Mercurial > repos > artbio > repenrich2
diff test-data/edgeR_result_file.tab @ 0:4905a332a094 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit 73721d980c1f422dc880d80f61e44d270992e537
| author | artbio |
|---|---|
| date | Sat, 20 Apr 2024 11:56:53 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/edgeR_result_file.tab Sat Apr 20 11:56:53 2024 +0000 @@ -0,0 +1,211 @@ +TE_item log2FC FDR Class Type +DM297_I-int 2.6793027 2.6282e-21 LTR Gypsy +DM297_LTR 1.7384833 2.2491e-18 LTR Gypsy +NOF_FB -2.8084157 5.0238e-16 DNA MULE-NOF +Gypsy1-I_DM 2.3620314 7.4219e-16 LTR Gypsy +G7_DM 3.2474126 2.1955e-15 LINE Jockey +Gypsy_I-int 1.7353669 7.0009e-12 LTR Gypsy +LINEJ1_DM 1.9328922 7.3291e-12 LINE Jockey +GTWIN_LTR 1.8830928 1.4753e-11 LTR Gypsy +TOM_I-int 1.3279573 2.3370e-11 LTR Gypsy +Gypsy_LTR 1.5481327 5.6086e-11 LTR Gypsy +DM1731_I-int 1.5200776 8.8280e-10 LTR Copia +Gypsy6_LTR 1.5194208 7.9380e-07 LTR Gypsy +LOOPER1_DM -2.4819452 1.4638e-06 DNA PiggyBac +Gypsy12_I-int -1.1331776 1.8126e-06 LTR Gypsy +TIRANT_LTR 1.1107252 2.2447e-06 LTR Gypsy +R2_DM 1.6660608 3.5453e-06 LINE R2 +TRANSPAC_LTR 1.4826118 3.5453e-06 LTR Gypsy +Copia_LTR 1.6547494 1.4440e-05 LTR Copia +ACCORD_LTR 1.3604745 2.2709e-05 LTR Gypsy +TART_B1 -1.1585157 2.6066e-05 LINE Jockey +TIRANT_I-int 1.1654734 2.6066e-05 LTR Gypsy +TRANSIB1 -1.4012410 5.1066e-05 DNA CMC-Transib +MICROPIA_LTR -1.3064053 1.1081e-04 LTR Gypsy +G6_DM -1.0710126 1.1920e-04 LINE Jockey +NINJA_I-int -0.8858328 1.3196e-04 LTR Pao +DM412B_LTR 0.7918245 1.4375e-04 LTR Gypsy +Invader6_LTR -1.2000439 1.8588e-04 LTR Gypsy +R1_DM 0.9439141 2.4399e-04 LINE R1 +Copia_I-int 1.9219793 2.4701e-04 LTR Copia +BLASTOPIA_LTR 1.3373088 4.2419e-04 LTR Gypsy +G4_DM -0.7610153 7.7282e-04 LINE Jockey +LSU-rRNA_Hsa 2.5999764 8.4249e-04 rRNA rRNA +TRANSPAC_I-int 1.1513846 8.8969e-04 LTR Gypsy +SSU-rRNA_Hsa 1.1110223 1.3258e-03 rRNA rRNA +DOC5_DM -0.8219348 1.3864e-03 LINE Jockey +TRANSIB4 -1.0137218 1.8186e-03 DNA CMC-Transib +MICROPIA_I-int -0.7622253 2.4810e-03 LTR Gypsy +Invader1_I-int 0.7383903 2.6618e-03 LTR Gypsy +PLACW_DM 1.1515580 3.5147e-03 DNA P +TABOR_I-int 0.7258865 4.4550e-03 LTR Gypsy +I_DM 1.0299371 5.2437e-03 LINE I +DOC 0.9288090 6.2553e-03 LINE Jockey +Helitron1_DM -5.1088048 6.2553e-03 RC Helitron +Invader5_I-int -0.9851008 6.2553e-03 LTR Gypsy +Gypsy3_I-int 0.5748776 6.5147e-03 LTR Gypsy +ACCORD_I-int 0.5812882 