view test-data/chrY_single_fraction_counts.tab @ 2:cfb06f8e8f52 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit 4ac07201d6267f5efd5c2af20db7f53fce5af8af
author artbio
date Sat, 20 Apr 2024 15:17:04 +0000
parents 4905a332a094
children 388a47ca4199
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A-rich	Low_complexity	Low_complexity	0.0
ACCORD2_I-int	LTR	Gypsy	0.0
ACCORD2_LTR	LTR	Gypsy	0.0
ACCORD_I-int	LTR	Gypsy	0.0
BARI1	DNA	TcMar-Tc1	0.0
BATUMI_LTR	LTR	Pao	0.0
BS	LINE	Jockey	0.0
BS2	LINE	Jockey	29.0
BURDOCK_I-int	LTR	Gypsy	0.0
Baggins1	LINE	LOA	0.0
Bica_I-int	LTR	Gypsy	19.0
Bica_LTR	LTR	Gypsy	0.0
CIRCE	LTR	Gypsy	0.0
Chouto_I-int	LTR	Gypsy	0.0
Copia1-I_DM	LTR	Copia	0.0
Copia_I-int	LTR	Copia	12652.0
Copia_LTR	LTR	Copia	134.0
DIVER2_I-int	LTR	Pao	1.0
DIVER2_LTR	LTR	Pao	0.0
DM1731_I-int	LTR	Copia	3.0
DM1731_LTR	LTR	Copia	0.0
DM176_I-int	LTR	Gypsy	0.0
DM412	LTR	Gypsy	0.0
DM412B_LTR	LTR	Gypsy	0.0
DMCR1A	LINE	CR1	2.0
DMLTR5	LTR	Gypsy	0.0
DMRT1A	LINE	R1	0.0
DMRT1B	LINE	R1	35.0
DMRT1C	LINE	R1	0.0
DNAREP1_DM	RC	Helitron	0.0
DOC2_DM	LINE	Jockey	0.0
DOC3_DM	LINE	Jockey	0.0
FB4_DM	DNA	TcMar-Tc1	15.0
FROGGER_I-int	LTR	Copia	0.0
FW2_DM	LINE	Jockey	0.0
G3_DM	LINE	Jockey	0.0
G5A_DM	LINE	Jockey	0.0
G5_DM	LINE	Jockey	0.0
G6_DM	LINE	Jockey	0.0
GA-rich	Low_complexity	Low_complexity	0.0
GTWIN_I-int	LTR	Gypsy	0.0
G_DM	LINE	Jockey	0.0
Gypsy11_I-int	LTR	Gypsy	0.0
Gypsy11_LTR	LTR	Gypsy	0.0
Gypsy12_LTR	LTR	Gypsy	0.0
Gypsy2-I_DM	LTR	Gypsy	1.0
Gypsy2-LTR_DM	LTR	Gypsy	0.0
Gypsy3_LTR	LTR	Gypsy	0.0
Gypsy4_I-int	LTR	Gypsy	0.0
Gypsy5_I-int	LTR	Gypsy	0.0
Gypsy6A_LTR	LTR	Gypsy	0.0
Gypsy6_I-int	LTR	Gypsy	12.0
Gypsy8_I-int	LTR	Gypsy	0.0
Gypsy8_LTR	LTR	Gypsy	0.0
Gypsy9_I-int	LTR	Gypsy	0.0
Gypsy_I-int	LTR	Gypsy	15.0
Gypsy_LTR	LTR	Gypsy	0.0
HELENA_RT	LINE	Jockey	0.0
HETA	LINE	Jockey	12.0
HMSBEAGLE_I-int	LTR	Gypsy	1.0
IDEFIX_I-int	LTR	Gypsy	0.0
IDEFIX_LTR	LTR	Gypsy	0.0
Invader1_I-int	LTR	Gypsy	0.0
Invader1_LTR	LTR	Gypsy	0.0
Invader2_I-int	LTR	Gypsy	0.0
Invader4_I-int	LTR	Gypsy	0.0
Invader4_LTR	LTR	Gypsy	0.0
Invader5_I-int	LTR	Gypsy	0.0
Invader5_LTR	LTR	Gypsy	0.0
Invader6_I-int	LTR	Gypsy	0.0
Invader6_LTR	LTR	Gypsy	0.0
MAX_I-int	LTR	Pao	27.0
MAX_LTR	LTR	Pao	1.0
MDG1_I-int	LTR	Gypsy	0.0
MDG1_LTR	LTR	Gypsy	0.0
MDG3_I-int	LTR	Gypsy	70.0
MDG3_LTR	LTR	Gypsy	0.0
MICROPIA_I-int	LTR	Gypsy	0.0
