Mercurial > repos > artbio > repenrich
diff RepEnrich_setup.py @ 11:6bba3e33c2e7 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 11df9f0b68d35d3a9424a17e4cefee6cfb9d4c19
author | artbio |
---|---|
date | Sat, 09 Mar 2024 22:32:46 +0000 |
parents | f6f0f1e5e940 |
children | 89e05f831259 |
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--- a/RepEnrich_setup.py Tue Feb 05 17:20:55 2019 -0500 +++ b/RepEnrich_setup.py Sat Mar 09 22:32:46 2024 +0000 @@ -7,7 +7,6 @@ import sys from Bio import SeqIO -from Bio.Alphabet import IUPAC from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord @@ -242,7 +241,7 @@ print("Unrecognised Chromosome: "+chr) pass # Convert metagenome to SeqRecord object (required by SeqIO.write) - record = SeqRecord(Seq(metagenome, IUPAC.unambiguous_dna), id="repname", + record = SeqRecord(Seq(metagenome), id="repname", name="", description="") print("saving repgenome " + newname + ".fa" + " (" + str(k) + " of " + str(nrepgenomes) + ")")