Mercurial > repos > artbio > rsem
changeset 8:f6fc9b92d629 draft
"planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/rsem commit edd1ee51a72f1701ba2a89fc9821ec1ec2b3973c"
author | artbio |
---|---|
date | Sun, 05 Jan 2020 16:40:13 -0500 (2020-01-05) |
parents | 585c6120dca0 |
children | e00a79cf5f8c |
files | extract_transcript_to_gene_map_from_trinity.xml macros.xml rsem-bwt2.xml rsem.xml |
diffstat | 4 files changed, 11 insertions(+), 12 deletions(-) [+] |
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--- a/extract_transcript_to_gene_map_from_trinity.xml Thu Aug 30 12:34:13 2018 -0400 +++ b/extract_transcript_to_gene_map_from_trinity.xml Sun Jan 05 16:40:13 2020 -0500 @@ -3,9 +3,7 @@ <macros> <import>macros.xml</import> </macros> - <requirements> - <requirement type="package" version="1.3.0">rsem</requirement> - </requirements> + <expand macro="requirements" /> <stdio> <exit_code range="1:" level="fatal" description="Error Running RSEM" /> </stdio>
--- a/macros.xml Thu Aug 30 12:34:13 2018 -0400 +++ b/macros.xml Sun Jan 05 16:40:13 2020 -0500 @@ -1,6 +1,13 @@ <?xml version="1.0"?> <macros> - <token name="@WRAPPER_VERSION@">0.9.0</token> + <token name="@WRAPPER_VERSION@">1.0.0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="1.3.0=pl526r341h4f16992_4">rsem</requirement> + <requirement type="package" version="1.2.3=py37hc9558a2_0">bowtie</requirement> + <requirement type="package" version="2.3.5=py37he860b03_0">bowtie2</requirement> + </requirements> + </xml> <xml name="rsem_options"> <param name="seedlength" type="integer" value="25" optional="true" label="Seed length used by the read aligner" help="Providing the correct value for this parameter is important for RSEM's accuracy if the data are single-end reads. RSEM uses this value for Bowtie's seed length parameter. The minimum value is 25. (Default:25)"> </param>
--- a/rsem-bwt2.xml Thu Aug 30 12:34:13 2018 -0400 +++ b/rsem-bwt2.xml Sun Jan 05 16:40:13 2020 -0500 @@ -3,10 +3,7 @@ <macros> <import>macros.xml</import> </macros> - <requirements> - <requirement type="package" version="1.3.0">rsem</requirement> - <requirement type="package" version="2.3.4">bowtie2</requirement> - </requirements> + <expand macro="requirements" /> <stdio> <exit_code range="1:" level="warning" description="Tool exception" /> </stdio>
--- a/rsem.xml Thu Aug 30 12:34:13 2018 -0400 +++ b/rsem.xml Sun Jan 05 16:40:13 2020 -0500 @@ -3,10 +3,7 @@ <macros> <import>macros.xml</import> </macros> - <requirements> - <requirement type="package" version="1.3.0">rsem</requirement> - <requirement type="package" version="1.2.2=py27pl5.22.0_0">bowtie</requirement> - </requirements> + <expand macro="requirements" /> <stdio> <exit_code range="1:" level="warning" description="Tool exception" /> </stdio>