9.2132e-03 LTR Gypsy +NINJA_LTR -0.9350682 1.0176e-02 LTR Pao +LSU-rRNA_Dme 0.8906030 1.1538e-02 rRNA rRNA +DM412 0.7648166 1.2284e-02 LTR Gypsy +BATUMI_I-int -0.5748157 1.2802e-02 LTR Pao +DMRT1C -0.6764081 1.5088e-02 LINE R1 +TAHRE -0.5210542 1.6700e-02 LINE Jockey +Gypsy8_I-int -0.5898598 2.1499e-02 LTR Gypsy +BLASTOPIA_I-int 0.7856665 3.3837e-02 LTR Gypsy +DMRT1A -0.5213895 3.8701e-02 LINE R1 +DM176_LTR -0.7025917 3.8852e-02 LTR Gypsy +Gypsy11_I-int -0.7462693 3.8865e-02 LTR Gypsy +FROGGER_I-int -0.6169088 5.0179e-02 LTR Copia +QUASIMODO2-I_DM 0.4583775 5.2952e-02 LTR Gypsy +MuDR-1_DEl 1.3442019 5.5313e-02 DNA MULE-NOF +MAX_I-int -0.5284242 5.7952e-02 LTR Pao +DM1731_LTR 0.7403381 5.9490e-02 LTR Copia +Chouto_I-int -0.5628833 7.5577e-02 LTR Gypsy +FROGGER_LTR 0.8776162 7.5577e-02 LTR Copia +BURDOCK_I-int 0.4073151 7.7504e-02 LTR Gypsy +DIVER_I-int 0.5684608 8.0203e-02 LTR Pao +G3_DM -0.6197649 9.6980e-02 LINE Jockey +BATUMI_LTR -0.6376005 1.0605e-01 LTR Pao +Invader4_I-int 0.5211667 1.0605e-01 LTR Gypsy +DM176_I-int 0.3751754 1.0654e-01 LTR Gypsy +Gypsy4_LTR 0.6647134 1.1503e-01 LTR Gypsy +Invader3_LTR -0.5650596 1.1948e-01 LTR Gypsy +G5A_DM -0.4798324 1.3264e-01 LINE Jockey +Gypsy2-I_DM 0.4072733 1.4293e-01 LTR Gypsy +MDG3_I-int 0.4058631 1.4437e-01 LTR Gypsy +S2_DM -0.5876596 1.4437e-01 DNA TcMar-Tc1 +Stalker2_I-int -0.4358543 1.4437e-01 LTR Gypsy +SSU-rRNA_Dme 0.4891677 1.4519e-01 rRNA rRNA +Transib5 -0.5280117 1.4640e-01 DNA CMC-Transib +R1-2_DM -0.6241502 1.5177e-01 LINE R1 +Invader5_LTR -0.6871659 1.5610e-01 LTR Gypsy +TLD2 -1.2630198 1.5610e-01 LTR Gypsy +BS2 -0.3428180 1.6714e-01 LINE Jockey +BLOOD_LTR 0.4838804 1.6752e-01 LTR Gypsy +ACCORD2_I-int -0.3621815 1.7241e-01 LTR Gypsy +Gypsy12A_LTR -0.3664626 1.7241e-01 LTR Gypsy +ROVER-LTR_DM -0.5416702 1.7241e-01 LTR Gypsy +TC1_DM 0.3896467 1.7742e-01 DNA TcMar-Tc1 +FW3_DM -0.4871951 1.9861e-01 LINE Jockey +HOBO -0.2947174 2.3711e-01 DNA hAT-hobo +ROO_LTR 0.3894728 2.6222e-01 LTR Pao +BS3_DM -0.4301565 2.6222e-01 LINE Jockey +Gypsy9_I-int -0.4486270 2.6339e-01 LTR Gypsy +POGON1 0.4719376 2.6339e-01 DNA TcMar-Pogo +STALKER4_LTR 0.3720558 2.6339e-01 LTR Gypsy +Bica_I-int -0.3750879 2.6551e-01 LTR Gypsy +P-1_DY 0.9572949 2.8825e-01 DNA P +DMCR1A -0.3535721 2.9480e-01 LINE CR1 +Mariner2_DM -0.4338895 2.9480e-01 DNA TcMar-Tc1 +Gypsy7_LTR -0.4967190 3.0684e-01 LTR Gypsy +TRANSIB3 0.3329977 