# HG changeset patch
# User artbio
# Date 1506185777 14400
# Node ID ebe5ec2e244d5e16f05f03b8db5a6402bb325ecc
# Parent  dbeb4a0abfc63333617075cf866d6dd649b3c958
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/probecoverage commit 0d963d33685a407873cd17924c7ec2b6255b006f

diff -r dbeb4a0abfc6 -r ebe5ec2e244d probecoverage.r
--- a/probecoverage.r	Sat Sep 23 05:11:49 2017 -0400
+++ b/probecoverage.r	Sat Sep 23 12:56:17 2017 -0400
@@ -32,6 +32,7 @@
 ## function
 
 cumul <- function(x,y) sum(Table[,y]/(Table$end-Table$start) > x)/length(Table$chromosome)
+scaleFUN <- function(x) sprintf("%.3f", x)
 
 ## end of function
 ## let's do a dataframe before plotting
@@ -50,12 +51,15 @@
 ## GRAPHS
 
 pdf(file=args$output)
-ggplot(data=graphpoints, aes(x=Depth, y=sample_value, group=Samples, colour=Samples)) +
+ggplot(data=graphpoints, aes(x=Depth, y=sample_value, colour=Samples)) +
       geom_line(size=1) +
       scale_x_continuous(trans='log2', breaks = 2^(seq(0,log(maxdepth, 2)))) +
-      scale_y_continuous(breaks = seq(0, maxfrac, by=maxfrac/10)) +
+      scale_y_continuous(breaks = seq(0, maxfrac, by=maxfrac/10), labels=scaleFUN) +
       labs(x=args$xlab, y=args$ylab, title=args$title) +
       theme(legend.position="top", legend.title=element_blank(), legend.text=element_text(colour="blue", size=7))
+      
+      
+##      facet_wrap(~Samples, ncol=2)
 
 devname=dev.off()
 
diff -r dbeb4a0abfc6 -r ebe5ec2e244d probecoverage.xml
--- a/probecoverage.xml	Sat Sep 23 05:11:49 2017 -0400
+++ b/probecoverage.xml	Sat Sep 23 12:56:17 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="probecoverage" name="Probe Coverage" version="0.1.0">
+<tool id="probecoverage" name="Probe Coverage" version="0.2.0">
   <description></description>
   <requirements>
         <requirement type="package" version="1.4.1">samtools</requirement>
diff -r dbeb4a0abfc6 -r ebe5ec2e244d test-data/graph.pdf
Binary file test-data/graph.pdf has changed