv.2_exon_2_0_chr20_52773927_r 0.0 1698.9169960474308 0.0
694 chr20 52774593 52774726 uc002xwu.1_exon_3_0_chr20_52774625_r;uc002xwv.2_exon_3_0_chr20_52774625_r;uc002xww.2_exon_2_0_chr20_52774625_r 0.0 1404.41044776 0.0 694 chr20 52774593 52774726 uc002xwu.1_exon_3_0_chr20_52774625_r;uc002xwv.2_exon_3_0_chr20_52774625_r;uc002xww.2_exon_2_0_chr20_52774625_r 0.0 1404.410447761194 0.0
695 chr20 52775473 52775682 uc002xwu.1_exon_4_0_chr20_52775496_r;uc002xwv.2_exon_4_0_chr20_52775496_r;uc002xww.2_exon_3_0_chr20_52775496_r 0.0 1817.36190476 0.0 695 chr20 52775473 52775682 uc002xwu.1_exon_4_0_chr20_52775496_r;uc002xwv.2_exon_4_0_chr20_52775496_r;uc002xww.2_exon_3_0_chr20_52775496_r 0.0 1817.3619047619047 0.0
696 chr20 52779223 52779439 uc002xwu.1_exon_5_0_chr20_52779256_r;uc002xwv.2_exon_5_0_chr20_52779256_r;uc002xww.2_exon_4_0_chr20_52779256_r 0.0 1642.65437788 0.0 696 chr20 52779223 52779439 uc002xwu.1_exon_5_0_chr20_52779256_r;uc002xwv.2_exon_5_0_chr20_52779256_r;uc002xww.2_exon_4_0_chr20_52779256_r 0.0 1642.6543778801843 0.0
697 chr20 52780968 52781144 uc002xwu.1_exon_6_0_chr20_52780991_r;uc002xwv.2_exon_6_0_chr20_52780991_r;uc002xww.2_exon_5_0_chr20_52780991_r 0.0 1448.11864407 0.0 697 chr20 52780968 52781144 uc002xwu.1_exon_6_0_chr20_52780991_r;uc002xwv.2_exon_6_0_chr20_52780991_r;uc002xww.2_exon_5_0_chr20_52780991_r 0.0 1448.1186440677966 0.0
698 chr20 52782253 52782397 uc002xwu.1_exon_7_0_chr20_52782281_r;uc002xwv.2_exon_7_0_chr20_52782281_r;uc002xww.2_exon_6_0_chr20_52782281_r 0.0 1498.3862069 0.0 698 chr20 52782253 52782397 uc002xwu.1_exon_7_0_chr20_52782281_r;uc002xwv.2_exon_7_0_chr20_52782281_r;uc002xww.2_exon_6_0_chr20_52782281_r 0.0 1498.3862068965518 0.0
699 chr20 52786108 52786244 uc002xwu.1_exon_8_0_chr20_52786131_r;uc002xwv.2_exon_8_0_chr20_52786131_r;uc002xww.2_exon_7_0_chr20_52786131_r 0.0 1635.86861314 0.0 699 chr20 52786108 52786244 uc002xwu.1_exon_8_0_chr20_52786131_r;uc002xwv.2_exon_8_0_chr20_52786131_r;uc002xww.2_exon_7_0_chr20_52786131_r 0.0 1635.8686131386862 0.0
700 chr20 52788093 52788504 uc002xwu.1_exon_9_0_chr20_52788116_r;uc002xwv.2_exon_9_0_chr20_52788116_r;uc002xww.2_exon_8_0_chr20_52788116_r 0.0 1655.84708738 0.0 700 chr20 52788093 52788504 uc002xwu.1_exon_9_0_chr20_52788116_r;uc002xwv.2_exon_9_0_chr20_52788116_r;uc002xww.2_exon_8_0_chr20_52788116_r 0.0 1655.8470873786407 0.0
701 chr20 52789423 52789663 uc002xwv.2_exon_10_0_chr20_52789448_r;uc002xww.2_exon_9_0_chr20_52789448_r 0.0 166.136929461 0.0 701 chr20 52789423 52789663 uc002xwv.2_exon_10_0_chr20_52789448_r;uc002xww.2_exon_9_0_chr20_52789448_r 0.0 166.13692946058092 0.0
702 chr20 52789828 52790550 uc002xwv.2_exon_11_0_chr20_52789861_r;uc002xww.2_exon_10_0_chr20_52789861_r 0.0 275.312586445 0.0 702 chr20 52789828 52790550 uc002xwv.2_exon_11_0_chr20_52789861_r;uc002xww.2_exon_10_0_chr20_52789861_r 0.0 275.31258644536655 0.0
703 chr21 37832893 37833027 uc002yvk.2_exon_0_0_chr21_37832920_r;uc002yvl.1_exon_0_0_chr21_37832920_r;uc002yvm.1_exon_0_0_chr21_37832920_r;uc002yvn.2_exon_0_0_chr21_37832920_r;uc002yvo.1_exon_0_0_chr21_37832920_r;uc021wja.1_exon_0_0_chr21_37833274_r 0.0 0.0 1415.82222222 703 chr21 37832893 37833027 uc002yvk.2_exon_0_0_chr21_37832920_r;uc002yvl.1_exon_0_0_chr21_37832920_r;uc002yvm.1_exon_0_0_chr21_37832920_r;uc002yvn.2_exon_0_0_chr21_37832920_r;uc002yvo.1_exon_0_0_chr21_37832920_r;uc021wja.1_exon_0_0_chr21_37833274_r 0.0 0.0 1415.8222222222223
