Mercurial > repos > artbio > repenrich

diff test-data/356_fraction_counts.tab @ 2:15e3e29f310e draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit c89c33e5ea8fc63f3ea5c0f66ebc5fa822ac734b
author artbio
date Tue, 19 Sep 2017 17:23:15 -0400
parents f6f0f1e5e940
children
line wrap: on
line diff
--- a/test-data/356_fraction_counts.tab	Mon Sep 18 17:22:07 2017 -0400
+++ b/test-data/356_fraction_counts.tab	Tue Sep 19 17:23:15 2017 -0400
@@ -1,210 +1,210 @@
-LSU-rRNA_Dme	rRNA	rRNA	5583038
-FW3_DM	LINE	Jockey	647
-DMTOM1_LTR	LTR	Gypsy	1403
-R1_DM	LINE	R1	15424
-TAHRE	LINE	Jockey	3806
-G4_DM	LINE	Jockey	2223
-BS	LINE	Jockey	5200
-Stalker2_I-int	LTR	Gypsy	10966
-Stalker3_LTR	LTR	Gypsy	543
-TABOR_I-int	LTR	Gypsy	5504
-G7_DM	LINE	Jockey	1949
-BEL_I-int	LTR	Pao	29338
-Gypsy6_I-int	LTR	Gypsy	11381
+5S_DM	RNA	RNA	6331
 ACCORD_I-int	LTR	Gypsy	4103
-DM412B_LTR	LTR	Gypsy	5607
-G2_DM	LINE	Jockey	1235
-SSU-rRNA_Hsa	rRNA	rRNA	563673
-TART_B1	LINE	Jockey	13382
-S2_DM	DNA	TcMar-Tc1	716
-LOOPER1_DM	DNA	PiggyBac	220
-HOBO	DNA	hAT-hobo	4375
+ACCORD_LTR	LTR	Gypsy	790
+ACCORD2_I-int	LTR	Gypsy	2286
+ACCORD2_LTR	LTR	Gypsy	213
+ALA_DM	Unknown	Unknown	9
 ARS406_DM	Unknown	Unknown	755
-G6_DM	LINE	Jockey	2874
-DOC2_DM	LINE	Jockey	4511
 Baggins1	LINE	LOA	5500
-NINJA_LTR	LTR	Pao	297
-TRANSIB2	DNA	CMC-Transib	3357
-Gypsy5_LTR	LTR	Gypsy	502
-MDG3_LTR	LTR	Gypsy	926
-Gypsy12A_LTR	LTR	Gypsy	2436
-Gypsy_LTR	LTR	Gypsy	3771
-TIRANT_LTR	LTR	Gypsy	3225
-I_DM	LINE	I	11479
-DIVER2_I-int	LTR	Pao	6446
-P-1_DY	DNA	P	13
-Invader2_I-int	LTR	Gypsy	5970
-DOC6_DM	LINE	Jockey	1718
-BURDOCK_LTR	LTR	Gypsy	543
-SSU-rRNA_Dme	rRNA	rRNA	9958
-MAX_LTR	LTR	Pao	958
-STALKER4_LTR	LTR	Gypsy	2040
-XDMR_DM	Unknown	Unknown	4049
 BARI_DM	DNA	TcMar-Tc1	1117
-Transib-N1_DM	DNA	CMC-Transib	366
-Gypsy5_I-int	LTR	Gypsy	2834
-XDMR	Unknown	Unknown	1771
-ACCORD2_LTR	LTR	Gypsy	213
-POGON1	DNA	TcMar-Pogo	641
+BARI1	DNA	TcMar-Tc1	370
+BATUMI_I-int	LTR	Pao	4723
+BATUMI_LTR	LTR	Pao	348
+BEL_I-int	LTR	Pao	29338
+BEL_LTR	LTR	Pao	927
+Bica_I-int	LTR	Gypsy	1561
+Bica_LTR	LTR	Gypsy	123
+BLASTOPIA_I-int	LTR	Gypsy	13780
+BLASTOPIA_LTR	LTR	Gypsy	1038
+BLOOD_I-int	LTR	Gypsy	27362
+BLOOD_LTR	LTR	Gypsy	1269
+BS	LINE	Jockey	5200
+BS2	LINE	Jockey	5214
+BS3_DM	LINE	Jockey	851
