Mercurial > repos > artbio > rsem

changeset 7:585c6120dca0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/rsem commit 8e5c580d93b413f4a0b2ef41218a38f4d27f1e42
author artbio
date Thu, 30 Aug 2018 12:34:13 -0400
parents 45a30e216fec
children f6fc9b92d629
files macros.xml rsem-bwt2.xml rsem.xml
diffstat 3 files changed, 1 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Sun Jun 03 19:50:57 2018 -0400
+++ b/macros.xml	Thu Aug 30 12:34:13 2018 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
   <macros>
-    <token name="@WRAPPER_VERSION@">0.8.0</token>
+    <token name="@WRAPPER_VERSION@">0.9.0</token>
     <xml name="rsem_options">
         <param name="seedlength" type="integer" value="25" optional="true" label="Seed length used by the read aligner" help="Providing the correct value for this parameter is important for RSEM's accuracy if the data are single-end reads. RSEM uses this value for Bowtie's seed length parameter. The minimum value is 25. (Default:25)">
         </param>
--- a/rsem-bwt2.xml	Sun Jun 03 19:50:57 2018 -0400
+++ b/rsem-bwt2.xml	Thu Aug 30 12:34:13 2018 -0400
@@ -24,8 +24,6 @@
         #if $job.polya.polya_length:
           --polyA-length $job.polya.polya_length
         #end if
-      #elif $job.polya.polya_use == 'none':
-        --no-polyA
       #end if
       $job.ntog
       #if $job.transcript_to_gene_map:
--- a/rsem.xml	Sun Jun 03 19:50:57 2018 -0400
+++ b/rsem.xml	Thu Aug 30 12:34:13 2018 -0400
@@ -24,8 +24,6 @@
         #if $job.polya.polya_length:
           --polyA-length $job.polya.polya_length
         #end if
-      #elif $job.polya.polya_use == 'none':
-        --no-polyA
       #end if
       $job.ntog
       #if $job.transcript_to_gene_map: