Mercurial > repos > artbio > rsem

diff test-data/isoform_abundances.tab @ 0:e5e836936d60 draft

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planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/rsem commit d84a0359354698a4b29df12ab581c2618bffcf80
author artbio
date Sat, 31 Mar 2018 21:30:07 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/isoform_abundances.tab	Sat Mar 31 21:30:07 2018 -0400
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+transcript_id	gene_id	length	effective_length	expected_count	TPM	FPKM	IsoPct
+ENST00000332831	ENSG00000185097	995	895.00	0.00	0.00	0.00	0.00
+ENST00000335137	ENSG00000186092	918	818.00	0.00	0.00	0.00	0.00
+ENST00000416718	ENSG00000198744	547	447.00	141.00	97872.44	142409.58	100.00
+ENST00000410691	ENSG00000222623	104	4.00	0.00	0.00	0.00	0.00
+ENST00000411249	ENSG00000223181	104	4.00	0.00	0.00	0.00	0.00
+ENST00000452176	ENSG00000223659	802	702.00	0.00	0.00	0.00	0.00
+ENST00000450305	ENSG00000223972	632	532.00	0.00	0.00	0.00	0.00
+ENST00000456328	ENSG00000223972	1657	1557.00	0.00	0.00	0.00	0.00
+ENST00000515242	ENSG00000223972	1653	1553.00	0.00	0.00	0.00	0.00
+ENST00000518655	ENSG00000223972	1483	1383.00	0.00	0.00	0.00	0.00
+ENST00000445840	ENSG00000224813	180	80.00	0.00	0.00	0.00	0.00
+ENST00000506640	ENSG00000224956	1236	1136.00	3.89	1062.90	1546.57	100.00
+ENST00000457540	ENSG00000225630	1044	944.00	176.00	57848.16	84172.12	100.00
+ENST00000416931	ENSG00000225972	372	272.00	31.00	35362.39	51454.15	100.00
+ENST00000423562	ENSG00000227232	1669	1569.00	0.00	0.00	0.00	0.00
+ENST00000438504	ENSG00000227232	1783	1683.00	9.00	1659.23	2414.27	100.00
+ENST00000488147	ENSG00000227232	1351	1251.00	0.00	0.00	0.00	0.00
+ENST00000538476	ENSG00000227232	1583	1483.00	0.00	0.00	0.00	0.00
+ENST00000541675	ENSG00000227232	1416	1316.00	0.00	0.00	0.00	0.00
+ENST00000428504	ENSG00000228327	1317	1217.00	12.67	3231.25	4701.63	100.00
+ENST00000335577	ENSG00000228463	510	410.00	18.90	14302.58	20811.01	46.13
+ENST00000424587	ENSG00000228463	2257	2157.00	0.00	0.00	0.00	0.00
+ENST00000442116	ENSG00000228463	1292	1192.00	0.00	0.00	0.00	0.00
+ENST00000448958	ENSG00000228463	1925	1825.00	98.23	16699.78	24299.07	53.87
+ENST00000427426	ENSG00000229344	682	582.00	232.00	123684.09	179966.89	100.00
+ENST00000440782	ENSG00000229376	2455	2355.00	0.00	0.00	0.00	0.00
+ENST00000422528	ENSG00000229905	456	356.00	0.00	0.00	0.00	0.00
+ENST00000414688	ENSG00000230021	750	650.00	0.00	0.00	0.00	0.00
+ENST00000419394	ENSG00000230021	480	380.00	0.00	0.00	0.00	0.00
+ENST00000440200	ENSG00000230021	413	313.00	0.00	0.00	0.00	0.00
+ENST00000441245	ENSG00000230021	629	529.00	52.90	31029.35	45149.35	96.43
+ENST00000447954	ENSG00000230021	336	236.00	0.00	0.00	0.00	0.00
+ENST00000448605	ENSG00000230021	370	270.00	1.00	1149.17	1672.11	3.57