 BS4_DM	LINE	Jockey	8
-ALA_DM	Unknown	Unknown	9
-Gypsy1-I_DM	LTR	Gypsy	36962
-ACCORD_LTR	LTR	Gypsy	790
 BURDOCK_I-int	LTR	Gypsy	5190
-ZAM_I-int	LTR	Gypsy	6896
-Invader5_I-int	LTR	Gypsy	191
-G3_DM	LINE	Jockey	480
-ROOA_I-int	LTR	Pao	4103
-Gypsy1-LTR_DM	LTR	Gypsy	1432
+BURDOCK_LTR	LTR	Gypsy	543
+Chimpo_I-int	LTR	Gypsy	1366
+Chimpo_LTR	LTR	Gypsy	107
+Chouto_I-int	LTR	Gypsy	1231
+Chouto_LTR	LTR	Gypsy	162
+CIRCE	LTR	Gypsy	3676
+Copia_I-int	LTR	Copia	50888
+Copia_LTR	LTR	Copia	2612
+Copia1-I_DM	LTR	Copia	4100
+Copia1-LTR_DM	LTR	Copia	600
+Copia2_I-int	LTR	Copia	3614
+Copia2_LTR_DM	LTR	Copia	747
+DIVER_I-int	LTR	Pao	24742
+DIVER_LTR	LTR	Pao	547
+DIVER2_I-int	LTR	Pao	6446
+DIVER2_LTR	LTR	Pao	648
 DM1731_I-int	LTR	Copia	18829
-ROO_I-int	LTR	Pao	34023
+DM1731_LTR	LTR	Copia	1274
+DM176_I-int	LTR	Gypsy	4726
+DM176_LTR	LTR	Gypsy	560
+DM297_I-int	LTR	Gypsy	82387
+DM297_LTR	LTR	Gypsy	6128
 DM412	LTR	Gypsy	43689
-PROTOP	DNA	P	4775
-TART-A	LINE	Jockey	5092
-ROO_LTR	LTR	Pao	2219
-DIVER_LTR	LTR	Pao	547
-Gypsy3_I-int	LTR	Gypsy	5766
-BATUMI_LTR	LTR	Pao	348
-IDEFIX_LTR	LTR	Gypsy	2538
-G5_DM	LINE	Jockey	2714
-HETA	LINE	Jockey	22459
-Gypsy11_I-int	LTR	Gypsy	487
-R1-2_DM	LINE	R1	184
-Gypsy11_LTR	LTR	Gypsy	159
-HELENA_RT	LINE	Jockey	934
-FTZ_DM	Unknown	Unknown	0
-MICROPIA_I-int	LTR	Gypsy	6941
-Invader4_I-int	LTR	Gypsy	1888
-PLACW_DM	DNA	P	277
-BLOOD_LTR	LTR	Gypsy	1269
-R2_DM	LINE	R2	54042
-Copia1-I_DM	LTR	Copia	4100
-Gypsy4_I-int	LTR	Gypsy	13114
-Chouto_LTR	LTR	Gypsy	162
-BATUMI_I-int	LTR	Pao	4723
-DNAREP1_DM	RC	Helitron	76851
+DM412B_LTR	LTR	Gypsy	5607
+DMCR1A	LINE	CR1	17489
+DMLTR5	LTR	Gypsy	189
+DMRP1	Unknown	Unknown	295
+DMRPR	Unknown	Unknown	221
+DMRT1A	LINE	R1	3797
 DMRT1B	LINE	R1	9003
 DMRT1C	LINE	R1	1907
-TLD2	LTR	Gypsy	33
-DMRT1A	LINE	R1	3797
-DM1731_LTR	LTR	Copia	1274
-LSU-rRNA_Cel	rRNA	rRNA	363697
-Copia_LTR	LTR	Copia	2612
+DMTOM1_LTR	LTR	Gypsy	1403
+DNAREP1_DM	RC	Helitron	76851
+DOC	LINE	Jockey	29082
+DOC2_DM	LINE	Jockey	4511
+DOC3_DM	LINE	Jockey	11067
+DOC4_DM	LINE	Jockey	1030
+DOC5_DM	LINE	Jockey	1793
+DOC6_DM	LINE	Jockey	1718
+FB4_DM	DNA	TcMar-Tc1	7840
+FROGGER_I-int	LTR	Copia	1075
+FROGGER_LTR	LTR	Copia	85
+FTZ_DM	Unknown	Unknown	0
+FUSHI_DM	Unknown	Unknown	0
+FW2_DM	LINE	Jockey	17723
+FW3_DM	LINE	Jockey	647
