Mercurial > repos > artbio > repenrich2

comparison test-data/chrY_paired_fraction_counts.tab @ 8:567549a49eb2 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit b3b166a8e991f49227e4888b8065b57cec0ba949
author artbio
date Thu, 25 Apr 2024 09:06:48 +0000
parents 388a47ca4199
children 2b61c6407efb
comparison
equal deleted inserted replaced
7:61e0404f0d76 8:567549a49eb2
1 A-rich Low_complexity Low_complexity 4.24 1 A-rich Low_complexity Low_complexity 0.0
2 ACCORD2_I-int LTR Gypsy 4.24 2 ACCORD2_I-int LTR Gypsy 0.0
3 ACCORD2_LTR LTR Gypsy 4.24 3 ACCORD2_LTR LTR Gypsy 0.0
4 ACCORD_I-int LTR Gypsy 4.24 4 ACCORD_I-int LTR Gypsy 0.0
5 BARI1 DNA TcMar-Tc1 4.24 5 BARI1 DNA TcMar-Tc1 0.0
6 BATUMI_LTR LTR Pao 4.24 6 BATUMI_LTR LTR Pao 0.0
7 BS LINE Jockey 4.24 7 BS LINE Jockey 0.0
8 BS2 LINE Jockey 62.24 8 BS2 LINE Jockey 58.0
9 BURDOCK_I-int LTR Gypsy 4.24 9 BURDOCK_I-int LTR Gypsy 0.0
10 Baggins1 LINE LOA 4.24 10 Baggins1 LINE LOA 0.0
11 Bica_I-int LTR Gypsy 42.24 11 Bica_I-int LTR Gypsy 49.0
12 Bica_LTR LTR Gypsy 4.24 12 Bica_LTR LTR Gypsy 1.0
13 CIRCE LTR Gypsy 4.24 13 CIRCE LTR Gypsy 0.0
14 Chouto_I-int LTR Gypsy 4.24 14 Chouto_I-int LTR Gypsy 1.5
15 Copia1-I_DM LTR Copia 4.24 15 Copia1-I_DM LTR Copia 0.0
16 Copia_I-int LTR Copia 25185.24 16 Copia_I-int LTR Copia 25220.0
17 Copia_LTR LTR Copia 651.24 17 Copia_LTR LTR Copia 652.0
18 DIVER2_I-int LTR Pao 4.24 18 DIVER2_I-int LTR Pao 1.0
19 DIVER2_LTR LTR Pao 4.24 19 DIVER2_LTR LTR Pao 2.0
20 DM1731_I-int LTR Copia 10.24 20 DM1731_I-int LTR Copia 8.0
21 DM1731_LTR LTR Copia 4.24 21 DM1731_LTR LTR Copia 0.0
22 DM176_I-int LTR Gypsy 4.24 22 DM176_I-int LTR Gypsy 0.0
23 DM412 LTR Gypsy 4.24 23 DM412 LTR Gypsy 12.5
24 DM412B_LTR LTR Gypsy 4.24 24 DM412B_LTR LTR Gypsy 0.0
25 DMCR1A LINE CR1 8.24 25 DMCR1A LINE CR1 4.0
26 DMLTR5 LTR Gypsy 4.24 26 DMLTR5 LTR Gypsy 0.0
27 DMRT1A LINE R1 4.24 27 DMRT1A LINE R1 0.0
28 DMRT1B LINE R1 90.24 28 DMRT1B LINE R1 116.0
29 DMRT1C LINE R1 4.24 29 DMRT1C LINE R1 0.0
30 DNAREP1_DM RC Helitron 4.24 30 DNAREP1_DM RC Helitron 0.0
31 DOC2_DM LINE Jockey 4.24 31 DOC2_DM LINE Jockey 0.0
32 DOC3_DM LINE Jockey 4.24 32 DOC3_DM LINE Jockey 0.0
33 FB4_DM DNA TcMar-Tc1 42.24 33 FB4_DM DNA TcMar-Tc1 41.0
34 FROGGER_I-int LTR Copia 4.24 34 FROGGER_I-int LTR Copia 0.0
35 FW2_DM LINE Jockey 4.24 35 FW2_DM LINE Jockey 0.0
36 G3_DM LINE Jockey 4.24 36 G3_DM LINE Jockey 0.0
37 G5A_DM LINE Jockey 4.24 37 G5A_DM LINE Jockey 0.0
38 G5_DM LINE Jockey 4.24 38 G5_DM LINE Jockey 0.0
39 G6_DM LINE Jockey 4.24 39 G6_DM LINE Jockey 0.0