MICROPIA_LTR	LTR	Gypsy	0.0
Mariner2_DM	DNA	TcMar-Tc1	0.0
NINJA_I-int	LTR	Pao	0.0
NOMAD_I-int	LTR	Gypsy	0.0
PROTOP_A	DNA	P	18.0
PROTOP_B	DNA	P	0.0
QUASIMODO2-I_DM	LTR	Gypsy	19.0
QUASIMODO2-LTR_DM	LTR	Gypsy	0.0
QUASIMODO_I-int	LTR	Gypsy	3.0
QUASIMODO_LTR	LTR	Gypsy	1.0
R1_DM	LINE	R1	0.0
ROOA_I-int	LTR	Pao	0.0
ROOA_LTR	LTR	Pao	0.0
ROVER-I_DM	LTR	Gypsy	188.0
ROVER-LTR_DM	LTR	Gypsy	1.0
S2_DM	DNA	TcMar-Tc1	0.0
STALKER4_I-int	LTR	Gypsy	28.0
STALKER4_LTR	LTR	Gypsy	0.0
S_DM	DNA	TcMar-Tc1	25.0
Stalker2_I-int	LTR	Gypsy	32.0
Stalker2_LTR	LTR	Gypsy	2.0
TART-A	LINE	Jockey	2.0
TART_B1	LINE	Jockey	10.0
TC1-2_DM	DNA	TcMar-Tc1	0.0
TC1_DM	DNA	TcMar-Tc1	0.0
TLD2	LTR	Gypsy	0.0
TRANSIB1	DNA	CMC-Transib	0.0
TRANSIB2	DNA	CMC-Transib	12.0
ZAM_I-int	LTR	Gypsy	0.0
_AACACA_n	Simple_repeat	Simple_repeat	0.0
_AAT_n	Simple_repeat	Simple_repeat	0.0
_ACAATAG_n	Simple_repeat	Simple_repeat	0.0
_ACC_n	Simple_repeat	Simple_repeat	0.0
_AGAGAAG_n	Simple_repeat	Simple_repeat	0.0
_AGAGA_n	Simple_repeat	Simple_repeat	0.0
_ATAAT_n	Simple_repeat	Simple_repeat	0.0
_ATATATT_n	Simple_repeat	Simple_repeat	0.0
_ATATTAT_n	Simple_repeat	Simple_repeat	0.0
_ATTTTT_n	Simple_repeat	Simple_repeat	0.0
_ATT_n	Simple_repeat	Simple_repeat	0.0
_AT_n	Simple_repeat	Simple_repeat	0.0
_A_n	Simple_repeat	Simple_repeat	0.0
_CATA_n	Simple_repeat	Simple_repeat	0.0
_CTTTT_n	Simple_repeat	Simple_repeat	0.0
_GAGAA_n	Simple_repeat	Simple_repeat	0.0
_GCCTTT_n	Simple_repeat	Simple_repeat	0.0
_TAATAT_n	Simple_repeat	Simple_repeat	0.0
_TAATA_n	Simple_repeat	Simple_repeat	0.0
_TATAAAA_n	Simple_repeat	Simple_repeat	0.0
_TATAA_n	Simple_repeat	Simple_repeat	0.0
_TATCATG_n	Simple_repeat	Simple_repeat	0.0
_TA_n	Simple_repeat	Simple_repeat	0.0
_TGTTG_n	Simple_repeat	Simple_repeat	0.0
_TTATATA_n	Simple_repeat	Simple_repeat	0.0
_TTATAT_n	Simple_repeat	Simple_repeat	0.0
_TTATA_n	Simple_repeat	Simple_repeat	0.0
_TTA_n	Simple_repeat	Simple_repeat	0.0
_TTCTT_n	Simple_repeat	Simple_repeat	0.0
_TTC_n	Simple_repeat	Simple_repeat	0.0
_TTTAT_n	Simple_repeat	Simple_repeat	0.0
_TTTA_n	Simple_repeat	Simple_repeat	0.0
_TTTC_n	Simple_repeat	Simple_repeat	0.0
_TTTGA_n	Simple_repeat	Simple_repeat	0.0
_TTTTAG_n	Simple_repeat	Simple_repeat	0.0
_TTTTCTT_n	Simple_repeat	Simple_repeat	0.0
_TTTTC_n	Simple_repeat	Simple_repeat	0.0
_T_n	Simple_repeat	Simple_repeat	0.0