+G_DM	LINE	Jockey	10948
+G2_DM	LINE	Jockey	1235
+G3_DM	LINE	Jockey	480
+G4_DM	LINE	Jockey	2223
+G5_DM	LINE	Jockey	2714
+G5A_DM	LINE	Jockey	1578
+G6_DM	LINE	Jockey	2874
+G7_DM	LINE	Jockey	1949
+GTWIN_I-int	LTR	Gypsy	7568
+GTWIN_LTR	LTR	Gypsy	2533
+Gypsy_I-int	LTR	Gypsy	24082
+Gypsy_LTR	LTR	Gypsy	3771
+Gypsy1-I_DM	LTR	Gypsy	36962
+Gypsy1-LTR_DM	LTR	Gypsy	1432
+Gypsy10_I-int	LTR	Gypsy	2236
+Gypsy10_LTR	LTR	Gypsy	363
+Gypsy11_I-int	LTR	Gypsy	487
+Gypsy11_LTR	LTR	Gypsy	159
+Gypsy12_I-int	LTR	Gypsy	5002
+Gypsy12_LTR	LTR	Gypsy	7572
+Gypsy12A_LTR	LTR	Gypsy	2436
+Gypsy2_I-int	LTR	Gypsy	4226
+Gypsy2_LTR	LTR	Gypsy	869
+Gypsy2-I_DM	LTR	Gypsy	7374
+Gypsy2-LTR_DM	LTR	Gypsy	1155
+Gypsy3_I-int	LTR	Gypsy	5766
+Gypsy3_LTR	LTR	Gypsy	681
+Gypsy4_I-int	LTR	Gypsy	13114
+Gypsy4_LTR	LTR	Gypsy	390
+Gypsy5_I-int	LTR	Gypsy	2834
+Gypsy5_LTR	LTR	Gypsy	502
+Gypsy6_I-int	LTR	Gypsy	11381
 Gypsy6_LTR	LTR	Gypsy	1423
-Gypsy12_I-int	LTR	Gypsy	5002
-BLASTOPIA_LTR	LTR	Gypsy	1038
-Bica_LTR	LTR	Gypsy	123
+Gypsy6A_LTR	LTR	Gypsy	793
+Gypsy7_I-int	LTR	Gypsy	1162
+Gypsy7_LTR	LTR	Gypsy	80
+Gypsy8_I-int	LTR	Gypsy	4176
 Gypsy8_LTR	LTR	Gypsy	1467
-NINJA_I-int	LTR	Pao	3676
-PROTOP_B	DNA	P	9371
-PROTOP_A	DNA	P	4465
+Gypsy9_I-int	LTR	Gypsy	429
+Gypsy9_LTR	LTR	Gypsy	62
+HELENA_RT	LINE	Jockey	934
+Helitron1_DM	RC	Helitron	0
+HETA	LINE	Jockey	22459
+HMSBEAGLE_I-int	LTR	Gypsy	7863
+HOBO	DNA	hAT-hobo	4375
+I_DM	LINE	I	11479
+IDEFIX_I-int	LTR	Gypsy	7222
+IDEFIX_LTR	LTR	Gypsy	2538
+Invader1_I-int	LTR	Gypsy	2993
+Invader1_LTR	LTR	Gypsy	2525
+Invader2_I-int	LTR	Gypsy	5970
+Invader2_LTR	LTR	Gypsy	417
+Invader3_I-int	LTR	Gypsy	4411
 Invader3_LTR	LTR	Gypsy	506
-Chimpo_LTR	LTR	Gypsy	107
-Invader2_LTR	LTR	Gypsy	417
-BLASTOPIA_I-int	LTR	Gypsy	13780
-FROGGER_LTR	LTR	Copia	85
+Invader4_I-int	LTR	Gypsy	1888
+Invader4_LTR	LTR	Gypsy	1624
+Invader5_I-int	LTR	Gypsy	191
+Invader5_LTR	LTR	Gypsy	47
+Invader6_I-int	LTR	Gypsy	6566
+Invader6_LTR	LTR	Gypsy	312
+IVK_DM	LINE	I	3025
+Jockey2	LINE	Jockey	1823
+LINEJ1_DM	LINE	Jockey	24891
+LmeSINE1c	SINE	tRNA-Deu-L2	627
+LOOPER1_DM	DNA	PiggyBac	220
+LSU-rRNA_Cel	rRNA	rRNA	363697
+LSU-rRNA_Dme	rRNA	rRNA	5583038
+LSU-rRNA_Hsa	rRNA	rRNA	15
+M4DM	DNA	CMC-Transib	1880
+Mariner2_DM	DNA	TcMar-Tc1	1096
+MAX_I-int	LTR	Pao	8914
+MAX_LTR	LTR	Pao	958
