Mercurial > repos > artbio > rsem

changeset 8:f6fc9b92d629 draft

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"planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/rsem commit edd1ee51a72f1701ba2a89fc9821ec1ec2b3973c"
author artbio
date Sun, 05 Jan 2020 16:40:13 -0500
parents 585c6120dca0
children e00a79cf5f8c
files extract_transcript_to_gene_map_from_trinity.xml macros.xml rsem-bwt2.xml rsem.xml
diffstat 4 files changed, 11 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/extract_transcript_to_gene_map_from_trinity.xml	Thu Aug 30 12:34:13 2018 -0400
+++ b/extract_transcript_to_gene_map_from_trinity.xml	Sun Jan 05 16:40:13 2020 -0500
@@ -3,9 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-  <requirements>
-    <requirement type="package" version="1.3.0">rsem</requirement>
-  </requirements>
+    <expand macro="requirements" />
   <stdio>
     <exit_code range="1:"  level="fatal" description="Error Running RSEM" />
   </stdio>
--- a/macros.xml	Thu Aug 30 12:34:13 2018 -0400
+++ b/macros.xml	Sun Jan 05 16:40:13 2020 -0500
@@ -1,6 +1,13 @@
 <?xml version="1.0"?>
   <macros>
-    <token name="@WRAPPER_VERSION@">0.9.0</token>
+    <token name="@WRAPPER_VERSION@">1.0.0</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="1.3.0=pl526r341h4f16992_4">rsem</requirement>
+            <requirement type="package" version="1.2.3=py37hc9558a2_0">bowtie</requirement>
+            <requirement type="package" version="2.3.5=py37he860b03_0">bowtie2</requirement>
+        </requirements>
+    </xml>
     <xml name="rsem_options">
         <param name="seedlength" type="integer" value="25" optional="true" label="Seed length used by the read aligner" help="Providing the correct value for this parameter is important for RSEM's accuracy if the data are single-end reads. RSEM uses this value for Bowtie's seed length parameter. The minimum value is 25. (Default:25)">
         </param>
--- a/rsem-bwt2.xml	Thu Aug 30 12:34:13 2018 -0400
+++ b/rsem-bwt2.xml	Sun Jan 05 16:40:13 2020 -0500
@@ -3,10 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-  <requirements>
-    <requirement type="package" version="1.3.0">rsem</requirement>
-    <requirement type="package" version="2.3.4">bowtie2</requirement>
-  </requirements>
+    <expand macro="requirements" />
     <stdio>
         <exit_code range="1:" level="warning" description="Tool exception" />
     </stdio>
--- a/rsem.xml	Thu Aug 30 12:34:13 2018 -0400
+++ b/rsem.xml	Sun Jan 05 16:40:13 2020 -0500
@@ -3,10 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-  <requirements>
-    <requirement type="package" version="1.3.0">rsem</requirement>
-    <requirement type="package" version="1.2.2=py27pl5.22.0_0">bowtie</requirement>
-  </requirements>
+    <expand macro="requirements" />
     <stdio>
         <exit_code range="1:" level="warning" description="Tool exception" />
     </stdio>