3.4773e-01 DNA CMC-Transib +DIVER2_LTR -0.3936057 3.6246e-01 LTR Pao +DMRPR 0.4645608 3.8574e-01 Unknown Unknown +XDMR_DM -0.2665308 3.8574e-01 Unknown Unknown +5S_DM -0.3703237 3.9192e-01 RNA RNA +Chimpo_LTR -0.4710280 3.9192e-01 LTR Gypsy +CIRCE -0.2236670 3.9192e-01 LTR Gypsy +DOC2_DM -0.2302510 3.9192e-01 LINE Jockey +DOC4_DM 0.3510568 3.9192e-01 LINE Jockey +Gypsy1-LTR_DM 0.3296633 3.9192e-01 LTR Gypsy +HETA -0.3096118 3.9192e-01 LINE Jockey +Invader2_LTR -0.3606909 3.9192e-01 LTR Gypsy +PROTOP -0.2304102 3.9192e-01 DNA P +ACCORD2_LTR -0.3854371 3.9867e-01 LTR Gypsy +SSU-rRNA_Cel 0.2562670 4.0383e-01 rRNA rRNA +ZAM_I-int 0.2414354 4.0661e-01 LTR Gypsy +BARI1 -0.3735324 4.1382e-01 DNA TcMar-Tc1 +Copia2_I-int -0.2113231 4.1382e-01 LTR Copia +HELENA_RT 0.2954827 4.1382e-01 LINE Jockey +BLOOD_I-int 0.2893373 4.2455e-01 LTR Gypsy +Chouto_LTR -0.4338500 4.3619e-01 LTR Gypsy +Chimpo_I-int -0.3314691 4.5127e-01 LTR Gypsy +NOMAD_LTR -0.3209878 4.5127e-01 LTR Gypsy +DIVER2_I-int -0.2289981 4.5378e-01 LTR Pao +DOC3_DM -0.2381738 4.6852e-01 LINE Jockey +Gypsy2_LTR 0.3263404 4.9330e-01 LTR Gypsy +S_DM 0.1820634 4.9593e-01 DNA TcMar-Tc1 +Gypsy6_I-int 0.2334889 5.0030e-01 LTR Gypsy +Invader6_I-int -0.2164593 5.0656e-01 LTR Gypsy +ROOA_I-int -0.2055700 5.0656e-01 LTR Pao +BURDOCK_LTR 0.3163693 5.2334e-01 LTR Gypsy +MAX_LTR -0.2697259 5.2334e-01 LTR Pao +ROO_I-int 0.2651464 5.2334e-01 LTR Pao +XDMR 0.2389322 5.2334e-01 Unknown Unknown +BEL_I-int 0.2260271 5.4960e-01 LTR Pao +Gypsy10_I-int -0.2003926 5.4960e-01 LTR Gypsy +Gypsy11_LTR -0.3153869 5.4960e-01 LTR Gypsy +Gypsy8_LTR -0.2405647 5.4960e-01 LTR Gypsy +Transib-N1_DM -0.2959361 5.4960e-01 DNA CMC-Transib +DIVER_LTR 0.2596569 5.5142e-01 LTR Pao +DOC6_DM 0.2109295 5.5744e-01 LINE Jockey +GTWIN_I-int 0.1824941 5.5998e-01 LTR Gypsy +MDG1_LTR -0.2338760 5.6341e-01 LTR Gypsy +ARS406_DM -0.2643500 5.7901e-01 Unknown Unknown +Invader3_I-int -0.1497623 5.7901e-01 LTR Gypsy +TRANSIB2 -0.1574346 5.7901e-01 DNA CMC-Transib +Gypsy9_LTR -0.3531528 6.2010e-01 LTR Gypsy +Invader2_I-int -0.1629423 6.2495e-01 LTR Gypsy +Jockey2 -0.1743865 6.2495e-01 LINE Jockey +MDG3_LTR -0.2003640 6.2495e-01 LTR Gypsy +POGO -0.1617454 6.2495e-01 DNA TcMar-Pogo +FW2_DM 0.1701777 6.5086e-01 LINE Jockey +Baggins1 -0.1467398 6.5429e-01 LINE LOA +PROTOP_A 0.1182439 6.7517e-01 DNA P +TART-A 0.1256629 6.7517e-01 LINE Jockey +Stalker3_LTR -0.1859830 