+MDG1_I-int	LTR	Gypsy	16306
+MDG1_LTR	LTR	Gypsy	650
+MDG3_I-int	LTR	Gypsy	7857
+MDG3_LTR	LTR	Gypsy	926
+MICROPIA_I-int	LTR	Gypsy	6941
+MICROPIA_LTR	LTR	Gypsy	460
+MINOS	DNA	TcMar-Tc1	273
+MuDR-1_DEl	DNA	MULE-NOF	32
+NINJA_I-int	LTR	Pao	3676
+NINJA_LTR	LTR	Pao	297
+NOF_FB	DNA	MULE-NOF	228
 NOMAD_I-int	LTR	Gypsy	11614
+NOMAD_LTR	LTR	Gypsy	757
+NTS_DM	Other	Other	56043
+P-1_DY	DNA	P	13
+PLACW_DM	DNA	P	277
+POGO	DNA	TcMar-Pogo	2909
+POGON1	DNA	TcMar-Pogo	641
+PROTOP	DNA	P	4775
+PROTOP_A	DNA	P	4465
+PROTOP_B	DNA	P	9371
+QUASIMODO_I-int	LTR	Gypsy	17910
 QUASIMODO_LTR	LTR	Gypsy	1625
-TABOR_LTR	LTR	Gypsy	443
-Stalker2_LTR	LTR	Gypsy	790
-MICROPIA_LTR	LTR	Gypsy	460
-Gypsy9_I-int	LTR	Gypsy	429
-STALKER4_I-int	LTR	Gypsy	7287
-TRANSIB1	DNA	CMC-Transib	1229
-DOC	LINE	Jockey	29082
-TRANSIB3	DNA	CMC-Transib	1802
-Copia_I-int	LTR	Copia	50888
-TRANSIB4	DNA	CMC-Transib	364
-Gypsy10_LTR	LTR	Gypsy	363
-Invader3_I-int	LTR	Gypsy	4411
-Invader1_I-int	LTR	Gypsy	2993
-BS3_DM	LINE	Jockey	851
-Gypsy2-LTR_DM	LTR	Gypsy	1155
-LSU-rRNA_Hsa	rRNA	rRNA	15
-NOMAD_LTR	LTR	Gypsy	757
-Helitron1_DM	RC	Helitron	0
-LINEJ1_DM	LINE	Jockey	24891
-Invader4_LTR	LTR	Gypsy	1624
-MDG3_I-int	LTR	Gypsy	7857
-LmeSINE1c	SINE	tRNA-Deu-L2	627
+QUASIMODO2-I_DM	LTR	Gypsy	3977
+QUASIMODO2-LTR_DM	LTR	Gypsy	298
+R1_DM	LINE	R1	15424
+R1-2_DM	LINE	R1	184
+R2_DM	LINE	R2	54042
+ROO_I-int	LTR	Pao	34023
+ROO_LTR	LTR	Pao	2219
+ROOA_I-int	LTR	Pao	4103
+ROOA_LTR	LTR	Pao	435
+ROVER-I_DM	LTR	Gypsy	6947
 ROVER-LTR_DM	LTR	Gypsy	415
 S_DM	DNA	TcMar-Tc1	4974
-Invader6_I-int	LTR	Gypsy	6566
-ROVER-I_DM	LTR	Gypsy	6947
-QUASIMODO_I-int	LTR	Gypsy	17910
-Chouto_I-int	LTR	Gypsy	1231
-NTS_DM	Other	Other	56043
-Gypsy3_LTR	LTR	Gypsy	681
+S2_DM	DNA	TcMar-Tc1	716
 SSU-rRNA_Cel	rRNA	rRNA	3855
-MINOS	DNA	TcMar-Tc1	273
-DOC4_DM	LINE	Jockey	1030
-ZAM_LTR	LTR	Gypsy	377
-QUASIMODO2-LTR_DM	LTR	Gypsy	298
-Gypsy2-I_DM	LTR	Gypsy	7374
-TRANSPAC_I-int	LTR	Gypsy	28474
-Bica_I-int	LTR	Gypsy	1561
-BS2	LINE	Jockey	5214
-BLOOD_I-int	LTR	Gypsy	27362
-DMCR1A	LINE	CR1	17489
-QUASIMODO2-I_DM	LTR	Gypsy	3977
-HMSBEAGLE_I-int	LTR	Gypsy	7863
-DMLTR5	LTR	Gypsy	189
-Gypsy7_LTR	LTR	Gypsy	80
-G5A_DM	LINE	Jockey	1578
-MDG1_I-int	LTR	Gypsy	16306
-Gypsy2_I-int	LTR	Gypsy	4226
-BARI1	DNA	TcMar-Tc1	370