+ENST00000447500	ENSG00000230092	523	423.00	0.00	0.00	0.00	0.00
+ENST00000590817	ENSG00000230092	523	423.00	0.00	0.00	0.00	0.00
+ENST00000417636	ENSG00000231709	842	742.00	0.00	0.00	0.00	0.00
+ENST00000432723	ENSG00000233653	2477	2377.00	1.79	233.34	339.53	100.00
+ENST00000442987	ENSG00000233750	3812	3712.00	25.68	2146.64	3123.48	100.00
+ENST00000423796	ENSG00000235146	607	507.00	0.00	0.00	0.00	0.00
+ENST00000450696	ENSG00000235146	402	302.00	0.00	0.00	0.00	0.00
+ENST00000426406	ENSG00000235249	995	895.00	0.00	0.00	0.00	0.00
+ENST00000416385	ENSG00000235373	4860	4760.00	151.37	9867.04	14357.06	100.00
+ENST00000412666	ENSG00000236601	426	326.00	0.00	0.00	0.00	0.00
+ENST00000450983	ENSG00000236601	607	507.00	0.00	0.00	0.00	0.00
+ENST00000458203	ENSG00000236679	385	285.00	18.53	20178.14	29360.26	100.00
+ENST00000441866	ENSG00000236743	676	576.00	0.00	0.00	0.00	0.00
+ENST00000419160	ENSG00000237094	607	507.00	0.00	0.00	0.00	0.00
+ENST00000423728	ENSG00000237094	573	473.00	2.00	1311.80	1908.74	3.24
+ENST00000425496	ENSG00000237094	2661	2561.00	18.46	2236.61	3254.38	5.53
+ENST00000431321	ENSG00000237094	406	306.00	0.00	0.00	0.00	0.00
+ENST00000431812	ENSG00000237094	336	236.00	0.00	0.00	0.00	0.00
+ENST00000432964	ENSG00000237094	575	475.00	0.00	0.15	0.21	0.00
+ENST00000440038	ENSG00000237094	746	646.00	3.08	1480.29	2153.90	3.66
+ENST00000440163	ENSG00000237094	462	362.00	0.00	0.00	0.00	0.00
+ENST00000453935	ENSG00000237094	498	398.00	44.40	34610.15	50359.60	85.59
+ENST00000455207	ENSG00000237094	413	313.00	0.00	0.00	0.00	0.00
+ENST00000455464	ENSG00000237094	735	635.00	0.00	0.00	0.00	0.00
+ENST00000599771	ENSG00000237094	457	357.00	0.92	797.86	1160.93	1.97
+ENST00000601486	ENSG00000237094	696	596.00	0.00	0.00	0.01	0.00
+ENST00000601814	ENSG00000237094	635	535.00	0.00	0.00	0.00	0.00
+ENST00000358533	ENSG00000237491	1194	1094.00	0.00	0.00	0.00	0.00
+ENST00000412115	ENSG00000237491	581	481.00	0.00	0.00	0.00	0.00
+ENST00000429505	ENSG00000237491	441	341.00	0.00	0.00	0.00	0.00
+ENST00000434264	ENSG00000237491	513	413.00	0.00	0.00	0.00	0.00
+ENST00000443772	ENSG00000237491	417	317.00	0.00	0.00	0.00	0.00
+ENST00000457084	ENSG00000237491	566	466.00	0.00	0.00	0.00	0.00
+ENST00000585745	ENSG00000237491	168	68.00	0.00	0.00	0.00	0.00
+ENST00000585768	ENSG00000237491	394	294.00	3.00	3167.34	4608.65	100.00
+ENST00000585826	ENSG00000237491	390	290.00	0.00	0.00	0.00	0.00
+ENST00000586288	ENSG00000237491	1040	940.00	0.00	0.00	0.00	0.00
+ENST00000586928	ENSG00000237491	598	498.00	0.00	0.00	0.00	0.00
+ENST00000587126	ENSG00000237491	495	395.00	0.00	0.00	0.00	0.00
+ENST00000587530	ENSG00000237491	881	781.00	0.00	0.00	0.00	0.00
+ENST00000588951	ENSG00000237491	607	507.00	0.00	0.00	0.00	0.00
+ENST00000589531	ENSG00000237491	714	614.00	0.00	0.00	0.00	0.00
+ENST00000589899	ENSG00000237491	809	709.00	0.00	0.00	0.00	0.00