6.8046e-01 LTR Gypsy +Bica_LTR -0.2144653 6.8233e-01 LTR Gypsy +NTS_DM -0.1893877 6.8404e-01 Other Other +G5_DM -0.1234155 6.8736e-01 LINE Jockey +TABOR_LTR -0.2553509 6.8736e-01 LTR Gypsy +FB4_DM -0.1257960 7.3366e-01 DNA TcMar-Tc1 +HMSBEAGLE_I-int 0.1271561 7.3366e-01 LTR Gypsy +DMRT1B -0.1232374 7.3586e-01 LINE R1 +NOMAD_I-int -0.1496694 7.3586e-01 LTR Gypsy +ZAM_LTR 0.1743412 7.3586e-01 LTR Gypsy +Gypsy10_LTR -0.1653357 7.4754e-01 LTR Gypsy +LmeSINE1c -0.2373454 7.4754e-01 SINE tRNA-Deu-L2 +QUASIMODO2-LTR_DM -0.1678274 7.4754e-01 LTR Gypsy +BEL_LTR 0.1413744 7.6869e-01 LTR Pao +QUASIMODO_I-int 0.1147817 7.6929e-01 LTR Gypsy +Invader1_LTR 0.1285521 7.7711e-01 LTR Gypsy +IVK_DM -0.0922152 7.8193e-01 LINE I +BS4_DM -0.2651727 7.9393e-01 LINE Jockey +Copia2_LTR_DM 0.1351925 7.9393e-01 LTR Copia +Gypsy12_LTR -0.0944692 7.9977e-01 LTR Gypsy +Gypsy5_I-int -0.0889119 8.0188e-01 LTR Gypsy +Gypsy6A_LTR -0.1275535 8.1055e-01 LTR Gypsy +PROTOP_B -0.0857822 8.1067e-01 DNA P +Copia1-LTR_DM -0.1081470 8.2869e-01 LTR Copia +G_DM 0.0788783 8.3480e-01 LINE Jockey +LSU-rRNA_Cel -0.1045374 8.4508e-01 rRNA rRNA +IDEFIX_I-int 0.0667804 8.6328e-01 LTR Gypsy +DMRP1 0.0889793 8.7188e-01 Unknown Unknown +Gypsy4_I-int -0.0632668 8.8199e-01 LTR Gypsy +QUASIMODO_LTR -0.0758141 8.8199e-01 LTR Gypsy +Gypsy5_LTR -0.0832238 8.8416e-01 LTR Gypsy +Gypsy7_I-int 0.0709106 8.8416e-01 LTR Gypsy +TC1-2_DM 0.0485761 8.8416e-01 DNA TcMar-Tc1 +ROVER-I_DM -0.0523539 8.8501e-01 LTR Gypsy +Stalker2_LTR -0.0636566 8.8501e-01 LTR Gypsy +MDG1_I-int -0.0527394 9.0541e-01 LTR Gypsy +DMLTR5 0.0615033 9.2259e-01 LTR Gypsy +Gypsy2_I-int -0.0370213 9.2289e-01 LTR Gypsy +Gypsy2-LTR_DM 0.0531394 9.2289e-01 LTR Gypsy +ALA_DM -0.1255824 9.2725e-01 Unknown Unknown +Gypsy3_LTR -0.0416825 9.5360e-01 LTR Gypsy +M4DM -0.0286022 9.5845e-01 DNA CMC-Transib +DNAREP1_DM 0.0280918 9.6629e-01 RC Helitron +BARI_DM 0.0258962 9.7189e-01 DNA TcMar-Tc1 +DMTOM1_LTR 0.0238942 9.7754e-01 LTR Gypsy +MINOS 0.0226472 9.8823e-01 DNA TcMar-Tc1 +STALKER4_I-int 0.0128051 9.8873e-01 LTR Gypsy +G2_DM 0.0110450 9.9427e-01 LINE Jockey +IDEFIX_LTR 0.0103925 9.9427e-01 LTR Gypsy +ROOA_LTR -0.0111583 9.9548e-01 LTR Pao +BS -0.0065436 9.9758e-01 LINE Jockey +Invader4_LTR 0.0049712 9.9758e-01 LTR Gypsy +Copia1-I_DM 0.0012652 1.0000e+00 LTR Copia +FTZ_DM 0.0000000 1.0000e+00 Unknown Unknown +FUSHI_DM 0.0000000 1.0000e+00 Unknown Unknown