Mercurial > repos > artbio > repenrich

diff RepEnrich_setup.py @ 11:6bba3e33c2e7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 11df9f0b68d35d3a9424a17e4cefee6cfb9d4c19
author artbio
date Sat, 09 Mar 2024 22:32:46 +0000
parents f6f0f1e5e940
children 89e05f831259
line wrap: on
line diff
--- a/RepEnrich_setup.py	Tue Feb 05 17:20:55 2019 -0500
+++ b/RepEnrich_setup.py	Sat Mar 09 22:32:46 2024 +0000
@@ -7,7 +7,6 @@
 import sys
 
 from Bio import SeqIO
-from Bio.Alphabet import IUPAC
 from Bio.Seq import Seq
 from Bio.SeqRecord import SeqRecord
 
@@ -242,7 +241,7 @@
             print("Unrecognised Chromosome: "+chr)
             pass
     # Convert metagenome to SeqRecord object (required by SeqIO.write)
-    record = SeqRecord(Seq(metagenome, IUPAC.unambiguous_dna), id="repname",
+    record = SeqRecord(Seq(metagenome), id="repname",
                        name="", description="")
     print("saving repgenome " + newname + ".fa" + " (" + str(k) + " of "
           + str(nrepgenomes) + ")")