Mercurial > repos > artbio > repenrich

diff repenrich.xml @ 1:51b4590a972d draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit 98f4b00d71cbc2dd15fc633a6cc3246235308e46
author artbio
date Mon, 18 Sep 2017 17:22:07 -0400
parents f6f0f1e5e940
children 15e3e29f310e
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--- a/repenrich.xml	Wed Aug 02 05:17:29 2017 -0400
+++ b/repenrich.xml	Mon Sep 18 17:22:07 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="repenrich" name="RepEnrich" version="1.4.0">
+<tool id="repenrich" name="RepEnrich" version="1.4.1">
     <description>Repeat Element Profiling</description>
     <requirements>
         <requirement type="package" version="1.2.0">bowtie</requirement>
@@ -163,7 +163,11 @@
  
 **Outputs**
 
-(1) Fraction counts, (2) Family fraction counts and (3) Class fraction counts are returned in tabular format, for further statistical tests differential expression analysis or graphics 
+(1) Fraction counts, (2) Family fraction counts and (3) Class fraction counts are returned in tabular format,
+for further statistical tests differential expression analysis or graphics.
+
+The "aligned_reads.tab" output file contains a single value corresponding to the number of reads that were aligned to
+transposons. This value is used in downstream analysis by the edger-repenrich tool.
 
 **RepEnrich**