704 chr21 37833063 37834107 uc002yvk.2_exon_0_0_chr21_37832920_r;uc002yvl.1_exon_0_0_chr21_37832920_r;uc002yvm.1_exon_0_0_chr21_37832920_r;uc002yvn.2_exon_0_0_chr21_37832920_r;uc002yvo.1_exon_0_0_chr21_37832920_r;uc021wja.1_exon_0_0_chr21_37833274_r 0.0 0.0 292.412440191 704 chr21 37833063 37834107 uc002yvk.2_exon_0_0_chr21_37832920_r;uc002yvl.1_exon_0_0_chr21_37832920_r;uc002yvm.1_exon_0_0_chr21_37832920_r;uc002yvn.2_exon_0_0_chr21_37832920_r;uc002yvo.1_exon_0_0_chr21_37832920_r;uc021wja.1_exon_0_0_chr21_37833274_r 0.0 0.0 292.41244019138753
705 chr21 37849648 37849906 uc002yvl.1_exon_1_0_chr21_37849672_r 0.0 0.0 1593.73745174 705 chr21 37849648 37849906 uc002yvl.1_exon_1_0_chr21_37849672_r 0.0 0.0 1593.7374517374517
706 chr21 37851763 37852430 uc002yvl.1_exon_2_0_chr21_37851793_r;uc002yvm.1_exon_1_0_chr21_37851793_r 0.0 0.0 989.193113772 706 chr21 37851763 37852430 uc002yvl.1_exon_2_0_chr21_37851793_r;uc002yvm.1_exon_1_0_chr21_37851793_r 0.0 0.0 989.193113772455
707 chr21 37882628 37882821 uc002yvn.2_exon_1_0_chr21_37882661_r;uc002yvo.1_exon_1_0_chr21_37882661_r 0.0 0.0 1711.39175258 707 chr21 37882628 37882821 uc002yvn.2_exon_1_0_chr21_37882661_r;uc002yvo.1_exon_1_0_chr21_37882661_r 0.0 0.0 1711.3917525773195
708 chr21 37914828 37915151 uc002yvn.2_exon_2_0_chr21_37914863_r 0.0 0.0 64.7283950617 708 chr21 37914828 37915151 uc002yvn.2_exon_2_0_chr21_37914863_r 0.0 0.0 64.72839506172839
709 chr21 37948678 37948900 uc002yvo.1_exon_2_0_chr21_37948709_r 0.0 0.0 1027.15695067 709 chr21 37948678 37948900 uc002yvo.1_exon_2_0_chr21_37948709_r 0.0 0.0 1027.1569506726457
710 chrX 22050889 22051274 uc004dah.3_exon_0_0_chrX_22050921_f;uc011mjr.2_exon_0_0_chrX_22050921_f 0.0 0.0 0.0 710 chrX 22050889 22051274 uc004dah.3_exon_0_0_chrX_22050921_f;uc011mjr.2_exon_0_0_chrX_22050921_f 0.0 0.0 0.0
711 chrX 22056139 22056214 uc004dah.3_exon_1_0_chrX_22056587_f;uc011mjr.2_exon_1_0_chrX_22056587_f;uc011mjs.2_exon_0_0_chrX_22056171_f 0.0 0.0 0.0 711 chrX 22056139 22056214 uc004dah.3_exon_1_0_chrX_22056587_f;uc011mjr.2_exon_1_0_chrX_22056587_f;uc011mjs.2_exon_0_0_chrX_22056171_f 0.0 0.0 0.0
712 chrX 22056229 22056691 uc004dah.3_exon_1_0_chrX_22056587_f;uc011mjr.2_exon_1_0_chrX_22056587_f;uc011mjs.2_exon_0_0_chrX_22056171_f 0.0 0.0 0.0 712 chrX 22056229 22056691 uc004dah.3_exon_1_0_chrX_22056587_f;uc011mjr.2_exon_1_0_chrX_22056587_f;uc011mjs.2_exon_0_0_chrX_22056171_f 0.0 0.0 0.0
713 chrX 22065134 22065345 uc004dah.3_exon_2_0_chrX_22065168_f;uc011mjr.2_exon_2_0_chrX_22065168_f;uc011mjs.2_exon_1_0_chrX_22065168_f 0.0 0.0 0.0 713 chrX 22065134 22065345 uc004dah.3_exon_2_0_chrX_22065168_f;uc011mjr.2_exon_2_0_chrX_22065168_f;uc011mjs.2_exon_1_0_chrX_22065168_f 0.0 0.0 0.0
714 chrX 22094469 22094612 uc004dah.3_exon_3_0_chrX_22094506_f;uc011mjr.2_exon_3_0_chrX_22094506_f;uc011mjs.2_exon_2_0_chrX_22094506_f 0.0 0.0 0.0 714 chrX 22094469 22094612 uc004dah.3_exon_3_0_chrX_22094506_f;uc011mjr.2_exon_3_0_chrX_22094506_f;uc011mjs.2_exon_2_0_chrX_22094506_f 0.0 0.0 0.0