Mercurial > repos > artbio > repenrich2

diff test-data/355_fraction_counts.tab @ 0:4905a332a094 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit 73721d980c1f422dc880d80f61e44d270992e537
author artbio
date Sat, 20 Apr 2024 11:56:53 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/355_fraction_counts.tab	Sat Apr 20 11:56:53 2024 +0000
@@ -0,0 +1,210 @@
+5S_DM	RNA	RNA	4146
+ACCORD_I-int	LTR	Gypsy	2031
+ACCORD_LTR	LTR	Gypsy	344
+ACCORD2_I-int	LTR	Gypsy	1200
+ACCORD2_LTR	LTR	Gypsy	76
+ALA_DM	Unknown	Unknown	0
+ARS406_DM	Unknown	Unknown	230
+Baggins1	LINE	LOA	1832
+BARI_DM	DNA	TcMar-Tc1	522
+BARI1	DNA	TcMar-Tc1	125
+BATUMI_I-int	LTR	Pao	1842
+BATUMI_LTR	LTR	Pao	169
+BEL_I-int	LTR	Pao	15192
+BEL_LTR	LTR	Pao	605
+Bica_I-int	LTR	Gypsy	618
+Bica_LTR	LTR	Gypsy	67
+BLASTOPIA_I-int	LTR	Gypsy	12045
+BLASTOPIA_LTR	LTR	Gypsy	919
+BLOOD_I-int	LTR	Gypsy	13280
+BLOOD_LTR	LTR	Gypsy	542
+BS	LINE	Jockey	4135
+BS2	LINE	Jockey	2086
+BS3_DM	LINE	Jockey	453
+BS4_DM	LINE	Jockey	23
+BURDOCK_I-int	LTR	Gypsy	2232
+BURDOCK_LTR	LTR	Gypsy	193
+Chimpo_I-int	LTR	Gypsy	370
+Chimpo_LTR	LTR	Gypsy	33
+Chouto_I-int	LTR	Gypsy	518
+Chouto_LTR	LTR	Gypsy	159
+CIRCE	LTR	Gypsy	1570
+Copia_I-int	LTR	Copia	87220
+Copia_LTR	LTR	Copia	3075
+Copia1-I_DM	LTR	Copia	1946
+Copia1-LTR_DM	LTR	Copia	389
+Copia2_I-int	LTR	Copia	1892
+Copia2_LTR_DM	LTR	Copia	460
+DIVER_I-int	LTR	Pao	11751
+DIVER_LTR	LTR	Pao	328
+DIVER2_I-int	LTR	Pao	2668
+DIVER2_LTR	LTR	Pao	240
+DM1731_I-int	LTR	Copia	6873
+DM1731_LTR	LTR	Copia	321
+DM176_I-int	LTR	Gypsy	2298
+DM176_LTR	LTR	Gypsy	330
+DM297_I-int	LTR	Gypsy	42705
+DM297_LTR	LTR	Gypsy	2516
+DM412	LTR	Gypsy	23508
+DM412B_LTR	LTR	Gypsy	3001
+DMCR1A	LINE	CR1	8072
+DMLTR5	LTR	Gypsy	94
+DMRP1	Unknown	Unknown	144
+DMRPR	Unknown	Unknown	136
+DMRT1A	LINE	R1	1235
+DMRT1B	LINE	R1	4115
+DMRT1C	LINE	R1	670
+DMTOM1_LTR	LTR	Gypsy	458
+DNAREP1_DM	RC	Helitron	36953
+DOC	LINE	Jockey	21700
+DOC2_DM	LINE	Jockey	2052
+DOC3_DM	LINE	Jockey	5205
+DOC4_DM	LINE	Jockey	658