40 GA-rich Low_complexity Low_complexity 4.24 40 GA-rich Low_complexity Low_complexity 0.67
41 GTWIN_I-int LTR Gypsy 4.24 41 GTWIN_I-int LTR Gypsy 12.5
42 G_DM LINE Jockey 4.24 42 G_DM LINE Jockey 0.0
43 Gypsy11_I-int LTR Gypsy 4.24 43 Gypsy11_I-int LTR Gypsy 0.0
44 Gypsy11_LTR LTR Gypsy 4.24 44 Gypsy11_LTR LTR Gypsy 0.0
45 Gypsy12_LTR LTR Gypsy 4.24 45 Gypsy12_LTR LTR Gypsy 0.0
46 Gypsy2-I_DM LTR Gypsy 6.24 46 Gypsy2-I_DM LTR Gypsy 4.0
47 Gypsy2-LTR_DM LTR Gypsy 4.24 47 Gypsy2-LTR_DM LTR Gypsy 0.0
48 Gypsy3_LTR LTR Gypsy 4.24 48 Gypsy3_LTR LTR Gypsy 0.0
49 Gypsy4_I-int LTR Gypsy 4.24 49 Gypsy4_I-int LTR Gypsy 0.0
50 Gypsy5_I-int LTR Gypsy 4.24 50 Gypsy5_I-int LTR Gypsy 0.0
51 Gypsy6A_LTR LTR Gypsy 4.24 51 Gypsy6A_LTR LTR Gypsy 1.0
52 Gypsy6_I-int LTR Gypsy 30.24 52 Gypsy6_I-int LTR Gypsy 31.0
53 Gypsy8_I-int LTR Gypsy 4.24 53 Gypsy8_I-int LTR Gypsy 0.0
54 Gypsy8_LTR LTR Gypsy 4.24 54 Gypsy8_LTR LTR Gypsy 0.0
55 Gypsy9_I-int LTR Gypsy 4.24 55 Gypsy9_I-int LTR Gypsy 0.0
56 Gypsy_I-int LTR Gypsy 36.24 56 Gypsy_I-int LTR Gypsy 32.0
57 Gypsy_LTR LTR Gypsy 5.24 57 Gypsy_LTR LTR Gypsy 1.0
58 HELENA_RT LINE Jockey 4.24 58 HELENA_RT LINE Jockey 0.0
59 HETA LINE Jockey 28.24 59 HETA LINE Jockey 24.0
60 HMSBEAGLE_I-int LTR Gypsy 6.24 60 HMSBEAGLE_I-int LTR Gypsy 2.0
61 IDEFIX_I-int LTR Gypsy 8.24 61 IDEFIX_I-int LTR Gypsy 8.0
62 IDEFIX_LTR LTR Gypsy 4.24 62 IDEFIX_LTR LTR Gypsy 2.0
63 Invader1_I-int LTR Gypsy 4.24 63 Invader1_I-int LTR Gypsy 0.0
64 Invader1_LTR LTR Gypsy 4.24 64 Invader1_LTR LTR Gypsy 0.0
65 Invader2_I-int LTR Gypsy 4.24 65 Invader2_I-int LTR Gypsy 0.0
66 Invader4_I-int LTR Gypsy 4.24 66 Invader4_I-int LTR Gypsy 0.0
67 Invader4_LTR LTR Gypsy 4.24 67 Invader4_LTR LTR Gypsy 0.0
68 Invader5_I-int LTR Gypsy 4.24 68 Invader5_I-int LTR Gypsy 0.0
69 Invader5_LTR LTR Gypsy 4.24 69 Invader5_LTR LTR Gypsy 0.0
70 Invader6_I-int LTR Gypsy 4.24 70 Invader6_I-int LTR Gypsy 0.0
71 Invader6_LTR LTR Gypsy 4.24 71 Invader6_LTR LTR Gypsy 0.0
72 MAX_I-int LTR Pao 53.24 72 MAX_I-int LTR Pao 56.0
73 MAX_LTR LTR Pao 6.24 73 MAX_LTR LTR Pao 2.0
74 MDG1_I-int LTR Gypsy 4.24 74 MDG1_I-int LTR Gypsy 0.0
75 MDG1_LTR LTR Gypsy 4.24 75 MDG1_LTR LTR Gypsy 0.0
76 MDG3_I-int LTR Gypsy 156.24 76 MDG3_I-int LTR Gypsy 156.5
77 MDG3_LTR LTR Gypsy 4.24 77 MDG3_LTR LTR Gypsy 2.5
78 MICROPIA_I-int LTR Gypsy 4.24 78 MICROPIA_I-int LTR Gypsy 51.0
79 MICROPIA_LTR LTR Gypsy 4.24 79 MICROPIA_LTR LTR Gypsy 2.0
80 Mariner2_DM DNA TcMar-Tc1 4.24 80 Mariner2_DM DNA TcMar-Tc1 0.0