+ENST00000590848	ENSG00000237491	726	626.00	0.00	0.00	0.00	0.00
+ENST00000591440	ENSG00000237491	780	680.00	0.00	0.00	0.00	0.00
+ENST00000591702	ENSG00000237491	1873	1773.00	0.00	0.00	0.00	0.00
+ENST00000592547	ENSG00000237491	608	508.00	0.00	0.00	0.00	0.00
+ENST00000593022	ENSG00000237491	693	593.00	0.00	0.00	0.00	0.00
+ENST00000417324	ENSG00000237613	1187	1087.00	0.00	0.00	0.00	0.00
+ENST00000461467	ENSG00000237613	590	490.00	10.00	6332.06	9213.49	100.00
+ENST00000423372	ENSG00000237683	2661	2561.00	1.65	199.62	290.46	100.00
+ENST00000414273	ENSG00000237973	1543	1443.00	483.00	103855.53	151115.29	100.00
+ENST00000453576	ENSG00000238009	336	236.00	0.00	0.00	0.00	0.00
+ENST00000466430	ENSG00000238009	2748	2648.00	9.16	1073.35	1561.79	2.08
+ENST00000471248	ENSG00000238009	629	529.00	86.07	50485.05	73458.42	97.92
+ENST00000477740	ENSG00000238009	491	391.00	0.00	0.00	0.00	0.00
+ENST00000357876	ENSG00000239664	498	398.00	44.40	34610.15	50359.60	100.00
+ENST00000440196	ENSG00000239664	439	339.00	0.00	0.00	0.00	0.00
+ENST00000493797	ENSG00000239906	323	223.00	0.00	0.00	0.00	0.00
+ENST00000495576	ENSG00000239945	1319	1219.00	6.35	1615.74	2350.99	100.00
+ENST00000492842	ENSG00000240361	940	840.00	0.00	0.00	0.00	0.00
+ENST00000467115	ENSG00000240409	207	107.00	44.00	127590.33	185650.66	100.00
+ENST00000435300	ENSG00000240453	402	302.00	0.00	0.00	0.00	0.00
+ENST00000417659	ENSG00000240618	295	195.00	0.00	0.00	0.00	0.00
+ENST00000496488	ENSG00000241599	457	357.00	0.00	0.00	0.00	0.00
+ENST00000424429	ENSG00000241670	363	263.00	1.65	1943.07	2827.26	100.00
+ENST00000450734	ENSG00000241670	457	357.00	0.00	0.00	0.00	0.00
+ENST00000466557	ENSG00000241860	1301	1201.00	9.11	2354.13	3425.38	8.23
+ENST00000484859	ENSG00000241860	4860	4760.00	158.65	10341.48	15047.41	36.14
+ENST00000490997	ENSG00000241860	518	418.00	0.00	0.00	0.00	0.00
+ENST00000491962	ENSG00000241860	278	178.00	9.13	15919.40	23163.57	55.63
+ENST00000469289	ENSG00000243485	535	435.00	0.00	0.00	0.00	0.00
+ENST00000473358	ENSG00000243485	712	612.00	0.00	0.00	0.00	0.00
+ENST00000607096	ENSG00000243485	138	38.00	0.00	0.00	0.00	0.00
+ENST00000514057	ENSG00000248527	681	581.00	304.00	162347.76	236224.57	100.00
+ENST00000514436	ENSG00000250575	1239	1139.00	0.00	0.00	0.00	0.00
+ENST00000540477	ENSG00000256186	90	0.00	0.00	0.00	0.00	0.00
+ENST00000594647	ENSG00000268020	126	26.00	0.00	0.00	0.00	0.00
+ENST00000606857	ENSG00000268020	840	740.00	0.00	0.00	0.00	0.00
+ENST00000438434	ENSG00000268663	424	324.00	0.00	0.00	0.00	0.00
+ENST00000494149	ENSG00000268903	755	655.00	0.00	0.00	0.00	0.00
+ENST00000437905	ENSG00000269732	363	263.00	0.00	0.00	0.00	0.00
+ENST00000599533	ENSG00000269831	129	29.00	2.00	21401.59	31140.45	100.00
+ENST00000595919	ENSG00000269981	284	184.00	0.00	0.00	0.00	0.00