Mercurial > repos > artbio > sashimi_plot
comparison sashimi_plot.xml @ 2:964b974a5348 draft default tip
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sashimi_plot commit c9cdba24b5e5f47d61814834ea5e376467fede5c"
| author | artbio |
|---|---|
| date | Tue, 07 Jan 2020 06:30:31 -0500 |
| parents | 64aa67b5099f |
| children |
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| 1:64aa67b5099f | 2:964b974a5348 |
|---|---|
| 1 <tool id="sashimi_plot" name="Sashimi plot" version="0.1.0"> | 1 <tool id="sashimi_plot" name="Sashimi plot" version="0.1.1"> |
| 2 <description>: visualization of splicing events across multiple samples</description> | 2 <description>: visualization of splicing events across multiple samples</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3">python</requirement> | 4 <requirement type="package" version="3">python</requirement> |
| 5 <requirement type="package" version="1.3">samtools</requirement> | 5 <requirement type="package" version="1.3">samtools</requirement> |
| 6 <requirement type="package" version="2.2.1=r3.4.1_0">r-ggplot2</requirement> | 6 <requirement type="package" version="2.2.1=r3.4.1_0">r-ggplot2</requirement> |
| 77 </when> | 77 </when> |
| 78 <when value="1"/> | 78 <when value="1"/> |
| 79 </conditional> | 79 </conditional> |
| 80 <param name="alpha" label="Transparency level for density histogram" type="float" value="0.5" help="default=0.5"/> | 80 <param name="alpha" label="Transparency level for density histogram" type="float" value="0.5" help="default=0.5"/> |
| 81 <param name="base_size" label="Base font size" type="float" value="14" help="Base font size of the plot in pch [default=14]"/> | 81 <param name="base_size" label="Base font size" type="float" value="14" help="Base font size of the plot in pch [default=14]"/> |
| 82 <param name="ann_height" label="Height of annotation" type="float" value="1.5" help="Height of annotation plot (transcripts visualisation) in inches [default=1.5]"/> | 82 <param name="ann_height" label="Height of annotation" type="float" value="1.5" help="Height of annotation plot (transcript visualisation) in inches [default=1.5]"/> |
| 83 <param name="height" label="Height of sashimi plot" type="float" value="2" help="Height of the individual signal plot (sashimi vizualisation) in inches [default=2]"/> | 83 <param name="height" label="Height of sashimi plot" type="float" value="2" help="Height of the individual signal plot (sashimi vizualisation) in inches [default=2]"/> |
| 84 <param name="width" label="Width" type="float" value="10" help="Width of the plot in inches [default=10]"/> | 84 <param name="width" label="Width" type="float" value="10" help="Width of the plot in inches [default=10]"/> |
| 85 </when> | 85 </when> |
| 86 </conditional> | 86 </conditional> |
| 87 <param name="region" type="text" help="Must be the following format : chromosome:start-end"/> | 87 <param name="region" type="text" help="Must be the following format : chromosome:start-end"/> |