-Invader5_LTR	LTR	Gypsy	47
-DM176_LTR	LTR	Gypsy	560
-DOC3_DM	LINE	Jockey	11067
-Copia1-LTR_DM	LTR	Copia	600
-TOM_I-int	LTR	Gypsy	6929
-NOF_FB	DNA	MULE-NOF	228
-Chimpo_I-int	LTR	Gypsy	1366
-DIVER_I-int	LTR	Pao	24742
+SSU-rRNA_Dme	rRNA	rRNA	9958
+SSU-rRNA_Hsa	rRNA	rRNA	563673
+Stalker2_I-int	LTR	Gypsy	10966
+Stalker2_LTR	LTR	Gypsy	790
+Stalker3_LTR	LTR	Gypsy	543
+STALKER4_I-int	LTR	Gypsy	7287
+STALKER4_LTR	LTR	Gypsy	2040
+TABOR_I-int	LTR	Gypsy	5504
+TABOR_LTR	LTR	Gypsy	443
+TAHRE	LINE	Jockey	3806
+TART_B1	LINE	Jockey	13382
+TART-A	LINE	Jockey	5092
+TC1_DM	DNA	TcMar-Tc1	2618
+TC1-2_DM	DNA	TcMar-Tc1	4438
 TIRANT_I-int	LTR	Gypsy	23165
-Gypsy2_LTR	LTR	Gypsy	869
-FB4_DM	DNA	TcMar-Tc1	7840
-GTWIN_LTR	LTR	Gypsy	2533
-Invader6_LTR	LTR	Gypsy	312
-Gypsy8_I-int	LTR	Gypsy	4176
-G_DM	LINE	Jockey	10948
-TRANSPAC_LTR	LTR	Gypsy	1457
-FUSHI_DM	Unknown	Unknown	0
+TIRANT_LTR	LTR	Gypsy	3225
+TLD2	LTR	Gypsy	33
+TOM_I-int	LTR	Gypsy	6929
+Transib-N1_DM	DNA	CMC-Transib	366
+TRANSIB1	DNA	CMC-Transib	1229
+TRANSIB2	DNA	CMC-Transib	3357
+TRANSIB3	DNA	CMC-Transib	1802
+TRANSIB4	DNA	CMC-Transib	364
 Transib5	DNA	CMC-Transib	973
-MuDR-1_DEl	DNA	MULE-NOF	32
-Mariner2_DM	DNA	TcMar-Tc1	1096
-DOC5_DM	LINE	Jockey	1793
-TC1_DM	DNA	TcMar-Tc1	2618
-Gypsy9_LTR	LTR	Gypsy	62
-DMRP1	Unknown	Unknown	295
-Gypsy10_I-int	LTR	Gypsy	2236
-Gypsy4_LTR	LTR	Gypsy	390
-DM297_LTR	LTR	Gypsy	6128
-ACCORD2_I-int	LTR	Gypsy	2286
-Invader1_LTR	LTR	Gypsy	2525
-BEL_LTR	LTR	Pao	927
-IVK_DM	LINE	I	3025
-M4DM	DNA	CMC-Transib	1880
-FW2_DM	LINE	Jockey	17723
-Copia2_I-int	LTR	Copia	3614
-MDG1_LTR	LTR	Gypsy	650
-Gypsy12_LTR	LTR	Gypsy	7572
-Gypsy7_I-int	LTR	Gypsy	1162
-FROGGER_I-int	LTR	Copia	1075
-Gypsy_I-int	LTR	Gypsy	24082
-5S_DM	RNA	RNA	6331
-GTWIN_I-int	LTR	Gypsy	7568
-CIRCE	LTR	Gypsy	3676
-DIVER2_LTR	LTR	Pao	648
-POGO	DNA	TcMar-Pogo	2909
-Gypsy6A_LTR	LTR	Gypsy	793
-MAX_I-int	LTR	Pao	8914
-ROOA_LTR	LTR	Pao	435
-DM176_I-int	LTR	Gypsy	4726
-Copia2_LTR_DM	LTR	Copia	747
-DM297_I-int	LTR	Gypsy	82387
-IDEFIX_I-int	LTR	Gypsy	7222
-Jockey2	LINE	Jockey	1823
-TC1-2_DM	DNA	TcMar-Tc1	4438
-DMRPR	Unknown	Unknown	221
+TRANSPAC_I-int	LTR	Gypsy	28474
+TRANSPAC_LTR	LTR	Gypsy	1457
+XDMR	Unknown	Unknown	1771
+XDMR_DM	Unknown	Unknown	4049
+ZAM_I-int	LTR	Gypsy	6896
+ZAM_LTR	LTR	Gypsy	377