Mercurial > repos > artbio > repenrich
view test-data/edgeR_result_file.tab @ 11:6bba3e33c2e7 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 11df9f0b68d35d3a9424a17e4cefee6cfb9d4c19
| author | artbio |
|---|---|
| date | Sat, 09 Mar 2024 22:32:46 +0000 |
| parents | 15e3e29f310e |
| children | 530626b0757c |
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TE_item log2FC FDR Class Type DM297_I-int 2.69047105 4.4945e-21 LTR Gypsy DM297_LTR 1.74961921 1.3397e-18 LTR Gypsy Gypsy1-I_DM 2.37388633 4.4803e-16 LTR Gypsy NOF_FB -2.79644759 4.4803e-16 DNA MULE-NOF G7_DM 3.25987375 1.5530e-15 LINE Jockey Gypsy_I-int 1.74702180 4.3525e-12 LTR Gypsy LINEJ1_DM 1.94429218 5.1807e-12 LINE Jockey TOM_I-int 1.33935222 6.6923e-12 LTR Gypsy GTWIN_LTR 1.89490932 8.8059e-12 LTR Gypsy Gypsy_LTR 1.56024436 2.9985e-11 LTR Gypsy DM1731_I-int 1.53134430 6.4921e-10 LTR Copia Gypsy6_LTR 1.53023046 1.0751e-06 LTR Gypsy LOOPER1_DM -2.46983670 1.6192e-06 DNA PiggyBac TIRANT_LTR 1.12203469 1.7801e-06 LTR Gypsy Gypsy12_I-int -1.12204057 2.1949e-06 LTR Gypsy R2_DM 1.67889583 2.7304e-06 LINE R2 TRANSPAC_LTR 1.49364968 2.9021e-06 LTR Gypsy Copia_LTR 1.66649088 1.1860e-05 LTR Copia ACCORD_LTR 1.37240595 1.7595e-05 LTR Gypsy TIRANT_I-int 1.17728139 2.0469e-05 LTR Gypsy TART_B1 -1.14695346 3.0966e-05 LINE Jockey TRANSIB1 -1.39021194 6.1650e-05 DNA CMC-Transib DM412B_LTR 0.80309005 1.2443e-04 LTR Gypsy MICROPIA_LTR -1.29556276 1.2985e-04 LTR Gypsy G6_DM -1.05894869 1.3831e-04 LINE Jockey NINJA_I-int -0.87426452 1.5554e-04 LTR Pao R1_DM 0.95590515 1.8985e-04 LINE R1 Invader6_LTR -1.18865109 2.1299e-04 LTR Gypsy Copia_I-int 1.93316905 2.2313e-04 LTR Copia BLASTOPIA_LTR 1.34881959 3.6488e-04 LTR Gypsy LSU-rRNA_Hsa 2.61189118 8.0160e-04 rRNA rRNA TRANSPAC_I-int 1.16122218 8.4531e-04 LTR Gypsy G4_DM -0.74970144 9.1437e-04 LINE Jockey SSU-rRNA_Hsa 1.12389968 1.0426e-03 rRNA rRNA DOC5_DM -0.80987287 1.6241e-03 LINE Jockey Invader1_I-int 0.74972783 1.9892e-03 LTR Gypsy TRANSIB4 -1.00230688 2.0605e-03 DNA CMC-Transib MICROPIA_I-int -0.75119303 2.9293e-03 LTR Gypsy PLACW_DM 1.16310826 3.0518e-03 DNA P TABOR_I-int 0.73770219 3.5495e-03 LTR Gypsy I_DM 1.04141382 4.5715e-03 LINE I Gypsy3_I-int 0.58659480 5.3315e-03 LTR Gypsy DOC 0.94015336 5.5212e-03 LINE Jockey Helitron1_DM -5.10401049 6.3658e-03 RC Helitron Invader5_I-int -0.97342264 6.6603e-03 LTR Gypsy ACCORD_I-int 0.59304769 7.0136e-03 