Mercurial > repos > artbio > repenrich
changeset 10:6f4143893463 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit e3881f05134c6f50889d0376d27e1c232251f8b3
| author | artbio |
|---|---|
| date | Tue, 05 Feb 2019 17:20:55 -0500 |
| parents | db32bb7bda01 |
| children | 6bba3e33c2e7 |
| files | RepEnrich.py edger-repenrich.xml repenrich.xml |
| diffstat | 3 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/RepEnrich.py Tue Dec 11 12:50:46 2018 -0500 +++ b/RepEnrich.py Tue Feb 05 17:20:55 2019 -0500 @@ -400,8 +400,8 @@ repcounts = {} repcounts['other'] = 0 for key in counts.keys(): - convert(key) - repcounts[repname] = counts[key] + convert(key) + repcounts[repname] = counts[key] # building the total counts for class enrichment... for key in reptotalcounts.keys(): classtotalcounts[repeatclass[key]] += reptotalcounts[key]
--- a/edger-repenrich.xml Tue Dec 11 12:50:46 2018 -0500 +++ b/edger-repenrich.xml Tue Feb 05 17:20:55 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.3"> +<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.2"> <description>Determines differentially expressed features from RepEnrich counts</description> <requirements> <requirement type="package" version="3.16.5">bioconductor-edger</requirement>
--- a/repenrich.xml Tue Dec 11 12:50:46 2018 -0500 +++ b/repenrich.xml Tue Feb 05 17:20:55 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="repenrich" name="RepEnrich" version="1.6.0"> +<tool id="repenrich" name="RepEnrich" version="1.6.1"> <description>Repeat Element Profiling</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement>