Mercurial > repos > artbio > sambamba
diff test-data/c1215_fixmate_filtered.sam @ 2:7ad3484aa5db draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sambamba commit ea1ce99d707fcf2d64f6f2cd96fdd1754f344df1"
| author | artbio |
|---|---|
| date | Thu, 30 Dec 2021 02:06:08 +0000 |
| parents | e3cbb848d8f7 |
| children |
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--- a/test-data/c1215_fixmate_filtered.sam Mon May 25 17:10:17 2020 -0400 +++ b/test-data/c1215_fixmate_filtered.sam Thu Dec 30 02:06:08 2021 +0000 @@ -1,5 +1,5 @@ @HD VN:1.3 SO:coordinate -@PG ID:sambamba CL:view -h -t 1 --filter=[MD] =~ /^\d+T\d+A\d+/ and first_of_pair -f sam -o /tmp/tmpzrv_byjx/files/a/d/c/dataset_adced56a-6b20-49ec-ae55-b745ffd1b703.dat input.bam AL096846:1000-5000 VN:1.0 +@PG ID:sambamba CL:view -h -t 1 --filter=[MD] =~ /^\d+T\d+A\d+/ and first_of_pair -f sam -o /tmp/tmp1mtgiw55/files/f/d/4/dataset_fd46ac7b-c6fd-430d-b562-c610caa9f3ac.dat input.bam AL096846:1000-5000 VN:1.0 AL096846_1043_1176_1df2 83 AL096846 1142 60 35M = 1043 -134 AAGGCACCTACTTTGACATTCGCGTCTCTCTTAGC <2<<).<<4<5<<<<;<<<<<<77<;<<<<<<<<< XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4T8A21 AL096846_1080_1249_1915 83 AL096846 1215 60 35M = 1080 -170 CTGACTTGTCGACGGATTTGACTAAGAAAATTTTA <<<:5:;77;<<&&<<<<<<<<<<<<<<<<<<<<< XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2T9A22 AL096846_1123_1300_24a3 83 AL096846 1268 37 2S33M = 1123 -178 TGCCGTTATCGCTTAGCAGATTCTAGTCAATTGCC :<:5<:;&..<7;<<<<<<<<<<<;<<<<<<<<<< XT:A:M NM:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:5T8A18