LTR Gypsy LSU-rRNA_Dme 0.90220479 1.0210e-02 rRNA rRNA DM412 0.77597081 1.0808e-02 LTR Gypsy NINJA_LTR -0.92340817 1.0956e-02 LTR Pao BATUMI_I-int -0.56286761 1.4855e-02 LTR Pao DMRT1C -0.66474417 1.7456e-02 LINE R1 TAHRE -0.50950303 1.9854e-02 LINE Jockey Gypsy8_I-int -0.57827690 2.4898e-02 LTR Gypsy BLASTOPIA_I-int 0.79698775 3.0182e-02 LTR Gypsy DM176_LTR -0.69138467 4.3254e-02 LTR Gypsy DMRT1A -0.50960841 4.3254e-02 LINE R1 Gypsy11_I-int -0.73463462 4.3254e-02 LTR Gypsy QUASIMODO2-I_DM 0.47005794 4.4414e-02 LTR Gypsy MuDR-1_DEl 1.35524443 5.3232e-02 DNA MULE-NOF DM1731_LTR 0.75223818 5.4013e-02 LTR Copia FROGGER_I-int -0.60531971 5.4013e-02 LTR Copia MAX_I-int -0.51645609 6.4340e-02 LTR Pao BURDOCK_I-int 0.41822333 6.9121e-02 LTR Gypsy FROGGER_LTR 0.88832640 7.0636e-02 LTR Copia DIVER_I-int 0.57905223 7.3816e-02 LTR Pao Chouto_I-int -0.55102999 8.1512e-02 LTR Gypsy DM176_I-int 0.38700877 9.1864e-02 LTR Gypsy Invader4_I-int 0.53274705 9.4896e-02 LTR Gypsy G3_DM -0.60764816 1.0316e-01 LINE Jockey Gypsy4_LTR 0.67676363 1.0531e-01 LTR Gypsy BATUMI_LTR -0.62559888 1.1233e-01 LTR Pao Gypsy2-I_DM 0.41886069 1.2754e-01 LTR Gypsy Invader3_LTR -0.55372613 1.3023e-01 LTR Gypsy MDG3_I-int 0.41719543 1.3084e-01 LTR Gypsy SSU-rRNA_Dme 0.50182621 1.3084e-01 rRNA rRNA G5A_DM -0.46837522 1.4239e-01 LINE Jockey S2_DM -0.57644415 1.5438e-01 DNA TcMar-Tc1 Stalker2_I-int -0.42481708 1.5792e-01 LTR Gypsy BLOOD_LTR 0.49499975 1.5864e-01 LTR Gypsy Invader5_LTR -0.67598409 1.5864e-01 LTR Gypsy R1-2_DM -0.61185323 1.5864e-01 LINE R1 Transib5 -0.51646991 1.5864e-01 DNA CMC-Transib TLD2 -1.24823549 1.5867e-01 LTR Gypsy TC1_DM 0.40057291 1.6763e-01 DNA TcMar-Tc1 BS2 -0.33138649 1.8548e-01 LINE Jockey ROVER-LTR_DM -0.52968179 1.8874e-01 LTR Gypsy ACCORD2_I-int -0.35057261 1.9179e-01 LTR Gypsy Gypsy12A_LTR -0.35446551 2.0443e-01 LTR Gypsy FW3_DM -0.47634256 2.1692e-01 LINE Jockey ROO_LTR 0.40023254 2.4447e-01 LTR Pao STALKER4_LTR 0.38334943 2.4826e-01 LTR Gypsy POGON1 0.48250711 2.5578e-01 DNA TcMar-Pogo HOBO -0.28322082 2.7317e-01 DNA hAT-hobo BS3_DM -0.41804161 2.7791e-01 LINE Jockey Gypsy9_I-int -0.43733630 2.8095e-01 LTR Gypsy P-1_DY 0.96941787 2.8095e-01 DNA P Bica_I-int -0.36315185 2.8762e-01 LTR Gypsy DMCR1A -0.34210888 3.2054e-01 LINE CR1 Mariner2_DM -0.42211425 3.2054e-01 DNA TcMar-Tc1 Gypsy7_LTR -0.48494039 3.2266e-01 LTR Gypsy TRANSIB3 0.34423215 3.2266e-01 