+DOC5_DM	LINE	Jockey	752
+DOC6_DM	LINE	Jockey	768
+FB4_DM	DNA	TcMar-Tc1	3348
+FROGGER_I-int	LTR	Copia	546
+FROGGER_LTR	LTR	Copia	57
+FTZ_DM	Unknown	Unknown	0
+FUSHI_DM	Unknown	Unknown	0
+FW2_DM	LINE	Jockey	8864
+FW3_DM	LINE	Jockey	376
+G_DM	LINE	Jockey	4582
+G2_DM	LINE	Jockey	764
+G3_DM	LINE	Jockey	250
+G4_DM	LINE	Jockey	1225
+G5_DM	LINE	Jockey	1300
+G5A_DM	LINE	Jockey	582
+G6_DM	LINE	Jockey	786
+G7_DM	LINE	Jockey	418
+GTWIN_I-int	LTR	Gypsy	2930
+GTWIN_LTR	LTR	Gypsy	938
+Gypsy_I-int	LTR	Gypsy	11161
+Gypsy_LTR	LTR	Gypsy	1737
+Gypsy1-I_DM	LTR	Gypsy	22753
+Gypsy1-LTR_DM	LTR	Gypsy	576
+Gypsy10_I-int	LTR	Gypsy	927
+Gypsy10_LTR	LTR	Gypsy	162
+Gypsy11_I-int	LTR	Gypsy	168
+Gypsy11_LTR	LTR	Gypsy	48
+Gypsy12_I-int	LTR	Gypsy	2466
+Gypsy12_LTR	LTR	Gypsy	2680
+Gypsy12A_LTR	LTR	Gypsy	1077
+Gypsy2_I-int	LTR	Gypsy	1552
+Gypsy2_LTR	LTR	Gypsy	250
+Gypsy2-I_DM	LTR	Gypsy	2658
+Gypsy2-LTR_DM	LTR	Gypsy	385
+Gypsy3_I-int	LTR	Gypsy	2258
+Gypsy3_LTR	LTR	Gypsy	212
+Gypsy4_I-int	LTR	Gypsy	5348
+Gypsy4_LTR	LTR	Gypsy	218
+Gypsy5_I-int	LTR	Gypsy	1036
+Gypsy5_LTR	LTR	Gypsy	326
+Gypsy6_I-int	LTR	Gypsy	3763
+Gypsy6_LTR	LTR	Gypsy	760
+Gypsy6A_LTR	LTR	Gypsy	219
+Gypsy7_I-int	LTR	Gypsy	742
+Gypsy7_LTR	LTR	Gypsy	39
+Gypsy8_I-int	LTR	Gypsy	1247
+Gypsy8_LTR	LTR	Gypsy	486
+Gypsy9_I-int	LTR	Gypsy	188
+Gypsy9_LTR	LTR	Gypsy	8
+HELENA_RT	LINE	Jockey	416
+Helitron1_DM	RC	Helitron	0
+HETA	LINE	Jockey	10327
+HMSBEAGLE_I-int	LTR	Gypsy	4079
+HOBO	DNA	hAT-hobo	2119
+I_DM	LINE	I	11149
+IDEFIX_I-int	LTR	Gypsy	3286
+IDEFIX_LTR	LTR	Gypsy	1012
+Invader1_I-int	LTR	Gypsy	1768
+Invader1_LTR	LTR	Gypsy	1903
+Invader2_I-int	LTR	Gypsy	3157
+Invader2_LTR	LTR	Gypsy	213
+Invader3_I-int	LTR	Gypsy	2022
+Invader3_LTR	LTR	Gypsy	227
+Invader4_I-int	LTR	Gypsy	1180
+Invader4_LTR	LTR	Gypsy	679
+Invader5_I-int	LTR	Gypsy	117
+Invader5_LTR	LTR	Gypsy	23
+Invader6_I-int	LTR	Gypsy	3298
+Invader6_LTR	LTR	Gypsy	146
+IVK_DM	LINE	I	1769
+Jockey2	LINE	Jockey	760
+LINEJ1_DM	LINE	Jockey	15939
+LmeSINE1c	SINE	tRNA-Deu-L2	653
