comparison RepEnrich2.py @ 6:388a47ca4199 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit a9af1284d644055565b6cf3401569694218ab8e9

5:08e50af788f7

    familyfractionalcounts[repeat_ref[key]['family']] += value

# print class-, family- and fraction-repeats counts to files
with open("class_fraction_counts.tsv", 'w') as fout:
    for key in sorted(classfractionalcounts):
        fout.write(f"{key}\t{classfractionalcounts[key]}\n")

with open("family_fraction_counts.tsv", 'w') as fout:
    for key in sorted(familyfractionalcounts):
        fout.write(f"{key}\t{familyfractionalcounts[key]}\n")

with open("fraction_counts.tsv", 'w') as fout:
    for key in sorted(fractionalcounts):
        fout.write(f"{key}\t{repeat_ref[key]['class']}\t"
                   f"{repeat_ref[key]['family']}\t"
                   f"{fractionalcounts[key]}\n")

6:388a47ca4199

    familyfractionalcounts[repeat_ref[key]['family']] += value

# print class-, family- and fraction-repeats counts to files
with open("class_fraction_counts.tsv", 'w') as fout:
    for key in sorted(classfractionalcounts):
        fout.write(f"{key}\t{round(classfractionalcounts[key], 2)}\n")

with open("family_fraction_counts.tsv", 'w') as fout:
    for key in sorted(familyfractionalcounts):
        fout.write(f"{key}\t{round(familyfractionalcounts[key], 2)}\n")

with open("fraction_counts.tsv", 'w') as fout:
    for key in sorted(fractionalcounts):
        fout.write(f"{key}\t{repeat_ref[key]['class']}\t"
                   f"{repeat_ref[key]['family']}\t"
                   f"{round(fractionalcounts[key], 2)}\n")