DNA CMC-Transib DMRPR 0.47467109 3.6960e-01 Unknown Unknown DIVER2_LTR -0.38136207 3.8446e-01 LTR Pao Gypsy1-LTR_DM 0.34154788 3.8486e-01 LTR Gypsy DOC4_DM 0.36211424 3.8941e-01 LINE Jockey SSU-rRNA_Cel 0.26869336 3.8941e-01 rRNA rRNA ZAM_I-int 0.25296287 3.9720e-01 LTR Gypsy XDMR_DM -0.25621121 4.0891e-01 Unknown Unknown Chimpo_LTR -0.46051522 4.0932e-01 LTR Gypsy 5S_DM -0.36064469 4.1204e-01 RNA RNA BLOOD_I-int 0.30119351 4.1204e-01 LTR Gypsy CIRCE -0.21220099 4.1204e-01 LTR Gypsy DOC2_DM -0.21921882 4.1204e-01 LINE Jockey HELENA_RT 0.30671686 4.1204e-01 LINE Jockey HETA -0.29869287 4.1204e-01 LINE Jockey Invader2_LTR -0.34945118 4.1204e-01 LTR Gypsy PROTOP -0.21894181 4.1204e-01 DNA P ACCORD2_LTR -0.37387744 4.1532e-01 LTR Gypsy BARI1 -0.36182547 4.3906e-01 DNA TcMar-Tc1 Copia2_I-int -0.19965127 4.5402e-01 LTR Copia Chouto_LTR -0.42256719 4.5763e-01 LTR Gypsy S_DM 0.19327510 4.6659e-01 DNA TcMar-Tc1 Chimpo_I-int -0.31980269 4.6967e-01 LTR Gypsy Gypsy2_LTR 0.33740593 4.6967e-01 LTR Gypsy Gypsy6_I-int 0.24488785 4.6967e-01 LTR Gypsy NOMAD_LTR -0.31070751 4.6967e-01 LTR Gypsy DIVER2_I-int -0.21740035 4.8214e-01 LTR Pao DOC3_DM -0.22674831 4.9564e-01 LINE Jockey XDMR 0.24963373 5.0355e-01 Unknown Unknown ROO_I-int 0.27660875 5.0509e-01 LTR Pao BURDOCK_LTR 0.32676718 5.1078e-01 LTR Gypsy BEL_I-int 0.23736249 5.3379e-01 LTR Pao Invader6_I-int -0.20526694 5.3379e-01 LTR Gypsy ROOA_I-int -0.19423348 5.3379e-01 LTR Pao DIVER_LTR 0.27103098 5.3662e-01 LTR Pao DOC6_DM 0.22207941 5.3662e-01 LINE Jockey GTWIN_I-int 0.19380839 5.3662e-01 LTR Gypsy MAX_LTR -0.25774945 5.4015e-01 LTR Pao Gypsy10_I-int -0.18883467 5.6847e-01 LTR Gypsy Gypsy11_LTR -0.30451990 5.6847e-01 LTR Gypsy Transib-N1_DM -0.28535954 5.6847e-01 DNA CMC-Transib Gypsy8_LTR -0.22930841 5.7216e-01 LTR Gypsy MDG1_LTR -0.22227823 5.9833e-01 LTR Gypsy ARS406_DM -0.25396979 6.1631e-01 Unknown Unknown TRANSIB2 -0.14622244 6.2541e-01 DNA CMC-Transib Invader3_I-int -0.13800579 6.3087e-01 LTR Gypsy FW2_DM 0.18134923 6.3198e-01 LINE Jockey Gypsy9_LTR -0.34138672 6.3739e-01 LTR Gypsy PROTOP_A 0.12947002 6.4158e-01 DNA P TART-A 0.13700066 6.4158e-01 LINE Jockey Invader2_I-int -0.15122431 6.5337e-01 LTR Gypsy MDG3_LTR -0.18866858 6.5337e-01 LTR Gypsy Jockey2 -0.16295961 6.5457e-01 LINE Jockey POGO -0.15072772 6.5549e-01 DNA TcMar-Pogo Baggins1 -0.13482610 6.9317e-01 LINE LOA Bica_LTR -0.20302797 7.0764e-01 LTR Gypsy HMSBEAGLE_I-int 0.13884460 7.0764e-01 LTR Gypsy Stalker3_LTR -0.17401807 7.0764e-01 LTR Gypsy NTS_DM -0.17655207 7.1269e-01 Other Other TABOR_LTR -0.24324332 7.1269e-01 LTR Gypsy ZAM_LTR 0.18588916 7.1788e-01 LTR Gypsy G5_DM -0.11225655 7.2833e-01 LINE Jockey BEL_LTR 0.15254286 7.5643e-01 LTR Pao FB4_DM -0.11461634 7.5643e-01 DNA TcMar-Tc1 Invader1_LTR 0.14121996 7.5643e-01 LTR Gypsy QUASIMODO_I-int 0.12627126 7.5643e-01 LTR Gypsy DMRT1B -0.11123522 7.6005e-01 LINE R1 NOMAD_I-int -0.13754670 7.6005e-01 LTR Gypsy LmeSINE1c -0.22854353 7.6030e-01 SINE tRNA-Deu-L2 Copia2_LTR_DM 0.14797919 7.6240e-01 LTR Copia Gypsy10_LTR -0.15465107 7.6240e-01 LTR Gypsy QUASIMODO2-LTR_DM -0.15543048 7.6240e-01 LTR Gypsy BS4_DM -0.25325163 8.1092e-01 LINE Jockey G_DM 0.09027859 8.1092e-01 LINE Jockey IVK_DM -0.08072118 8.1871e-01 LINE I Gypsy12_LTR -0.08320455 8.3527e-01 LTR Gypsy Gypsy5_I-int -0.07748073 8.3527e-01 LTR Gypsy Gypsy6A_LTR -0.11623997 8.3527e-01 LTR Gypsy IDEFIX_I-int 0.07819724 8.3527e-01 LTR Gypsy DMRP1 0.10050452 8.4631e-01 Unknown Unknown PROTOP_B -0.07455018 8.4631e-01 DNA P Copia1-LTR_DM -0.09617523 8.5055e-01 LTR Copia TC1-2_DM 0.05957200 8.5307e-01 DNA TcMar-Tc1 Gypsy7_I-int 0.08264110 8.6134e-01 LTR Gypsy LSU-rRNA_Cel -0.09208250 8.6134e-01 rRNA rRNA DMLTR5 0.07268948 9.0549e-01 LTR Gypsy Gypsy2-LTR_DM 0.06521928 9.0549e-01 LTR Gypsy Gypsy4_I-int -0.05162740 9.0549e-01 LTR Gypsy Gypsy5_LTR -0.07109800 9.0549e-01 LTR Gypsy QUASIMODO_LTR -0.06434677 9.0549e-01 LTR Gypsy Stalker2_LTR -0.05232101 9.1731e-01 LTR Gypsy ROVER-I_DM -0.04081108 9.2272e-01 LTR Gypsy MDG1_I-int -0.04114242 9.3745e-01 LTR Gypsy ALA_DM -0.11425480 9.4292e-01 Unknown Unknown DNAREP1_DM 0.03935403 9.4292e-01 RC Helitron BARI_DM 0.03727161 9.4985e-01 DNA TcMar-Tc1 Gypsy2_I-int -0.02615993 9.5197e-01 LTR Gypsy DMTOM1_LTR 0.03496404 9.5383e-01 LTR Gypsy Gypsy3_LTR -0.02988832 9.5772e-01 LTR Gypsy IDEFIX_LTR 0.02199611 9.5772e-01 LTR Gypsy MINOS 0.03304798 9.5772e-01 DNA TcMar-Tc1 STALKER4_I-int 0.02412753 9.5772e-01 LTR Gypsy G2_DM 0.02260980 9.6224e-01 LINE Jockey Copia1-I_DM 0.01242368 9.6305e-01 LTR Copia Invader4_LTR 0.01649543 9.6305e-01 LTR Gypsy M4DM -0.01736598 9.6305e-01 DNA CMC-Transib BS 0.00565217 9.9786e-01 LINE Jockey FTZ_DM 0.00000000 1.0000e+00 Unknown Unknown FUSHI_DM 0.00000000 1.0000e+00 Unknown Unknown ROOA_LTR -0.00054251 1.0000e+00 LTR Pao