81 NINJA_I-int LTR Pao 4.24 81 NINJA_I-int LTR Pao 0.0
82 NOMAD_I-int LTR Gypsy 4.24 82 NOMAD_I-int LTR Gypsy 0.0
83 PROTOP_A DNA P 36.24 83 PROTOP_A DNA P 50.0
84 PROTOP_B DNA P 4.24 84 PROTOP_B DNA P 10.0
85 QUASIMODO2-I_DM LTR Gypsy 46.24 85 QUASIMODO2-I_DM LTR Gypsy 43.0
86 QUASIMODO2-LTR_DM LTR Gypsy 4.24 86 QUASIMODO2-LTR_DM LTR Gypsy 0.0
87 QUASIMODO_I-int LTR Gypsy 14.24 87 QUASIMODO_I-int LTR Gypsy 108.0
88 QUASIMODO_LTR LTR Gypsy 6.24 88 QUASIMODO_LTR LTR Gypsy 23.0
89 R1_DM LINE R1 4.24 89 R1_DM LINE R1 0.0
90 ROOA_I-int LTR Pao 4.24 90 ROOA_I-int LTR Pao 0.0
91 ROOA_LTR LTR Pao 4.24 91 ROOA_LTR LTR Pao 0.0
92 ROVER-I_DM LTR Gypsy 385.24 92 ROVER-I_DM LTR Gypsy 414.0
93 ROVER-LTR_DM LTR Gypsy 6.24 93 ROVER-LTR_DM LTR Gypsy 6.0
94 S2_DM DNA TcMar-Tc1 4.24 94 S2_DM DNA TcMar-Tc1 0.0
95 STALKER4_I-int LTR Gypsy 81.24 95 STALKER4_I-int LTR Gypsy 143.5
96 STALKER4_LTR LTR Gypsy 8.24 96 STALKER4_LTR LTR Gypsy 25.0
97 S_DM DNA TcMar-Tc1 52.24 97 S_DM DNA TcMar-Tc1 53.0
98 Stalker2_I-int LTR Gypsy 84.24 98 Stalker2_I-int LTR Gypsy 103.0
99 Stalker2_LTR LTR Gypsy 6.24 99 Stalker2_LTR LTR Gypsy 3.0
100 TART-A LINE Jockey 8.24 100 TART-A LINE Jockey 4.0
101 TART_B1 LINE Jockey 23.24 101 TART_B1 LINE Jockey 21.0
102 TC1-2_DM DNA TcMar-Tc1 4.24 102 TC1-2_DM DNA TcMar-Tc1 0.0
103 TC1_DM DNA TcMar-Tc1 4.24 103 TC1_DM DNA TcMar-Tc1 0.0
104 TLD2 LTR Gypsy 4.24 104 TLD2 LTR Gypsy 0.0
105 TRANSIB1 DNA CMC-Transib 4.24 105 TRANSIB1 DNA CMC-Transib 0.0
106 TRANSIB2 DNA CMC-Transib 34.24 106 TRANSIB2 DNA CMC-Transib 30.0
107 ZAM_I-int LTR Gypsy 4.24 107 ZAM_I-int LTR Gypsy 0.0
108 _AACACA_n Simple_repeat Simple_repeat 4.24 108 _AACACA_n Simple_repeat Simple_repeat 0.0
109 _AAT_n Simple_repeat Simple_repeat 4.24 109 _AAT_n Simple_repeat Simple_repeat 0.0
110 _ACAATAG_n Simple_repeat Simple_repeat 4.24 110 _ACAATAG_n Simple_repeat Simple_repeat 0.0
111 _ACC_n Simple_repeat Simple_repeat 4.24 111 _ACC_n Simple_repeat Simple_repeat 0.0
112 _AGAGAAG_n Simple_repeat Simple_repeat 4.24 112 _AGAGAAG_n Simple_repeat Simple_repeat 2.17
113 _AGAGA_n Simple_repeat Simple_repeat 4.24 113 _AGAGA_n Simple_repeat Simple_repeat 43.0
114 _ATAAT_n Simple_repeat Simple_repeat 4.24 114 _ATAAT_n Simple_repeat Simple_repeat 0.0
115 _ATATATT_n Simple_repeat Simple_repeat 4.24 115 _ATATATT_n Simple_repeat Simple_repeat 0.0
116 _ATATTAT_n Simple_repeat Simple_repeat 4.24 116 _ATATTAT_n Simple_repeat Simple_repeat 0.0
117 _ATTTTT_n Simple_repeat Simple_repeat 4.24 117 _ATTTTT_n Simple_repeat Simple_repeat 0.0