+LOOPER1_DM	DNA	PiggyBac	31
+LSU-rRNA_Cel	rRNA	rRNA	251671
+LSU-rRNA_Dme	rRNA	rRNA	4126525
+LSU-rRNA_Hsa	rRNA	rRNA	11
+M4DM	DNA	CMC-Transib	918
+Mariner2_DM	DNA	TcMar-Tc1	926
+MAX_I-int	LTR	Pao	3905
+MAX_LTR	LTR	Pao	343
+MDG1_I-int	LTR	Gypsy	8043
+MDG1_LTR	LTR	Gypsy	281
+MDG3_I-int	LTR	Gypsy	3770
+MDG3_LTR	LTR	Gypsy	454
+MICROPIA_I-int	LTR	Gypsy	3327
+MICROPIA_LTR	LTR	Gypsy	149
+MINOS	DNA	TcMar-Tc1	93
+MuDR-1_DEl	DNA	MULE-NOF	4
+NINJA_I-int	LTR	Pao	1146
+NINJA_LTR	LTR	Pao	114
+NOF_FB	DNA	MULE-NOF	63
+NOMAD_I-int	LTR	Gypsy	8154
+NOMAD_LTR	LTR	Gypsy	277
+NTS_DM	Other	Other	21753
+P-1_DY	DNA	P	4
+PLACW_DM	DNA	P	204
+POGO	DNA	TcMar-Pogo	1032
+POGON1	DNA	TcMar-Pogo	256
+PROTOP	DNA	P	2059
+PROTOP_A	DNA	P	1988
+PROTOP_B	DNA	P	4300
+QUASIMODO_I-int	LTR	Gypsy	8000
+QUASIMODO_LTR	LTR	Gypsy	528
+QUASIMODO2-I_DM	LTR	Gypsy	1811
+QUASIMODO2-LTR_DM	LTR	Gypsy	105
+R1_DM	LINE	R1	6019
+R1-2_DM	LINE	R1	68
+R2_DM	LINE	R2	15128
+ROO_I-int	LTR	Pao	22941
+ROO_LTR	LTR	Pao	1453
+ROOA_I-int	LTR	Pao	2579
+ROOA_LTR	LTR	Pao	276
+ROVER-I_DM	LTR	Gypsy	3069
+ROVER-LTR_DM	LTR	Gypsy	168
+S_DM	DNA	TcMar-Tc1	2041
+S2_DM	DNA	TcMar-Tc1	205
+SSU-rRNA_Cel	rRNA	rRNA	1817
+SSU-rRNA_Dme	rRNA	rRNA	3822
+SSU-rRNA_Hsa	rRNA	rRNA	301813
+Stalker2_I-int	LTR	Gypsy	4814
+Stalker2_LTR	LTR	Gypsy	356
+Stalker3_LTR	LTR	Gypsy	235
+STALKER4_I-int	LTR	Gypsy	3132
+STALKER4_LTR	LTR	Gypsy	803
+TABOR_I-int	LTR	Gypsy	3691
+TABOR_LTR	LTR	Gypsy	88
+TAHRE	LINE	Jockey	1417
+TART_B1	LINE	Jockey	5089
+TART-A	LINE	Jockey	1825
+TC1_DM	DNA	TcMar-Tc1	1485
+TC1-2_DM	DNA	TcMar-Tc1	2287
+TIRANT_I-int	LTR	Gypsy	12728
+TIRANT_LTR	LTR	Gypsy	1596
+TLD2	LTR	Gypsy	1
+TOM_I-int	LTR	Gypsy	3390
+Transib-N1_DM	DNA	CMC-Transib	130
+TRANSIB1	DNA	CMC-Transib	289
+TRANSIB2	DNA	CMC-Transib	1484
+TRANSIB3	DNA	CMC-Transib	741
+TRANSIB4	DNA	CMC-Transib	153
+Transib5	DNA	CMC-Transib	328
+TRANSPAC_I-int	LTR	Gypsy	16760
+TRANSPAC_LTR	LTR	Gypsy	979
+XDMR	Unknown	Unknown	903
+XDMR_DM	Unknown	Unknown	1587
+ZAM_I-int	LTR	Gypsy	2892
+ZAM_LTR	LTR	Gypsy	118