118 _ATT_n Simple_repeat Simple_repeat 4.24 118 _ATT_n Simple_repeat Simple_repeat 0.0
119 _AT_n Simple_repeat Simple_repeat 4.24 119 _AT_n Simple_repeat Simple_repeat 0.0
120 _A_n Simple_repeat Simple_repeat 4.24 120 _A_n Simple_repeat Simple_repeat 0.0
121 _CATA_n Simple_repeat Simple_repeat 4.24 121 _CATA_n Simple_repeat Simple_repeat 0.0
122 _CTTTT_n Simple_repeat Simple_repeat 4.24 122 _CTTTT_n Simple_repeat Simple_repeat 0.0
123 _GAGAA_n Simple_repeat Simple_repeat 4.24 123 _GAGAA_n Simple_repeat Simple_repeat 45.17
124 _GCCTTT_n Simple_repeat Simple_repeat 4.24 124 _GCCTTT_n Simple_repeat Simple_repeat 0.0
125 _TAATAT_n Simple_repeat Simple_repeat 4.24 125 _TAATAT_n Simple_repeat Simple_repeat 0.0
126 _TAATA_n Simple_repeat Simple_repeat 4.24 126 _TAATA_n Simple_repeat Simple_repeat 0.0
127 _TATAAAA_n Simple_repeat Simple_repeat 4.24 127 _TATAAAA_n Simple_repeat Simple_repeat 0.0
128 _TATAA_n Simple_repeat Simple_repeat 4.24 128 _TATAA_n Simple_repeat Simple_repeat 0.0
129 _TATCATG_n Simple_repeat Simple_repeat 4.24 129 _TATCATG_n Simple_repeat Simple_repeat 0.0
130 _TA_n Simple_repeat Simple_repeat 4.24 130 _TA_n Simple_repeat Simple_repeat 0.0
131 _TGTTG_n Simple_repeat Simple_repeat 4.24 131 _TGTTG_n Simple_repeat Simple_repeat 0.0
132 _TTATATA_n Simple_repeat Simple_repeat 4.24 132 _TTATATA_n Simple_repeat Simple_repeat 0.0
133 _TTATAT_n Simple_repeat Simple_repeat 4.24 133 _TTATAT_n Simple_repeat Simple_repeat 0.0
134 _TTATA_n Simple_repeat Simple_repeat 4.24 134 _TTATA_n Simple_repeat Simple_repeat 0.0
135 _TTA_n Simple_repeat Simple_repeat 4.24 135 _TTA_n Simple_repeat Simple_repeat 0.0
136 _TTCTT_n Simple_repeat Simple_repeat 4.24 136 _TTCTT_n Simple_repeat Simple_repeat 0.0
137 _TTC_n Simple_repeat Simple_repeat 4.24 137 _TTC_n Simple_repeat Simple_repeat 0.0
138 _TTTAT_n Simple_repeat Simple_repeat 4.24 138 _TTTAT_n Simple_repeat Simple_repeat 0.0
139 _TTTA_n Simple_repeat Simple_repeat 4.24 139 _TTTA_n Simple_repeat Simple_repeat 0.0
140 _TTTC_n Simple_repeat Simple_repeat 4.24 140 _TTTC_n Simple_repeat Simple_repeat 0.0
141 _TTTGA_n Simple_repeat Simple_repeat 4.24 141 _TTTGA_n Simple_repeat Simple_repeat 0.0
142 _TTTTAG_n Simple_repeat Simple_repeat 4.24 142 _TTTTAG_n Simple_repeat Simple_repeat 0.0
143 _TTTTCTT_n Simple_repeat Simple_repeat 4.24 143 _TTTTCTT_n Simple_repeat Simple_repeat 0.0
144 _TTTTC_n Simple_repeat Simple_repeat 4.24 144 _TTTTC_n Simple_repeat Simple_repeat 0.0
145 _T_n Simple_repeat Simple_repeat 4.24 145 _T_n Simple_repeat Simple_repeat 0.0